TBLASTN 2.2.17 [Aug-26-2007]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= gi|8923460|ref|NP_060316.1| tRNA selenocysteine associated
protein 1 [Homo sapiens]
(287 letters)
Database: genome.fa
35 sequences; 31,379,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|154345382|ref|NC_009326.1| Leishmania braziliensis MHOM/BR/75... 77 1e-14
gi|154339085|ref|NC_009317.1| Leishmania braziliensis MHOM/BR/75... 55 4e-08
gi|154335720|ref|NC_009310.1| Leishmania braziliensis MHOM/BR/75... 40 0.002
gi|154342106|ref|NC_009322.1| Leishmania braziliensis MHOM/BR/75... 39 0.005
gi|154341365|ref|NC_009321.1| Leishmania braziliensis MHOM/BR/75... 35 0.052
gi|154335056|ref|NC_009308.1| Leishmania braziliensis MHOM/BR/75... 33 0.18
gi|154343652|ref|NC_009324.1| Leishmania braziliensis MHOM/BR/75... 31 1.1
gi|154333023|ref|NC_009301.1| Leishmania braziliensis MHOM/BR/75... 31 1.2
gi|154333356|ref|NC_009302.1| Leishmania braziliensis MHOM/BR/75... 28 5.4
>gi|154345382|ref|NC_009326.1| Leishmania braziliensis MHOM/BR/75/M2904
chromosome 34
Length = 2012684
Score = 77.0 bits (188), Expect = 1e-14, Method: Composition-based stats.
Identities = 54/168 (32%), Positives = 91/168 (54%), Gaps = 4/168 (2%)
Frame = +2
Query: 3 ASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCL 62
AS+++GDL+ ++E + F G T+++V++ R+ +T GY +V F + +AE+ +
Sbjct: 1868852 ASIYVGDLDAAINEPQLVELFKPFG-TILNVRVCRDIITQRSLGYGYVNFDNHHSAERAI 1869028
Query: 63 HKINGKPLPGATPAKRFKLNYATYGKQPDNSPEYS----LFVGDLTPDVDDGMLYEFFVK 118
+N + + K +L + +Q D S YS +FV +L DVD L++ F K
Sbjct: 1869029 ESMNFRRVGD----KCVRLMW----QQRDPSLRYSGNGNVFVKNLEKDVDSKSLHDIFTK 1869184
Query: 119 VYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSK 166
+ S KV+ D+ G S+GYGFV F DE+ K A+ + GA S+
Sbjct: 1869185 -FGSILSCKVMEDEEGKSRGYGFVHFKDEISAKDAIVKMNGAADHASE 1869325
Score = 50.1 bits (118), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/80 (35%), Positives = 45/80 (56%)
Frame = +2
Query: 92 NSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQK 151
+ P S++VG L PD+ + LY++FV++ P V T S GYG+V F D + +
Sbjct: 1561388 SGPNPSIWVGGLDPDLQEQRLYDYFVRIGPVTSVRVCVDSATQKSLGYGYVNFQDPADAE 1561567
Query: 152 RALTECQGAVGLGSKPVRLS 171
+AL Q LGS+ +R++
Sbjct: 1561568 KALD--QAGTKLGSRYLRIA 1561621
Score = 48.5 bits (114), Expect = 5e-06, Method: Composition-based stats.
Identities = 46/158 (29%), Positives = 67/158 (42%), Gaps = 2/158 (1%)
Frame = +2
Query: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
S+W+G L+P + E + F +G V SV++ + T GY +V F D A AEK L
Sbjct: 1561403 SIWVGGLDPDLQEQRLYDYFVRIG-PVTSVRVCVDSATQKSLGYGYVNFQDPADAEKALD 1561579
Query: 64 KINGKPLPGATPAKRFKLNYATYGKQPDN--SPEYSLFVGDLTPDVDDGMLYEFFVKVYP 121
+ G R+ L A + P S ++ V L VD L E F K +
Sbjct: 1561580 Q------AGTKLGSRY-LRIAKIQRDPSKRRSGVNNILVKKLPKTVDTYALKELFSK-FG 1561735
Query: 122 SCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQG 159
+ D+ G S+GY + F E A+ E G
Sbjct: 1561736 RLTAIGLACDEKGESRGYARISFEREESAVEAVKEMDG 1561849
Score = 37.0 bits (84), Expect = 0.016, Method: Composition-based stats.
