TBLASTN 2.2.16 [Mar-25-2007]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|140256453|ref|NC_009276.1|:subseq(17246,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 6:[revcomp]
(166 letters)
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
8,328,840 sequences; 713,659,451 total letters
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
emb|AM494943.1| Leishmania braziliensis chromosome 6 208 5e-52
emb|AM494959.1| Leishmania braziliensis chromosome 22 90 9e-38
>emb|AM494943.1| Leishmania braziliensis chromosome 6
Length = 526431
Score = 208 bits (529), Expect = 5e-52, Method: Composition-based stats.
Identities = 127/166 (76%), Positives = 127/166 (76%)
Frame = -3
Query: 1 AMLRRKSATVKLSDMQLXEXEAGEEANHLWAATPVQLMSSSGRECLSCXGHNPLRLLVUR 60
AMLRRKSATVKLSDMQL E EAGEEANHLWAATPVQLMSSSGRECLSC GHNPLRLLV R
Sbjct: 509185 AMLRRKSATVKLSDMQL*E*EAGEEANHLWAATPVQLMSSSGRECLSC*GHNPLRLLV*R 509006
Query: 61 RSSTATSSPCFTWSKADSSALLRTXXXXXXXXXXXXXXXKMGEWVCMAISAKREXXXXXX 120
RSSTATSSPCFTWSKADSSALLRT KMGEWVCMAISAKRE
Sbjct: 509005 RSSTATSSPCFTWSKADSSALLRTFWLPFLPPHRPPFRFKMGEWVCMAISAKRE****** 508826
Query: 121 MRATVYDXXXXXXXXXXXXXXQAVFPKEGIGSHCLHCAKDSLCSFA 166
MRATVYD QAVFPKEGIGSHCLHCAKDSLCSFA
Sbjct: 508825 MRATVYDGRGGAAGHSRARCGQAVFPKEGIGSHCLHCAKDSLCSFA 508688
>emb|AM494959.1| Leishmania braziliensis chromosome 22
Length = 657844
Score = 90.1 bits (222), Expect(3) = 9e-38, Method: Composition-based stats.
Identities = 52/77 (67%), Positives = 52/77 (67%)
Frame = +2
Query: 51 HNPLRLLVURRSSTATSSPCFTWSKADSSALLRTXXXXXXXXXXXXXXXKMGEWVCMAIS 110
HNPLRLL RRSSTAT SPCFTWSKADSSALLRT KMGEWVCMAIS
Sbjct: 14189 HNPLRLLARRRSSTATGSPCFTWSKADSSALLRTFWLPFLPPHRRPFRFKMGEWVCMAIS 14368
Query: 111 AKREXXXXXXMRATVYD 127
AKRE M ATVYD
Sbjct: 14369 AKRE-*****M*ATVYD 14416
Score = 63.5 bits (153), Expect(3) = 9e-38, Method: Composition-based stats.
Identities = 45/51 (88%), Positives = 45/51 (88%)
Frame = +3
Query: 1 AMLRRKSATVKLSDMQLXEXEAGEEANHLWAATPVQLMSSSGRECLSCXGH 51
AMLRRKSATVKLSDMQL E EAGEEANHLWAATPVQLMSS RECLSC H
Sbjct: 14037 AMLRRKSATVKLSDMQL*E*EAGEEANHLWAATPVQLMSSGRRECLSC*DH 14189
Score = 49.3 bits (116), Expect(3) = 9e-38, Method: Composition-based stats.
Identities = 23/25 (92%), Positives = 24/25 (96%)
Frame = +3
Query: 142 QAVFPKEGIGSHCLHCAKDSLCSFA 166
QAVFPKEGIGSHCL CAKDS+CSFA
Sbjct: 14457 QAVFPKEGIGSHCLLCAKDSVCSFA 14531
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.356 0.149 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 480449111
Number of extensions: 5515295
Number of successful extensions: 78731
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 78718
Number of HSP's successfully gapped: 0
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 14 (7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (18.9 bits)
S2: 78 (34.7 bits)
Query= gi|140256453|ref|NC_009276.1|:subseq(17246,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 6:[revcomp]
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
emb|AM494943.1| Leishmania braziliensis chromosome 6 234 6e-60
emb|AM494959.1| Leishmania braziliensis chromosome 22 103 2e-20
>emb|AM494943.1| Leishmania braziliensis chromosome 6
Length = 526431
Score = 234 bits (598), Expect = 6e-60, Method: Composition-based stats.
Identities = 140/166 (84%), Positives = 140/166 (84%)
Frame = -1
Query: 1 RCUDEKVQQUNUVTCNSKSKKPEKKQTTCGLLHPCNUCLRAGVSVSPVRATIXXXXXXXX 60
RC DEKVQQ N VTCNSKSKKPEKKQTTCGLLHPCN CLRAGVSVSPVRATI
Sbjct: 509184 RC*DEKVQQ*N*VTCNSKSKKPEKKQTTCGLLHPCN*CLRAGVSVSPVRATILCACLCDA 509005
Query: 61 XXXXRPAVLASHGVKRIQVPCUGHSGFLSCRLTVLLSALRWANGSAWPSQQXXXXXXXXK 120
RPAVLASHGVKRIQVPC GHSGFLSCRLTVLLSALRWANGSAWPSQQ K
Sbjct: 509004 VAALRPAVLASHGVKRIQVPC*GHSGFLSCRLTVLLSALRWANGSAWPSQQNENNNNNNK 508825
Query: 121 CEPPCMTEGGGQRGTVELAVVKPCFPRRGXAAIACIVPRIHFVPSR 166
CEPPCMTEGGGQRGTVELAVVKPCFPRRG AAIACIVPRIHFVPSR
Sbjct: 508824 CEPPCMTEGGGQRGTVELAVVKPCFPRRG*AAIACIVPRIHFVPSR 508687
>emb|AM494959.1| Leishmania braziliensis chromosome 22
Length = 657844
Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats.
Identities = 60/85 (70%), Positives = 63/85 (74%)
Frame = +3
Query: 65 RPAVLASHGVKRIQVPCUGHSGFLSCRLTVLLSALRWANGSAWPSQQXXXXXXXXKCEPP 124
RPAVLASHGVKRIQVPC GHSGFLSCRLTV+LSALRWANGSAWPSQQ KCEPP
Sbjct: 14232 RPAVLASHGVKRIQVPC*GHSGFLSCRLTVVLSALRWANGSAWPSQQ-NENNNNNKCEPP 14408
Query: 125 CMTEGGGQRGTVELAVVKPCFPRRG 149
CMTEGG G + FP+ G
Sbjct: 14409 CMTEGGAA-GHSRARCGQAVFPKEG 14480
Score = 102 bits (253), Expect = 6e-20, Method: Composition-based stats.
Identities = 85/174 (48%), Positives = 95/174 (54%), Gaps = 9/174 (5%)
Frame = +1
Query: 1 RCUDEKVQQUNUVTCNSKSKKPEKKQTTCGLLHPCNUCLRAGVSVSPVRATIXXXXXXXX 60
RC DEKVQQ N VTCNSKSKKPEKKQTTCGLLHPCN CLRAGVSVSPVR T
Sbjct: 14038 RC*DEKVQQ*N*VTCNSKSKKPEKKQTTCGLLHPCN*CLRAGVSVSPVRTT*SSAPA--- 14208
Query: 61 XXXXRPAVLASHGVKRIQVPCUGHSGFLSCRLTVLLSALRWANGSAWPSQQXXXXXXXXK 120
R + SGF C + +L++ A+ S++P
Sbjct: 14209 ------CATPQQHCDRQSLLHME*SGF-KCLVEDILASFLAASPSSFPL*DGRMGLHGHL 14367
Query: 121 CEPPCMT---------EGGGQRGTVELAVVKPCFPRRGXAAIACIVPRIHFVPS 165
+ + GGQRGTVELAVVKPCFPRRG AA C VPRI F PS
Sbjct: 14368 SKTRIIIIINVSHRV*RKGGQRGTVELAVVKPCFPRRG*AATVCFVPRIQFAPS 14529
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.326 0.137 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 625356315
Number of extensions: 9484052
Number of successful extensions: 54088
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 54082
Number of HSP's successfully gapped: 0
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 15 (7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.0 bits)
S2: 78 (34.7 bits)
Query= gi|140256453|ref|NC_009276.1|:subseq(17246,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 6:[revcomp]
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
emb|AM494943.1| Leishmania braziliensis chromosome 6 210 1e-52
emb|AM494959.1| Leishmania braziliensis chromosome 22 93 1e-41
>emb|AM494943.1| Leishmania braziliensis chromosome 6
Length = 526431
Score = 210 bits (534), Expect = 1e-52, Method: Composition-based stats.
Identities = 127/166 (76%), Positives = 127/166 (76%)
Frame = -2
Query: 1 DAETKKCNSEIEUHATLXXXXXXXXXXXXGCYTRATDVFERAUVSLLLGPQSSAPACVTP 60
DAETKKCNSEIE HATL GCYTRATDVFERA VSLLLGPQSSAPACVTP
Sbjct: 509183 DAETKKCNSEIE*HATLRVRSRRRSKPPVGCYTRATDVFERA*VSLLLGPQSSAPACVTP 509004
Query: 61 XQHCDQQSLLHMEXSGFKCLVEDIXXXXXXXXXXXXXXXDGRMGLHGHLSKTRXXXXXXN 120
QHCDQQSLLHME SGFKCLVEDI DGRMGLHGHLSKTR N
Sbjct: 509003 *QHCDQQSLLHME*SGFKCLVEDILASFLAASPSSFPL*DGRMGLHGHLSKTRIIIIIIN 508824
Query: 121 ASHRVURKGGGSGAQXSSLWSSRVSQGGDRQPLPALCQGFTLFLRA 166
ASHRV RKGGGSGAQ SSLWSSRVSQGGDRQPLPALCQGFTLFLRA
Sbjct: 508823 ASHRV*RKGGGSGAQ*SSLWSSRVSQGGDRQPLPALCQGFTLFLRA 508686
>emb|AM494959.1| Leishmania braziliensis chromosome 22
Length = 657844
Score = 93.2 bits (230), Expect(3) = 1e-41, Method: Composition-based stats.
Identities = 53/82 (64%), Positives = 54/82 (65%)
Frame = +1
Query: 52 SSAPACVTPXQHCDQQSLLHMEXSGFKCLVEDIXXXXXXXXXXXXXXXDGRMGLHGHLSK 111
SSAPAC TP QHCD+QSLLHME SGFKCLVEDI DGRMGLHGHLSK
Sbjct: 14194 SSAPACATPQQHCDRQSLLHME*SGFKCLVEDILASFLAASPSSFPL*DGRMGLHGHLSK 14373
Query: 112 TRXXXXXXNASHRVURKGGGSG 133
TR N SHRV RKGG G
Sbjct: 14374 TR-IIIIINVSHRV*RKGGQRG 14436
Score = 61.2 bits (147), Expect(3) = 1e-41, Method: Composition-based stats.
Identities = 34/52 (65%), Positives = 36/52 (69%)
Frame = +2
Query: 1 DAETKKCNSEIEUHATLXXXXXXXXXXXXGCYTRATDVFERAUVSLLLGPQS 52
DAETKKCNSEIE HATL GCYTRATDVF +A VSLLLGP +
Sbjct: 14039 DAETKKCNSEIE*HATLRVRSRRRSKPPVGCYTRATDVFGQA*VSLLLGPHN 14194
Score = 61.2 bits (147), Expect(3) = 1e-41, Method: Composition-based stats.
Identities = 32/36 (88%), Positives = 33/36 (91%)
Frame = +2
Query: 130 GGSGAQXSSLWSSRVSQGGDRQPLPALCQGFTLFLR 165
GGSGAQ SSLWSSRVSQGGDRQPL ALCQGF+L LR
Sbjct: 14423 GGSGAQ*SSLWSSRVSQGGDRQPLSALCQGFSLLLR 14530
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.331 0.141 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 463815376
Number of extensions: 5641415
Number of successful extensions: 22117
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 22117
Number of HSP's successfully gapped: 0
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 15 (7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.0 bits)
S2: 78 (34.7 bits)
Query= gi|140256453|ref|NC_009276.1|:subseq(305037,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 6
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
emb|AM494943.1| Leishmania braziliensis chromosome 6 175 5e-42
>emb|AM494943.1| Leishmania braziliensis chromosome 6
Length = 526431
Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats.
Identities = 105/166 (63%), Positives = 105/166 (63%)
Frame = +1
Query: 1 PLPHAULIHHLCFSLSSFAAMQTCRHIAAAAANXPQHTLPVLALDPTFAQRGIXXXXXXX 60
PLPHA LIHHLCFSLSSFAAMQTCRHIAAAAAN PQHTLPVLALDPTFAQRGI
Sbjct: 305038 PLPHA*LIHHLCFSLSSFAAMQTCRHIAAAAAN*PQHTLPVLALDPTFAQRGIAMATIAS 305217
Query: 61 XXXXXXXXXXXXXCMDSELLALESPTRANQRGLKSLDRXXXXXXXXXXXXXXXXXXXXXX 120
CMDSELLALESPTRANQRGLKSLDR
Sbjct: 305218 KAAAVTGAAGLGTCMDSELLALESPTRANQRGLKSLDRSSAATVAAAAAETAKLSTSASA 305397
Query: 121 MESFGETTLTYLGSNDXXXXXXXXXXXXXXXXXFASWAVAAGSKSA 166
MESFGETTLTYLGSND FASWAVAAGSKSA
Sbjct: 305398 MESFGETTLTYLGSNDAAPPALAQALSSRAARQFASWAVAAGSKSA 305535
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.326 0.132 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 336538471
Number of extensions: 3081304
Number of successful extensions: 17286
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 17285
Number of HSP's successfully gapped: 0
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 15 (7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.0 bits)
S2: 78 (34.7 bits)
Query= gi|140256453|ref|NC_009276.1|:subseq(305037,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 6
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
emb|AM494943.1| Leishmania braziliensis chromosome 6 124 1e-26
>emb|AM494943.1| Leishmania braziliensis chromosome 6
Length = 526431
Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats.
Identities = 83/136 (61%), Positives = 83/136 (61%)
Frame = +2
Query: 1 PSPTHDSSTISASHSHPLPLCKRAGXXXXXXXXXXXXXCQCWHSTPPSRSEELPWXXXXX 60
PSPTHDSSTISASHSHPLPLCKRAG CQCWHSTPPSRSEELPW
Sbjct: 305039 PSPTHDSSTISASHSHPLPLCKRAGTLPLLLLTNRSTLCQCWHSTPPSRSEELPWQRSRQ 305218
Query: 61 XXXXXXXXXDXGRAWIRSCLPWSRPRGRISEGSSLSTGAXXXXXXXXXXXXXXXXXXXXX 120
D GRAWIRSCLPWSRPRGRISEGSSLSTGA
Sbjct: 305219 RPPQ*RVPRD*GRAWIRSCLPWSRPRGRISEGSSLSTGALQRRLQLQLRRRRSSAPPRRP 305398
Query: 121 XXXXARLLSPIWGVTT 136
ARLLSPIWGVTT
Sbjct: 305399 WSLLARLLSPIWGVTT 305446
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.321 0.132 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 474039027
Number of extensions: 7165263
Number of successful extensions: 43415
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 43390
Number of HSP's successfully gapped: 0
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 16 (7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 78 (34.7 bits)
Query= gi|140256453|ref|NC_009276.1|:subseq(305037,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 6
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
emb|AM494943.1| Leishmania braziliensis chromosome 6 223 2e-56
emb|AM502224.1| Leishmania infantum chromosome 6 59 6e-07
ref|XM_001463126.1| Leishmania infantum JPCM5 hypothetical prote... 53 4e-05
ref|XM_001680799.1| Leishmania major hypothetical protein, conse... 40 0.27
>emb|AM494943.1| Leishmania braziliensis chromosome 6
Length = 526431
Score = 223 bits (568), Expect = 2e-56, Method: Composition-based stats.
Identities = 131/157 (83%), Positives = 131/157 (83%)
Frame = +3
Query: 10 SLLLTLILCRYANVQAHCRCCCXLTAAHSASAGTRPHLRAARNCHGNDRVKGRRSDGCRG 69
SLLLTLILCRYANVQAHCRCCC LTAAHSASAGTRPHLRAARNCHGNDRVKGRRSDGCRG
Sbjct: 305067 SLLLTLILCRYANVQAHCRCCC*LTAAHSASAGTRPHLRAARNCHGNDRVKGRRSDGCRG 305246
Query: 70 TRDVHGFGVACPGVAHEGESARAQVSRQELXXXXXXXXXXXXEAQHLRVGHGVFWRDYSH 129
TRDVHGFGVACPGVAHEGESARAQVSRQEL EAQHLRVGHGVFWRDYSH
Sbjct: 305247 TRDVHGFGVACPGVAHEGESARAQVSRQELCSDGCSCSCGDGEAQHLRVGHGVFWRDYSH 305426
Query: 130 LSGEXRRSATSXXXXXXXXXXXXVCFLGRRCWEQISG 166
LSGE RRSATS VCFLGRRCWEQISG
Sbjct: 305427 LSGE*RRSATSAGAGIIIEGGAAVCFLGRRCWEQISG 305537
>emb|AM502224.1| Leishmania infantum chromosome 6
Length = 524225
Score = 58.5 bits (140), Expect = 6e-07, Method: Composition-based stats.
Identities = 45/114 (39%), Positives = 54/114 (47%)
Frame = +2
Query: 53 CHGNDRVKGRRSDGCRGTRDVHGFGVACPGVAHEGESARAQVSRQELXXXXXXXXXXXXE 112
CHG+D VKG R GCRG R VH +A GV HEG S A+ Q L
Sbjct: 338228 CHGSDSVKGHRRGGCRGNRVVHEPFIASTGVIHEGTSVAARGC*QRLCSDGT-------- 338383
Query: 113 AQHLRVGHGVFWRDYSHLSGEXRRSATSXXXXXXXXXXXXVCFLGRRCWEQISG 166
+HLRV HG+F R +S LS E RR A+ GRRC +I+
Sbjct: 338384 PRHLRVVHGLFQRIHSKLSEERRRGASDGSTRSIVEGGTATSVGGRRC*PKITA 338545
>ref|XM_001463126.1| Leishmania infantum JPCM5 hypothetical protein (LinJ06.0830)
partial mRNA
Length = 4788
Score = 52.8 bits (125), Expect = 4e-05, Method: Composition-based stats.
Identities = 43/112 (38%), Positives = 52/112 (46%)
Frame = +3
Query: 55 GNDRVKGRRSDGCRGTRDVHGFGVACPGVAHEGESARAQVSRQELXXXXXXXXXXXXEAQ 114
G+D VKG R GCRG R VH +A GV HEG S A+ Q L +
Sbjct: 3 GSDSVKGHRRGGCRGNRVVHEPFIASTGVIHEGTSVAARGC*QRLCSDGT--------PR 158
Query: 115 HLRVGHGVFWRDYSHLSGEXRRSATSXXXXXXXXXXXXVCFLGRRCWEQISG 166
HLRV HG+F R +S LS E RR A+ GRRC +I+
Sbjct: 159 HLRVVHGLFQRIHSKLSEERRRGASDGSTRSIVEGGTATSVGGRRC*PKITA 314
>ref|XM_001680799.1| Leishmania major hypothetical protein, conserved (LmjF06.0800)
partial mRNA
Length = 4755
Score = 40.0 bits (92), Expect = 0.27, Method: Composition-based stats.
Identities = 36/112 (32%), Positives = 45/112 (40%)
Frame = +3
Query: 55 GNDRVKGRRSDGCRGTRDVHGFGVACPGVAHEGESARAQVSRQELXXXXXXXXXXXXEAQ 114
G+D V+ R GCRG R VH + GV HE + A Q+L
Sbjct: 3 GSDSVERHRRGGCRGDRAVHEPPITATGVIHECTAVAACGC*QKLCSVGT--------PL 158
Query: 115 HLRVGHGVFWRDYSHLSGEXRRSATSXXXXXXXXXXXXVCFLGRRCWEQISG 166
H V HG F R++S LS E RR A+ G RCW I+
Sbjct: 159 HCCVVHGFFQRNHSKLSEERRRGASDGGAATIVEGGAAANVAGHRCWAPITA 314
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.332 0.141 5.30e-313
Gapped
Lambda K H
0.267 0.0410 8.74e-311
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 673364304
Number of extensions: 11209087
Number of successful extensions: 94930
Number of sequences better than 10: 4
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 94485
Number of HSP's successfully gapped: 4
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 15 (7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.0 bits)
S2: 78 (34.7 bits)
Query= gi|154331398|ref|NC_009294.1|:subseq(214479,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 1:[revcomp]
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
emb|AM494938.1| Leishmania braziliensis chromosome 1 158 5e-37
>emb|AM494938.1| Leishmania braziliensis chromosome 1
Length = 235333
Score = 158 bits (400), Expect = 5e-37, Method: Composition-based stats.
Identities = 105/166 (63%), Positives = 105/166 (63%)
Frame = -1
Query: 1 VLPDXXXXXXXXXXXXXQHRRLPPXXXXXXXXXXXXXGCIPLSFLFSGAHPRLCVSLPSS 60
VLPD QHRRLPP GCIPLSFLFSGAHPRLCVSLPSS
Sbjct: 20854 VLPDAARRAREDRTASRQHRRLPPTTAATVVLLRALLGCIPLSFLFSGAHPRLCVSLPSS 20675
Query: 61 SSFRMSINPGAAAQALLPFAVLFCCCSSLADFGSRGPSLSXXXXXXXXXXXXXXXXXXXF 120
SSFRMSINPGAAAQALLPFAVLFCCCSSLADFGSRGPSLS F
Sbjct: 20674 SSFRMSINPGAAAQALLPFAVLFCCCSSLADFGSRGPSLSVAGTRAQAVAA*TRALVVVF 20495
Query: 121 ULLYLRPLSCAVFPCISFSHSLCGXXXXXXXXXXXXXXXAPPPKRH 166
LLYLRPLSCAVFPCISFSHSLCG APPPKRH
Sbjct: 20494 *LLYLRPLSCAVFPCISFSHSLCGVLFVLVFSLTLLDVDAPPPKRH 20357
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.329 0.142 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 569133240
Number of extensions: 8834659
Number of successful extensions: 78035
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 77955
Number of HSP's successfully gapped: 0
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 15 (7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.0 bits)
S2: 78 (34.7 bits)
Query= gi|154331398|ref|NC_009294.1|:subseq(214479,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 1:[revcomp]
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
emb|AM494938.1| Leishmania braziliensis chromosome 1 118 6e-25
ref|XM_001561397.1| Leishmania braziliensis MHOM/BR/75/M2904 MCA... 58 9e-07
ref|XM_001462580.1| Leishmania infantum MCAK-like kinesin, putat... 49 6e-04
emb|AM502219.1| Leishmania infantum chromosome 1 47 0.002
ref|XM_001687343.1| Leishmania major strain Friedlin MCAK-like k... 45 0.007
gb|AE001274.2| Leishmania major strain Friedlin chromosome 1, co... 45 0.007
>emb|AM494938.1| Leishmania braziliensis chromosome 1
Length = 235333
Score = 118 bits (296), Expect = 6e-25, Method: Composition-based stats.
Identities = 74/166 (44%), Positives = 74/166 (44%)
Frame = -2
Query: 1 SFLTQLDELEKIAQQVASIDAFHQQLPPXXXXXXXXXXXXXXXXXXPVLTRXXXXXXXXX 60
SFLTQLDELEKIAQQVASIDAFHQQLPP PVLTR
Sbjct: 20853 SFLTQLDELEKIAQQVASIDAFHQQLPPL*SSSALF*AVFLFLFCSPVLTRVCVCLSLPP 20674
Query: 61 XXXXXXXXXXXXHRRFYRSQCCFXXXXXXXXXXXXXXXYRWRAXXXXXXXXXXXXXXXXX 120
HRRFYRSQCCF YRWRA
Sbjct: 20673 PLSVCPSTPVLPHRRFYRSQCCFAAAVPLLTLAVVGPLYRWRALVRRRSPLRLER*LLSF 20494
Query: 121 XXXXXXXXXXXXXXXXXXXTLCVAYCLCSFSLLPSXTXMHPLPSAT 166
TLCVAYCLCSFSLLPS T MHPLPSAT
Sbjct: 20493 DFFIFDLSLARSFRASLSLTLCVAYCLCSFSLLPS*T*MHPLPSAT 20356
>ref|XM_001561397.1| Leishmania braziliensis MHOM/BR/75/M2904 MCAK-like kinesin, putative
(LbrM01_V2.0060) partial mRNA
Length = 1992
Score = 58.2 bits (139), Expect = 9e-07, Method: Composition-based stats.
Identities = 28/28 (100%), Positives = 28/28 (100%)
Frame = +1
Query: 1 SFLTQLDELEKIAQQVASIDAFHQQLPP 28
SFLTQLDELEKIAQQVASIDAFHQQLPP
Sbjct: 1903 SFLTQLDELEKIAQQVASIDAFHQQLPP 1986
>ref|XM_001462580.1| Leishmania infantum MCAK-like kinesin, putative (LinJ01.0030) partial
mRNA
Length = 2022
Score = 48.9 bits (115), Expect = 6e-04, Method: Composition-based stats.