Identities = 45/197 (22%), Positives = 86/197 (43%), Gaps = 16/197 (8%)
Frame = +2
Query: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPA--GYCFVEFADLATAEKC 61
+L++ +L+P + + + FA G V S K+ L G+ + G +V F A +
Sbjct: 1561928 NLYVKNLDPAVTDEKLRAFFARYG-AVSSAKV--RDLGGVQSEVGLGYVAFEKHEDAARA 1562098
Query: 62 LHKINGKPLPGATPAKRFKLN-------------YATYGKQPDNSPEYSLFVGDLTPDVD 108
+ ++NGK A ++ + +S +L+V V
Sbjct: 1562099 VEELNGKECEIAKAESTLDVSRFRSREERQRDRERQRRERAQQHSKYPNLYVKGFDDTVT 1562278
Query: 109 DGMLYEFFVKVYPSCRGGKVVLD-QTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKP 167
L E F + Y V++D +TG+S+ +GFV D+ +A+ E G+ L +P
Sbjct: 1562279 SERLEELFQR-YGETVSVTVMMDKETGMSRCFGFVSMKDQNAASQAIQELNGSTFLCPRP 1562455
Query: 168 VRLSVAIPKASRVKPVE 184
+ ++ A+ K +R + +E
Sbjct: 1562456 LFVTYALRKDARRQNLE 1562506
Score = 29.3 bits (64), Expect = 3.3, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Frame = +1
Query: 94 PEYSLFVGDLTPDVDDGMLYEFFVKV-YPSCRGGKVVLD-QTGVSKGYGFVKF 144
PE S+F+G++ D + ++ FF + + ++V D +TG KG+G+V+F
Sbjct: 979723 PETSIFLGNVAYDTTEEDVWNFFQEHGIRDVKRVRLVRDRETGDCKGFGYVEF 979881
>gi|154339085|ref|NC_009317.1| Leishmania braziliensis MHOM/BR/75/M2904
chromosome 25
Length = 923860
Score = 55.5 bits (132), Expect = 4e-08, Method: Composition-based stats.
Identities = 52/163 (31%), Positives = 74/163 (45%), Gaps = 4/163 (2%)
Frame = -2
Query: 4 SLWMGDLEPYMD--ENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKC 61
S+++GDL + E I+ F+++ V+SVK+ R+ T GY +V F A AEK
Sbjct: 21312 SVFVGDLPVDLPRPEEAINNLFSSIA-PVVSVKVCRDIATQRSLGYGYVNFQTTADAEKV 21136
Query: 62 LHKINGKPLPGATPAKRFKLNYATYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKV-- 119
+ +N G P + ++ +A S ++FV L V L F +
Sbjct: 21135 IDALN---FTGIAPGRYIRVMFAIRDPLQRKSGANNIFVKKLDAAVSAKALQAAFSRCGR 20965
Query: 120 YPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVG 162
SC KV LD G SKGYGFV+F K AL VG
Sbjct: 20964 VLSC---KVALDSEGHSKGYGFVQFETADGAKAALDMNGAKVG 20845
Score = 34.7 bits (78), Expect = 0.086, Method: Composition-based stats.
Identities = 24/75 (32%), Positives = 38/75 (50%)
Frame = -3
Query: 10 LEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKP 69
L P M+E + F G + SVKII +++TG GY FV++ +A + +N
Sbjct: 159974 LPPLMNEEQVCELFGQFGR-IESVKIIYDKITGESRGYGFVKYRFYFSATYAVSCLNRFE 159798
Query: 70 LPGATPAKRFKLNYA 84
+ G K+ K+ YA
Sbjct: 159797 IGG----KKLKVAYA 159765
Score = 34.3 bits (77), Expect = 0.097, Method: Composition-based stats.
Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Frame = -2
Query: 90 PDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLD-QTGVSKGYGFVKFTDEL 148
P+ +L V + VD+ L + F + Y K+V D +T S+GYGFVK+
Sbjct: 143379 PEPEALRNLMVNYIPTTVDEMQLRQLFER-YGPIETVKIVCDRETRQSRGYGFVKYCSAA 143203
Query: 149 EQKRALTECQGAVGLGSKPVRLSVAIPKASRVKP 182
++A+ E G + +K +++++A R +P
Sbjct: 143202 SAQQAVNELNG-FNILNKRLKVALAASGNQRQRP 143104
Score = 34.3 bits (77), Expect = 0.10, Method: Composition-based stats.
Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Frame = -1
Query: 90 PDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLD-QTGVSKGYGFVKFTDEL 148
P+ +L V + VD+ L + F + Y K+V D +T S+GYGFVK+
Sbjct: 151888 PEPEALRNLMVNYIPTTVDEMQLRQLFER-YGPIETVKIVCDRETRQSRGYGFVKYCSAA 151712
Query: 149 EQKRALTECQGAVGLGSKPVRLSVAIPKASRVKP 182
++A+ E G + +K +++++A R +P
Sbjct: 151711 SAQQAVNELNG-FNILNKRLKVALAASGNQRQRP 151613
Score = 33.5 bits (75), Expect = 0.20, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 41/76 (53%)
Frame = -2
Query: 14 MDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGA 73
+DE + + F G + +VKI+ +R T GY FV++ A+A++ ++++NG +
Sbjct: 143328 VDEMQLRQLFERYG-PIETVKIVCDRETRQSRGYGFVKYCSAASAQQAVNELNGFNILN- 143155
Query: 74 TPAKRFKLNYATYGKQ 89
KR K+ A G Q
Sbjct: 143154 ---KRLKVALAASGNQ 143116
Score = 33.1 bits (74), Expect = 0.22, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 41/76 (53%)
Frame = -1
Query: 14 MDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGA 73
+DE + + F G + +VKI+ +R T GY FV++ A+A++ ++++NG +
Sbjct: 151837 VDEMQLRQLFERYG-PIETVKIVCDRETRQSRGYGFVKYCSAASAQQAVNELNGFNILN- 151664
Query: 74 TPAKRFKLNYATYGKQ 89
KR K+ A G Q
Sbjct: 151663 ---KRLKVALAASGNQ 151625
Score = 31.6 bits (70), Expect = 0.66, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 58/120 (48%), Gaps = 11/120 (9%)
Frame = -3
Query: 71 PGATPAKRFKLN---------YATYGKQP-DNSPEYSLFVGDLTPDVDDGMLYEFFVKVY 120
P ++PA+R ++T+G D +L V L P +++ + E F + +
Sbjct: 160100 PSSSPAQRSNPESVVAAVAGAHSTFGGCAFDPDALRNLIVNYLPPLMNEEQVCELFGQ-F 159924
Query: 121 PSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKASR 179
K++ D+ TG S+GYGFVK+ A++ C +G K ++++ A +A++
Sbjct: 159923 GRIESVKIIYDKITGESRGYGFVKYRFYFSATYAVS-CLNRFEIGGKKLKVAYANVQAAK 159747
>gi|154335720|ref|NC_009310.1| Leishmania braziliensis MHOM/BR/75/M2904
chromosome 18
Length = 708397
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 38/118 (32%), Positives = 52/118 (44%), Gaps = 4/118 (3%)
Frame = -1
Query: 57 TAEKCLHKING---KPLPGATPAKRFKLNYATYGKQPDNSPEYSLFVGDLTPDVDDGMLY 113
TA+K +K NG + P T A KLN L V L VDD + +
Sbjct: 92533 TAKKMSYKYNGAYNRGRPSVTTATDSKLN---------------LLVRFLDHTVDD-VQF 92402
Query: 114 EFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRL 170
F + + V+ D TG S+G+GFV+F + RAL EC G +G K V +
Sbjct: 92401 RVFFEPFGDITSSMVMRDIFTGESRGFGFVRFARNADATRALHECDGK-KIGGKAVNV 92231
>gi|154342106|ref|NC_009322.1| Leishmania braziliensis MHOM/BR/75/M2904
chromosome 30
Length = 1359875
Score = 38.5 bits (88), Expect = 0.005, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Frame = -1
Query: 77 KRFKLNYATYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLD-QTGV 135
+ +KL YA K + +LFV L ++ D L + F++ +P+ KV+LD TG
Sbjct: 734594 RSYKL*YAV--KTKIMTTLQNLFVAKLPRNLTDADLEQIFLEYHPT--NAKVMLDATTGR 734427
Query: 136 SKGYGFVKFTDE 147
SKG+GFV F E
Sbjct: 734426 SKGFGFVLFESE 734391
Score = 35.8 bits (81), Expect = 0.038, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = -2
Query: 97 SLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRA 153
+LFV L ++ D L F + P K++LD TG SKG+GFV F +E + +A
Sbjct: 741214 NLFVAKLPRNISDADLLNIFTEFGPF--SAKIMLDAATGKSKGFGFVLFDEEEKGAKA 741047
Score = 31.2 bits (69), Expect = 0.96, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 33/69 (47%)
Frame = -2
Query: 2 AASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKC 61
+ ++++G+L Y E + F+ G + + + N T P G+CFV F A A
Sbjct: 206368 STTVYVGNLSFYTTEEQLYSHFSPCGH-IRDIVMGLNEATRCPCGFCFVVFESQAAAVLA 206192
Query: 62 LHKINGKPL 70
+ ++G L
Sbjct: 206191 VQGLDGSLL 206165
Score = 27.7 bits (60), Expect = 9.5, Method: Composition-based stats.