Identities = 24/28 (85%), Positives = 25/28 (89%)
Frame = +1
Query: 1 SFLTQLDELEKIAQQVASIDAFHQQLPP 28
SFLTQLDEL+KIAQQVASI AF Q LPP
Sbjct: 1912 SFLTQLDELDKIAQQVASITAFQQHLPP 1995
>emb|AM502219.1| Leishmania infantum chromosome 1
Length = 274520
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 24/28 (85%), Positives = 25/28 (89%)
Frame = -1
Query: 1 SFLTQLDELEKIAQQVASIDAFHQQLPP 28
SFLTQLDEL+KIAQQVASI AF Q LPP
Sbjct: 9515 SFLTQLDELDKIAQQVASITAFQQHLPP 9432
>ref|XM_001687343.1| Leishmania major strain Friedlin MCAK-like kinesin, putative
(LmjF01.0030) partial mRNA
Length = 2007
Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats.
Identities = 22/28 (78%), Positives = 24/28 (85%)
Frame = +1
Query: 1 SFLTQLDELEKIAQQVASIDAFHQQLPP 28
SFLTQL+EL+KIAQQVA I AF Q LPP
Sbjct: 1918 SFLTQLEELDKIAQQVADITAFQQHLPP 2001
>gb|AE001274.2| Leishmania major strain Friedlin chromosome 1, complete sequence
Length = 268984
Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats.
Identities = 22/28 (78%), Positives = 24/28 (85%)
Frame = -2
Query: 1 SFLTQLDELEKIAQQVASIDAFHQQLPP 28
SFLTQL+EL+KIAQQVA I AF Q LPP
Sbjct: 9150 SFLTQLEELDKIAQQVADITAFQQHLPP 9067
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.344 0.145 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 302572006
Number of extensions: 2120239
Number of successful extensions: 31025
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 31010
Number of HSP's successfully gapped: 0
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 15 (7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (19.2 bits)
S2: 78 (34.7 bits)
Query= gi|154331398|ref|NC_009294.1|:subseq(214479,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 1:[revcomp]
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
emb|AM494938.1| Leishmania braziliensis chromosome 1 167 1e-39
>emb|AM494938.1| Leishmania braziliensis chromosome 1
Length = 235333
Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats.
Identities = 104/147 (70%), Positives = 104/147 (70%)
Frame = -3
Query: 20 TPSTNNCRHCXXXXXXXXXXXXXXXXXXCSPAFVCVSPFLLLFPYVHQPRCCRTGASTVR 79
TPSTNNCRHC CSPAFVCVSPFLLLFPYVHQPRCCRTGASTVR
Sbjct: 20795 TPSTNNCRHCSPPPRSSRLYSSFFSVLRCSPAFVCVSPFLLLFPYVHQPRCCRTGASTVR 20616
Query: 80 SAVLLLQFPCULWQSWALSIGGGHSCAGGRRXXXXXXXXXXXXXXXXXXXXXXXXHLFLS 139
SAVLLLQFPC LWQSWALSIGGGHSCAGGRR HLFLS
Sbjct: 20615 SAVLLLQFPC*LWQSWALSIGGGHSCAGGRRLDSSVSCCLLTSLSSTSLLRGLSVHLFLS 20436
Query: 140 LSVWRTVCARFLSYPLRRRCTPSQAPP 166
LSVWRTVCARFLSYPLRRRCTPSQAPP
Sbjct: 20435 LSVWRTVCARFLSYPLRRRCTPSQAPP 20355
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.330 0.140 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 622721741
Number of extensions: 10886117
Number of successful extensions: 80190
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 80177
Number of HSP's successfully gapped: 0
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 15 (7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.0 bits)
S2: 78 (34.7 bits)
Query= gi|154331545|ref|NC_009295.1|:subseq(130563,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 2:[revcomp]
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
emb|AM494939.1| Leishmania braziliensis chromosome 2 183 1e-44
ref|XM_001561509.1| Leishmania braziliensis MHOM/BR/75/M2904 hyp... 139 3e-31
gb|CP000078.1| Leishmania major strain Friedlin chromosome 2, co... 97 2e-18
ref|XM_817153.1| Leishmania major hypothetical protein, conserve... 95 7e-18
ref|XM_001462698.1| Leishmania infantum JPCM5 hypothetical prote... 94 1e-17
emb|AM502220.1| Leishmania infantum chromosome 2 94 1e-17
gb|AC007862.7| Trypanosoma brucei chromosome 2 clone RPCI93-10C8... 51 1e-04
ref|XM_946462.1| Trypanosoma brucei TREU927 hypothetical protein... 50 2e-04
ref|XM_799112.1| Trypanosoma cruzi strain CL Brener hypothetical... 46 0.003
ref|XM_815958.1| Trypanosoma cruzi strain CL Brener hypothetical... 45 0.008
>emb|AM494939.1| Leishmania braziliensis chromosome 2
Length = 332537
Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats.
Identities = 114/166 (68%), Positives = 114/166 (68%)
Frame = -1
Query: 1 HAAAMKVKGASSSRTTQGSGXXXXXXXXXXXXXXPSSQRTAGLRRATLLKQRRLMLPHXX 60
HAAAMKVKGASSSRTTQGSG PSSQRTAGLRRATLLKQRRLMLPH
Sbjct: 201974 HAAAMKVKGASSSRTTQGSGDAKRKLTKKAKKDTPSSQRTAGLRRATLLKQRRLMLPHMT 201795
Query: 61 XXXXXXXXXXXXLNLFDKVQTVPAYAADPFAAVMQHLSSTMDALQPQTPDVGPAEXXXXX 120
LNLFDKVQTVPAYAADPFAAVMQHLSSTMDALQPQTPDVGPAE
Sbjct: 201794 AAEERMAMAQEELNLFDKVQTVPAYAADPFAAVMQHLSSTMDALQPQTPDVGPAERAVGA 201615
Query: 121 XXXXXXXXXXXXXXXXXXXAPFPEATPSRITSNVVCGWRSRAGIPR 166
APFPEATPSRITSNVVCGWRSRAGIPR
Sbjct: 201614 GRRR*ASVCVCVGSLSSLSAPFPEATPSRITSNVVCGWRSRAGIPR 201477
>ref|XM_001561509.1| Leishmania braziliensis MHOM/BR/75/M2904 hypothetical protein,
conserved (LbrM02_V2.0460) partial mRNA
Length = 594
Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats.
Identities = 87/115 (75%), Positives = 87/115 (75%)
Frame = +1
Query: 1 HAAAMKVKGASSSRTTQGSGXXXXXXXXXXXXXXPSSQRTAGLRRATLLKQRRLMLPHXX 60
HAAAMKVKGASSSRTTQGSG PSSQRTAGLRRATLLKQRRLMLPH
Sbjct: 220 HAAAMKVKGASSSRTTQGSGDAKRKLTKKAKKDTPSSQRTAGLRRATLLKQRRLMLPHMT 399
Query: 61 XXXXXXXXXXXXLNLFDKVQTVPAYAADPFAAVMQHLSSTMDALQPQTPDVGPAE 115
LNLFDKVQTVPAYAADPFAAVMQHLSSTMDALQPQTPDVGPAE
Sbjct: 400 AAEERMAMAQEELNLFDKVQTVPAYAADPFAAVMQHLSSTMDALQPQTPDVGPAE 564
>gb|CP000078.1| Leishmania major strain Friedlin chromosome 2, complete sequence
Length = 355714
Score = 97.1 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 64/114 (56%), Positives = 69/114 (60%)
Frame = -1
Query: 2 AAAMKVKGASSSRTTQGSGXXXXXXXXXXXXXXPSSQRTAGLRRATLLKQRRLMLPHXXX 61
A A+KVK A +R T G PSSQRTA LRRAT+L +RRL LP
Sbjct: 219721 APAVKVKEARGARATSAPGGAKRKLAMNAKKDKPSSQRTAALRRATVLGRRRLTLPRMSA 219542
Query: 62 XXXXXXXXXXXLNLFDKVQTVPAYAADPFAAVMQHLSSTMDALQPQTPDVGPAE 115
L LFD VQ VPAYAADPFAAVMQHLS+TMD LQPQTPDVG AE
Sbjct: 219541 AETRMAVAQAELQLFDAVQAVPAYAADPFAAVMQHLSATMDVLQPQTPDVGMAE 219380
>ref|XM_817153.1| Leishmania major hypothetical protein, conserved (LmjF02.0480)
partial mRNA
Length = 729
Score = 95.1 bits (235), Expect = 7e-18, Method: Composition-based stats.
Identities = 64/114 (56%), Positives = 69/114 (60%)
Frame = +1
Query: 2 AAAMKVKGASSSRTTQGSGXXXXXXXXXXXXXXPSSQRTAGLRRATLLKQRRLMLPHXXX 61
A A+KVK A +R T G PSSQRTA LRRAT+L +RRL LP
Sbjct: 358 APAVKVKEARGARATSAPGGAKRKLAMNAKKDKPSSQRTAALRRATVLGRRRLTLPRMSA 537
Query: 62 XXXXXXXXXXXLNLFDKVQTVPAYAADPFAAVMQHLSSTMDALQPQTPDVGPAE 115
L LFD VQ VPAYAADPFAAVMQHLS+TMD LQPQTPDVG AE
Sbjct: 538 AETRMAVAQAELQLFDAVQAVPAYAADPFAAVMQHLSATMDVLQPQTPDVGMAE 699
>ref|XM_001462698.1| Leishmania infantum JPCM5 hypothetical protein, conserved
(LinJ02.0400) partial mRNA
Length = 606
Score = 94.4 bits (233), Expect = 1e-17, Method: Composition-based stats.
Identities = 62/111 (55%), Positives = 66/111 (59%)
Frame = +1
Query: 2 AAAMKVKGASSSRTTQGSGXXXXXXXXXXXXXXPSSQRTAGLRRATLLKQRRLMLPHXXX 61
A AMKVK A R T PSSQRTA LRRAT+L++RRL LP
Sbjct: 235 APAMKVKEARGVRATAAPVGAKRKHAMNAKKDKPSSQRTAALRRATVLERRRLTLPRMSA 414
Query: 62 XXXXXXXXXXXLNLFDKVQTVPAYAADPFAAVMQHLSSTMDALQPQTPDVG 112
L LFD VQTVPAYA DPFAAVMQHLS+TMD LQPQTPDVG
Sbjct: 415 AETRMTVAQEELQLFDAVQTVPAYAEDPFAAVMQHLSATMDVLQPQTPDVG 567
>emb|AM502220.1| Leishmania infantum chromosome 2
Length = 327119
Score = 94.4 bits (233), Expect = 1e-17, Method: Composition-based stats.
Identities = 62/111 (55%), Positives = 66/111 (59%)
Frame = -1
Query: 2 AAAMKVKGASSSRTTQGSGXXXXXXXXXXXXXXPSSQRTAGLRRATLLKQRRLMLPHXXX 61
A AMKVK A R T PSSQRTA LRRAT+L++RRL LP
Sbjct: 183458 APAMKVKEARGVRATAAPVGAKRKHAMNAKKDKPSSQRTAALRRATVLERRRLTLPRMSA 183279
Query: 62 XXXXXXXXXXXLNLFDKVQTVPAYAADPFAAVMQHLSSTMDALQPQTPDVG 112
L LFD VQTVPAYA DPFAAVMQHLS+TMD LQPQTPDVG
Sbjct: 183278 AETRMTVAQEELQLFDAVQTVPAYAEDPFAAVMQHLSATMDVLQPQTPDVG 183126
>gb|AC007862.7| Trypanosoma brucei chromosome 2 clone RPCI93-10C8, complete sequence
Length = 150671
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/40 (65%), Positives = 32/40 (80%)
Frame = -1
Query: 73 LNLFDKVQTVPAYAADPFAAVMQHLSSTMDALQPQTPDVG 112
L LFD+V +PA+ ADPF A+ +HLS+ MD LQPQTPDVG
Sbjct: 22529 LALFDQVTQMPAFVADPFTAIDEHLSTAMDFLQPQTPDVG 22410
>ref|XM_946462.1| Trypanosoma brucei TREU927 hypothetical protein (Tb927.2.2540)
partial mRNA
Length = 540
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/40 (65%), Positives = 32/40 (80%)
Frame = +1
Query: 73 LNLFDKVQTVPAYAADPFAAVMQHLSSTMDALQPQTPDVG 112
L LFD+V +PA+ ADPF A+ +HLS+ MD LQPQTPDVG
Sbjct: 403 LALFDQVTQMPAFVADPFTAIDEHLSTAMDFLQPQTPDVG 522
>ref|XM_799112.1| Trypanosoma cruzi strain CL Brener hypothetical protein partial
mRNA
Length = 347
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 23/40 (57%), Positives = 30/40 (75%)
Frame = +3
Query: 73 LNLFDKVQTVPAYAADPFAAVMQHLSSTMDALQPQTPDVG 112
L LFD+V +P++ +PFAA+ HL+ TM LQPQTPDVG
Sbjct: 207 LALFDQVMQIPSFEENPFAAIEGHLNGTMAFLQPQTPDVG 326
>ref|XM_815958.1| Trypanosoma cruzi strain CL Brener hypothetical protein partial
mRNA
Length = 645
Score = 45.1 bits (105), Expect = 0.008, Method: Composition-based stats.
Identities = 23/40 (57%), Positives = 30/40 (75%)
Frame = +1
Query: 73 LNLFDKVQTVPAYAADPFAAVMQHLSSTMDALQPQTPDVG 112
L LFD+V +P++ +PFAA+ HL+ TM LQPQTPDVG
Sbjct: 505 LALFDQVMQIPSFEENPFAAIEGHLNGTMAFLQPQTPDVG 624
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.316 0.127 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 317251656
Number of extensions: 2663378
Number of successful extensions: 14568
Number of sequences better than 10: 1
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 14568
Number of HSP's successfully gapped: 1
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 16 (7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 78 (34.7 bits)
Query= gi|154331545|ref|NC_009295.1|:subseq(130563,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 2:[revcomp]
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
emb|AM494939.1| Leishmania braziliensis chromosome 2 159 2e-37
ref|XM_001561509.1| Leishmania braziliensis MHOM/BR/75/M2904 hyp... 84 1e-14
emb|AM502220.1| Leishmania infantum chromosome 2 38 0.91
ref|XM_001462698.1| Leishmania infantum JPCM5 hypothetical prote... 36 3.3
>emb|AM494939.1| Leishmania braziliensis chromosome 2
Length = 332537
Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats.
Identities = 101/166 (60%), Positives = 101/166 (60%)
Frame = -2
Query: 1 MQQLUKURGRVVAAPLRVAVMXXXXXXXXXXXXXXXXXXXXGYGGRRFXSSADSCYXXXX 60
MQQL K RGRVVAAPLRVAVM GYGGRRF SSADSCY
Sbjct: 201973 MQQL*K*RGRVVAAPLRVAVMRSAS*QRKRRRTRRHRSVLRGYGGRRF*SSADSCYRI*P 201794
Query: 61 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCPLRWMHCSHRRRMWALPSALLAQ 120
CPLRWMHCSHRRRMWALPSALLAQ
Sbjct: 201793 PRRSAWRWRRRS*ISSIRCRRCRRTLRTPSLRSCSTCPLRWMHCSHRRRMWALPSALLAQ 201614
Query: 121 AAGAELVCVCVWGLSRLUVLLFLKRRQVEXHRMLCAGGGHGLGYHA 166
AAGAELVCVCVWGLSRL VLLFLKRRQVE HRMLCAGGGHGLGYHA
Sbjct: 201613 AAGAELVCVCVWGLSRL*VLLFLKRRQVE*HRMLCAGGGHGLGYHA 201476
>ref|XM_001561509.1| Leishmania braziliensis MHOM/BR/75/M2904 hypothetical protein,
conserved (LbrM02_V2.0460) partial mRNA
Length = 594
Score = 84.0 bits (206), Expect = 1e-14, Method: Composition-based stats.
Identities = 61/124 (49%), Positives = 61/124 (49%)
Frame = +2
Query: 1 MQQLUKURGRVVAAPLRVAVMXXXXXXXXXXXXXXXXXXXXGYGGRRFXSSADSCYXXXX 60
MQQL K RGRVVAAPLRVAVM GYGGRRF SSADSCY
Sbjct: 221 MQQL*K*RGRVVAAPLRVAVMRSAS*QRKRRRTRRHRSVLRGYGGRRF*SSADSCYRI*P 400
Query: 61 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCPLRWMHCSHRRRMWALPSALLAQ 120
CPLRWMHCSHRRRMWALPSALLAQ
Sbjct: 401 PRRSAWRWRRRS*ISSIRCRRCRRTLRTPSLRSCSTCPLRWMHCSHRRRMWALPSALLAQ 580
Query: 121 AAGA 124
AAGA
Sbjct: 581 AAGA 592
>emb|AM502220.1| Leishmania infantum chromosome 2
Length = 327119
Score = 38.1 bits (87), Expect = 0.91, Method: Composition-based stats.
Identities = 19/29 (65%), Positives = 23/29 (79%)
Frame = -2
Query: 97 CPLRWMHCSHRRRMWALPSALLAQAAGAE 125
CP RWM+C+HRR+M AL ALLA+ AG E
Sbjct: 183172 CPPRWMYCNHRRQMSALQRALLARDAGTE 183086
>ref|XM_001462698.1| Leishmania infantum JPCM5 hypothetical protein, conserved
(LinJ02.0400) partial mRNA
Length = 606
Score = 36.2 bits (82), Expect = 3.3, Method: Composition-based stats.
Identities = 18/27 (66%), Positives = 22/27 (81%)
Frame = +2
Query: 97 CPLRWMHCSHRRRMWALPSALLAQAAG 123
CP RWM+C+HRR+M AL ALLA+ AG
Sbjct: 521 CPPRWMYCNHRRQMSALQRALLARDAG 601
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.342 0.146 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 397841467
Number of extensions: 5554409
Number of successful extensions: 83998
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 83943
Number of HSP's successfully gapped: 0
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 15 (7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (19.6 bits)
S2: 78 (34.7 bits)
Query= gi|154331545|ref|NC_009295.1|:subseq(130563,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 2:[revcomp]
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
emb|AM494939.1| Leishmania braziliensis chromosome 2 146 3e-33
ref|XM_001561509.1| Leishmania braziliensis MHOM/BR/75/M2904 hyp... 110 1e-22
gb|CP000078.1| Leishmania major strain Friedlin chromosome 2, co... 52 5e-05
ref|XM_817153.1| Leishmania major hypothetical protein, conserve... 50 3e-04
emb|AM502220.1| Leishmania infantum chromosome 2 49 5e-04
ref|XM_001462698.1| Leishmania infantum JPCM5 hypothetical prote... 47 0.002
>emb|AM494939.1| Leishmania braziliensis chromosome 2
Length = 332537
Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats.
Identities = 103/149 (69%), Positives = 103/149 (69%)
Frame = -3
Query: 18 XRUCEAQADKESEEGHAVIAAYCGATAGDASKAAPTHVTAYXXXXXXXXXXXXXVESLRX 77
R CEAQADKESEEGHAVIAAYCGATAGDASKAAPTHVTAY VESLR
Sbjct: 201921 *R*CEAQADKESEEGHAVIAAYCGATAGDASKAAPTHVTAYDRRGGAHGDGAGGVESLR* 201742
Query: 78 GADGAGVRCGPLRCGHAAPVLYDGCTAATDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXF 137
GADGAGVRCGPLRCGHAAPVLYDGCTAATD F
Sbjct: 201741 GADGAGVRCGPLRCGHAAPVLYDGCTAATDAGCGPCRARCWRRPPALS*CVCVCGVSLVF 201562
Query: 138 ECSFSUSDAKSNNIECCVRVAVTGWDTTR 166
ECSFS SDAKSNNIECCVRVAVTGWDTTR
Sbjct: 201561 ECSFS*SDAKSNNIECCVRVAVTGWDTTR 201475
>ref|XM_001561509.1| Leishmania braziliensis MHOM/BR/75/M2904 hypothetical protein,
conserved (LbrM02_V2.0460) partial mRNA
Length = 594
Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats.
Identities = 74/90 (82%), Positives = 74/90 (82%)
Frame = +3
Query: 18 XRUCEAQADKESEEGHAVIAAYCGATAGDASKAAPTHVTAYXXXXXXXXXXXXXVESLRX 77
R CEAQADKESEEGHAVIAAYCGATAGDASKAAPTHVTAY VESLR
Sbjct: 273 *R*CEAQADKESEEGHAVIAAYCGATAGDASKAAPTHVTAYDRRGGAHGDGAGGVESLR* 452
Query: 78 GADGAGVRCGPLRCGHAAPVLYDGCTAATD 107
GADGAGVRCGPLRCGHAAPVLYDGCTAATD
Sbjct: 453 GADGAGVRCGPLRCGHAAPVLYDGCTAATD 542
>gb|CP000078.1| Leishmania major strain Friedlin chromosome 2, complete sequence
Length = 355714
Score = 52.4 bits (124), Expect = 5e-05, Method: Composition-based stats.
Identities = 46/86 (53%), Positives = 52/86 (60%)
Frame = -3
Query: 22 EAQADKESEEGHAVIAAYCGATAGDASKAAPTHVTAYXXXXXXXXXXXXXVESLRXGADG 81
EAQA E EEG A IAA+ GA AGD + AAPTH TA ++ GA
Sbjct: 219659 EAQARNEREEGQAFIAAHRGAAAGDGAGAAPTHATANVRCGDAHGGGAGGAAAV*CGASR 219480
Query: 82 AGVRCGPLRCGHAAPVLYDGCTAATD 107
AGVRC PLRCGHAAP+ +DG TAA D
Sbjct: 219479 AGVRCRPLRCGHAAPIRHDGRTAAAD 219402
>ref|XM_817153.1| Leishmania major hypothetical protein, conserved (LmjF02.0480)
partial mRNA
Length = 729
Score = 49.7 bits (117), Expect = 3e-04, Method: Composition-based stats.
Identities = 46/86 (53%), Positives = 52/86 (60%)
Frame = +3
Query: 22 EAQADKESEEGHAVIAAYCGATAGDASKAAPTHVTAYXXXXXXXXXXXXXVESLRXGADG 81
EAQA E EEG A IAA+ GA AGD + AAPTH TA ++ GA
Sbjct: 420 EAQARNEREEGQAFIAAHRGAAAGDGAGAAPTHATANVRCGDAHGGGAGGAAAV*CGASR 599
Query: 82 AGVRCGPLRCGHAAPVLYDGCTAATD 107
AGVRC PLRCGHAAP+ +DG TAA D
Sbjct: 600 AGVRCRPLRCGHAAPIRHDGRTAAAD 677
>emb|AM502220.1| Leishmania infantum chromosome 2
Length = 327119
Score = 48.9 bits (115), Expect = 5e-04, Method: Composition-based stats.
Identities = 46/86 (53%), Positives = 52/86 (60%)
Frame = -3
Query: 22 EAQADKESEEGHAVIAAYCGATAGDASKAAPTHVTAYXXXXXXXXXXXXXVESLRXGADG 81
EAQA E EEG A IAA+ GA AGD + AAPTH TA ++ GA+
Sbjct: 183396 EAQARNEREEGQAFIAAHRGAAAGDGAGAAPTHATADVRCGDAHDGGAGGAAAV*CGANS 183217
Query: 82 AGVRCGPLRCGHAAPVLYDGCTAATD 107
AGVR PLRCGHAAPV +DGC A TD
Sbjct: 183216 AGVR*RPLRCGHAAPVRHDGCIATTD 183139
>ref|XM_001462698.1| Leishmania infantum JPCM5 hypothetical protein, conserved
(LinJ02.0400) partial mRNA
Length = 606
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 46/86 (53%), Positives = 52/86 (60%)
Frame = +3
Query: 22 EAQADKESEEGHAVIAAYCGATAGDASKAAPTHVTAYXXXXXXXXXXXXXVESLRXGADG 81
EAQA E EEG A IAA+ GA AGD + AAPTH TA ++ GA+
Sbjct: 297 EAQARNEREEGQAFIAAHRGAAAGDGAGAAPTHATADVRCGDAHDGGAGGAAAV*CGANS 476
Query: 82 AGVRCGPLRCGHAAPVLYDGCTAATD 107
AGVR PLRCGHAAPV +DGC A TD
Sbjct: 477 AGVR*RPLRCGHAAPVRHDGCIATTD 554
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.328 0.136 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 362012470
Number of extensions: 2856224
Number of successful extensions: 20701
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 20696
Number of HSP's successfully gapped: 0
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 15 (7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.0 bits)
S2: 78 (34.7 bits)
Query= gi|154331742|ref|NC_009296.1|:subseq(131959,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 3:[revcomp]
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
emb|AM494940.1| Leishmania braziliensis chromosome 3 138 7e-31
>emb|AM494940.1| Leishmania braziliensis chromosome 3
Length = 388728
Score = 138 bits (347), Expect = 7e-31, Method: Composition-based stats.
Identities = 88/166 (53%), Positives = 88/166 (53%)
Frame = -2
Query: 1 LTPGEIERTACXXXXXXXXXXXXXXXXXXPIESEPQHGKHEVNLSAVMQRWMXXXXXXXX 60
LTPGEIERTAC PIESEPQHGKHEVNLSAVMQRWM
Sbjct: 256769 LTPGEIERTACVSTSM*GGSSGVVVV*ASPIESEPQHGKHEVNLSAVMQRWMEGEGSGEG 256590
Query: 61 XXXALLTPIGEPHPTXXXXXXXXXXXXXXSYTRGFPLVKVQYAEXXXXXXXXXXXXXXXX 120
ALLTPIGEPHPT SYTRGFPLVKVQYAE
Sbjct: 256589 GGGALLTPIGEPHPTRRPRAPARAPPPP*SYTRGFPLVKVQYAEPLFHPLPPIPPPFSPP 256410
Query: 121 XXXXXXRCTRPVYALLRTQPRGXXXXXXXXXXXXXFVKCPRKRLGA 166
RCTRPVYALLRTQPRG FVKCPRKRLGA
Sbjct: 256409 FLSPLHRCTRPVYALLRTQPRGPPSASPPPSLSFSFVKCPRKRLGA 256272
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.321 0.137 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 331725275
Number of extensions: 2766456
Number of successful extensions: 2550
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 2550
Number of HSP's successfully gapped: 0
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 16 (7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 78 (34.7 bits)
Query= gi|154331742|ref|NC_009296.1|:subseq(131959,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 3:[revcomp]
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
emb|AM494940.1| Leishmania braziliensis chromosome 3 124 9e-27
>emb|AM494940.1| Leishmania braziliensis chromosome 3
Length = 388728
Score = 124 bits (312), Expect = 9e-27, Method: Composition-based stats.