Identities = 19/83 (22%), Positives = 33/83 (39%), Gaps = 3/83 (3%)
Frame = +3
Query: 5 LWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKC--- 61
LW+G+L PY+ ++ F G ++ R+ + F T E+C
Sbjct: 392877 LWVGNLVPYITNEKLTEVFEVFGPISSVSRLGRSNMA----------FLHYETVEQCTMA 393026
Query: 62 LHKINGKPLPGATPAKRFKLNYA 84
+ + G+P+ G LNY
Sbjct: 393027 IETMKGRPIEGVM----LSLNYG 393083
>gi|154341365|ref|NC_009321.1| Leishmania braziliensis MHOM/BR/75/M2904
chromosome 29
Length = 1190324
Score = 35.4 bits (80), Expect = 0.052, Method: Composition-based stats.
Identities = 28/97 (28%), Positives = 41/97 (42%), Gaps = 11/97 (11%)
Frame = +1
Query: 90 PDNSPEY--SLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLD-QTGVSKGYGFVKFTD 146
P N Y L V L DV L+ F + P G +++ D QT + +GYGFV F
Sbjct: 1155409 PSNDERYRKQLIVNYLAQDVTSADLHTLFARFGP-LDGARIIFDRQTSMPRGYGFVYFRY 1155585
Query: 147 ELEQKRALTECQG--------AVGLGSKPVRLSVAIP 175
K+A+ G VG + P+ + + P
Sbjct: 1155586 PDSAKQAVDSMNGYEFHGKRLKVGYSTNPLNIISSAP 1155696
Score = 28.5 bits (62), Expect = 5.3, Method: Composition-based stats.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -2
Query: 132 QTGVSKGYGFVKFTDELEQKRAL 154
TGV G GFV+++D +E RAL
Sbjct: 1179325 HTGVGLGTGFVRYSDHMEACRAL 1179257
>gi|154335056|ref|NC_009308.1| Leishmania braziliensis MHOM/BR/75/M2904
chromosome 16
Length = 696353
Score = 33.5 bits (75), Expect = 0.18, Method: Composition-based stats.
Identities = 38/133 (28%), Positives = 55/133 (41%), Gaps = 17/133 (12%)
Frame = +1
Query: 7 MGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH--- 63
M +L P E + R FA V++V+I+R+ TG Y FVEF + A K +
Sbjct: 647647 MANLHPETVEEDL-RHFADQFGRVLNVRIVRHHKTGKSRRYAFVEFNLVGEARKAIQFHR 647823
Query: 64 ------------KINGKPLPGATPAKRFKLNYATYGKQPDN--SPEYSLFVGDLTPDVDD 109
K G+ PG P KR + A++ P N SP S+ + + D
Sbjct: 647824 KKRLKGYSIIIDKEKGRTEPGFLP-KRLEAA-ASFWTSPANGLSPASSIEMAE-AKRTDS 647994
Query: 110 GMLYEFFVKVYPS 122
L +K PS
Sbjct: 647995 AALGPGSIKAIPS 648033
>gi|154343652|ref|NC_009324.1| Leishmania braziliensis MHOM/BR/75/M2904
chromosome 32
Length = 1579615
Score = 30.8 bits (68), Expect = 1.1, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -1
Query: 120 YPSCRGGKVVLDQTGVSKGYGFVKFTD 146
Y R K++ D GVS+GYGF++F +
Sbjct: 1126813 YGPIRNVKLLKDTAGVSRGYGFIEFVN 1126733
>gi|154333023|ref|NC_009301.1| Leishmania braziliensis MHOM/BR/75/M2904
chromosome 9
Length = 556710
Score = 30.8 bits (68), Expect = 1.2, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 30/50 (60%)
Frame = +2
Query: 132 QTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKASRVK 181
+TG+ KGYGFV F +E + ++ QG + + +++ +A P+AS K
Sbjct: 16682 KTGLCKGYGFVLFENEQDALNSVIALQGH-SIRNTRIQVRLARPEASAKK 16828
Score = 28.5 bits (62), Expect = 6.3, Method: Composition-based stats.