Identities = 81/166 (48%), Positives = 81/166 (48%)
Frame = -3
Query: 1 XHLVKSSGLRAYLQACKXXXXXXXXXXXXXXXXXRSTVSTKXTYQQSCSDGWKGKDRGRE 60
HLVKSSGLRAYLQACK RSTVSTK TYQQSCSDGWKGKDRGRE
Sbjct: 256768 *HLVKSSGLRAYLQACKVAAAVLLLSEQVQ*SLSRSTVSTK*TYQQSCSDGWKGKDRGRE 256589
Query: 61 VGALSSXXXXXXXXXXXXXXXXXXXXXXNHIRGDFHLUKCNMQSLCFTXXXXXXXXXXXX 120
VGALSS NHIRGDFHL KCNMQSLCFT
Sbjct: 256588 VGALSSPL*ANPIPPAVPAPRPEPPPRPNHIRGDFHL*KCNMQSLCFTPFPLSLRPSLLP 256409
Query: 121 XXXXXIAAHAQCMRXXXXXXXXXXXXXXXXXXXXXXXXXXGNVSVR 166
IAAHAQCMR GNVSVR
Sbjct: 256408 FSRHSIAAHAQCMRSSAHSHAALLQPHPPPLSPFPS*SAPGNVSVR 256271
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.335 0.138 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 283461651
Number of extensions: 1983311
Number of successful extensions: 19820
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 19818
Number of HSP's successfully gapped: 0
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 15 (7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (19.6 bits)
S2: 78 (34.7 bits)
Query= gi|154331742|ref|NC_009296.1|:subseq(131959,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 3:[revcomp]
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
emb|AM494940.1| Leishmania braziliensis chromosome 3 112 3e-23
>emb|AM494940.1| Leishmania braziliensis chromosome 3
Length = 388728
Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats.
Identities = 77/166 (46%), Positives = 77/166 (46%)
Frame = -1
Query: 1 NTWUNRADCVRIYKHVRWQQRCCCCLSKSNRVXXXXXXXXSKPISSHAAMDXXXXXXXXX 60
NTW NRADCVRIYKHVRWQQRCCCCLSKSNRV SKPISSHAAMD
Sbjct: 256767 NTW*NRADCVRIYKHVRWQQRCCCCLSKSNRV*AAAR*ARSKPISSHAAMDGRGRIGGGR 256588
Query: 61 XXXXXXXXXXXXXXXXXXXXXXXXXXALIIYAGISTCESAICRXXXXXXXXXXXXXXXXX 120
ALIIYAGISTCESAICR
Sbjct: 256587 WGRSPHPYRRTPSHPPSPRPGQSPPPALIIYAGISTCESAICRASVSPPSPYPSALLSSL 256408
Query: 121 XXXXXXXXXXXVCAPPHTAXXXXXXXXXXXXXXXXXEVPQETSRCA 166
VCAPPHTA EVPQETSRCA
Sbjct: 256407 SLATPSLHTPSVCAPPHTATRPSFSLTPPLSLLFLREVPQETSRCA 256270
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.325 0.130 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 393888608
Number of extensions: 3628940
Number of successful extensions: 60427
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 59844
Number of HSP's successfully gapped: 0
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 15 (7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.0 bits)
S2: 78 (34.7 bits)
Query= gi|154331742|ref|NC_009296.1|:subseq(169349,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 3
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
ref|XM_001561588.1| Leishmania braziliensis MHOM/BR/75/M2904 qui... 102 5e-20
emb|AM494940.1| Leishmania braziliensis chromosome 3 102 5e-20
emb|AM502249.1| Leishmania infantum chromosome 31 74 2e-11
ref|XM_001467505.1| Leishmania infantum JPCM5 quinone oxidoreduc... 67 2e-09
ref|XM_001687299.1| Leishmania major quinone oxidoreductase, put... 58 1e-06
gb|AC125735.1| Leishmania major strain Friedlin chromosome 3, co... 58 1e-06
>ref|XM_001561588.1| Leishmania braziliensis MHOM/BR/75/M2904 quinone oxidoreductase,
putative (LbrM03_V2.0480) partial mRNA
Length = 999
Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats.
Identities = 62/106 (58%), Positives = 62/106 (58%)
Frame = +3
Query: 15 CVGDDAWKARRLLWWCRLHRQLRCLHSGPSLCXXXXXXXXXXXXXXXXXVPRSDGTLPCG 74
CVGDDAWKARRLLWWCRLHRQLRCLHSGPSLC VPRSDGTLPCG
Sbjct: 231 CVGDDAWKARRLLWWCRLHRQLRCLHSGPSLCAARGAGWGN*CAGGGGAVPRSDGTLPCG 410
Query: 75 LQLPVRPRLHXXXXXXXXXXXXXXMPDGEXXXXXXXXXXXXXGEGN 120
LQLPVRPRLH MPDGE GEGN
Sbjct: 411 LQLPVRPRLHGGGARRRWRNGAAGMPDGEAARCARDRHLRRRGEGN 548
>emb|AM494940.1| Leishmania braziliensis chromosome 3
Length = 388728
Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats.
Identities = 62/106 (58%), Positives = 62/106 (58%)
Frame = +3
Query: 15 CVGDDAWKARRLLWWCRLHRQLRCLHSGPSLCXXXXXXXXXXXXXXXXXVPRSDGTLPCG 74
CVGDDAWKARRLLWWCRLHRQLRCLHSGPSLC VPRSDGTLPCG
Sbjct: 169392 CVGDDAWKARRLLWWCRLHRQLRCLHSGPSLCAARGAGWGN*CAGGGGAVPRSDGTLPCG 169571
Query: 75 LQLPVRPRLHXXXXXXXXXXXXXXMPDGEXXXXXXXXXXXXXGEGN 120
LQLPVRPRLH MPDGE GEGN
Sbjct: 169572 LQLPVRPRLHGGGARRRWRNGAAGMPDGEAARCARDRHLRRRGEGN 169709
>emb|AM502249.1| Leishmania infantum chromosome 31
Length = 1744348
Score = 73.6 bits (179), Expect = 2e-11, Method: Composition-based stats.
Identities = 43/89 (48%), Positives = 45/89 (50%)
Frame = -1
Query: 15 CVGDDAWKARRLLWWCRLHRQLRCLHSGPSLCXXXXXXXXXXXXXXXXXVPRSDGTLPCG 74
C GDDA KA RL WWCRLH QLR LHSG S+C VPR DG L G
Sbjct: 1323877 CAGDDARKACRLFWWCRLHWQLRRLHSGASVCAA*SAG*GDGRGGGGSDVPRPDGALSGG 1323698
Query: 75 LQLPVRPRLHXXXXXXXXXXXXXXMPDGE 103
LQLPVRP L +PDGE
Sbjct: 1323697 LQLPVRPGLDGGSARCRRWDGASCVPDGE 1323611
>ref|XM_001467505.1| Leishmania infantum JPCM5 quinone oxidoreductase (LinJ31.2840)
partial mRNA
Length = 582
Score = 66.6 bits (161), Expect = 2e-09, Method: Composition-based stats.
Identities = 43/89 (48%), Positives = 45/89 (50%)
Frame = +3
Query: 15 CVGDDAWKARRLLWWCRLHRQLRCLHSGPSLCXXXXXXXXXXXXXXXXXVPRSDGTLPCG 74
C GDDA KA RL WWCRLH QLR LHSG S+C VPR DG L G
Sbjct: 231 CAGDDARKACRLFWWCRLHWQLRRLHSGASVCAA*SAG*GDGRGGGGSDVPRPDGALSGG 410
Query: 75 LQLPVRPRLHXXXXXXXXXXXXXXMPDGE 103
LQLPVRP L +PDGE
Sbjct: 411 LQLPVRPGLDGGSARCRRWDGASCVPDGE 497
>ref|XM_001687299.1| Leishmania major quinone oxidoreductase, putative (LmjF03.0570)
partial mRNA
Length = 999
Score = 57.8 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 42/104 (40%), Positives = 46/104 (44%)
Frame = +3
Query: 17 GDDAWKARRLLWWCRLHRQLRCLHSGPSLCXXXXXXXXXXXXXXXXXVPRSDGTLPCGLQ 76
GDDA +A RL WC LH QLR LHSG S+C VPR DG L GLQ
Sbjct: 237 GDDAREACRLFRWCWLHWQLRRLHSGASVCAARSAGWGDGRGGGGSDVPRPDGALSGGLQ 416
Query: 77 LPVRPRLHXXXXXXXXXXXXXXMPDGEXXXXXXXXXXXXXGEGN 120
LPVRP L +PDGE GEG+
Sbjct: 417 LPVRPGLDGGGARCRRWDGASCVPDGEAARCARDRRLRRCGEGD 548
>gb|AC125735.1| Leishmania major strain Friedlin chromosome 3, complete sequence
Length = 384518
Score = 57.8 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 42/104 (40%), Positives = 46/104 (44%)
Frame = +3
Query: 17 GDDAWKARRLLWWCRLHRQLRCLHSGPSLCXXXXXXXXXXXXXXXXXVPRSDGTLPCGLQ 76
GDDA +A RL WC LH QLR LHSG S+C VPR DG L GLQ
Sbjct: 215307 GDDAREACRLFRWCWLHWQLRRLHSGASVCAARSAGWGDGRGGGGSDVPRPDGALSGGLQ 215486
Query: 77 LPVRPRLHXXXXXXXXXXXXXXMPDGEXXXXXXXXXXXXXGEGN 120
LPVRP L +PDGE GEG+
Sbjct: 215487 LPVRPGLDGGGARCRRWDGASCVPDGEAARCARDRRLRRCGEGD 215618
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.327 0.146 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 309792379
Number of extensions: 3384200
Number of successful extensions: 28718
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 28714
Number of HSP's successfully gapped: 0
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 15 (7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.0 bits)
S2: 78 (34.7 bits)
Query= gi|154331742|ref|NC_009296.1|:subseq(169349,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 3
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
emb|AM494940.1| Leishmania braziliensis chromosome 3 296 1e-78
ref|XM_001561588.1| Leishmania braziliensis MHOM/BR/75/M2904 qui... 294 6e-78
gb|AC125735.1| Leishmania major strain Friedlin chromosome 3, co... 275 5e-72
ref|XM_001687299.1| Leishmania major quinone oxidoreductase, put... 261 4e-68
emb|AM502249.1| Leishmania infantum chromosome 31 173 4e-60
ref|XM_808729.1| Trypanosoma cruzi strain CL Brener quinone oxid... 199 2e-49
ref|XM_812561.1| Trypanosoma cruzi strain CL Brener quinone oxid... 196 1e-48
ref|XM_001467505.1| Leishmania infantum JPCM5 quinone oxidoreduc... 164 3e-39
gb|CP000088.1| Thermobifida fusca YX, complete genome 124 1e-26
emb|AM420293.1| Saccharopolyspora erythraea NRRL2338 complete ge... 121 7e-26
gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, co... 121 8e-26
gb|CP001074.1| Rhizobium etli CIAT 652, complete genome 120 1e-25
gb|CP000686.1| Roseiflexus sp. RS-1, complete genome 120 2e-25
gb|CP000547.1| Burkholderia mallei NCTC 10247 chromosome II, com... 119 3e-25
gb|CP000573.1| Burkholderia pseudomallei 1106a chromosome II, co... 119 3e-25
gb|CP000571.1| Burkholderia pseudomallei 668 chromosome II, comp... 119 3e-25
gb|CP000545.1| Burkholderia mallei NCTC 10229 chromosome II, com... 119 3e-25
gb|CP000525.1| Burkholderia mallei SAVP1 chromosome II, complete... 119 3e-25
gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, co... 119 3e-25
gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, comp... 119 3e-25
emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromos... 119 3e-25
gb|CP001052.1| Burkholderia phytofirmans PsJN chromosome 1, comp... 118 5e-25
gb|CP000474.1| Arthrobacter aurescens TC1, complete genome 117 1e-24
gb|CP000473.1| Solibacter usitatus Ellin6076, complete genome 117 1e-24
gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, compl... 116 2e-24
emb|AM236080.1| Rhizobium leguminosarum bv. viciae chromosome co... 116 2e-24
gb|CP000089.1| Dechloromonas aromatica RCB, complete genome 115 3e-24
gb|CP001025.1| Burkholderia ambifaria MC40-6 chromosome 1, compl... 115 3e-24
gb|CP001191.1| Rhizobium leguminosarum bv. trifolii WSM2304, com... 115 4e-24
gb|CP001096.1| Rhodopseudomonas palustris TIE-1, complete genome 115 5e-24
emb|BX572601.1| Rhodopseudomonas palustris CGA009 complete genom... 115 5e-24
emb|AM746676.1| Sorangium cellulosum 'So ce 56' complete genome 115 5e-24
gb|U87282.1|RCU87282 Rhodobacter capsulatus cbbII operon: phosph... 115 5e-24
emb|AM920436.1| Penicillium chrysogenum Wisconsin 54-1255 comple... 115 6e-24
ref|XM_001398875.1| Aspergillus niger CBS 513.88 hypothetical pr... 114 1e-23
gb|CP000440.1| Burkholderia ambifaria AMMD chromosome 1, complet... 114 1e-23
gb|CP001032.1| Opitutus terrae PB90-1, complete genome 114 1e-23
gb|CP001364.1| Chloroflexus sp. Y-400-fl, complete genome 114 1e-23
gb|CP000909.1| Chloroflexus aurantiacus J-10-fl, complete genome 114 1e-23
gb|EU686621.1| Uncultured bacterium KM3-187-G1 genomic sequence 113 2e-23
gb|CP000352.1| Ralstonia metallidurans CH34, complete genome 113 2e-23
gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence 113 2e-23
gb|CP001298.1| Methylobacterium chloromethanicum CM4, complete g... 113 2e-23
gb|CP000908.1| Methylobacterium extorquens PA1, complete genome 113 2e-23
emb|AM270408.1| Aspergillus niger contig An18c0160, complete genome 113 3e-23
gb|CP000386.1| Rubrobacter xylanophilus DSM 9941, complete genome 112 5e-23
ref|XM_748413.1| Aspergillus fumigatus Af293 quinone oxidoreduct... 111 6e-23
gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 111 6e-23
gb|CP000781.1| Xanthobacter autotrophicus Py2, complete genome 111 7e-23
gb|CP001029.1| Methylobacterium populi BJ001, complete genome 111 8e-23
gb|CP000390.1| Mesorhizobium sp. BNC1, complete genome 111 8e-23
ref|XM_001239524.1| Coccidioides immitis RS hypothetical protein... 111 9e-23
gb|CP000458.1| Burkholderia cenocepacia HI2424 chromosome 1, com... 110 1e-22
gb|CP000378.1| Burkholderia cenocepacia AU 1054 chromosome 1, co... 110 1e-22
gb|EU795230.1| Uncultured bacterium AD248-D7-1A genomic sequence 110 1e-22
gb|CP001349.1| Methylobacterium nodulans ORS 2060, complete genome 110 2e-22
emb|CU633749.1| Cupriavidus taiwanensis str. LMG19424 chromosome... 110 2e-22
gb|AE006469.1| Sinorhizobium meliloti 1021 plasmid pSymA, comple... 110 2e-22
gb|CP000759.1| Ochrobactrum anthropi ATCC 49188 chromosome 2, co... 110 2e-22
gb|CP000738.1| Sinorhizobium medicae WSM419, complete genome 110 2e-22
gb|CP000614.1| Burkholderia vietnamiensis G4 chromosome 1, compl... 110 2e-22
gb|CP001001.1| Methylobacterium radiotolerans JCM 2831, complete... 110 2e-22
gb|CP000958.1| Burkholderia cenocepacia MC0-3 chromosome 1, comp... 109 2e-22
emb|AM711867.1| Clavibacter michiganensis subsp. michiganensis N... 109 3e-22
dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 109 3e-22
gb|CP001068.1| Ralstonia pickettii 12J chromosome 1, complete se... 109 3e-22
ref|XM_001259549.1| Neosartorya fischeri NRRL 181 quinone oxidor... 109 3e-22
gb|CP000133.1| Rhizobium etli CFN 42, complete genome 109 3e-22
dbj|AP009385.1| Burkholderia multivorans ATCC 17616 DNA, complet... 109 3e-22
gb|CP000868.1| Burkholderia multivorans ATCC 17616 chromosome 1,... 109 3e-22
gb|EU686586.1| Uncultured bacterium AD106-G4 genomic sequence 109 4e-22
gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome 108 4e-22
ref|XM_002144924.1| Penicillium marneffei ATCC 18224 quinone oxi... 108 4e-22
emb|AM747720.1| Burkholderia cenocepacia J2315 chromosome 1, com... 108 4e-22
gb|CP000804.1| Roseiflexus castenholzii DSM 13941, complete genome 108 5e-22
ref|XM_001822056.1| Aspergillus oryzae RIB40 hypothetical protei... 108 6e-22
gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome 108 6e-22
gb|CP000394.1| Granulibacter bethesdensis CGDNIH1, complete genome 108 6e-22
emb|CU367582.1| Aphanomyces euteiches cDNA 108 7e-22
gb|CP000769.1| Anaeromyxobacter sp. Fw109-5, complete genome 108 8e-22
emb|AM260479.1| Ralstonia eutropha H16 chromosome 1 108 8e-22
gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 107 9e-22
gb|CP000873.1| Brucella canis ATCC 23365 chromosome II, complete... 107 1e-21
gb|CP000764.1| Bacillus cereus subsp. cytotoxis NVH 391-98, comp... 107 1e-21
gb|EU686608.1| Uncultured bacterium KM3-205-D9 genomic sequence 107 1e-21
gb|CP000943.1| Methylobacterium sp. 4-46, complete genome 107 1e-21
gb|CP001341.1| Arthrobacter chlorophenolicus A6, complete genome 107 1e-21
gb|CP000628.1| Agrobacterium radiobacter K84 chromosome 1, compl... 107 1e-21
gb|CP000454.1| Arthrobacter sp. FB24, complete genome 107 2e-21
gb|CP001196.1| Oligotropha carboxidovorans OM5 strain OM5, compl... 107 2e-21
emb|AL591688.1| Sinorhizobium meliloti 1021 complete chromosome 107 2e-21
dbj|AP007159.1| Aspergillus oryzae RIB40 genomic DNA, SC026 107 2e-21
gb|EF643459.1| Uncultured bacterium clone CLBB-65 genomic sequence 107 2e-21
gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, com... 107 2e-21
emb|AM406670.1| Azoarcus sp. BH72, complete genome 106 2e-21
gb|CP000912.1| Brucella suis ATCC 23445 chromosome II, complete ... 106 2e-21
gb|CP001124.1| Geobacter bemidjiensis Bem, complete genome 106 2e-21
gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete ... 106 2e-21
gb|AE014292.2| Brucella suis 1330 chromosome II, complete sequence 106 2e-21
emb|CR555306.1| Azoarcus sp. EbN1 complete genome 106 3e-21
dbj|AP009384.1| Azorhizobium caulinodans ORS 571 DNA, complete g... 105 3e-21
gb|CP000453.1| Alkalilimnicola ehrlichei MLHE-1, complete genome 105 3e-21
gb|CP000613.1| Rhodospirillum centenum SW, complete genome 105 4e-21
ref|XM_001211305.1| Aspergillus terreus NIH2624 hypothetical pro... 105 4e-21
gb|EU686638.1| Uncultured bacterium KM3-47-B8 genomic sequence 105 4e-21
gb|EU686603.1| Uncultured bacterium AD55-D2 genomic sequence 105 4e-21
dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 105 5e-21
gb|CP000527.1| Desulfovibrio vulgaris subsp. vulgaris DP4, compl... 105 5e-21
ref|XM_652670.1| Aspergillus nidulans FGSC A4 hypothetical prote... 105 6e-21
ref|XM_001274439.1| Aspergillus clavatus NRRL 1 quinone oxidored... 105 6e-21
gb|CP001043.1| Burkholderia phymatum STM815 chromosome 1, comple... 104 8e-21
emb|CU914168.1| Ralstonia solanacearum strain IPO1609 Genome Draft 104 8e-21
gb|CP001195.1| Rhizobium leguminosarum bv. trifolii WSM2304 plas... 104 8e-21
gb|AE008918.1| Brucella melitensis 16M chromosome II, complete s... 104 9e-21
gb|CP000888.1| Brucella abortus S19 chromosome 2, complete sequence 104 9e-21
gb|AE017224.1| Brucella abortus biovar 1 str. 9-941 chromosome I... 104 9e-21
emb|AM040265.1| Brucella melitensis biovar Abortus 2308 chromoso... 104 9e-21
emb|AM849034.1| Clavibacter michiganensis subsp. sepedonicus com... 104 9e-21
emb|CU695239.1| Ralstonia solanacearum strain MolK2 Genome Draft 104 9e-21
gb|EU686629.1| Uncultured bacterium KM3-173-A5 genomic sequence 104 1e-20
gb|CP000449.1| Maricaulis maris MCS10, complete genome 104 1e-20
emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromos... 104 1e-20
gb|CP000949.1| Pseudomonas putida W619, complete genome 104 1e-20
gb|CP001339.1| Thioalkalivibrio sp. HL-EbGR7, complete genome 103 1e-20
gb|CP001016.1| Beijerinckia indica subsp. indica ATCC 9039, comp... 103 1e-20
gb|CP000570.1| Burkholderia pseudomallei 668 chromosome I, compl... 103 1e-20
gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, com... 103 2e-20
gb|CP000548.1| Burkholderia mallei NCTC 10247 chromosome I, comp... 103 2e-20
gb|CP000572.1| Burkholderia pseudomallei 1106a chromosome I, com... 103 2e-20
gb|CP000546.1| Burkholderia mallei NCTC 10229 chromosome I, comp... 103 2e-20
gb|CP000526.1| Burkholderia mallei SAVP1 chromosome I, complete ... 103 2e-20
gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, comp... 103 2e-20
gb|CP000774.1| Parvibaculum lavamentivorans DS-1, complete genome 103 2e-20
gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome 103 2e-20
dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ... 103 2e-20
gb|CP000850.1| Salinispora arenicola CNS-205, complete genome 103 3e-20
emb|CU234118.1| Bradyrhizobium sp. ORS278,complete sequence 102 3e-20
gb|CP000926.1| Pseudomonas putida GB-1, complete genome 102 3e-20
gb|CP000494.1| Bradyrhizobium sp. BTAi1, complete genome 102 3e-20
ref|XM_001906460.1| Podospora anserina DSM 980 hypothetical prot... 102 4e-20
gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome 102 4e-20
emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome comple... 102 5e-20
gb|CP000578.1| Rhodobacter sphaeroides ATCC 17029 chromosome 2, ... 102 5e-20
gb|CP001151.1| Rhodobacter sphaeroides KD131 chromosome 2, compl... 102 5e-20
gb|CP000749.1| Marinomonas sp. MWYL1, complete genome 102 5e-20
ref|XM_002326495.1| Populus trichocarpa predicted protein, mRNA 102 6e-20
gb|CP000463.1| Rhodopseudomonas palustris BisA53, complete genome 101 8e-20
gb|CP000685.1| Flavobacterium johnsoniae UW101, complete genome 100 1e-19
gb|CP000740.1| Sinorhizobium medicae WSM419 plasmid pSMED02, com... 100 1e-19
emb|AM999887.1| Wolbachia endosymbiont of Culex quinquefasciatus... 100 1e-19
gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome 100 1e-19
ref|XM_001543765.1| Ajellomyces capsulatus NAm1 predicted protei... 100 1e-19
gb|CP000084.1| Candidatus Pelagibacter ubique HTCC1062, complete... 100 1e-19
gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complet... 100 1e-19
gb|CP000480.1| Mycobacterium smegmatis str. MC2 155, complete ge... 100 2e-19
gb|CP000712.1| Pseudomonas putida F1, complete genome 100 2e-19
gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hilde... 100 2e-19
gb|CP001197.1| Desulfovibrio vulgaris str. 'Miyazaki F', complet... 100 2e-19
emb|AJ937762.1| Uncultured gamma proteobacterium fosmid clone b1... 100 2e-19
gb|CP001013.1| Leptothrix cholodnii SP-6, complete genome 100 2e-19
emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,comp... 100 2e-19
gb|EZ028240.1| TSA: Acropora millepora SeqIndex5006, mRNA sequence 92 2e-19
gb|CP001337.1| Chloroflexus aggregans DSM 9485, complete genome 100 2e-19
emb|CU633897.1| Podospora anserina genomic DNA chromosome 1, sup... 100 2e-19
gb|AE015451.1| Pseudomonas putida KT2440 complete genome 100 2e-19
gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 100 3e-19
dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 100 3e-19
emb|AM167904.1| Bordetella avium 197N complete genome 100 3e-19
emb|AM286415.1| Yersinia enterocolitica subsp. enterocolitica 80... 99 3e-19
gb|CP000438.1| Pseudomonas aeruginosa UCBPP-PA14, complete genome 99 3e-19
gb|CP000304.1| Pseudomonas stutzeri A1501, complete genome 99 3e-19
gb|AE004091.2| Pseudomonas aeruginosa PAO1, complete genome 99 3e-19
emb|X85015.1|PAHEMFGEN Pseudomonas aeruginosa qor, hemF and aroE... 99 3e-19
gb|CP000662.1| Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA0... 99 4e-19
gb|CP001186.1| Bacillus cereus G9842, complete genome 99 4e-19
dbj|AP010918.1| Mycobacterium bovis BCG str. Tokyo 172 DNA, comp... 99 4e-19
gb|CP000717.1| Mycobacterium tuberculosis F11, complete genome 99 4e-19
gb|CP000611.1| Mycobacterium tuberculosis H37Ra, complete genome 99 4e-19
emb|AM408590.1| Mycobacterium bovis BCG Pasteur 1173P2, complete... 99 4e-19
gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome 99 4e-19
emb|BX842576.1| Mycobacterium tuberculosis H37Rv complete genome... 99 4e-19
emb|BX248339.1| Mycobacterium bovis subsp. bovis AF2122/97 compl... 99 4e-19
gb|CP000144.1| Rhodobacter sphaeroides 2.4.1 chromosome 2, compl... 99 4e-19
gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000, comp... 99 4e-19
dbj|AK063662.1| Oryza sativa Japonica Group cDNA clone:001-119-C... 99 4e-19
ref|XM_001817662.1| Aspergillus oryzae RIB40 hypothetical protei... 99 4e-19
gb|CP001022.1| Exiguobacterium sibiricum 255-15, complete genome 99 4e-19
emb|BX830690.1|CNS0A0QY Arabidopsis thaliana Full-length cDNA Co... 99 5e-19
emb|FM209186.1| Pseudomonas aeruginosa LESB58 complete genome se... 99 5e-19
dbj|AP009493.1| Streptomyces griseus subsp. griseus NBRC 13350 D... 99 5e-19
dbj|AP007151.1| Aspergillus oryzae RIB40 genomic DNA, SC005 99 6e-19
gb|AE016877.1| Bacillus cereus ATCC 14579, complete genome 99 6e-19
ref|XM_002328713.1| Populus trichocarpa predicted protein, mRNA 99 7e-19
gb|AY087625.1| Arabidopsis thaliana clone 37197 mRNA, complete s... 98 7e-19
gb|FJ372981.1| Gossypium hirsutum Ted2 mRNA, complete cds 98 7e-19
ref|NM_125544.3| Arabidopsis thaliana NADP-dependent oxidoreduct... 98 7e-19
emb|BX832833.1|CNS0A0KZ Arabidopsis thaliana Full-length cDNA Co... 98 8e-19
emb|BX829585.1|CNS0A17R Arabidopsis thaliana Full-length cDNA Co... 98 8e-19
emb|CU633750.1| Cupriavidus taiwanensis str. LMG19424 chromosome... 98 8e-19
gb|BT029771.1| Arabidopsis thaliana At5g61510 mRNA, complete cds 98 8e-19
gb|CP001176.1| Bacillus cereus B4264, complete genome 98 8e-19
gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, comp... 98 9e-19
gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 98 9e-19
gb|AE017221.1| Thermus thermophilus HB27, complete genome 98 9e-19