Identities = 26/94 (27%), Positives = 39/94 (41%), Gaps = 1/94 (1%)
Frame = +1
Query: 74 TPAKRFKLNYATYGKQPD-NSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ 132
+P K L+ + P + + +L+V L D L+E F + P +
Sbjct: 35710 SPMKNESLSMSMQASDPAARAYDSNLYVASLPEWFTDADLHELFKRFGPIVSAKVMCHKG 35889
Query: 133 TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSK 166
T KGYGFV F + A +E G V G+K
Sbjct: 35890 THHCKGYGFVLFQHTDDAAVARSEMIGHVVGGNK 35991
>gi|154333356|ref|NC_009302.1| Leishmania braziliensis MHOM/BR/75/M2904
chromosome 10
Length = 612479
Score = 28.5 bits (62), Expect = 5.4, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Frame = -1
Query: 133 TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVA--IPKASRV 180
T +KG FV+F + RAL C+GA+ +G + +R+S A P + RV
Sbjct: 330752 TRQNKGAAFVRFFSAEDAVRALRLCRGAILMG-RLLRVSAAEEDPHSKRV 330606
TBLASTN 2.2.17 [Aug-26-2007]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= gi|62821783|ref|NP_082201.2| tRNA selenocysteine associated
protein 1 [Mus musculus]
(287 letters)
Database: genome.fa
35 sequences; 31,379,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|154345382|ref|NC_009326.1| Leishmania braziliensis MHOM/BR/75... 76 4e-14
gi|154339085|ref|NC_009317.1| Leishmania braziliensis MHOM/BR/75... 55 5e-08
gi|154335720|ref|NC_009310.1| Leishmania braziliensis MHOM/BR/75... 40 0.003
gi|154342106|ref|NC_009322.1| Leishmania braziliensis MHOM/BR/75... 39 0.006
gi|154335056|ref|NC_009308.1| Leishmania braziliensis MHOM/BR/75... 33 0.18
gi|154341365|ref|NC_009321.1| Leishmania braziliensis MHOM/BR/75... 32 0.49
gi|154343652|ref|NC_009324.1| Leishmania braziliensis MHOM/BR/75... 31 1.2
gi|154333023|ref|NC_009301.1| Leishmania braziliensis MHOM/BR/75... 29 4.5
gi|154333356|ref|NC_009302.1| Leishmania braziliensis MHOM/BR/75... 29 5.1
gi|154340161|ref|NC_009319.1| Leishmania braziliensis MHOM/BR/75... 28 8.7
>gi|154345382|ref|NC_009326.1| Leishmania braziliensis MHOM/BR/75/M2904
chromosome 34
Length = 2012684
Score = 75.9 bits (185), Expect = 4e-14, Method: Composition-based stats.
Identities = 53/162 (32%), Positives = 88/162 (54%), Gaps = 4/162 (2%)
Frame = +2
Query: 3 ASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCL 62
AS+++GDL+ ++E + F G T+++V++ R+ +T GY +V F + +AE+ +
Sbjct: 1868852 ASIYVGDLDAAINEPQLVELFKPFG-TILNVRVCRDIITQRSLGYGYVNFDNHHSAERAI 1869028
Query: 63 HKINGKPLPGATPAKRFKLNYATYGKQPDNSPEYS----LFVGDLTPDVDDGMLYEFFVK 118
+N + + K +L + +Q D S YS +FV +L DVD L++ F K
Sbjct: 1869029 ESMNFRRVGD----KCVRLMW----QQRDPSLRYSGNGNVFVKNLEKDVDSKSLHDIFTK 1869184
Query: 119 VYPSCRGGKVVLDPTGVSKGYGFVKFTDELEQKRALTECQGA 160
+ S KV+ D G S+GYGFV F DE+ K A+ + GA
Sbjct: 1869185 -FGSILSCKVMEDEEGKSRGYGFVHFKDEISAKDAIVKMNGA 1869307
Score = 48.5 bits (114), Expect = 5e-06, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 44/80 (55%)
Frame = +2
Query: 92 NSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDPTGVSKGYGFVKFTDELEQK 151
+ P S++VG L PD+ + LY++FV++ P V T S GYG+V F D + +
Sbjct: 1561388 SGPNPSIWVGGLDPDLQEQRLYDYFVRIGPVTSVRVCVDSATQKSLGYGYVNFQDPADAE 1561567
Query: 152 RALTECQGAVGLGCKPVRLS 171
+AL Q LG + +R++
Sbjct: 1561568 KALD--QAGTKLGSRYLRIA 1561621
Score = 48.1 bits (113), Expect = 7e-06, Method: Composition-based stats.
Identities = 46/158 (29%), Positives = 66/158 (41%), Gaps = 2/158 (1%)
Frame = +2
Query: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
S+W+G L+P + E + F +G V SV++ + T GY +V F D A AEK L
Sbjct: 1561403 SIWVGGLDPDLQEQRLYDYFVRIG-PVTSVRVCVDSATQKSLGYGYVNFQDPADAEKALD 1561579
Query: 64 KINGKPLPGATPAKRFKLNYATYGKQPDN--SPEYSLFVGDLTPDVDDGMLYEFFVKVYP 121
+ G R+ L A + P S ++ V L VD L E F K +
Sbjct: 1561580 Q------AGTKLGSRY-LRIAKIQRDPSKRRSGVNNILVKKLPKTVDTYALKELFSK-FG 1561735
Query: 122 SCRGGKVVLDPTGVSKGYGFVKFTDELEQKRALTECQG 159
+ D G S+GY + F E A+ E G
Sbjct: 1561736 RLTAIGLACDEKGESRGYARISFEREESAVEAVKEMDG 1561849
Score = 28.1 bits (61), Expect = 7.6, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Frame = +1
Query: 94 PEYSLFVGDLTPDVDDGMLYEFFVKV-YPSCRGGKVVLD-PTGVSKGYGFVKF 144
PE S+F+G++ D + ++ FF + + ++V D TG KG+G+V+F
Sbjct: 979723 PETSIFLGNVAYDTTEEDVWNFFQEHGIRDVKRVRLVRDRETGDCKGFGYVEF 979881
>gi|154339085|ref|NC_009317.1| Leishmania braziliensis MHOM/BR/75/M2904
chromosome 25
Length = 923860
Score = 55.5 bits (132), Expect = 5e-08, Method: Composition-based stats.