gb|AE017196.1| Wolbachia endosymbiont of Drosophila melanogaster... 98 1e-18
gb|CP000903.1| Bacillus weihenstephanensis KBAB4, complete genome 98 1e-18
gb|CP000094.1| Pseudomonas fluorescens Pf0-1, complete genome 98 1e-18
dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete g... 98 1e-18
gb|CP000744.1| Pseudomonas aeruginosa PA7, complete genome 97 1e-18
gb|CP000910.1| Renibacterium salmoninarum ATCC 33209, complete g... 97 1e-18
emb|CU207211.1| Herminiimonas arsenicoxydans chromosome, complet... 97 1e-18
gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 97 2e-18
gb|AE017194.1| Bacillus cereus ATCC 10987, complete genome 97 2e-18
gb|CP000750.2| Kineococcus radiotolerans SRS30216, complete genome 97 2e-18
gb|AY658836.1| Synthetic construct Peudomonas aeruginosa clone F... 97 2e-18
gb|CP001131.1| Anaeromyxobacter sp. K, complete genome 97 2e-18
gb|AC115682.2| Dictyostelium discoideum chromosome 2 map 4101105... 97 2e-18
ref|XM_640352.2| Dictyostelium discoideum AX4 putative quinone o... 97 3e-18
gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence 96 3e-18
gb|CP000783.1| Enterobacter sakazakii ATCC BAA-894, complete genome 96 3e-18
emb|CU458896.1| Mycobacterium abscessus chromosome, complete seq... 96 3e-18
gb|CP000459.1| Burkholderia cenocepacia HI2424 chromosome 2, com... 96 3e-18
gb|CP000379.1| Burkholderia cenocepacia AU 1054 chromosome 2, co... 96 3e-18
gb|BT004198.1| Arabidopsis thaliana clone RAFL15-28-A20 (R20893)... 96 3e-18
gb|CP001177.1| Bacillus cereus AH187, complete genome 96 4e-18
gb|CP000479.1| Mycobacterium avium 104, complete genome 96 4e-18
gb|CP001359.1| Anaeromyxobacter dehalogenans 2CP-1, complete genome 96 4e-18
gb|CP000927.1| Caulobacter sp. K31, complete genome 96 4e-18
gb|CP001280.1| Methylocella silvestris BL2, complete genome 96 4e-18
emb|Y08624.1|VUTED2 V.unguiculata mRNA for Ted2 protein 96 4e-18
emb|AM747721.1| Burkholderia cenocepacia J2315 chromosome 2, com... 96 4e-18
gb|CP000720.1| Yersinia pseudotuberculosis IP 31758, complete ge... 96 4e-18
gb|CP000668.1| Yersinia pestis Pestoides F, complete genome 96 4e-18
emb|AL590842.1| Yersinia pestis CO92 complete genome 96 4e-18
gb|AE017042.1| Yersinia pestis biovar Microtus str. 91001, compl... 96 4e-18
gb|DQ771921.1| Synthetic construct Yersinia pestis clone FLH0137... 96 4e-18
gb|CP000308.1| Yersinia pestis Antiqua, complete genome 96 4e-18
gb|CP000305.1| Yersinia pestis Nepal516, complete genome 96 4e-18
gb|AE009952.1| Yersinia pestis KIM, complete genome 96 4e-18
ref|XM_002313809.1| Populus trichocarpa predicted protein, mRNA 96 4e-18
gb|CP000959.1| Burkholderia cenocepacia MC0-3 chromosome 2, comp... 96 5e-18
gb|CP000518.1| Mycobacterium sp. KMS, complete genome 96 5e-18
gb|CP000384.1| Mycobacterium sp. MCS, complete genome 96 5e-18
gb|CP000269.1| Janthinobacterium sp. Marseille, complete genome 96 5e-18
emb|BX830697.1|CNS0A0OC Arabidopsis thaliana Full-length cDNA Co... 96 6e-18
gb|CP000264.1| Jannaschia sp. CCS1, complete genome 96 6e-18
gb|CP001048.1| Yersinia pseudotuberculosis PB1/+, complete genome 95 6e-18
emb|BX936398.1| Yersinia pseudotuberculosis IP32953 genome, comp... 95 6e-18
gb|CP000950.1| Yersinia pseudotuberculosis YPIII, complete genome 95 6e-18
emb|AM260480.1| Ralstonia eutropha H16 chromosome 2 95 6e-18
gb|CP000512.1| Acidovorax avenae subsp. citrulli AAC00-1, comple... 95 7e-18
gb|CP000747.1| Phenylobacterium zucineum HLK1, complete genome 95 7e-18
gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete... 95 7e-18
ref|XM_001590537.1| Sclerotinia sclerotiorum 1980 hypothetical p... 95 9e-18
emb|CR925677.1| Ehrlichia ruminantium str. Gardel, complete genome 95 9e-18
gb|CP000901.1| Yersinia pestis Angola, complete genome 94 1e-17
gb|CP001189.1| Gluconacetobacter diazotrophicus PAl 5, complete ... 94 1e-17
emb|AM889285.1| Gluconacetobacter diazotrophicus PAl 5 complete ... 94 1e-17
gb|CP000227.1| Bacillus cereus Q1, complete genome 94 1e-17
emb|CR925678.1| Ehrlichia ruminantium str. Welgevonden, complete... 94 1e-17
emb|CR767821.1| Ehrlichia ruminantium strain Welgevonden, comple... 94 1e-17
gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome 94 1e-17
gb|CP000964.1| Klebsiella pneumoniae 342, complete genome 94 1e-17
emb|BX640442.1| Bordetella bronchiseptica strain RB50, complete ... 94 1e-17
emb|BX640430.1| Bordetella parapertussis strain 12822, complete ... 94 1e-17
emb|BX640417.1| Bordetella pertussis strain Tohama I, complete g... 94 1e-17
gb|CP000441.1| Burkholderia ambifaria AMMD chromosome 2, complet... 94 1e-17
dbj|AK061143.1| Oryza sativa Japonica Group cDNA clone:006-208-C... 94 2e-17
gb|AE017321.1| Wolbachia endosymbiont strain TRS of Brugia malay... 94 2e-17
ref|NM_001055190.1| Oryza sativa (japonica cultivar-group) Os03g... 94 2e-17
dbj|AK069374.1| Oryza sativa Japonica Group cDNA clone:J023012O1... 94 2e-17
gb|CP000647.1| Klebsiella pneumoniae subsp. pneumoniae MGH 78578... 94 2e-17
ref|XM_001829316.1| Coprinopsis cinerea okayama7#130 hypothetica... 94 2e-17
dbj|AK248287.1| Hordeum vulgare subsp. vulgare cDNA clone: FLbaf... 94 2e-17
gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete ... 94 2e-17
emb|AM933172.1| Salmonella enterica subsp. enterica serovar Ente... 94 2e-17
emb|AM933173.1| Salmonella enterica subsp. enterica serovar Gall... 94 2e-17
emb|AM920435.1| Penicillium chrysogenum Wisconsin 54-1255 comple... 93 2e-17
gb|CP000970.1| Escherichia coli SMS-3-5, complete genome 93 2e-17
gb|CP000854.1| Mycobacterium marinum M, complete genome 93 2e-17
emb|AL627282.1| Salmonella enterica serovar Typhi (Salmonella ty... 93 2e-17
gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi... 93 2e-17
gb|CP001138.1| Salmonella enterica subsp. enterica serovar Agona... 93 3e-17
emb|FM200053.1| Salmonella enterica subsp. enterica serovar Para... 93 3e-17
gb|CP001127.1| Salmonella enterica subsp. enterica serovar Schwa... 93 3e-17
gb|CP001113.1| Salmonella enterica subsp. enterica serovar Newpo... 93 3e-17
gb|CP000886.1| Salmonella enterica subsp. enterica serovar Parat... 93 3e-17
gb|CP000026.1| Salmonella enterica subsp. enterica serovar Parat... 93 3e-17
gb|CP000001.1| Bacillus cereus E33L, complete genome 93 3e-17
gb|AE006468.1| Salmonella enterica subsp. enterica serovar Typhi... 93 3e-17
gb|CP001144.1| Salmonella enterica subsp. enterica serovar Dubli... 93 3e-17
gb|CP000826.1| Serratia proteamaculans 568, complete genome 93 3e-17
gb|CP001120.1| Salmonella enterica subsp. enterica serovar Heide... 93 3e-17
ref|XM_001804220.1| Phaeosphaeria nodorum SN15 hypothetical pro... 93 3e-17
ref|XM_001550208.1| Botryotinia fuckeliana B05.10 hypothetical p... 93 3e-17
gb|CP000880.1| Salmonella enterica subsp. arizonae serovar 62:z4... 93 3e-17
gb|CP000822.1| Citrobacter koseri ATCC BAA-895, complete genome 93 3e-17
gb|CP000580.1| Mycobacterium sp. JLS, complete genome 93 4e-17
gb|CP000857.1| Salmonella enterica subsp. enterica serovar Parat... 92 4e-17
gb|AE017220.1| Salmonella enterica subsp. enterica serovar Chole... 92 4e-17
emb|BX950851.1| Erwinia carotovora subsp. atroseptica SCRI1043, ... 92 4e-17
gb|CP000362.1| Roseobacter denitrificans OCh 114, complete genome 92 4e-17
emb|CU928161.2| Escherichia coli S88 chromosome, complete genome 92 4e-17
gb|CP000468.1| Escherichia coli APEC O1, complete genome 92 4e-17
gb|CP000243.1| Escherichia coli UTI89, complete genome 92 4e-17
gb|AE014075.1| Escherichia coli CFT073, complete genome 92 4e-17
gb|CP001063.1| Shigella boydii CDC 3083-94, complete genome 92 5e-17
gb|CP000555.1| Methylibium petroleiphilum PM1, complete genome 92 5e-17
gb|CP000267.1| Rhodoferax ferrireducens T118, complete genome 92 5e-17
emb|CU928163.2| Escherichia coli UMN026 chromosome, complete genome 92 5e-17
gb|CP000884.1| Delftia acidovorans SPH-1, complete genome 92 5e-17
emb|CU928160.2| Escherichia coli IAI1 chromosome, complete genome 92 6e-17
dbj|AB426062.1| Escherichia coli O111:H- DNA, genomic island GEI... 92 6e-17
gb|CP000038.1| Shigella sonnei Ss046, complete genome 92 6e-17
gb|CP000529.1| Polaromonas naphthalenivorans CJ2, complete genome 92 6e-17
gb|CP001026.1| Burkholderia ambifaria MC40-6 chromosome 2, compl... 92 6e-17
emb|CU928162.2| Escherichia coli ED1a chromosome, complete genome 92 7e-17
dbj|AP009240.1| Escherichia coli SE11 DNA, complete genome 92 7e-17
gb|CP001164.1| Escherichia coli O157:H7 str. EC4115, complete ge... 92 7e-17
gb|CP000800.1| Escherichia coli E24377A, complete genome 92 7e-17
gb|CP000802.1| Escherichia coli HS, complete genome 92 7e-17
gb|CP000247.1| Escherichia coli 536, complete genome 92 7e-17
dbj|BA000007.2| Escherichia coli O157:H7 str. Sakai DNA, complet... 92 7e-17
gb|AE005174.2| Escherichia coli O157:H7 EDL933, complete genome 92 7e-17
gb|CP000036.1| Shigella boydii Sb227, complete genome 92 7e-17
gb|CP000431.1| Rhodococcus jostii RHA1, complete genome 92 8e-17
emb|AM902716.1| Bordetella petrii strain DSM 12804, complete genome 92 8e-17
emb|BX571873.1| Photorhabdus luminescens subsp. laumondii TTO1 c... 92 8e-17
gb|CP000680.1| Pseudomonas mendocina ymp, complete genome 91 8e-17
ref|XM_002174586.1| Schizosaccharomyces japonicus yFS275 quinone... 91 9e-17
gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete ge... 91 1e-16
emb|Z49776.1|ATP4ZETCR A.thaliana mRNA for ARP protein 91 1e-16
emb|FM180568.1| Escherichia coli 0127:H6 E2348/69 complete genom... 91 1e-16
gb|CP000948.1| Escherichia coli str. K12 substr. DH10B, complete... 91 1e-16
dbj|AP009048.1| Escherichia coli str. K12 substr. W3110 DNA, com... 91 1e-16
gb|U00096.2| Escherichia coli str. K-12 substr. MG1655, complete... 91 1e-16
gb|U00006.1|ECOUW89 E. coli chromosomal region from 89.2 to 92.8... 91 1e-16
gb|L02312.1|ECODNABA Escherichia coli helicase (dnaB) gene, 5' e... 91 1e-16
gb|CP000236.1| Ehrlichia chaffeensis str. Arkansas, complete genome 91 1e-16
gb|CP000107.1| Ehrlichia canis str. Jake, complete genome 91 1e-16
dbj|AK249011.1| Hordeum vulgare subsp. vulgare cDNA clone: FLbaf... 91 1e-16
ref|NM_103855.4| Arabidopsis thaliana ARP protein (REF) (AT1G496... 91 1e-16
gb|CP000316.1| Polaromonas sp. JS666, complete genome 91 1e-16
gb|BT008393.1| Arabidopsis thaliana At1g49670 gene, complete cds 91 1e-16
gb|AY093342.1| Arabidopsis thaliana ARP protein (At1g49670) mRNA... 91 1e-16
gb|AY072306.1| Arabidopsis thaliana ARP protein (At1g49670; F14J... 91 1e-16
gb|AY062728.1| Arabidopsis thaliana ARP protein (At1g49670; F14J... 91 1e-16
gb|CP000946.1| Escherichia coli ATCC 8739, complete genome 91 1e-16
gb|CP000034.1| Shigella dysenteriae Sd197, complete genome 91 1e-16
emb|CU928145.2| Escherichia coli 55989 chromosome, complete genome 91 2e-16
emb|CU468135.1| Erwinia tasmaniensis strain ET1/99 complete chro... 91 2e-16
emb|CU928164.2| Escherichia coli IAI39 chromosome, complete genome 90 2e-16
gb|CP001340.1| Caulobacter crescentus NA1000, complete genome 90 2e-16
gb|AE005673.1| Caulobacter crescentus CB15, complete genome 90 2e-16
gb|CP000615.1| Burkholderia vietnamiensis G4 chromosome 2, compl... 90 2e-16
gb|CP001392.1| Diaphorobacter sp. TPSY, complete genome 90 2e-16
gb|CP000539.1| Acidovorax sp. JS42, complete genome 90 2e-16
gb|CP000266.1| Shigella flexneri 5 str. 8401, complete genome 90 3e-16
gb|AE005674.1| Shigella flexneri 2a str. 301, complete genome 90 3e-16
gb|AE014073.1| Shigella flexneri 2a str. 2457T, complete genome 90 3e-16
ref|NM_001023321.1| Schizosaccharomyces pombe quinone oxidoreduc... 90 3e-16
dbj|AP009044.1| Corynebacterium glutamicum R DNA, complete genome 90 3e-16
gb|CP000655.1| Polynucleobacter necessarius subsp. asymbioticus ... 90 3e-16
gb|CP000653.1| Enterobacter sp. 638, complete genome 90 3e-16
ref|XM_754122.1| Ustilago maydis 521 hypothetical protein (UM030... 89 3e-16
gb|CP000557.1| Geobacillus thermodenitrificans NG80-2, complete ... 89 3e-16
dbj|D30800.1|ZINTED2A Zinnia elegans mRNA for TED2, complete cds 89 3e-16
gb|EF037810.1| Synthetic construct Bacillus anthracis clone FLH2... 89 3e-16
emb|CU329672.1| Schizosaccharomyces pombe chromosome III 89 4e-16
gb|CP000544.1| Halorhodospira halophila SL1, complete genome 89 4e-16
gb|CP000709.1| Brucella ovis ATCC 25840 chromosome II, complete ... 64 4e-16
emb|CU928158.2| Escherichia fergusonii ATCC 35469 chromosome, co... 89 4e-16
gb|BT071447.1| Picea sitchensis clone WS02913_F13 unknown mRNA 89 5e-16
ref|NM_001069918.1| Oryza sativa (japonica cultivar-group) Os09g... 89 5e-16
dbj|AK100324.1| Oryza sativa Japonica Group cDNA clone:J023079I0... 89 5e-16
dbj|AK060764.1| Oryza sativa Japonica Group cDNA clone:001-033-A... 89 5e-16
ref|XM_001761098.1| Physcomitrella patens subsp. patens predicte... 89 5e-16
ref|XM_001761195.1| Physcomitrella patens subsp. patens predicte... 89 6e-16
gb|AE017334.2| Bacillus anthracis str. 'Ames Ancestor', complete... 89 6e-16
gb|AE017225.1| Bacillus anthracis str. Sterne, complete genome 89 6e-16
gb|AE016879.1| Bacillus anthracis str. Ames, complete genome 89 6e-16
ref|NM_001071915.1| Oryza sativa (japonica cultivar-group) Os10g... 89 6e-16
dbj|AK110882.1| Oryza sativa Japonica Group cDNA clone:002-172-G... 89 6e-16
ref|XM_385866.1| Gibberella zeae PH-1 hypothetical protein parti... 88 8e-16
gb|EF087719.1| Picea sitchensis clone WS02738_A18 unknown mRNA 88 8e-16
gb|CP000030.1| Anaplasma marginale str. St. Maries, complete genome 88 9e-16
gb|CP001079.1| Anaplasma marginale str. Florida, complete genome 88 9e-16
ref|XM_001939182.1| Pyrenophora tritici-repentis Pt-1C-BFP quino... 88 1e-15
gb|EF082722.1| Picea sitchensis clone WS0293_K11 unknown mRNA 88 1e-15
gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, compl... 88 1e-15
ref|XM_002147480.1| Penicillium marneffei ATCC 18224 quinone oxi... 88 1e-15
gb|CP000511.1| Mycobacterium vanbaalenii PYR-1, complete genome 87 1e-15
gb|CP000629.1| Agrobacterium radiobacter K84 chromosome 2, compl... 87 1e-15
gb|CP000542.1| Verminephrobacter eiseniae EF01-2, complete genome 87 1e-15
gb|EU965489.1| Zea mays clone 286392 mRNA sequence 87 1e-15
gb|AE017355.1| Bacillus thuringiensis serovar konkukian str. 97-... 87 2e-15
gb|DQ244825.1| Zea mays clone 11028 mRNA sequence 87 2e-15
dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete g... 87 2e-15
dbj|BA000036.3| Corynebacterium glutamicum ATCC 13032 DNA, compl... 87 2e-15
emb|BX927152.1| Corynebacterium glutamicum ATCC 13032, IS finger... 87 2e-15
gb|CP001283.1| Bacillus cereus AH820, complete genome 87 2e-15
gb|CP000325.1| Mycobacterium ulcerans Agy99, complete genome 87 2e-15
dbj|AB027757.1| Cicer arietinum mRNA for NADPH oxidoreductase ho... 86 4e-15
dbj|AP008981.1| Orientia tsutsugamushi str. Ikeda DNA, complete ... 86 5e-15
emb|AM746336.1| Streptomyces collinus kirromycin biosynthesis ge... 86 5e-15
dbj|AK070246.1| Oryza sativa Japonica Group cDNA clone:J023044M1... 86 5e-15
gb|CP001045.1| Burkholderia phymatum STM815 plasmid pBPHY01, com... 86 6e-15
dbj|BA000043.1| Geobacillus kaustophilus HTA426 DNA, complete ge... 86 6e-15
dbj|AK115264.1| Ciona intestinalis cDNA, clone:cieg041p16, full ... 85 6e-15
dbj|AB016260.1| Agrobacterium tumefaciens plasmid pTi-SAKURA DNA... 85 7e-15
gb|AE016815.4| Ashbya gossypii (= Eremothecium gossypii) ATCC 10... 85 8e-15
ref|NM_208210.1| Ashbya gossypii ATCC 10895 hypothetical protein... 85 9e-15
gb|CP000485.1| Bacillus thuringiensis str. Al Hakam, complete ge... 85 9e-15
gb|CP000677.1| Novosphingobium aromaticivorans DSM 12444 plasmid... 84 2e-14
dbj|AB196962.1| Burkholderia sp. WS caa67 and caa43 genes for 2-... 84 2e-14
gb|BT071068.1| Picea sitchensis clone WS02769_P04 unknown mRNA 84 2e-14
gb|CP000697.1| Acidiphilium cryptum JF-5, complete genome 84 2e-14
gb|AY557866.1| Saccharomyces cerevisiae clone FLH000787.01X YBR0... 84 2e-14
emb|AM494475.1| Orientia tsutsugamushi Boryong complete genome 83 2e-14
ref|XM_001728591.1| Malassezia globosa CBS 7966 hypothetical pro... 83 2e-14
emb|Z35915.1|SCYBR046C S.cerevisiae chromosome II reading frame ... 83 2e-14
dbj|AP009152.1| Kocuria rhizophila DC2201 DNA, complete genome 83 3e-14
dbj|AB372264.1| Capsicum chinense mRNA for putative NADPH oxidor... 83 3e-14
ref|XM_370071.2| Magnaporthe grisea 70-15 hypothetical protein (... 83 4e-14
gb|CP000758.1| Ochrobactrum anthropi ATCC 49188 chromosome 1, co... 83 4e-14
dbj|AK060364.1| Oryza sativa Japonica Group cDNA clone:001-008-H... 82 5e-14
gb|CP000113.1| Myxococcus xanthus DK 1622, complete genome 82 6e-14
gb|BT017011.1| Zea mays clone EK07D2310H07.c mRNA sequence 82 7e-14
gb|DQ384298.1| Jakoba libera NADPH:quinone reductase-like protei... 82 8e-14
gb|CP000699.1| Sphingomonas wittichii RW1, complete genome 81 1e-13
gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome 81 1e-13
emb|AM942759.1| Proteus mirabilis strain HI4320, complete genome 81 1e-13
emb|AM270327.1| Aspergillus niger contig An14c0200, complete genome 81 1e-13
dbj|AK102736.1| Oryza sativa Japonica Group cDNA clone:J033106C1... 81 1e-13
ref|XM_001401304.1| Aspergillus niger CBS 513.88 hypothetical pr... 81 1e-13
gb|AE007872.2| Agrobacterium tumefaciens str. C58 plasmid At, co... 80 2e-13
gb|CP000500.1| Pichia stipitis CBS 6054 chromosome 6, complete s... 80 2e-13
gb|CP000235.1| Anaplasma phagocytophilum HZ, complete genome 80 2e-13
dbj|BA000030.3| Streptomyces avermitilis MA-4680 DNA, complete g... 80 2e-13
gb|CP001069.1| Ralstonia pickettii 12J chromosome 2, complete se... 80 2e-13
ref|XM_447229.1| Candida glabrata CBS138, CAGL0H09944g partial mRNA 80 3e-13
gb|CP000656.1| Mycobacterium gilvum PYR-GCK, complete genome 80 3e-13
emb|CR380954.1| Candida glabrata strain CBS138 chromosome H comp... 80 3e-13
gb|CP001103.1| Alteromonas macleodii 'Deep ecotype', complete ge... 79 4e-13
ref|XM_002178442.1| Phaeodactylum tricornutum CCAP 1055/1 predic... 79 4e-13
emb|AM270372.1| Aspergillus niger contig An16c0200, complete genome 79 5e-13
ref|XM_001223215.1| Chaetomium globosum CBS 148.51 hypothetical ... 79 5e-13
ref|XM_002288217.1| Thalassiosira pseudonana CCMP1335 predicted ... 79 6e-13
ref|XM_952427.2| Neurospora crassa OR74A hypothetical protein NC... 79 6e-13
ref|XM_001385599.1| Pichia stipitis CBS 6054 NADPH:quinone reduc... 79 6e-13
gb|CP000633.1| Agrobacterium vitis S4 chromosome 1, complete seq... 79 6e-13
gb|AF425990.1| Streptomyces coelicolor A3(2) putative oxidoreduc... 79 6e-13
emb|AL939119.1|SCO939119 Streptomyces coelicolor A3(2) complete ... 79 6e-13
emb|BX908808.1| Neurospora crassa DNA linkage group IV Cosmid co... 78 9e-13
gb|CP000514.1| Marinobacter aquaeolei VT8, complete genome 78 1e-12
ref|XM_002108630.1| Trichoplax adhaerens hypothetical protein, mRNA 78 1e-12
ref|NM_146090.5| Mus musculus zinc binding alcohol dehydrogenase... 77 2e-12
gb|BC116428.1| Mus musculus zinc binding alcohol dehydrogenase, ... 77 2e-12
gb|BC116427.1| Mus musculus zinc binding alcohol dehydrogenase, ... 77 2e-12
dbj|AK081988.1| Mus musculus 16 days embryo head cDNA, RIKEN ful... 77 2e-12
emb|AM920427.1| Penicillium chrysogenum Wisconsin 54-1255 comple... 77 2e-12
ref|XM_001397891.1| Aspergillus niger CBS 513.88 hypothetical pr... 77 2e-12
dbj|AK083082.1| Mus musculus 12 days embryo spinal cord cDNA, RI... 77 2e-12
dbj|AK047559.1| Mus musculus 10 days neonate cerebellum cDNA, RI... 77 2e-12
emb|CR382121.1| Kluyveromyces lactis strain NRRL Y-1140 chromoso... 77 3e-12
gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome 76 3e-12
ref|XM_451462.1| Kluyveromyces lactis NRRL Y-1140, KLLA0A10549g ... 76 3e-12
ref|XM_001373927.1| PREDICTED: Monodelphis domestica similar to ... 76 4e-12
gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete... 76 4e-12
gb|CP000117.1| Anabaena variabilis ATCC 29413, complete genome 75 6e-12
ref|XM_001819025.1| Aspergillus oryzae RIB40 hypothetical protei... 75 7e-12
gb|EU686628.2| Uncultured marine group III euryarchaeote AD1000-... 75 8e-12
gb|BC114032.1| Bos taurus zinc binding alcohol dehydrogenase dom... 75 8e-12
dbj|AP007154.1| Aspergillus oryzae RIB40 genomic DNA, SC001 75 1e-11
gb|CP000393.1| Trichodesmium erythraeum IMS101, complete genome 75 1e-11
gb|BC071035.1| Xenopus laevis hypothetical protein LOC432094, mR... 75 1e-11
gb|CP001287.1| Cyanothece sp. PCC 8801, complete genome 74 1e-11
gb|BC081219.1| Xenopus laevis MGC85240 protein, mRNA (cDNA clone... 74 1e-11
gb|AC124012.4| Mus musculus BAC clone RP24-357P22 from chromosom... 74 1e-11
gb|CP000377.1| Silicibacter sp. TM1040, complete genome 74 1e-11
ref|NM_001106129.1| Rattus norvegicus zinc binding alcohol dehyd... 74 1e-11
ref|XM_002195119.1| PREDICTED: Taeniopygia guttata similar to zi... 74 2e-11
ref|XM_002124412.1| PREDICTED: Ciona intestinalis similar to MGC... 74 2e-11
ref|XM_001418070.1| Ostreococcus lucimarinus CCE9901 predicted p... 74 2e-11
gb|CP000585.1| Ostreococcus lucimarinus CCE9901 chromosome 5, co... 74 2e-11
gb|BC100202.1| Xenopus laevis hypothetical protein LOC432094, mR... 74 2e-11
emb|AL591985.1| Sinorhizobium meliloti 1021 plasmid pSymB 74 2e-11
gb|CP000100.1| Synechococcus elongatus PCC 7942, complete genome 73 3e-11
gb|CP001193.1| Rhizobium leguminosarum bv. trifolii WSM2304 plas... 73 4e-11
gb|CP000830.1| Dinoroseobacter shibae DFL 12, complete genome 72 4e-11
dbj|AK252347.1| Hordeum vulgare subsp. vulgare cDNA clone: FLbaf... 72 4e-11
gb|CP000158.1| Hyphomonas neptunium ATCC 15444, complete genome 72 4e-11
ref|XM_001626914.1| Nematostella vectensis predicted protein (NE... 72 4e-11
gb|CP000237.1| Neorickettsia sennetsu strain Miyayama, complete ... 72 4e-11
gb|CP000272.1| Burkholderia xenovorans LB400 chromosome 3, compl... 72 5e-11
dbj|BA000004.3| Bacillus halodurans C-125 DNA, complete genome 72 5e-11
ref|XM_001791476.1| Phaeosphaeria nodorum SN15 hypothetical pro... 72 5e-11
emb|CR382138.2| Debaryomyces hansenii strain CBS767 chromosome F... 72 5e-11
ref|XM_461387.1| Debaryomyces hansenii CBS767 hypothetical prote... 72 5e-11
ref|XM_709759.1| Candida albicans SC5314 hypothetical protein (Z... 72 6e-11
>emb|AM494940.1| Leishmania braziliensis chromosome 3
Length = 388728
Score = 296 bits (759), Expect = 1e-78, Method: Composition-based stats.
Identities = 166/166 (100%), Positives = 166/166 (100%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA
Sbjct: 169351 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 169530
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM
Sbjct: 169531 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 169710
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATFAC 166
LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATFAC
Sbjct: 169711 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATFAC 169848
>ref|XM_001561588.1| Leishmania braziliensis MHOM/BR/75/M2904 quinone oxidoreductase,
putative (LbrM03_V2.0480) partial mRNA
Length = 999
Score = 294 bits (753), Expect = 6e-78, Method: Composition-based stats.
Identities = 166/166 (100%), Positives = 166/166 (100%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA
Sbjct: 190 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 369
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM
Sbjct: 370 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 549
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATFAC 166
LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATFAC
Sbjct: 550 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATFAC 687
>gb|AC125735.1| Leishmania major strain Friedlin chromosome 3, complete sequence
Length = 384518
Score = 275 bits (702), Expect = 5e-72, Method: Composition-based stats.
Identities = 151/165 (91%), Positives = 155/165 (93%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
GEEGAG VVKVG GV ETMLGKRVAYFGG GCTGSYAAFTV ASAL EVPDGVTDA+AA
Sbjct: 215260 GEEGAGAVVKVGAGVPETMLGKRVAYFGGAGCTGSYAAFTVAPASALREVPDGVTDAEAA 215439
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
AV+CQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIG+CGGAEKA
Sbjct: 215440 AVMCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGVCGGAEKAT 215619
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATFA 165
LA SVGRADVVIDYVATPDW PLVRAAAP+GVDAVYDGVGQATFA
Sbjct: 215620 LARSVGRADVVIDYVATPDWAPLVRAAAPQGVDAVYDGVGQATFA 215754
>ref|XM_001687299.1| Leishmania major quinone oxidoreductase, putative (LmjF03.0570)
partial mRNA
Length = 999
Score = 261 bits (668), Expect = 4e-68, Method: Composition-based stats.
Identities = 151/165 (91%), Positives = 155/165 (93%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
GEEGAG VVKVG GV ETMLGKRVAYFGG GCTGSYAAFTV ASAL EVPDGVTDA+AA
Sbjct: 190 GEEGAGAVVKVGAGVPETMLGKRVAYFGGAGCTGSYAAFTVAPASALREVPDGVTDAEAA 369
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
AV+CQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIG+CGGAEKA
Sbjct: 370 AVMCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGVCGGAEKAT 549
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATFA 165
LA SVGRADVVIDYVATPDW PLVRAAAP+GVDAVYDGVGQATFA
Sbjct: 550 LARSVGRADVVIDYVATPDWAPLVRAAAPQGVDAVYDGVGQATFA 684
>emb|AM502249.1| Leishmania infantum chromosome 31
Length = 1744348
Score = 173 bits (439), Expect(2) = 4e-60, Method: Composition-based stats.
Identities = 99/111 (89%), Positives = 101/111 (90%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
GEEGAG VVKVG GV ETMLGKRVAYFGG GCTGSYAAFTV ASAL EVPD VTDA+AA
Sbjct: 1323918 GEEGAGAVVKVGAGVPETMLGKRVAYFGGAGCTGSYAAFTVAPASALREVPDEVTDAEAA 1323739
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIG 111
AV+CQGLTAHYLVDSSYPCGPGSTV VHAAAGGTGLLVCQMAKLRGARVI
Sbjct: 1323738 AVMCQGLTAHYLVDSSYPCGPGSTVAVHAAAGGTGLLVCQMAKLRGARVIA 1323586
Score = 83.2 bits (204), Expect(2) = 4e-60, Method: Composition-based stats.
Identities = 43/54 (79%), Positives = 46/54 (85%)
Frame = -1
Query: 112 ICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATFA 165
+C A KA L+ S GRADVVIDYV TPDW PLVRAAAP+GVDAVYDGVGQATFA
Sbjct: 1323586 VCARARKATLSRSSGRADVVIDYVGTPDWAPLVRAAAPQGVDAVYDGVGQATFA 1323425
>ref|XM_808729.1| Trypanosoma cruzi strain CL Brener quinone oxidoreductase partial
mRNA
Length = 1005
Score = 199 bits (506), Expect = 2e-49, Method: Composition-based stats.
Identities = 108/164 (65%), Positives = 124/164 (75%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
GEEG GTVVK G V +G+RVAYFG V TGSYA + VV+ + VPDGV D AA
Sbjct: 193 GEEGVGTVVKKGANVVSPNIGQRVAYFGNV--TGSYATYCVVKMANANLVPDGVEDKAAA 366
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A+LCQGLTAHYL SYPCGP S V+VHAAAGGTGLLVCQMAKLRGA V+G+CGG +KA
Sbjct: 367 ALLCQGLTAHYLTHDSYPCGPESRVLVHAAAGGTGLLVCQMAKLRGAFVVGVCGGEKKAE 546
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
LA +VG AD V+DY+A+PDW VR P G DAVYDGVG++TF
Sbjct: 547 LARTVGHADHVVDYLASPDWTLEVRRLVPGGFDAVYDGVGKSTF 678
>ref|XM_812561.1| Trypanosoma cruzi strain CL Brener quinone oxidoreductase partial
mRNA
Length = 1005
Score = 196 bits (499), Expect = 1e-48, Method: Composition-based stats.
Identities = 106/164 (64%), Positives = 124/164 (75%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
GEEG GTVVK G V +G+RVAYFG V TGSYA + VV+ + +PDGV D AA
Sbjct: 193 GEEGVGTVVKKGVNVVSPNIGQRVAYFGNV--TGSYATYCVVKMANANVLPDGVDDKAAA 366
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A+LCQGLTAHYL SYPCGP S V+VHAAAGGTGLLVCQMAKLRGA V+G+CGG +KA
Sbjct: 367 ALLCQGLTAHYLTHDSYPCGPQSRVLVHAAAGGTGLLVCQMAKLRGAFVVGVCGGEKKAE 546
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
LA +VG AD V+DY+A+PDW +R P G DAVYDGVG++TF
Sbjct: 547 LARTVGHADHVVDYLASPDWTLEMRGLVPGGFDAVYDGVGKSTF 678
>ref|XM_001467505.1| Leishmania infantum JPCM5 quinone oxidoreductase (LinJ31.2840)
partial mRNA
Length = 582
Score = 164 bits (414), Expect(2) = 3e-39, Method: Composition-based stats.
Identities = 99/111 (89%), Positives = 101/111 (90%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
GEEGAG VVKVG GV ETMLGKRVAYFGG GCTGSYAAFTV ASAL EVPD VTDA+AA
Sbjct: 190 GEEGAGAVVKVGAGVPETMLGKRVAYFGGAGCTGSYAAFTVAPASALREVPDEVTDAEAA 369
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIG 111
AV+CQGLTAHYLVDSSYPCGPGSTV VHAAAGGTGLLVCQMAKLRGARVI
Sbjct: 370 AVMCQGLTAHYLVDSSYPCGPGSTVAVHAAAGGTGLLVCQMAKLRGARVIA 522
Score = 23.5 bits (49), Expect(2) = 3e-39, Method: Composition-based stats.
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +3
Query: 112 ICGGAEKAMLATSVGRADVV 131
+C A KA L+ S GRADVV
Sbjct: 522 VCARARKATLSRSSGRADVV 581
>gb|CP000088.1| Thermobifida fusca YX, complete genome
Length = 3642249
Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats.
Identities = 89/164 (54%), Positives = 99/164 (60%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G EGAG V VG GV+E +G RVA V GSYA V A L+ VPD VT QAA
Sbjct: 2625702 GSEGAGVVSAVGEGVTEVSVGDRVA---SVALRGSYAERAVAAAKDLVPVPDEVTLDQAA 2625532
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
AVL QGLTAHYL S+YP G TV+VHAAAGGTG L+ Q+AK RGARVIG K
Sbjct: 2625531 AVLLQGLTAHYLTHSTYPIQQGDTVLVHAAAGGTGQLIVQLAKRRGARVIGTVSTEAKER 2625352
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
A +VG AD VI Y + R +GV VYDGVG ATF
Sbjct: 2625351 QARAVG-ADEVIRYTEQDVTTEVRRLTGGEGVPVVYDGVGAATF 2625223
Score = 67.0 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 60/164 (36%), Positives = 83/164 (50%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E G VV +G GV+ G RV V GS+A + + S + P ++D +AA
Sbjct: 404689 GVELCGEVVALGEGVTTVTEGDRVIG-SPVLPYGSFAEYAPMDISRVFPAPPSLSDTEAA 404865
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A+ T + + G TV+VHAAAGG G Q+AK GARVIG+ GGA KA
Sbjct: 404866 ALFIGYQTGWFALHRRAGLQAGETVLVHAAAGGVGSAAVQLAKAAGARVIGVVGGAAKAE 405045
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
A +G AD+V+D + A +G D +YD VG ++
Sbjct: 405046 YARKLG-ADIVVDRYVDDFVSVVKEATDGRGADVIYDPVGGESY 405174
Score = 48.9 bits (115), Expect = 5e-04, Method: Composition-based stats.
Identities = 50/161 (31%), Positives = 69/161 (42%), Gaps = 1/161 (0%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVA-YFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQA 59
G E +G ++ GPG ++ G RV + G YA V LL VP GV +A
Sbjct: 91830 GLECSGRIIAFGPGTEDS--GYRVGDEVCALLSGGGYAERVAVPVGQLLPVPKGVGLVEA 91657
Query: 60 AAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKA 119
AA+ T V + G ++VH A G G Q A+ GARV+ G K
Sbjct: 91656 AALPEVACTVWANVFMTAQLREGEALLVHGGASGIGTFAIQAARAFGARVLTTAGSEAKL 91477
Query: 120 MLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
+G ADV I+Y + + +GVD V D +G
Sbjct: 91476 ARCRELG-ADVAINYRSEDFAARVREETGGRGVDVVLDIMG 91357
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 42/106 (39%), Positives = 49/106 (46%), Gaps = 5/106 (4%)
Frame = -2
Query: 66 GLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGA-RVIGICGGAEKAMLATS 124
GLTA+ + G TV V AAG G +V Q+A L GA RVIG G EK
Sbjct: 2200043 GLTAYVGLRHKAGIREGDTVFVSGAAGAVGSMVGQLAALYGARRVIGSAGSPEKVAYLRD 2199864
Query: 125 VGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG----QATFAC 166
D DY A P L AAP G+D +D VG +A AC
Sbjct: 2199863 ELGFDAAFDYRAAPVREQLAD-AAPDGIDVYFDNVGGDHLEAAIAC 2199729
Score = 41.2 bits (95), Expect = 0.12, Method: Composition-based stats.
Identities = 36/132 (27%), Positives = 58/132 (43%)
Frame = +3
Query: 34 GSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGG 93
G++A V L+ P ++ +AA + LTA+ ++ + PG +V+V A GG
Sbjct: 1482162 GTFAEKVAVPRRNLVPKPRSLSFEEAACLPTAWLTAYRMLFTQAELKPGDSVLVQGAGGG 1482341
Query: 94 TGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVD 153
+ + + G RV A K A +G D + P R P VD
Sbjct: 1482342 VATALIALGRAAGLRVFATSRDAAKRERARELGAHDT---------FAPGER--LPVRVD 1482488
Query: 154 AVYDGVGQATFA 165
AV + VG+AT++
Sbjct: 1482489 AVMETVGRATWS 1482524
Score = 40.4 bits (93), Expect = 0.21, Method: Composition-based stats.
Identities = 45/131 (34%), Positives = 64/131 (48%), Gaps = 2/131 (1%)
Frame = -2
Query: 34 GSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGG 93
++A TVV ASA + +P + +AA + C LT V ++ PG +V V GG
Sbjct: 2074250 AAFAQETVVPASACVAIPADIPPTEAALLGCAVLTGVGAVRNAAQVRPGQSVAV-IGLGG 2074074
Query: 94 TGLLVCQMAKLRG-ARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAP-KG 151
GL Q A+L G A VI + EK LA S+G + + D +RA A +G
Sbjct: 2074073 VGLAAVQGARLAGAAMVIAVDPVEEKEELARSLGATHFL---TPSDDLSRRIRALADGRG 2073903
Query: 152 VDAVYDGVGQA 162
VD + VG+A
Sbjct: 2073902 VDHAIECVGRA 2073870
Score = 35.8 bits (81), Expect = 5.1, Method: Composition-based stats.
Identities = 41/134 (30%), Positives = 62/134 (46%), Gaps = 2/134 (1%)
Frame = +2
Query: 29 GVGCTGSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVH 88
G+G G+ A + +V S L G+ +AA + GLT+++ V S+ P P +
Sbjct: 1720148 GLGADGALADYLLVPHSRHLVPLRGLDPVRAAPLTDAGLTSYHAVRSALPRLPPDGTALL 1720327
Query: 89 AAAGGTGLLVCQMAK-LRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAA 147
GG G L Q+ + L A++I + A+K LA G AD + +T P VR
Sbjct: 1720328 IGIGGLGHLAVQILRALSSAQIIAVDMAADKRELALRCG-ADTALP--STDTVPDQVRDL 1720498
Query: 148 APK-GVDAVYDGVG 160
G D V+D V
Sbjct: 1720499 TEGVGADVVFDFVA 1720540
>emb|AM420293.1| Saccharopolyspora erythraea NRRL2338 complete genome
Length = 8212805
Score = 121 bits (304), Expect = 7e-26, Method: Composition-based stats.
Identities = 80/164 (48%), Positives = 97/164 (59%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G EGAGTV +VGP V+ +G RVA+ G YA V+ A L+ VPDGV D AA
Sbjct: 2351836 GSEGAGTVAEVGPEVTGFAVGDRVAW---AMVPGGYAERAVIPADKLVRVPDGVDDRTAA 2351666
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A L QG+TAHYLV S+YP G + +VHAAAGG GLL+ Q+ K RG VIG EK
Sbjct: 2351665 AALLQGMTAHYLVTSTYPVKTGDSALVHAAAGGMGLLLTQLVKARGGNVIGTVSTPEKEK 2351486
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
LA G AD +I Y + +GVD VYDGVG++TF
Sbjct: 2351485 LAREAG-ADEIIRYTEADVAEEVRDLTDGRGVDVVYDGVGKSTF 2351357
Score = 72.8 bits (177), Expect = 4e-11, Method: Composition-based stats.
Identities = 68/167 (40%), Positives = 87/167 (52%), Gaps = 1/167 (0%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G AG V+ G GV+ GKRV V G YA LL VPDG+ +AA
Sbjct: 4088373 GNAIAGRVMATGGGVAPAWRGKRVVT-ETVDDNGGYAEQAPAAVEDLLSVPDGLGLPEAA 4088197
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A+L G TA L D++ G V+V AAAGG G L+ Q+A+ GARVIG G K
Sbjct: 4088196 ALLHDGSTALGLFDNA-GIRAGEWVLVEAAAGGLGSLLVQLARAAGARVIGAARGERKLD 4088020
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGV-DAVYDGVGQATFAC 166
+ +G A+VV+DY + PDW +R P V D V +G+A F C
Sbjct: 4088019 VVRGLG-AEVVVDY-SEPDWTDRLRDTPPTLVFDGVGGAIGRAAFEC 4087885
Score = 67.4 bits (163), Expect = 1e-09, Method: Composition-based stats.
Identities = 52/130 (40%), Positives = 68/130 (52%), Gaps = 1/130 (0%)
Frame = -2
Query: 36 YAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTG 95
YA V +VPD ++D A A+L QG+TA +L+ +S PG +VVV AAAGG G
Sbjct: 4997557 YAQLAAVWHDLSFDVPDELSDDHALALLLQGVTASHLLRTSARLAPGESVVVQAAAGGVG 4997378
Query: 96 LLVCQMAKLRGA-RVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDA 154
L Q+A+ GA RVI K +A +G AD V+D L +A KGVD
Sbjct: 4997377 SLAVQLARELGAGRVIATASSEHKRRIAAELG-ADEVVDSAPEGLTGRLRQANNGKGVDV 4997201
Query: 155 VYDGVGQATF 164
V + VG F
Sbjct: 4997200 VLEMVGGEVF 4997171
Score = 64.7 bits (156), Expect = 9e-09, Method: Composition-based stats.
Identities = 66/161 (40%), Positives = 84/161 (52%), Gaps = 1/161 (0%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G GAG V+ VG GV +G+ V G +G YA V ++EVPDGV QAA
Sbjct: 5565711 GGGGAGRVLSVGEGVDPAWVGRHVLVRG----SGGYAERVVAGMEEVVEVPDGVDSTQAA 5565878
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A+L G+TA L G V+V AA GG G L+ Q+A+ GARV+ G K
Sbjct: 5565879 AMLHDGVTALKLAREG-KIATGEWVLVAAATGGAGSLLVQLARNAGARVVAAARGERKLA 5566055
Query: 121 LATSVGRADVVIDYVATPDWPPLVR-AAAPKGVDAVYDGVG 160
LA +G A+VV+DY + W VR A GVD +DG G
Sbjct: 5566056 LARELG-AEVVVDY-SEDGWQHRVRDAVGGAGVDLAFDGAG 5566172
Score = 64.3 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 61/164 (37%), Positives = 89/164 (54%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G + G VV VG V+ +G+RVA + TG++A + V+ S ++ VPD + A+A
Sbjct: 7434865 GYDLVGEVVAVGEAVTSCRVGQRVA---AMPRTGAWADYVEVRDSDVVPVPDEIDAAEAV 7435035
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
AV+ G+TA L+ + G TV+VH A GG G L+ Q+ L G RVIG +
Sbjct: 7435036 AVVLNGVTAWQLLHRAARVRSGQTVLVHGAGGGVGALLAQLGALSGVRVIGTASAGRHEV 7435215
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
L +ID+ T D VR AP+GVDAV+D +G+A+
Sbjct: 7435216 LRPLGAE---LIDH-RTEDVAARVRELAPRGVDAVFDPLGEASL 7435335
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 47/122 (38%), Positives = 63/122 (51%), Gaps = 1/122 (0%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRV-AYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQA 59
G EGAG V+ VGPGV++ + G RV F GVG +V + + +PDG + AQA
Sbjct: 2858026 GGEGAGVVLDVGPGVTDIVPGDRVMGLFSGVG------PVSVTDRNLVCRMPDGWSFAQA 2857865
Query: 60 AAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKA 119
AAV LTA++ + PG +V+VHA GG G Q+A GA A+ A
Sbjct: 2857864 AAVPVAYLTAYHGLVDLAALRPGESVLVHAGTGGVGTAALQLAHHLGATAYATASPAKWA 2857685
Query: 120 ML 121
L
Sbjct: 2857684 AL 2857679
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 51/145 (35%), Positives = 71/145 (48%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V ++G V LG+RV G+ G YA V + +L +P+ V A
Sbjct: 5822335 GREVAGVVDEIGADVDPVWLGRRVVTHLGMA-GGGYAELAVREVESLHVLPEDVGFEAAV 5822511
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A++ G T ++ + VVV +AAGG G L+ Q + GA V+G G A K
Sbjct: 5822512 AMIGTGRTTMAILRIAGMTPDDDVVVVTSAAGGIGNLLVQRGRTVGATVVGAAGSAAKVE 5822691
Query: 121 LATSVGRADVVIDYVATPDWPPLVR 145
++G A V +DY TPDW VR
Sbjct: 5822692 KVRALGAA-VAVDY-TTPDWTTAVR 5822760
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 51/138 (36%), Positives = 68/138 (49%), Gaps = 4/138 (2%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRV----AYFGGVGCTGSYAAFTVVQASALLEVPDGVTD 56
G + +G V + G GV+ G V Y GVG S+A + A A P +
Sbjct: 8148833 GWDVSGVVEETGTGVTLFKPGDEVFGMLPYPHGVG---SHAEYVTGPARAFARKPSQLDH 8149003
Query: 57 AQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGA 116
QAAAV LTA + + PG V+VHAAAGG G + Q+AK RGA VIG
Sbjct: 8149004 VQAAAVPLAALTAWQALVDTARVQPGQRVLVHAAAGGVGHMAVQIAKARGAHVIGTASEG 8149183
Query: 117 EKAMLATSVGRADVVIDY 134
+ L ++G AD ++DY
Sbjct: 8149184 KHEFL-RAIG-ADELVDY 8149231
Score = 55.1 bits (131), Expect = 8e-06, Method: Composition-based stats.