Identities = 52/163 (31%), Positives = 74/163 (45%), Gaps = 4/163 (2%)
Frame = -2
Query: 4 SLWMGDLEPYMD--ENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKC 61
S+++GDL + E I+ F+++ V+SVK+ R+ T GY +V F A AEK
Sbjct: 21312 SVFVGDLPVDLPRPEEAINNLFSSIA-PVVSVKVCRDIATQRSLGYGYVNFQTTADAEKV 21136
Query: 62 LHKINGKPLPGATPAKRFKLNYATYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKV-- 119
+ +N G P + ++ +A S ++FV L V L F +
Sbjct: 21135 IDALN---FTGIAPGRYIRVMFAIRDPLQRKSGANNIFVKKLDAAVSAKALQAAFSRCGR 20965
Query: 120 YPSCRGGKVVLDPTGVSKGYGFVKFTDELEQKRALTECQGAVG 162
SC KV LD G SKGYGFV+F K AL VG
Sbjct: 20964 VLSC---KVALDSEGHSKGYGFVQFETADGAKAALDMNGAKVG 20845
Score = 34.7 bits (78), Expect = 0.082, Method: Composition-based stats.
Identities = 24/75 (32%), Positives = 38/75 (50%)
Frame = -3
Query: 10 LEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKP 69
L P M+E + F G + SVKII +++TG GY FV++ +A + +N
Sbjct: 159974 LPPLMNEEQVCELFGQFGR-IESVKIIYDKITGESRGYGFVKYRFYFSATYAVSCLNRFE 159798
Query: 70 LPGATPAKRFKLNYA 84
+ G K+ K+ YA
Sbjct: 159797 IGG----KKLKVAYA 159765
Score = 33.1 bits (74), Expect = 0.22, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 41/76 (53%)
Frame = -1
Query: 14 MDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGA 73
+DE + + F G + +VKI+ +R T GY FV++ A+A++ ++++NG +
Sbjct: 151837 VDEMQLRQLFERYG-PIETVKIVCDRETRQSRGYGFVKYCSAASAQQAVNELNGFNILN- 151664
Query: 74 TPAKRFKLNYATYGKQ 89
KR K+ A G Q
Sbjct: 151663 ---KRLKVALAASGNQ 151625
Score = 33.1 bits (74), Expect = 0.24, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 41/76 (53%)
Frame = -2
Query: 14 MDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGA 73
+DE + + F G + +VKI+ +R T GY FV++ A+A++ ++++NG +
Sbjct: 143328 VDEMQLRQLFERYG-PIETVKIVCDRETRQSRGYGFVKYCSAASAQQAVNELNGFNILN- 143155
Query: 74 TPAKRFKLNYATYGKQ 89
KR K+ A G Q
Sbjct: 143154 ---KRLKVALAASGNQ 143116
Score = 32.0 bits (71), Expect = 0.48, Method: Composition-based stats.
Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Frame = -1
Query: 90 PDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLD-PTGVSKGYGFVKFTDEL 148
P+ +L V + VD+ L + F + Y K+V D T S+GYGFVK+
Sbjct: 151888 PEPEALRNLMVNYIPTTVDEMQLRQLFER-YGPIETVKIVCDRETRQSRGYGFVKYCSAA 151712
Query: 149 EQKRALTECQGAVGLGCKPVRLSVAIPKASRVKP 182
++A+ E G L K +++++A R +P
Sbjct: 151711 SAQQAVNELNGFNILN-KRLKVALAASGNQRQRP 151613
Score = 32.0 bits (71), Expect = 0.53, Method: Composition-based stats.
Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Frame = -2
Query: 90 PDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLD-PTGVSKGYGFVKFTDEL 148
P+ +L V + VD+ L + F + Y K+V D T S+GYGFVK+
Sbjct: 143379 PEPEALRNLMVNYIPTTVDEMQLRQLFER-YGPIETVKIVCDRETRQSRGYGFVKYCSAA 143203
Query: 149 EQKRALTECQGAVGLGCKPVRLSVAIPKASRVKP 182
++A+ E G L K +++++A R +P
Sbjct: 143202 SAQQAVNELNGFNILN-KRLKVALAASGNQRQRP 143104
Score = 29.6 bits (65), Expect = 2.3, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 57/120 (47%), Gaps = 11/120 (9%)
Frame = -3
Query: 71 PGATPAKRFKLN---------YATYGKQP-DNSPEYSLFVGDLTPDVDDGMLYEFFVKVY 120
P ++PA+R ++T+G D +L V L P +++ + E F + +
Sbjct: 160100 PSSSPAQRSNPESVVAAVAGAHSTFGGCAFDPDALRNLIVNYLPPLMNEEQVCELFGQ-F 159924
Query: 121 PSCRGGKVVLDP-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGCKPVRLSVAIPKASR 179
K++ D TG S+GYGFVK+ A++ C +G K ++++ A +A++
Sbjct: 159923 GRIESVKIIYDKITGESRGYGFVKYRFYFSATYAVS-CLNRFEIGGKKLKVAYANVQAAK 159747
>gi|154335720|ref|NC_009310.1| Leishmania braziliensis MHOM/BR/75/M2904
chromosome 18
Length = 708397
Score = 39.7 bits (91), Expect = 0.003, Method: Composition-based stats.
Identities = 35/107 (32%), Positives = 47/107 (43%), Gaps = 4/107 (3%)
Frame = -1
Query: 57 TAEKCLHKING---KPLPGATPAKRFKLNYATYGKQPDNSPEYSLFVGDLTPDVDDGMLY 113
TA+K +K NG + P T A KLN L V L VDD + +
Sbjct: 92533 TAKKMSYKYNGAYNRGRPSVTTATDSKLN---------------LLVRFLDHTVDD-VQF 92402
Query: 114 EFFVKVYPSCRGGKVVLDP-TGVSKGYGFVKFTDELEQKRALTECQG 159
F + + V+ D TG S+G+GFV+F + RAL EC G
Sbjct: 92401 RVFFEPFGDITSSMVMRDIFTGESRGFGFVRFARNADATRALHECDG 92261
Score = 32.3 bits (72), Expect = 0.40, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
Frame = +3
Query: 98 LFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDPTGVSKGYGFVKFTDELEQKRALTEC 157
LFVG + + L F + + S K++ +P G SKG +V++ E +RA++
Sbjct: 243984 LFVGQVPAVCTEDQLRPLFAQ-FGSLLEIKIMREPNGRSKGSAWVRYESEESAQRAISSL 244160
Query: 158 --QGAVGLGCKPVRLSVAIPKASRVKPV 183
+ V P+R+ A P +R+ V
Sbjct: 244161 NEKHVVPPQTNPLRVQFAAPSTNRMSQV 244244
>gi|154342106|ref|NC_009322.1| Leishmania braziliensis MHOM/BR/75/M2904
chromosome 30
Length = 1359875
Score = 38.5 bits (88), Expect = 0.006, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Frame = -1
Query: 77 KRFKLNYATYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDPT-GV 135
+ +KL YA K + +LFV L ++ D L + F++ +P+ KV+LD T G
Sbjct: 734594 RSYKL*YAV--KTKIMTTLQNLFVAKLPRNLTDADLEQIFLEYHPT--NAKVMLDATTGR 734427
Query: 136 SKGYGFVKFTDE 147
SKG+GFV F E
Sbjct: 734426 SKGFGFVLFESE 734391
Score = 35.8 bits (81), Expect = 0.038, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = -2
Query: 97 SLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDP-TGVSKGYGFVKFTDELEQKRA 153
+LFV L ++ D L F + P K++LD TG SKG+GFV F +E + +A
Sbjct: 741214 NLFVAKLPRNISDADLLNIFTEFGPF--SAKIMLDAATGKSKGFGFVLFDEEEKGAKA 741047
Score = 31.2 bits (69), Expect = 0.96, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 33/69 (47%)
Frame = -2
Query: 2 AASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKC 61
+ ++++G+L Y E + F+ G + + + N T P G+CFV F A A
Sbjct: 206368 STTVYVGNLSFYTTEEQLYSHFSPCGH-IRDIVMGLNEATRCPCGFCFVVFESQAAAVLA 206192
Query: 62 LHKINGKPL 70
+ ++G L
Sbjct: 206191 VQGLDGSLL 206165
Score = 27.7 bits (60), Expect = 9.9, Method: Composition-based stats.