Identities = 62/165 (37%), Positives = 90/165 (54%), Gaps = 1/165 (0%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E G VV++GP V +G RV G V G++A V+ AS L P+ ++DA+A+
Sbjct: 6030781 GVELCGEVVELGPDVEGLAVGDRVVG-GAVMPRGAFAEHAVLDASRALPAPETLSDAEAS 6030605
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A+ T + + G T++VHAAAGG G Q+ K GA V+G+ GG EKA
Sbjct: 6030604 ALYIGYQTGWFGLHRRAGLRAGETLLVHAAAGGVGSAAIQLGKAAGATVVGVVGGPEKAQ 6030425
Query: 121 LATSVGRADVVIDYVATPDWPPLVRA-AAPKGVDAVYDGVGQATF 164
+A +G ADVV+D D+ +V+ +G D +YD VG T+
Sbjct: 6030424 VARDLG-ADVVVDR-HQEDFVQVVKELTGGRGADVIYDPVGGETY 6030296
Score = 54.3 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 50/169 (29%), Positives = 75/169 (44%), Gaps = 18/169 (10%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AGTV VG GV+ + +G+RV F GVG G Y + ++ +P ++ A A
Sbjct: 4564130 GSEVAGTVTAVGDGVAASWVGRRVWAFTGVG--GGYVESAIAPVEEVVPLPANISPADAV 4564303
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGI-CGGAEKA 119
+ G+ AH+ + ++ PG +V+V AAG G+ Q+A GA + + AE+
Sbjct: 4564304 TLGNSGVVAHFGLAHAHFV-PGESVLVRGAAGSIGITTVQLAARGGADAVAVTTSSAERG 4564480
Query: 120 MLATSVGRA-----------------DVVIDYVATPDWPPLVRAAAPKG 151
+G DVVID +A D P P G
Sbjct: 4564481 DRLRELGATHVLDRSGDGGEDAPAGYDVVIDIIAGADMPAFFDKLNPNG 4564627
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 58/160 (36%), Positives = 81/160 (50%), Gaps = 1/160 (0%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V++VG GV++ G RV G VG G++A V L +P G + QAA
Sbjct: 3146598 GGEAAGVVLEVGDGVTDLAPGDRV--MGVVGDYGAFATEAVTDRRLLARIPRGWSFEQAA 3146771
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+V LTA+Y + G +V+VHAAAGG G+ Q+A+ GA V G G +
Sbjct: 3146772 SVPVVFLTAYYGLRDLAGLSAGQSVLVHAAAGGVGMAATQLARHWGAEVFGTAGPGKWDA 3146951
Query: 121 LATSVGRADVVIDYVATPDWPPLVRA-AAPKGVDAVYDGV 159
L S+G D I T ++ L R +GVD V + +
Sbjct: 3146952 L-RSLGLTDDHIASSRTAEFGELFRERTGGRGVDVVLNSL 3147068
Score = 53.1 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 59/165 (35%), Positives = 80/165 (48%), Gaps = 5/165 (3%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGV-GCTGSYAAFTVVQASALLEVPDGVTDAQA 59
G E AGTV VG V +G V FGG G G +A +V AS D V A
Sbjct: 5236787 GREVAGTVTAVGSDVDGFSVGDEV--FGGCPGMVGGWAEQALVTASFAAHRSDAVPPEMA 5236614
Query: 60 AAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKA 119
A + TAH + + G+T++V+ A GG G+ V Q+A+ G V+G+ A+
Sbjct: 5236613 AVLPVAAGTAHDAL-RNLGLRAGATLLVNGAGGGVGIPVVQLARAWGITVVGVASPAKHD 5236437
Query: 120 MLA----TSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
++A V D ++D V RAAAP GVDAV+D VG
Sbjct: 5236436 LVAGFGAIPVAYGDGLLDRV---------RAAAPGGVDAVFDLVG 5236329
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 53/151 (35%), Positives = 65/151 (43%), Gaps = 25/151 (16%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAY-FGGVGC------------------------TGS 35
G EG G V VG V+E G RVA + GV C G
Sbjct: 2575832 GHEGVGIVESVGAEVTEVAEGDRVAIPWLGVACGTCDYCTSGWETLCEKQLNTGYLIDGG 2575653
Query: 36 YAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTG 95
YA + A + +VPDGV AA + C G+T + V S P +TV V GG G
Sbjct: 2575652 YAEYAKASAKYVAKVPDGVDPLDAAPLTCAGVTTYKAVKLS-GARPAATVAVF-GIGGLG 2575479
Query: 96 LLVCQMAKLRGARVIGICGGAEKAMLATSVG 126
L Q AK+ GARVI + EK LA +G
Sbjct: 2575478 HLALQYAKIFGARVIAVDVVDEKLELARELG 2575386
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 46/121 (38%), Positives = 58/121 (47%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V VGP V G RV G++A V L VPDG +DA AA
Sbjct: 808663 GTEAAGVVTAVGPDVDAFAPGDRVLGL----FQGAFAPIAVTDHRLLARVPDGWSDADAA 808830
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
AV TAHY + G +V++HAAAGG G+ +A+ GA V+ G A+
Sbjct: 808831 AVPIAYTTAHYALHDLAGLRAGQSVLIHAAAGGVGMAAVALARRAGAEVLATAGPAKHGT 809010
Query: 121 L 121
L
Sbjct: 809011 L 809013
Score = 49.7 bits (117), Expect = 3e-04, Method: Composition-based stats.
Identities = 39/111 (35%), Positives = 53/111 (47%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G EGAG V +V P V+ G RV G GS+ + + +P + QAA
Sbjct: 4583750 GGEGAGVVTEVAPDVTGLAPGDRVTGLFG----GSFGPVAIADHRTVARIPRDWSYEQAA 4583583
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIG 111
AV LTA+ + G +V+VH+AAGG G Q+A+ GA V G
Sbjct: 4583582 AVPIAYLTAYLGLVELGALRAGESVLVHSAAGGVGTAAVQLARHLGAHVFG 4583430
Score = 48.5 bits (114), Expect = 8e-04, Method: Composition-based stats.
Identities = 50/153 (32%), Positives = 71/153 (46%), Gaps = 17/153 (11%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRV----------------AYFGGVGCTGSYAAFTVVQA 44
G + G +V VG GVS +G+RV + G C G +A F V +
Sbjct: 3051733 GADVCGRIVDVGEGVSRDRVGERVLVRNMLRTPVGYRPFECWTFGSECDGGFAQFAVAPS 3051912
Query: 45 SALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGST-VVVHAAAGGTGLLVCQMAK 103
V +D + AAV C TA ++ + G G+ V+V A+GG GL Q+AK
Sbjct: 3051913 QEAHAVRCDWSDEELAAVPCAYSTAENMLHRA---GVGAERVLVTGASGGVGLAAVQLAK 3052083
Query: 104 LRGARVIGICGGAEKAMLATSVGRADVVIDYVA 136
RGA VI +C + +A + RA V+D VA
Sbjct: 3052084 RRGATVIAVCA---RPRVAGTAVRA--VVDLVA 3052167
Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats.
Identities = 49/162 (30%), Positives = 72/162 (44%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E +GT+ ++G GV+ +G +V + G YA V A+ +L VP GV +AA
Sbjct: 239611 GLECSGTIAELGEGVTGWTVGDQVC---ALLSGGGYAEQVAVPAAQVLPVPSGVDLVEAA 239441
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+ T V G ++VH +GG G Q+A GARV G E
Sbjct: 239440 GLPEVTCTVWSNVVMEAGLRGGQFLLVHGGSGGIGTCAIQVATALGARVAATAGSPETLQ 239261
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQA 162
L +G AD I Y D+ +V+ G D + D +G +
Sbjct: 239260 LCRELG-ADPAISY-RDEDFVEVVKGLG--GADVILDNMGAS 239147
Score = 43.1 bits (100), Expect = 0.029, Method: Composition-based stats.
Identities = 38/96 (39%), Positives = 49/96 (51%), Gaps = 1/96 (1%)
Frame = +3
Query: 66 GLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGA-RVIGICGGAEKAMLATS 124
G+TA+ + G V V AAG G + Q+AKL+GA RVIG G AEK T
Sbjct: 3759222 GMTAYVGLVEIASVKEGDVVFVSGAAGAVGAVAGQIAKLKGASRVIGSAGSAEKVRYITE 3759401
Query: 125 VGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
D +Y P + L +AAAP G+D +D VG
Sbjct: 3759402 ELGFDAAFNYKDGPVYDQL-KAAAPDGIDVYFDNVG 3759506
Score = 42.4 bits (98), Expect = 0.055, Method: Composition-based stats.
Identities = 40/127 (31%), Positives = 53/127 (41%)
Frame = -1
Query: 34 GSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGG 93
G++A + P + QAA + GLTA+ + + G G TV+VHAAAGG
Sbjct: 5782952 GTFAELVSAPVRTIARKPASLDWHQAAGLPLAGLTAYQSLARAEAAG-GETVLVHAAAGG 5782776
Query: 94 TGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVD 153
G Q+A +G RVIG L + +A VR AP GVD
Sbjct: 5782775 VGSFGVQIAAAKGLRVIGTASERNHDFLRELGAEPVTYGEGLAER-----VRELAPDGVD 5782611
Query: 154 AVYDGVG 160
D G
Sbjct: 5782610 VALDFAG 5782590
Score = 42.4 bits (98), Expect = 0.056, Method: Composition-based stats.
Identities = 41/134 (30%), Positives = 63/134 (47%), Gaps = 16/134 (11%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVA-----YFGG---------VGCT--GSYAAFTVVQA 44
G + G V +VG GV ++ +G+RV Y GG +G G +A + V A
Sbjct: 2082270 GADVVGHVDEVGEGVPDSRIGERVVVDPMLYTGGERELVTTEYLGSERDGGFAEYVTVPA 2082091
Query: 45 SALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKL 104
V +TDA+ A TA +++ + G VVV A+GG G + Q+A L
Sbjct: 2082090 GNAHPVRSSLTDAELATFPTAYTTAMRMLNRA-AVRDGERVVVTGASGGVGSALIQLAAL 2081914
Query: 105 RGARVIGICGGAEK 118
RGA V+ + A++
Sbjct: 2081913 RGAHVVAVTSAAKR 2081872
Score = 41.2 bits (95), Expect = 0.13, Method: Composition-based stats.
Identities = 29/76 (38%), Positives = 41/76 (53%)
Frame = -1
Query: 34 GSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGG 93
G YA VV S L +PDG+ +AA +LC G+T Y + + GPG V V GG
Sbjct: 2024327 GGYARQVVVDESYALRIPDGLPLDEAAPLLCAGITV-YSPLTRWGAGPGRRVAV-VGLGG 2024154
Query: 94 TGLLVCQMAKLRGARV 109
G + ++A+ +GA V
Sbjct: 2024153 LGHMAVKIARAKGAEV 2024106
Score = 40.8 bits (94), Expect = 0.15, Method: Composition-based stats.
Identities = 48/159 (30%), Positives = 74/159 (46%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E +GTV++VG VS G V + GS+ V+ +++ P ++ AQAA
Sbjct: 2805921 GLECSGTVLRVGEVVSGLRPGDEV-FAHSRDLFGSHVTLDEVR---VVKKPTTLSLAQAA 2806088
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
++L +TAH + G V+VH+ AGG GL ++A GA V G ++
Sbjct: 2806089 SLL-PAVTAHQSLVRLAGVRRGDRVLVHSGAGGVGLAAVRIAMWLGAEVYATAGSEQRRE 2806265
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGV 159
L G A V D +T ++R GVD V + +
Sbjct: 2806266 LLRREGVAGVS-DSRSTAFADDILRWTDGAGVDVVVNSL 2806379
Score = 39.7 bits (91), Expect = 0.29, Method: Composition-based stats.
Identities = 52/191 (27%), Positives = 72/191 (37%), Gaps = 26/191 (13%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGC-------------------------TGS 35
G E AG VV G VS G+RV+ GV C G+
Sbjct: 1037816 GHEAAGVVVARGAEVSRHEPGQRVSIEPGVPCFVCAQCRAGRYNLCPDVRFFATPPVDGA 1037995
Query: 36 YAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTG 95
+ + V VPD +TD AA LC+ L+ GPGS V+V AG G
Sbjct: 1037996 FCEYVAVHEEFAYAVPDSMTDE--AAALCEPLSVGVWACRKGGVGPGSRVLV-TGAGPIG 1038166
Query: 96 LLVCQMAKLRGARVIGICG-GAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDA 154
L+ Q A+ GA + + + LA+ +G V + D+ P V A
Sbjct: 1038167 LVATQTARAFGASEVVVTDVNPRRLELASELGATGTVDVRESAIDFEPEVLLECSGAPRA 1038346
Query: 155 VYDGVGQATFA 165
D + + T A
Sbjct: 1038347 AADAIRRVTRA 1038379
Score = 38.9 bits (89), Expect = 0.57, Method: Composition-based stats.
Identities = 35/95 (36%), Positives = 50/95 (52%), Gaps = 1/95 (1%)
Frame = -2
Query: 33 TGSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAG 92
T ++A T+V A+A + +P+ V QAA + C LT V ++ PG +VVV G
Sbjct: 2126386 TAAFATETLVGANACIPLPEDVPLEQAALLGCAVLTGAGAVFNAARVRPGESVVVF-GLG 2126210
Query: 93 GTGLLVCQMAKLRGA-RVIGICGGAEKAMLATSVG 126
G GL Q A++ GA VI + EK LA +G
Sbjct: 2126209 GIGLCAVQAARIAGAGPVIAVDPAVEKFDLARRLG 2126105
Score = 37.7 bits (86), Expect = 1.2, Method: Composition-based stats.
Identities = 51/188 (27%), Positives = 74/188 (39%), Gaps = 26/188 (13%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRV------------------------AYFGGVGCTGSY 36
G E AGTV +VGP V G +V + F G+ G
Sbjct: 7168045 GHENAGTVREVGPAVGNIKPGDKVILHPLVTCGLCRACRSGDDVHCENSRFPGINTDGGM 7167866
Query: 37 AAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGL 96
A + A +++ + G+ AA+ GLTA++ V + P T VV AGG G
Sbjct: 7167865 AELLLTNARSVVRLDAGLEPVDVAALADAGLTAYHAVRKAVPLLHPGTHVVLIGAGGLGH 7167686
Query: 97 LVCQ-MAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVR-AAAPKGVDA 154
+ Q + L A + + A+ LA+ +G V AT D VR +G
Sbjct: 7167685 IGLQSLIALTPAEITVVDRSAQALDLASELGAHHTV---EATGDHVEAVRDLTGGRGAHV 7167515
Query: 155 VYDGVGQA 162
V D VG+
Sbjct: 7167514 VLDFVGEG 7167491
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence
Length = 2914771
Score = 121 bits (303), Expect = 8e-26, Method: Composition-based stats.
Identities = 85/165 (51%), Positives = 98/165 (59%), Gaps = 1/165 (0%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
GEEGAG V+ VGP V+ G RVA+ GSYA +V + VPDG+ AA
Sbjct: 283179 GEEGAGCVIAVGPNVTRFKPGDRVAW---TTVMGSYATRVIVPEDKAIAVPDGIDLQTAA 283349
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A L QG+TAHYLV+ SY G V+VHAAAGG GLL+ Q K RG RVIG A KA
Sbjct: 283350 AALVQGMTAHYLVNDSYRAREGDVVLVHAAAGGVGLLLTQWLKRRGVRVIGTVSSAGKAA 283529
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAP-KGVDAVYDGVGQATF 164
LA S G DV++ + AT D VR KGV AVYDGVG ATF
Sbjct: 283530 LARSNGADDVLL-HRATDDLAAEVRRLTDGKGVHAVYDGVGAATF 283661
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 41/95 (43%), Positives = 54/95 (56%)
Frame = +1
Query: 66 GLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSV 125
GLTA+Y + P PG T+VV AAAG G + Q+ K+ GARV+GI GGA+K T
Sbjct: 624007 GLTAYYGLTEIAPVQPGETLVVSAAAGSVGSVAGQIGKIHGARVVGIAGGADKCRYLTDE 624186
Query: 126 GRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
D +DY A DW ++ A P GV ++ VG
Sbjct: 624187 LGFDAAVDYKAD-DWKRALKDATPDGVHVNFENVG 624288
Score = 41.6 bits (96), Expect = 0.082, Method: Composition-based stats.
Identities = 52/191 (27%), Positives = 73/191 (38%), Gaps = 26/191 (13%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAY-------------------------FGGVGCTGS 35
G EG G V VG GV G RV G GS
Sbjct: 513372 GHEGVGFVTAVGGGVKHVKEGDRVGVPWLYTACGHCEYCQTGWETLCHEQQNTGYSVNGS 513551
Query: 36 YAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTG 95
YA + + + + +P V + A +LC G+T + + + PG + + + GG G
Sbjct: 513552 YAEYVLADPNYVGHLPSNVAFDEIAPILCAGVTVYKGIRVT-DTRPGQWIAI-SGIGGLG 513725
Query: 96 LLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAV 155
+ Q AK G V+ + EK LA +G A VV A+ D P V GV V
Sbjct: 513726 HVAVQYAKAMGLHVVAVDVAHEKLELARKLGAAFVV---DASRDDPAAVIQKEIGGVHGV 513896
Query: 156 Y-DGVGQATFA 165
V ++ FA
Sbjct: 513897 LVTAVSRSAFA 513929
>gb|CP001074.1| Rhizobium etli CIAT 652, complete genome
Length = 4513324
Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats.
Identities = 76/165 (46%), Positives = 103/165 (62%), Gaps = 1/165 (0%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G+EGAGTV VGPGV++ LG RVAY G+Y+A ++ L+ VPDG+ AA
Sbjct: 2109347 GKEGAGTVTAVGPGVTDFRLGDRVAY---ASADGAYSAERNIETRHLVHVPDGIELETAA 2109517
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A++ +G+TA YL++ ++ GP + ++ HAAAGG GL+ Q AK GA VIG G +K
Sbjct: 2109518 AMMLKGMTAEYLLNRTFKVGPETVLLFHAAAGGVGLIAGQWAKALGATVIGTAGSEDKIA 2109697
Query: 121 LATSVGRADVVIDYVATPDWPPLVRA-AAPKGVDAVYDGVGQATF 164
LA + G D VI+Y T D+ VRA KGVD VYD +G+ TF
Sbjct: 2109698 LALAHGY-DHVINY-KTDDFLTRVRAITGGKGVDVVYDSIGRDTF 2109826
Score = 62.4 bits (150), Expect = 5e-08, Method: Composition-based stats.
Identities = 49/134 (36%), Positives = 66/134 (49%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G + AGTVVKVG V +G V G++A F + + P ++ ++AA
Sbjct: 524907 GHDLAGTVVKVGSRVRRFKVGDEVYARPRDHRVGTFAEFIAIDEADAALKPSNLSMSEAA 525086
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+V GLTA + PG V + A +GG G Q+AK GA + AE A
Sbjct: 525087 SVPLVGLTAWQALVEVGKIKPGQKVFIQAGSGGVGTFAIQLAKHLGA-AVATTTSAENAE 525263
Query: 121 LATSVGRADVVIDY 134
LA S+G ADVVIDY
Sbjct: 525264 LARSLG-ADVVIDY 525302
Score = 61.6 bits (148), Expect = 9e-08, Method: Composition-based stats.
Identities = 49/164 (29%), Positives = 78/164 (47%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E +G +V VGP V++ +G +V G+ G+YA + ++ + +L P G QAA
Sbjct: 1220008 GLELSGEIVAVGPDVTDHAVGDKVC---GLANGGAYAEYCLLPSGQILPFPKGYDAVQAA 1220178
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A+ T + G TV++H G G Q+A+ GA V G +K
Sbjct: 1220179 ALPETFFTVWANLFQMAGLTEGETVLIHGGTSGIGTTAIQLARAFGAEVYATAGSPKKCE 1220358
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
+G A I+Y + D+ ++RA +GVD + D +G A F
Sbjct: 1220359 ACERLG-AKRAINY-RSEDFAEVIRAETGQGVDIILDMIGAAYF 1220484
Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 57/191 (29%), Positives = 82/191 (42%), Gaps = 26/191 (13%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGC-------------------------TGS 35
G E +G V +GPGV+ + G+ V+ +G C G
Sbjct: 2583982 GAEASGVVEAIGPGVANVLPGQLVSIYGARTCGLCRPCREGRDNLCEHVSGVHGFHLDGF 2583803
Query: 36 YAAFTVVQASALLEVPDGVTDAQAA-AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGT 94
+ A L+ P GV AA A + G H L D++ PG T++VHA G
Sbjct: 2583802 AQEKVNLPARLLVPAPPGVDAIGAALAPVTFGTVEHMLFDNA-KLEPGETILVHAGGSGI 2583626
Query: 95 GLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDA 154
G Q+AK G VI G +K A ++G AD VI+Y + + KGVD
Sbjct: 2583625 GTAAIQLAKKIGCTVITTVGSDDKIEKAKALG-ADHVINYRTDRFEGVVRKLTKKKGVDV 2583449
Query: 155 VYDGVGQATFA 165
V++ VG+ T+A
Sbjct: 2583448 VFEHVGKDTWA 2583416
Score = 48.9 bits (115), Expect = 6e-04, Method: Composition-based stats.
Identities = 52/187 (27%), Positives = 71/187 (37%), Gaps = 26/187 (13%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCT------------------------GSY 36
G E AG VV G GV +G RV GC GS+
Sbjct: 1270464 GHELAGRVVATGRGVMRFKVGDRVTVPFVSGCGHCSECHSGNQQVCPNQFQPGFTHWGSF 1270285
Query: 37 AAFTVVQA--SALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGT 94
+ + + + L+ +PD + DA AA++ C+ T+ V GPG + VH GG
Sbjct: 1270284 SEYVAIDYADTNLVHLPDTIDDATAASLGCRFATSFRAVADHARTGPGEWIAVH-GCGGV 1270108
Query: 95 GLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDA 154
GL +A GA IGI EK A G A ++ + D VR G
Sbjct: 1270107 GLSAIMIATALGANAIGIDISEEKLAFARECG-AVATVNAASVADVAEAVREITKGGAHV 1269931
Query: 155 VYDGVGQ 161
D +G
Sbjct: 1269930 SIDALGH 1269910
Score = 41.6 bits (96), Expect = 0.082, Method: Composition-based stats.
Identities = 39/123 (31%), Positives = 57/123 (46%), Gaps = 1/123 (0%)
Frame = -2
Query: 12 GPGVSET-MLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAH 70
GPG + T R ++ GV + TV+ PD + A+A+ + C GLTA
Sbjct: 3549291 GPGTARTPHYRTRGGFYPGV-----LSEHTVLSEQWFTRAPDTLDAAEASTLPCAGLTAW 3549127
Query: 71 YLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADV 130
+ + G V+V GG L Q+AK GA V G AEK A+++G AD
Sbjct: 3549126 FALIECGRLKAGDKVLVQ-GTGGVALFGLQIAKAHGAEVFITSGSAEKLERASALG-ADH 3548953
Query: 131 VID 133
+I+
Sbjct: 3548952 LIN 3548944
>gb|CP000686.1| Roseiflexus sp. RS-1, complete genome
Length = 5801598
Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats.
Identities = 78/164 (47%), Positives = 96/164 (58%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V VGP VS+ +G RV Y G+YA + +V A+ L VP+G+ QAA
Sbjct: 1807959 GMEAAGIVDAVGPDVSDVRVGDRVVY---AMRQGAYAEYAIVPATMLAPVPEGIDLHQAA 1807789
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
AV+ QG+TAHYL S+YP PG ++HAAAGG GLL+ Q+AK GARVIG EKA
Sbjct: 1807788 AVMLQGMTAHYLTHSTYPLRPGEVALIHAAAGGVGLLLVQIAKRCGARVIGTVSTEEKAA 1807609
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
LA G AD +I Y + R GV VYD VG+ TF
Sbjct: 1807608 LAREAG-ADDIILYTQEDFSAAVRRLTDGVGVHVVYDSVGKTTF 1807480
Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 42/127 (33%), Positives = 62/127 (48%)
Frame = +2
Query: 34 GSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGG 93
G YA VV ++ +PD ++ +A A+ LTA + + G TV++HA A G
Sbjct: 4685726 GGYAELAVVPVGMVMRIPDSLSFEEAGAIPEAFLTAFLNLFTLGRLQAGETVLIHAGASG 4685905
Query: 94 TGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVD 153
G Q+A++ GARV G EK L +G A++ I+Y + A +GVD
Sbjct: 4685906 VGTAAIQLARVAGARVFATAGSPEKCALCRELG-AELTINYREESFAARALDATGGRGVD 4686082
Query: 154 AVYDGVG 160
V D VG
Sbjct: 4686083 LVLDFVG 4686103
Score = 36.6 bits (83), Expect = 2.7, Method: Composition-based stats.
Identities = 37/139 (26%), Positives = 61/139 (43%), Gaps = 3/139 (2%)
Frame = +3
Query: 30 VGCTGSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHA 89
+G +G + + VV A+ + VP+ + D QAA TA ++ + PG V+ +A
Sbjct: 3270804 MGASGLWQEYVVVPAARAIPVPEPIGDRQAATAFVNPATAWLMLTETLRVEPGEWVLQNA 3270983
Query: 90 AAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAA- 148
A+ G V Q+ + R I + E ++G +V+ + D + R A
Sbjct: 3270984 ASSVVGRHVIQLGQRLNFRTINVVRRREVIDELRAMGADEVICE----QDENVVARVHAL 3271151
Query: 149 --PKGVDAVYDGVGQATFA 165
KGV D VG A+ A
Sbjct: 3271152 TGGKGVRYALDSVGGASGA 3271208
Score = 34.7 bits (78), Expect = 9.7, Method: Composition-based stats.
Identities = 50/158 (31%), Positives = 64/158 (40%), Gaps = 25/158 (15%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAY-FGGVGC------------------------TGS 35
G EG G V VG GV+ G RVA + G C G+
Sbjct: 932654 GHEGVGIVESVGAGVTNVKEGDRVAIPWLGYACGDCKYCASGWETLCERQLNTGYFLDGA 932475
Query: 36 YAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTG 95
YA + A + VP GV+ AA + C G+T + V S P V V GG G
Sbjct: 932474 YAQYAKAYAKYVGIVPAGVSALDAAPLTCAGVTTYKAVKVS-GARPSELVAVF-GVGGLG 932301
Query: 96 LLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVID 133
L Q AK+ GA V I E+ A +G AD+ I+
Sbjct: 932300 HLALQYAKIAGATVAAIDLLDERLQTARELG-ADITIN 932190
>gb|CP000547.1| Burkholderia mallei NCTC 10247 chromosome II, complete sequence
Length = 2352693
Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats.
Identities = 81/164 (49%), Positives = 94/164 (57%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
GEEGAG V+ VGP V+ G RVA+ GSYA VV + VPDG+ AA
Sbjct: 2136318 GEEGAGRVLAVGPDVTRFKPGDRVAW---TTVMGSYATRVVVPEDKAIAVPDGIDLRTAA 2136148
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A L QG+TAHYLV+ SY G V+VHAAAGG GLL+ Q K RG RVIG A KA
Sbjct: 2136147 AALVQGMTAHYLVNDSYRAREGDVVLVHAAAGGVGLLLTQWLKRRGVRVIGTVSTAGKAA 2135968
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
LA S G DVV+ + R +GV AVYDG+G ATF
Sbjct: 2135967 LARSNGADDVVLHGAFDDLAAEVRRLTDGRGVHAVYDGIGAATF 2135836
Score = 84.3 bits (207), Expect = 1e-14, Method: Composition-based stats.
Identities = 66/166 (39%), Positives = 90/166 (54%), Gaps = 1/166 (0%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V VG V+ +G+RV Y G G+Y+ V+ A +L+ +PD + AA
Sbjct: 2263242 GVEAAGIVTAVGGNVAGLAVGERVTYTGSP--LGAYSTERVMPADSLIRLPDAIGFDTAA 2263415
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A+ +GLT+ YL+ + G T ++HAAAGG GL+VCQ AKL G VIG EKA
Sbjct: 2263416 AMTMRGLTSAYLMRRIHAWQAGDTFLLHAAAGGVGLIVCQWAKLLGLNVIGTVSSDEKAD 2263595
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPK-GVDAVYDGVGQATFA 165
+A + G V++ D VR GV V D VG++TFA
Sbjct: 2263596 IARAHGCDHVIVH--RREDVAKRVRELTNGVGVAVVIDSVGKSTFA 2263727
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 40/95 (42%), Positives = 54/95 (56%)
Frame = +3
Query: 66 GLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSV 125
GLTA+Y + P PG T+VV AAAG G + Q+ K+ GARV+GI GGA+K T
Sbjct: 246645 GLTAYYGLTEIAPVQPGETLVVSAAAGSVGSVAGQIGKIHGARVVGIAGGADKCRYLTDE 246824
Query: 126 GRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
D +DY + DW ++ A P GV ++ VG
Sbjct: 246825 LGFDAAVDY-KSDDWKRALKDATPDGVHVSFENVG 246926
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 37/65 (56%)
Frame = -3
Query: 100 QMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGV 159
Q+AKL+G RV+GI GGA+K D +D+ PD+ + AA P G+D ++ V
Sbjct: 1238131 QIAKLKGCRVVGIAGGADKCRYVAGTLGFDACVDH-HDPDFAKQLAAACPDGIDVYFENV 1237955
Query: 160 GQATF 164
G A F
Sbjct: 1237954 GGAVF 1237940
Score = 41.6 bits (96), Expect = 0.084, Method: Composition-based stats.
Identities = 39/119 (32%), Positives = 59/119 (49%)
Frame = -1
Query: 14 GVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLV 73
GV G+RV +FG G+ A T+V A+ + +PD + DA AAA+ G+++ +
Sbjct: 1460499 GVGRLDDGRRVYFFGPPAPFGALAERTLVPAAQCIPLPDSIDDATAAAIAIPGMSSWAAL 1460320
Query: 74 DSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVI 132
G TV+V+ A G +G L ++AK GA + G A+ A S AD I
Sbjct: 1460319 TERARLAAGETVLVNGATGASGRLAVRIAKHLGAASVIATGRNAHALDALSSAGADATI 1460143
Score = 38.5 bits (88), Expect = 0.68, Method: Composition-based stats.
Identities = 51/191 (26%), Positives = 73/191 (38%), Gaps = 26/191 (13%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAY-------------------------FGGVGCTGS 35
G EG G V VG GV G RV G GS
Sbjct: 129419 GHEGVGFVAAVGEGVRHVKEGDRVGVPWLYTACGHCEYCQTGWETLCHEQQNTGYSVNGS 129598
Query: 36 YAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTG 95
YA + + + + +P V + A +LC G+T + + + PG + + + GG G
Sbjct: 129599 YAEYVLADPNYVGHLPSNVAFDEIAPILCAGVTVYKGIRVT-DTRPGQWIAI-SGIGGLG 129772
Query: 96 LLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAV 155
+ Q AK G V+ + +K LA +G A V+D A+ D P V GV V
Sbjct: 129773 HVAVQYAKAMGLHVVAVDVAPQKLELARKLG-ATFVVD--ASKDDPAAVIQKEIGGVHGV 129943
Query: 156 Y-DGVGQATFA 165
V + FA
Sbjct: 129944 LVTAVSRGAFA 129976
>gb|CP000573.1| Burkholderia pseudomallei 1106a chromosome II, complete sequence
Length = 3100794
Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats.
Identities = 81/164 (49%), Positives = 94/164 (57%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
GEEGAG V+ VGP V+ G RVA+ GSYA VV + VPDG+ AA
Sbjct: 216965 GEEGAGRVLAVGPDVTRFKPGDRVAW---TTVMGSYATRVVVPEDKAIAVPDGIDLRTAA 217135
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A L QG+TAHYLV+ SY G V+VHAAAGG GLL+ Q K RG RVIG A KA
Sbjct: 217136 AALVQGMTAHYLVNDSYRAREGDVVLVHAAAGGVGLLLTQWLKRRGVRVIGTVSTAGKAA 217315
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
LA S G DVV+ + R +GV AVYDG+G ATF
Sbjct: 217316 LARSNGADDVVLHGAFDDLAAEVRRLTDGRGVHAVYDGIGAATF 217447
Score = 84.3 bits (207), Expect = 1e-14, Method: Composition-based stats.
Identities = 66/166 (39%), Positives = 90/166 (54%), Gaps = 1/166 (0%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V VG V+ +G+RV Y G G+Y+ V+ A +L+ +PD + AA
Sbjct: 3013539 GVEAAGIVTAVGGNVAGLAVGERVTYTGSP--LGAYSTERVMPADSLIRLPDAIGFDTAA 3013712
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A+ +GLT+ YL+ + G T ++HAAAGG GL+VCQ AKL G VIG EKA
Sbjct: 3013713 AMTMRGLTSAYLMRRIHAWQAGDTFLLHAAAGGVGLIVCQWAKLLGLNVIGTVSSDEKAD 3013892
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPK-GVDAVYDGVGQATFA 165
+A + G V++ D VR GV V D VG++TFA
Sbjct: 3013893 IARAHGCDHVIVH--RREDVAKRVRELTNGVGVAVVIDSVGKSTFA 3014024
Score = 68.6 bits (166), Expect = 6e-10, Method: Composition-based stats.
Identities = 40/95 (42%), Positives = 54/95 (56%)
Frame = -3
Query: 66 GLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSV 125
GLTA+Y + P PG T+VV AAAG G + Q+ K+ GARV+GI GGA+K T
Sbjct: 2471665 GLTAYYGLTEIAPVQPGETLVVSAAAGSVGSVAGQIGKIHGARVVGIAGGADKCRYLTDE 2471486
Query: 126 GRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
D +DY + DW ++ A P GV ++ VG
Sbjct: 2471485 LGFDAAVDY-KSDDWKRALKDATPDGVHVSFENVG 2471384
Score = 45.8 bits (107), Expect = 0.004, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 36/65 (55%)
Frame = -2
Query: 100 QMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGV 159
Q+AKL+G RV+GI GGA+K D +D+ PD+ + A P G+D ++ V
Sbjct: 1658678 QIAKLKGCRVVGIAGGADKCRYVAGTLGFDACVDH-HDPDFAKQLADACPDGIDVYFENV 1658502
Query: 160 GQATF 164
G A F
Sbjct: 1658501 GGAVF 1658487
Score = 41.6 bits (96), Expect = 0.085, Method: Composition-based stats.
Identities = 39/119 (32%), Positives = 59/119 (49%)
Frame = +3
Query: 14 GVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLV 73
GV G+RV +FG G+ A T+V A+ + +PD + DA AAA+ G+++ +
Sbjct: 921903 GVGRLDDGRRVYFFGPPAPFGALAERTLVPAAQCIPLPDSIDDATAAAIAIPGMSSWAAL 922082
Query: 74 DSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVI 132
G TV+V+ A G +G L ++AK GA + G A+ A S AD I
Sbjct: 922083 TERARLAAGETVLVNGATGASGRLAVRIAKHLGAASVIATGRNAHALDALSSAGADATI 922259
Score = 38.5 bits (88), Expect = 0.68, Method: Composition-based stats.
Identities = 51/191 (26%), Positives = 73/191 (38%), Gaps = 26/191 (13%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAY-------------------------FGGVGCTGS 35
G EG G V VG GV G RV G GS
Sbjct: 2585024 GHEGVGFVAAVGEGVRHVKEGDRVGVPWLYTACGHCEYCQTGWETLCHEQQNTGYSVNGS 2584845
Query: 36 YAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTG 95
YA + + + + +P V + A +LC G+T + + + PG + + + GG G
Sbjct: 2584844 YAEYVLADPNYVGHLPSNVAFDEIAPILCAGVTVYKGIRVT-DTRPGQWIAI-SGIGGLG 2584671
Query: 96 LLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAV 155
+ Q AK G V+ + +K LA +G A V+D A+ D P V GV V
Sbjct: 2584670 HVAVQYAKAMGLHVVAVDVAPQKLELARKLG-ATFVVD--ASKDDPAAVIQKEIGGVHGV 2584500
Query: 156 Y-DGVGQATFA 165
V + FA
Sbjct: 2584499 LVTAVSRGAFA 2584467
>gb|CP000571.1| Burkholderia pseudomallei 668 chromosome II, complete sequence
Length = 3127456
Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats.
Identities = 81/164 (49%), Positives = 94/164 (57%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
GEEGAG V+ VGP V+ G RVA+ GSYA VV + VPDG+ AA
Sbjct: 285902 GEEGAGRVLAVGPDVTRFKPGDRVAW---TTVMGSYATRVVVPEDKAIAVPDGIDLRTAA 286072
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A L QG+TAHYLV+ SY G V+VHAAAGG GLL+ Q K RG RVIG A KA
Sbjct: 286073 AALVQGMTAHYLVNDSYRAREGDVVLVHAAAGGVGLLLTQWLKRRGVRVIGTVSTAGKAA 286252
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
LA S G DVV+ + R +GV AVYDG+G ATF
Sbjct: 286253 LARSNGADDVVLHGAFDDLAAEVRRLTDGRGVHAVYDGIGAATF 286384
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 40/95 (42%), Positives = 54/95 (56%)
Frame = -1
Query: 66 GLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSV 125
GLTA+Y + P PG T+VV AAAG G + Q+ K+ GARV+GI GGA+K T
Sbjct: 2545012 GLTAYYGLTEIAPVQPGETLVVSAAAGSVGSVAGQIGKIHGARVVGIAGGADKCRYLTDE 2544833
Query: 126 GRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
D +DY + DW ++ A P GV ++ VG
Sbjct: 2544832 LGFDAAVDY-KSDDWKRALKDATPDGVHVSFENVG 2544731
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 37/65 (56%)
Frame = -2
Query: 100 QMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGV 159
Q+AKL+G RV+GI GGA+K D +D+ PD+ + AA P G+D ++ V
Sbjct: 1725375 QIAKLKGCRVVGIAGGADKCRYVAGTLGFDACVDH-HDPDFAKQLAAACPDGIDVYFENV 1725199
Query: 160 GQATF 164
G A F
Sbjct: 1725198 GGAVF 1725184
Score = 41.6 bits (96), Expect = 0.085, Method: Composition-based stats.
Identities = 39/119 (32%), Positives = 59/119 (49%)
Frame = +3
Query: 14 GVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLV 73
GV G+RV +FG G+ A T+V A+ + +PD + DA AAA+ G+++ +
Sbjct: 995991 GVGRLDDGRRVYFFGPPAPFGALAERTLVPAAQCIPLPDSIDDATAAAIAIPGMSSWAAL 996170
Query: 74 DSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVI 132
G TV+V+ A G +G L ++AK GA + G A+ A S AD I
Sbjct: 996171 TERARLAAGETVLVNGATGASGRLAVRIAKHLGAASVIATGRNAHALDALSSAGADATI 996347
Score = 38.9 bits (89), Expect = 0.52, Method: Composition-based stats.
Identities = 41/156 (26%), Positives = 60/156 (38%), Gaps = 25/156 (16%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAY-------------------------FGGVGCTGS 35
G EG G V VG GV G RV G GS
Sbjct: 2657855 GHEGVGFVAAVGEGVRHVKEGDRVGVPWLYTACGHCEYCQTGWETLCHEQQNTGYSVNGS 2657676
Query: 36 YAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTG 95
YA + + + + +P V + A +LC G+T + + + PG + + + GG G
Sbjct: 2657675 YAEYVLADPNYVGHLPSNVAFDEIAPILCAGVTVYKGIRVT-DTRPGQWIAI-SGIGGLG 2657502
Query: 96 LLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVV 131
+ Q AK G V+ + +K LA +G A VV
Sbjct: 2657501 HVAVQYAKAMGLHVVAVDVAPQKLELARKLGAAFVV 2657394
>gb|CP000545.1| Burkholderia mallei NCTC 10229 chromosome II, complete sequence
Length = 2284095
Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats.
Identities = 81/164 (49%), Positives = 94/164 (57%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
GEEGAG V+ VGP V+ G RVA+ GSYA VV + VPDG+ AA
Sbjct: 1278731 GEEGAGRVLAVGPDVTRFKPGDRVAW---TTVMGSYATRVVVPEDKAIAVPDGIDLRTAA 1278561
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A L QG+TAHYLV+ SY G V+VHAAAGG GLL+ Q K RG RVIG A KA
Sbjct: 1278560 AALVQGMTAHYLVNDSYRAREGDVVLVHAAAGGVGLLLTQWLKRRGVRVIGTVSTAGKAA 1278381
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
LA S G DVV+ + R +GV AVYDG+G ATF
Sbjct: 1278380 LARSNGADDVVLHGAFDDLAAEVRRLTDGRGVHAVYDGIGAATF 1278249
Score = 84.3 bits (207), Expect = 1e-14, Method: Composition-based stats.
Identities = 66/166 (39%), Positives = 90/166 (54%), Gaps = 1/166 (0%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V VG V+ +G+RV Y G G+Y+ V+ A +L+ +PD + AA
Sbjct: 1405676 GVEAAGIVTAVGGNVAGLAVGERVTYTGSP--LGAYSTERVMPADSLIRLPDAIGFDTAA 1405849
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A+ +GLT+ YL+ + G T ++HAAAGG GL+VCQ AKL G VIG EKA
Sbjct: 1405850 AMTMRGLTSAYLMRRIHAWQAGDTFLLHAAAGGVGLIVCQWAKLLGLNVIGTVSSDEKAD 1406029
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPK-GVDAVYDGVGQATFA 165
+A + G V++ D VR GV V D VG++TFA
Sbjct: 1406030 IARAHGCDHVIVH--RREDVAKRVRELTNGVGVAVVIDSVGKSTFA 1406161
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 40/95 (42%), Positives = 54/95 (56%)
Frame = +1
Query: 66 GLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSV 125
GLTA+Y + P PG T+VV AAAG G + Q+ K+ GARV+GI GGA+K T
Sbjct: 1674541 GLTAYYGLTEIAPVQPGETLVVSAAAGSVGSVAGQIGKIHGARVVGIAGGADKCRYLTDE 1674720
Query: 126 GRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
D +DY + DW ++ A P GV ++ VG
Sbjct: 1674721 LGFDAAVDY-KSDDWKRALKDATPDGVHVSFENVG 1674822
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 37/65 (56%)
Frame = +2
Query: 100 QMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGV 159
Q+AKL+G RV+GI GGA+K D +D+ PD+ + AA P G+D ++ V
Sbjct: 317165 QIAKLKGCRVVGIAGGADKCRYVAGTLGFDACVDH-HDPDFAKQLAAACPDGIDVYFENV 317341
Query: 160 GQATF 164
G A F
Sbjct: 317342 GGAVF 317356
Score = 41.6 bits (96), Expect = 0.084, Method: Composition-based stats.
Identities = 39/119 (32%), Positives = 59/119 (49%)
Frame = +3
Query: 14 GVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLV 73
GV G+RV +FG G+ A T+V A+ + +PD + DA AAA+ G+++ +
Sbjct: 94812 GVGRLDDGRRVYFFGPPAPFGALAERTLVPAAQCIPLPDSIDDATAAAIAIPGMSSWAAL 94991
Query: 74 DSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVI 132
G TV+V+ A G +G L ++AK GA + G A+ A S AD I
Sbjct: 94992 TERARLAAGETVLVNGATGASGRLAVRIAKHLGAASVIATGRNAHALDALSSAGADATI 95168
>gb|CP000525.1| Burkholderia mallei SAVP1 chromosome II, complete sequence
Length = 1734922
Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats.
Identities = 81/164 (49%), Positives = 94/164 (57%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
GEEGAG V+ VGP V+ G RVA+ GSYA VV + VPDG+ AA
Sbjct: 949199 GEEGAGRVLAVGPDVTRFKPGDRVAW---TTVMGSYATRVVVPEDKAIAVPDGIDLRTAA 949029
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A L QG+TAHYLV+ SY G V+VHAAAGG GLL+ Q K RG RVIG A KA
Sbjct: 949028 AALVQGMTAHYLVNDSYRAREGDVVLVHAAAGGVGLLLTQWLKRRGVRVIGTVSTAGKAA 948849
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
LA S G DVV+ + R +GV AVYDG+G ATF
Sbjct: 948848 LARSNGADDVVLHGAFDDLAAEVRRLTDGRGVHAVYDGIGAATF 948717
Score = 84.3 bits (207), Expect = 1e-14, Method: Composition-based stats.
Identities = 66/166 (39%), Positives = 90/166 (54%), Gaps = 1/166 (0%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V VG V+ +G+RV Y G G+Y+ V+ A +L+ +PD + AA
Sbjct: 1075934 GVEAAGIVTAVGGNVAGLAVGERVTYTGSP--LGAYSTERVMPADSLIRLPDAIGFDTAA 1076107
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A+ +GLT+ YL+ + G T ++HAAAGG GL+VCQ AKL G VIG EKA
Sbjct: 1076108 AMTMRGLTSAYLMRRIHAWQAGDTFLLHAAAGGVGLIVCQWAKLLGLNVIGTVSSDEKAD 1076287
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPK-GVDAVYDGVGQATFA 165
+A + G V++ D VR GV V D VG++TFA
Sbjct: 1076288 IARAHGCDHVIVH--RREDVAKRVRELTNGVGVAVVIDSVGKSTFA 1076419
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 40/95 (42%), Positives = 54/95 (56%)
Frame = +1
Query: 66 GLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSV 125
GLTA+Y + P PG T+VV AAAG G + Q+ K+ GARV+GI GGA+K T
Sbjct: 1409701 GLTAYYGLTEIAPVQPGETLVVSAAAGSVGSVAGQIGKIHGARVVGIAGGADKCRYLTDE 1409880
Query: 126 GRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
D +DY + DW ++ A P GV ++ VG
Sbjct: 1409881 LGFDAAVDY-KSDDWKRALKDATPDGVHVSFENVG 1409982
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 37/65 (56%)
Frame = -3
Query: 100 QMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGV 159
Q+AKL+G RV+GI GGA+K D +D+ PD+ + AA P G+D ++ V
Sbjct: 99170 QIAKLKGCRVVGIAGGADKCRYVAGTLGFDACVDH-HDPDFAKQLAAACPDGIDVYFENV 98994
Query: 160 GQATF 164
G A F
Sbjct: 98993 GGAVF 98979
Score = 38.5 bits (88), Expect = 0.68, Method: Composition-based stats.
Identities = 51/191 (26%), Positives = 73/191 (38%), Gaps = 26/191 (13%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAY-------------------------FGGVGCTGS 35
G EG G V VG GV G RV G GS
Sbjct: 1292426 GHEGVGFVAAVGEGVRHVKEGDRVGVPWLYTACGHCEYCQTGWETLCHEQQNTGYSVNGS 1292605
Query: 36 YAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTG 95
YA + + + + +P V + A +LC G+T + + + PG + + + GG G
Sbjct: 1292606 YAEYVLADPNYVGHLPSNVAFDEIAPILCAGVTVYKGIRVT-DTRPGQWIAI-SGIGGLG 1292779
Query: 96 LLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAV 155
+ Q AK G V+ + +K LA +G A V+D A+ D P V GV V
Sbjct: 1292780 HVAVQYAKAMGLHVVAVDVAPQKLELARKLG-ATFVVD--ASKDDPAAVIQKEIGGVHGV 1292950
Query: 156 Y-DGVGQATFA 165
V + FA
Sbjct: 1292951 LVTAVSRGAFA 1292983
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence
Length = 3181762
Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats.
Identities = 81/164 (49%), Positives = 94/164 (57%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
GEEGAG V+ VGP V+ G RVA+ GSYA VV + VPDG+ AA
Sbjct: 2055653 GEEGAGRVLAVGPDVTRFKPGDRVAW---TTVMGSYATRVVVPEDKAIAVPDGIDLRTAA 2055823
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A L QG+TAHYLV+ SY G V+VHAAAGG GLL+ Q K RG RVIG A KA
Sbjct: 2055824 AALVQGMTAHYLVNDSYRAREGDVVLVHAAAGGVGLLLTQWLKRRGVRVIGTVSTAGKAA 2056003
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
LA S G DVV+ + R +GV AVYDG+G ATF
Sbjct: 2056004 LARSNGADDVVLHGAFDDLAAEVRRLTDGRGVHAVYDGIGAATF 2056135
Score = 84.7 bits (208), Expect = 8e-15, Method: Composition-based stats.
Identities = 66/166 (39%), Positives = 90/166 (54%), Gaps = 1/166 (0%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V VG V+ +G+RV Y G G+Y+ V+ A +L+ +PD + AA
Sbjct: 1750888 GVEAAGIVTAVGGNVAGLAVGERVTYTGSP--LGAYSTERVMPADSLIRLPDAIGFDTAA 1751061
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A+ +GLT+ YL+ + G T ++HAAAGG GL+VCQ AKL G VIG EKA
Sbjct: 1751062 AMTMRGLTSAYLMRRIHAWQAGDTFLLHAAAGGVGLIVCQWAKLLGLNVIGTVSSDEKAD 1751241
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPK-GVDAVYDGVGQATFA 165
+A + G V++ D VR GV V D VG++TFA
Sbjct: 1751242 IARAHGCDHVIVH--RREDVAKRVRELTNGVGVTVVIDSVGKSTFA 1751373
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 40/95 (42%), Positives = 54/95 (56%)
Frame = -1
Query: 66 GLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSV 125
GLTA+Y + P PG T+VV AAAG G + Q+ K+ GARV+GI GGA+K T
Sbjct: 1201540 GLTAYYGLTEIAPVQPGETLVVSAAAGSVGSVAGQIGKIHGARVVGIAGGADKCRYLTDE 1201361
Query: 126 GRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
D +DY + DW ++ A P GV ++ VG
Sbjct: 1201360 LGFDAAVDY-KSDDWKRALKDATPDGVHVSFENVG 1201259
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 37/65 (56%)
Frame = -1
Query: 100 QMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGV 159
Q+AKL+G RV+GI GGA+K D +D+ PD+ + AA P G+D ++ V
Sbjct: 385705 QIAKLKGCRVVGIAGGADKCRYVAGTLGFDACVDH-HDPDFAKQLAAACPDGIDVYFENV 385529
Query: 160 GQATF 164
G A F
Sbjct: 385528 GGAVF 385514
Score = 41.6 bits (96), Expect = 0.084, Method: Composition-based stats.