Identities = 19/83 (22%), Positives = 33/83 (39%), Gaps = 3/83 (3%)
Frame = +3
Query: 5 LWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKC--- 61
LW+G+L PY+ ++ F G ++ R+ + F T E+C
Sbjct: 392877 LWVGNLVPYITNEKLTEVFEVFGPISSVSRLGRSNMA----------FLHYETVEQCTMA 393026
Query: 62 LHKINGKPLPGATPAKRFKLNYA 84
+ + G+P+ G LNY
Sbjct: 393027 IETMKGRPIEGVM----LSLNYG 393083
>gi|154335056|ref|NC_009308.1| Leishmania braziliensis MHOM/BR/75/M2904
chromosome 16
Length = 696353
Score = 33.5 bits (75), Expect = 0.18, Method: Composition-based stats.
Identities = 38/133 (28%), Positives = 55/133 (41%), Gaps = 17/133 (12%)
Frame = +1
Query: 7 MGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH--- 63
M +L P E + R FA V++V+I+R+ TG Y FVEF + A K +
Sbjct: 647647 MANLHPETVEEDL-RHFADQFGRVLNVRIVRHHKTGKSRRYAFVEFNLVGEARKAIQFHR 647823
Query: 64 ------------KINGKPLPGATPAKRFKLNYATYGKQPDN--SPEYSLFVGDLTPDVDD 109
K G+ PG P KR + A++ P N SP S+ + + D
Sbjct: 647824 KKRLKGYSIIIDKEKGRTEPGFLP-KRLEAA-ASFWTSPANGLSPASSIEMAE-AKRTDS 647994
Query: 110 GMLYEFFVKVYPS 122
L +K PS
Sbjct: 647995 AALGPGSIKAIPS 648033
>gi|154341365|ref|NC_009321.1| Leishmania braziliensis MHOM/BR/75/M2904
chromosome 29
Length = 1190324
Score = 32.0 bits (71), Expect = 0.49, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 39/97 (40%), Gaps = 11/97 (11%)
Frame = +1
Query: 90 PDNSPEY--SLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLD-PTGVSKGYGFVKFTD 146
P N Y L V L DV L+ F + P G +++ D T + +GYGFV F
Sbjct: 1155409 PSNDERYRKQLIVNYLAQDVTSADLHTLFARFGP-LDGARIIFDRQTSMPRGYGFVYFRY 1155585
Query: 147 ELEQKRALTECQG--------AVGLGCKPVRLSVAIP 175
K+A+ G VG P+ + + P
Sbjct: 1155586 PDSAKQAVDSMNGYEFHGKRLKVGYSTNPLNIISSAP 1155696
Score = 28.5 bits (62), Expect = 6.2, Method: Composition-based stats.
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = -2
Query: 133 TGVSKGYGFVKFTDELEQKRAL 154
TGV G GFV+++D +E RAL
Sbjct: 1179322 TGVGLGTGFVRYSDHMEACRAL 1179257
>gi|154343652|ref|NC_009324.1| Leishmania braziliensis MHOM/BR/75/M2904
chromosome 32
Length = 1579615
Score = 30.8 bits (68), Expect = 1.2, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -1
Query: 120 YPSCRGGKVVLDPTGVSKGYGFVKFTD 146
Y R K++ D GVS+GYGF++F +
Sbjct: 1126813 YGPIRNVKLLKDTAGVSRGYGFIEFVN 1126733
>gi|154333023|ref|NC_009301.1| Leishmania braziliensis MHOM/BR/75/M2904
chromosome 9
Length = 556710
Score = 28.9 bits (63), Expect = 4.5, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 28/49 (57%)
Frame = +2
Query: 133 TGVSKGYGFVKFTDELEQKRALTECQGAVGLGCKPVRLSVAIPKASRVK 181
TG+ KGYGFV F +E + ++ QG + +++ +A P+AS K
Sbjct: 16685 TGLCKGYGFVLFENEQDALNSVIALQGH-SIRNTRIQVRLARPEASAKK 16828
>gi|154333356|ref|NC_009302.1| Leishmania braziliensis MHOM/BR/75/M2904
chromosome 10
Length = 612479
Score = 28.9 bits (63), Expect = 5.1, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Frame = -1
Query: 133 TGVSKGYGFVKFTDELEQKRALTECQGAVGLGCKPVRLSVA--IPKASRV 180
T +KG FV+F + RAL C+GA+ +G + +R+S A P + RV
Sbjct: 330752 TRQNKGAAFVRFFSAEDAVRALRLCRGAILMG-RLLRVSAAEEDPHSKRV 330606
>gi|154340161|ref|NC_009319.1| Leishmania braziliensis MHOM/BR/75/M2904
chromosome 27
Length = 1217395
Score = 27.7 bits (60), Expect = 8.7, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = -3
Query: 140 GFVKFTDELEQKRALTECQGAVGLGCKPVRLSVAIPKASRVKP 182
GF+K L Q L E G LGC RL + + +SR++P
Sbjct: 554894 GFLKHEPLLPQSHVLYEEAGVDVLGCL*PRLVIPLKLSSRLEP 554766