Identities = 39/119 (32%), Positives = 59/119 (49%)
Frame = +1
Query: 14 GVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLV 73
GV G+RV +FG G+ A T+V A+ + +PD + DA AAA+ G+++ +
Sbjct: 2760301 GVGRLDDGRRVYFFGPPAPFGALAERTLVPAAQCIPLPDSIDDATAAAIAIPGMSSWAAL 2760480
Query: 74 DSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVI 132
G TV+V+ A G +G L ++AK GA + G A+ A S AD I
Sbjct: 2760481 TERARLAAGETVLVNGATGASGRLAVRIAKHLGAASVIATGRNAHALDALSSAGADATI 2760657
Score = 38.9 bits (89), Expect = 0.52, Method: Composition-based stats.
Identities = 41/156 (26%), Positives = 60/156 (38%), Gaps = 25/156 (16%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAY-------------------------FGGVGCTGS 35
G EG G V VG GV G RV G GS
Sbjct: 1314533 GHEGVGFVAAVGEGVRHVKEGDRVGVPWLYTACGHCEYCQTGWETLCHEQQNTGYSVNGS 1314354
Query: 36 YAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTG 95
YA + + + + +P V + A +LC G+T + + + PG + + + GG G
Sbjct: 1314353 YAEYVLADPNYVGHLPSNVAFDEIAPILCAGVTVYKGIRVT-DTRPGQWIAI-SGIGGLG 1314180
Query: 96 LLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVV 131
+ Q AK G V+ + +K LA +G A VV
Sbjct: 1314179 HVAVQYAKAMGLHVVAVDVAPQKLELARKLGAAFVV 1314072
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence
Length = 2325379
Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats.
Identities = 81/164 (49%), Positives = 94/164 (57%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
GEEGAG V+ VGP V+ G RVA+ GSYA VV + VPDG+ AA
Sbjct: 2107747 GEEGAGRVLAVGPDVTRFKPGDRVAW---TTVMGSYATRVVVPEDKAIAVPDGIDLRTAA 2107577
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A L QG+TAHYLV+ SY G V+VHAAAGG GLL+ Q K RG RVIG A KA
Sbjct: 2107576 AALVQGMTAHYLVNDSYRAREGDVVLVHAAAGGVGLLLTQWLKRRGVRVIGTVSTAGKAA 2107397
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
LA S G DVV+ + R +GV AVYDG+G ATF
Sbjct: 2107396 LARSNGADDVVLHGAFDDLAAEVRRLTDGRGVHAVYDGIGAATF 2107265
Score = 84.3 bits (207), Expect = 1e-14, Method: Composition-based stats.
Identities = 66/166 (39%), Positives = 90/166 (54%), Gaps = 1/166 (0%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V VG V+ +G+RV Y G G+Y+ V+ A +L+ +PD + AA
Sbjct: 2234407 GVEAAGIVTAVGGNVAGLAVGERVTYTGSP--LGAYSTERVMPADSLIRLPDAIGFDTAA 2234580
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A+ +GLT+ YL+ + G T ++HAAAGG GL+VCQ AKL G VIG EKA
Sbjct: 2234581 AMTMRGLTSAYLMRRIHAWQAGDTFLLHAAAGGVGLIVCQWAKLLGLNVIGTVSSDEKAD 2234760
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPK-GVDAVYDGVGQATFA 165
+A + G V++ D VR GV V D VG++TFA
Sbjct: 2234761 IARAHGCDHVIVH--RREDVAKRVRELTNGVGVAVVIDSVGKSTFA 2234892
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 40/95 (42%), Positives = 54/95 (56%)
Frame = +2
Query: 66 GLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSV 125
GLTA+Y + P PG T+VV AAAG G + Q+ K+ GARV+GI GGA+K T
Sbjct: 245486 GLTAYYGLTEIAPVQPGETLVVSAAAGSVGSVAGQIGKIHGARVVGIAGGADKCRYLTDE 245665
Query: 126 GRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
D +DY + DW ++ A P GV ++ VG
Sbjct: 245666 LGFDAAVDY-KSDDWKRALKDATPDGVHVSFENVG 245767
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 37/65 (56%)
Frame = -1
Query: 100 QMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGV 159
Q+AKL+G RV+GI GGA+K D +D+ PD+ + AA P G+D ++ V
Sbjct: 1155196 QIAKLKGCRVVGIAGGADKCRYVAGTLGFDACVDH-HDPDFAKQLAAACPDGIDVYFENV 1155020
Query: 160 GQATF 164
G A F
Sbjct: 1155019 GGAVF 1155005
Score = 41.6 bits (96), Expect = 0.084, Method: Composition-based stats.
Identities = 39/119 (32%), Positives = 59/119 (49%)
Frame = -2
Query: 14 GVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLV 73
GV G+RV +FG G+ A T+V A+ + +PD + DA AAA+ G+++ +
Sbjct: 1188519 GVGRLDDGRRVYFFGPPAPFGALAERTLVPAAQCIPLPDSIDDATAAAIAIPGMSSWAAL 1188340
Query: 74 DSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVI 132
G TV+V+ A G +G L ++AK GA + G A+ A S AD I
Sbjct: 1188339 TERARLAAGETVLVNGATGASGRLAVRIAKHLGAASVIATGRNAHALDALSSAGADATI 1188163
Score = 38.5 bits (88), Expect = 0.68, Method: Composition-based stats.
Identities = 51/191 (26%), Positives = 73/191 (38%), Gaps = 26/191 (13%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAY-------------------------FGGVGCTGS 35
G EG G V VG GV G RV G GS
Sbjct: 128295 GHEGVGFVAAVGEGVRHVKEGDRVGVPWLYTACGHCEYCQTGWETLCHEQQNTGYSVNGS 128474
Query: 36 YAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTG 95
YA + + + + +P V + A +LC G+T + + + PG + + + GG G
Sbjct: 128475 YAEYVLADPNYVGHLPSNVAFDEIAPILCAGVTVYKGIRVT-DTRPGQWIAI-SGIGGLG 128648
Query: 96 LLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAV 155
+ Q AK G V+ + +K LA +G A V+D A+ D P V GV V
Sbjct: 128649 HVAVQYAKAMGLHVVAVDVAPQKLELARKLG-ATFVVD--ASKDDPAAVIQKEIGGVHGV 128819
Query: 156 Y-DGVGQATFA 165
V + FA
Sbjct: 128820 LVTAVSRGAFA 128852
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence
Length = 3173005
Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats.
Identities = 81/164 (49%), Positives = 94/164 (57%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
GEEGAG V+ VGP V+ G RVA+ GSYA VV + VPDG+ AA
Sbjct: 217194 GEEGAGRVLAVGPDVTRFKPGDRVAW---TTVMGSYATRVVVPEDKAIAVPDGIDLRTAA 217364
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A L QG+TAHYLV+ SY G V+VHAAAGG GLL+ Q K RG RVIG A KA
Sbjct: 217365 AALVQGMTAHYLVNDSYRAREGDVVLVHAAAGGVGLLLTQWLKRRGVRVIGTVSTAGKAA 217544
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
LA S G DVV+ + R +GV AVYDG+G ATF
Sbjct: 217545 LARSNGADDVVLHGAFDDLAAEVRRLTDGRGVHAVYDGIGAATF 217676
Score = 84.3 bits (207), Expect = 1e-14, Method: Composition-based stats.
Identities = 66/166 (39%), Positives = 90/166 (54%), Gaps = 1/166 (0%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V VG V+ +G+RV Y G G+Y+ V+ A +L+ +PD + AA
Sbjct: 3085781 GVEAAGIVTAVGGNVAGLAVGERVTYTGSP--LGAYSTERVMPADSLIRLPDAIGFDTAA 3085954
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A+ +GLT+ YL+ + G T ++HAAAGG GL+VCQ AKL G VIG EKA
Sbjct: 3085955 AMTMRGLTSAYLMRRIHAWQAGDTFLLHAAAGGVGLIVCQWAKLLGLNVIGTVSSDEKAD 3086134
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPK-GVDAVYDGVGQATFA 165
+A + G V++ D VR GV V D VG++TFA
Sbjct: 3086135 IARAHGCDHVIVH--RREDVAKRVRELTNGVGVAVVIDSVGKSTFA 3086266
Score = 66.2 bits (160), Expect = 3e-09, Method: Composition-based stats.
Identities = 39/95 (41%), Positives = 53/95 (55%)
Frame = -1
Query: 66 GLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSV 125
GLTA+Y + P PG T+VV AAAG G + Q+ K+ G RV+GI GGA+K T
Sbjct: 2517442 GLTAYYGLTEIAPVQPGETLVVSAAAGSVGSVAGQIGKIHGTRVVGIAGGADKCRYLTDE 2517263
Query: 126 GRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
D +DY + DW ++ A P GV ++ VG
Sbjct: 2517262 LGFDAAVDY-KSDDWKRALKDATPDGVHVSFENVG 2517161
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 37/65 (56%)
Frame = -3
Query: 100 QMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGV 159
Q+AKL+G RV+GI GGA+K D +D+ PD+ + AA P G+D ++ V
Sbjct: 1704929 QIAKLKGCRVVGIAGGADKCRYVAGTLGFDACVDH-HDPDFAKQLAAACPDGIDVYFENV 1704753
Query: 160 GQATF 164
G A F
Sbjct: 1704752 GGAVF 1704738
Score = 41.6 bits (96), Expect = 0.085, Method: Composition-based stats.
Identities = 39/119 (32%), Positives = 59/119 (49%)
Frame = +2
Query: 14 GVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLV 73
GV G+RV +FG G+ A T+V A+ + +PD + DA AAA+ G+++ +
Sbjct: 940808 GVGRLDDGRRVYFFGPPAPFGALAERTLVPAAQCIPLPDSIDDATAAAIAIPGMSSWAAL 940987
Query: 74 DSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVI 132
G TV+V+ A G +G L ++AK GA + G A+ A S AD I
Sbjct: 940988 TERARLAAGETVLVNGATGASGRLAVRIAKHLGAASVIATGRNAHALDALSSAGADATI 941164
Score = 38.1 bits (87), Expect = 0.89, Method: Composition-based stats.
Identities = 41/156 (26%), Positives = 60/156 (38%), Gaps = 25/156 (16%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAY-------------------------FGGVGCTGS 35
G EG G V VG GV G RV G GS
Sbjct: 2631914 GHEGVGFVAAVGEGVRHVKEGDRVGVPWLYTACGHCEYCQTGWETLCHEQQNTGYSVYGS 2631735
Query: 36 YAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTG 95
YA + + + + +P V + A +LC G+T + + + PG + + + GG G
Sbjct: 2631734 YAEYVLADPNYVGHLPSNVAFDEIAPILCAGVTVYKGIRVT-DTRPGQWIAI-SGIGGLG 2631561
Query: 96 LLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVV 131
+ Q AK G V+ + +K LA +G A VV
Sbjct: 2631560 HVAVQYAKAMGLHVVAVDVAPQKLELARKLGAAFVV 2631453
>gb|CP001052.1| Burkholderia phytofirmans PsJN chromosome 1, complete sequence
Length = 4467537
Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats.
Identities = 76/164 (46%), Positives = 100/164 (60%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V +GPGV+ +G R+AY G G+YA V+QA+ +++VPD ++D QAA
Sbjct: 1462721 GMEAAGEVTALGPGVTGLKVGDRIAYVGRP--PGAYAQERVLQAAQVVKVPDALSDEQAA 1462894
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+V+ QGLTAHYL+ +YP G T+++ AAAGG GLLVCQ AK GA VIG G EKA
Sbjct: 1462895 SVMLQGLTAHYLLRRTYPVKAGDTILIQAAAGGVGLLVCQWAKALGATVIGTVGSDEKAE 1463074
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
+AT+ G D I Y + GV VYD +G+ TF
Sbjct: 1463075 IATAHG-CDHAIVYTRENFTKRVREITNGAGVPVVYDSIGKDTF 1463203
Score = 62.8 bits (151), Expect = 4e-08, Method: Composition-based stats.
Identities = 41/99 (41%), Positives = 54/99 (54%)
Frame = +3
Query: 66 GLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSV 125
G+TA Y ++ G TVVV AA+G G +V Q+AKL GAR +GI GGA+K T
Sbjct: 2177154 GVTAWYGLNRIIVPKAGETVVVSAASGAVGSVVGQLAKLAGARAVGIAGGADKCRYVTET 2177333
Query: 126 GRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
D +DY A + L +A P GVD ++ VG A
Sbjct: 2177334 LGFDACVDYKAGNLYQDL-KAVTPNGVDGYFENVGGAVL 2177447
Score = 48.9 bits (115), Expect = 5e-04, Method: Composition-based stats.
Identities = 31/82 (37%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Frame = +3
Query: 81 PGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDW 140
PG T+VV AAG G LV Q K G +V+GI GG +K + D +DY
Sbjct: 2679282 PGDTLVVSGAAGAVGSLVAQFGKKAGCKVVGIAGGPDKCRFLLDELKLDRAVDYREHKTH 2679461
Query: 141 PPLVRA--AAPKGVDAVYDGVG 160
L A GVD +D VG
Sbjct: 2679462 KDLTSTLIEATGGVDVYFDNVG 2679527
Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats.
Identities = 57/162 (35%), Positives = 78/162 (48%), Gaps = 2/162 (1%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V VG V++ G RV F G G +A + A+A + + + + AA
Sbjct: 2058665 GSEVAGVVRAVGADVTQFKPGSRVVAFTG---QGGFAEQALAPATACVPLAEDIDFELAA 2058495
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A T+H+ V G T++V AAGG GL ++ K GARVI EK
Sbjct: 2058494 AFTLAYGTSHHAVVDRGALQAGETMLVLGAAGGVGLAAVEIGKALGARVIAAASSDEK-- 2058321
Query: 121 LATSVGR-ADVVIDYVATPDWPPLVRAAAP-KGVDAVYDGVG 160
LAT V AD I+Y +T D ++A KG D +YD +G
Sbjct: 2058320 LATCVKHGADATINY-STEDLRERIKALTDGKGPDVIYDPIG 2058198
Score = 44.3 bits (103), Expect = 0.013, Method: Composition-based stats.
Identities = 34/101 (33%), Positives = 48/101 (47%)
Frame = +3
Query: 34 GSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGG 93
G++A V + L P +T +AA++ GLTA + G V++HA +GG
Sbjct: 2318220 GAFADLIAVNEADLSIKPKTLTMEEAASIPLVGLTAWQALIEKAHLAKGQRVLIHAGSGG 2318399
Query: 94 TGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDY 134
G Q+AK GA V A + +G ADVVIDY
Sbjct: 2318400 VGTFAIQLAKHVGAFVATTTSTANVDWV-KRLG-ADVVIDY 2318516
Score = 39.3 bits (90), Expect = 0.38, Method: Composition-based stats.
Identities = 48/161 (29%), Positives = 72/161 (44%), Gaps = 6/161 (3%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G + AGTV VGP V+ +G V Y G + G+ + F +V + P + AA
Sbjct: 2090199 GWDAAGTVAAVGPDVTLFKVGDPVFYAGSITRPGANSEFHLVDERIVGHKPASLDFTHAA 2090378
Query: 61 AVLCQGLTAHYLVDSSYPCGP-----GSTVVVHAAAGGTGLLVCQMAK-LRGARVIGICG 114
A+ +TA + P G +V++ AGG G + Q+AK L +VI
Sbjct: 2090379 ALPLTAITAWEALFDRLGVSPQGADEGRSVLIFGGAGGVGSIGIQLAKQLARLKVIATAS 2090558
Query: 115 GAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAV 155
E A AT +G AD ++D+ D P ++ VD V
Sbjct: 2090559 RPESAKWATELG-ADHIVDHFG--DVPAQLKQLGIDQVDYV 2090672
>gb|CP000474.1| Arthrobacter aurescens TC1, complete genome
Length = 4597686
Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats.
Identities = 80/164 (48%), Positives = 102/164 (62%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AGTV VG GV E +G R+A G + +YA + +V+AS L VPDGV D AA
Sbjct: 1777913 GAEAAGTVEAVGEGVEEFSVGDRIATAEG---SRTYAEYALVEASKALPVPDGVDDHTAA 1777743
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A+ QG+TAHYL++SS+ PG TV++HA AGG GLL+ Q+ K RGARVI EKA
Sbjct: 1777742 ALPLQGITAHYLMNSSFRVEPGHTVLLHAGAGGVGLLLTQLLKARGARVITTVSSDEKAD 1777563
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
L+T G AD V+ Y D + +GV+ VYDGVG+ TF
Sbjct: 1777562 LSTLAG-ADEVLRYEGFAD--RVRELTDGEGVNVVYDGVGKDTF 1777440
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 54/162 (33%), Positives = 76/162 (46%), Gaps = 2/162 (1%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSE--TMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQ 58
G E +G + GPGV++ ++ K VA G G YA V A +L +PDGV
Sbjct: 891335 GLEVSGRIAAFGPGVTKAFSVGDKVVALLSG----GGYAQQVAVPAEQVLRIPDGVDLIT 891502
Query: 59 AAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEK 118
AA++ T + + + PG TV++H A GG G + Q+AK GA+V G EK
Sbjct: 891503 AASLPEVAATVYSNLIMTAQLQPGETVLIHGATGGIGTMAIQLAKAYGAKVATTAGTDEK 891682
Query: 119 AMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
A + AD+ I+Y L KG D + D VG
Sbjct: 891683 VGTAKAFLGADIAINYTEEDFAESLKAHNGGKGADVILDVVG 891808
Score = 54.7 bits (130), Expect = 9e-06, Method: Composition-based stats.
Identities = 44/134 (32%), Positives = 62/134 (46%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G + AGTVV++G V G V G G++A V L P ++ +A
Sbjct: 1222442 GHDVAGTVVQIGEKVRSFKPGDEVFARPGNDSIGTFAERVAVAEEDLAIKPATISMEEAG 1222621
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
++ LTA + GPG V++HA AGG G + Q+AK GA V +
Sbjct: 1222622 SLPLVALTAWQALVERGSVGPGQKVLIHAGAGGVGSIAIQLAKYLGATVATTVSAGNRGF 1222801
Query: 121 LATSVGRADVVIDY 134
+ +G ADVVIDY
Sbjct: 1222802 V-RELG-ADVVIDY 1222837
Score = 42.4 bits (98), Expect = 0.053, Method: Composition-based stats.
Identities = 37/131 (28%), Positives = 59/131 (45%), Gaps = 24/131 (18%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGC------------------------TGSY 36
G EGAGTVV++GPGV+ +G +VA + C G +
Sbjct: 2084836 GHEGAGTVVEIGPGVTGLKVGDQVALESHLTCGQCFPCRTGDAHTCERTGILGMHIDGVF 2084657
Query: 37 AAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGL 96
A + V +++P G++ A + G+ H + ++Y G V+V + AG GL
Sbjct: 2084656 AEYAAVPQDICVKLPTGLSLESGALLEAAGVAVHAIQRANYSVA-GRAVLV-SGAGPVGL 2084483
Query: 97 LVCQMAKLRGA 107
+V +A L GA
Sbjct: 2084482 VVVNLALLMGA 2084450
Score = 41.2 bits (95), Expect = 0.12, Method: Composition-based stats.
Identities = 44/151 (29%), Positives = 60/151 (39%), Gaps = 25/151 (16%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAY-------------------------FGGVGCTGS 35
G E G V VGPGV +G R+ G G
Sbjct: 351741 GHEVVGRVKAVGPGVDNFAVGDRIGVQPIWSTCGRCGHCIGGYEQRCRQRQITGETRDGG 351562
Query: 36 YAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTG 95
YA + A+ ++PD ++D +AA + C G+TA+ V + P PG V V G
Sbjct: 351561 YAEVMLANAAFACKIPDSLSDTEAAPLFCPGITAYGAVKKAQP-RPGQNVAVFGVGGVGH 351385
Query: 96 LLVCQMAKLRGARVIGICGGAEKAMLATSVG 126
L + QMA L GA V + A LA +G
Sbjct: 351384 LAL-QMAGLTGAHVNAVSRSASARALAEQLG 351295
Score = 38.1 bits (87), Expect = 0.95, Method: Composition-based stats.
Identities = 39/151 (25%), Positives = 58/151 (38%), Gaps = 25/151 (16%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYF-------------------------GGVGCTGS 35
G EG G VV +G GV++ +G V GG GS
Sbjct: 3342780 GHEGVGEVVALGEGVTDVAVGDLVGNAWLWSTCGDCQYCRTGWETLCESQQNGGYSVDGS 3342601
Query: 36 YAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTG 95
+ + +V +P+G + A VLC G+T + + + PG V + + GG G
Sbjct: 3342600 FGEYMLVDTRFAARIPEGSDPVEVAPVLCAGVTVYKGLKMT-EARPGQWVTI-SGIGGLG 3342427
Query: 96 LLVCQMAKLRGARVIGICGGAEKAMLATSVG 126
+ Q A G RV + +K LA G
Sbjct: 3342426 HIAVQYAVAMGLRVAAVDIADDKLALAKEHG 3342334
Score = 36.2 bits (82), Expect = 3.5, Method: Composition-based stats.
Identities = 40/146 (27%), Positives = 57/146 (39%), Gaps = 37/146 (25%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCT--------------------------- 33
G E AG V +VG V++ +G RV GVGC
Sbjct: 2241343 GHEIAGIVTEVGSDVTKHKVGDRV----GVGCMVNSCKECKNCLAGEEQYCLKGNVGTYG 2241510
Query: 34 ----------GSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGS 83
G Y++ VV ++ +P+G+ AA +LC G+T Y + GPG
Sbjct: 2241511 SVDRDGTITQGGYSSHVVVNEDFVVTIPEGLDLDVAAPLLCAGITT-YSPLHHWGAGPGK 2241687
Query: 84 TVVVHAAAGGTGLLVCQMAKLRGARV 109
V V GG G + ++A GA V
Sbjct: 2241688 KVAV-VGLGGLGHMAVKIAHAMGAEV 2241762
>gb|CP000473.1| Solibacter usitatus Ellin6076, complete genome
Length = 9965640
Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats.
Identities = 77/164 (46%), Positives = 93/164 (56%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AGTV VG GV+E G RVAY GSYA + VV L+++PD V AA
Sbjct: 9321148 GSEAAGTVEAVGAGVTEFKPGDRVAY---AMVRGSYAEYAVVPVGMLVKIPDHVDFVTAA 9321318
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A + QG+TAHYL S+Y G +VHAAAGGTG L+ QMAK+ GARV G +KA
Sbjct: 9321319 AAMLQGMTAHYLTHSTYLLKAGQACLVHAAAGGTGSLIVQMAKMLGARVFGTVSTEDKAR 9321498
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
+A G AD I Y + R +GVD VYD VG+ TF
Sbjct: 9321499 IAREAG-ADETILYTQQEFDVEVKRLTQGRGVDVVYDSVGKTTF 9321627
Score = 64.7 bits (156), Expect = 9e-09, Method: Composition-based stats.
Identities = 54/156 (34%), Positives = 78/156 (50%), Gaps = 1/156 (0%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGS-YAAFTVVQASALLEVPDGVTDAQA 59
G +GAGTV VGP V G RV + G YA + VV+ ++L +P +T QA
Sbjct: 7929223 GSDGAGTVAAVGPQVKRFKKGDRVYGISFLNPKGGFYAEYAVVKENSLALIPGKLTMLQA 7929402
Query: 60 AAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKA 119
AA+ +TA +D++ G ++++ A+GG G L Q AK GARV+ + G +
Sbjct: 7929403 AAMAVDAVTALAGLDTTLGLRNGESLLIFGASGGIGHLAVQFAKRMGARVLAVASGDDGV 7929582
Query: 120 MLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAV 155
+G AD V+D D AP G+DAV
Sbjct: 7929583 SFVRGLG-ADKVVDG-HKEDVLGAASQFAPNGLDAV 7929684
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 43/136 (31%), Positives = 65/136 (47%)
Frame = +3
Query: 29 GVGCTGSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVH 88
G G G V +++++PD ++ AAA LTA +++ S G V+V
Sbjct: 3102894 GYGVDGGNTELLAVSEYSVIQIPDDMSFEDAAAAPLVFLTAWHMLMSRARLQAGEDVLVL 3103073
Query: 89 AAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAA 148
+A+ G G Q+AKL RVI G +K A +G AD VID+ + +
Sbjct: 3103074 SASSGVGTAAIQIAKLFHCRVIATAGNEQKLAKARELG-ADHVIDHYQQDISAEVRKFTG 3103250
Query: 149 PKGVDAVYDGVGQATF 164
+GVD V + VG AT+
Sbjct: 3103251 KRGVDVVVEHVGLATW 3103298
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 61/165 (36%), Positives = 78/165 (47%), Gaps = 1/165 (0%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G EGAG VV GP VS +G RV + GS A AS L+ +P G+T AA
Sbjct: 4085761 GGEGAGVVVAAGPDVS-LPVGARVCW---AAVLGSCATLIAAPASMLVPIPPGLTFDDAA 4085928
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+ LTA L +P G + VV AAG G ++ + RGA VIGI G +
Sbjct: 4085929 CLAVASLTAGGLA-RVWPL-QGRSAVVWGAAGAVGRMLVAILADRGADVIGIASG--NRV 4086096
Query: 121 LATSVGRADVVIDYVATPDWPPLVR-AAAPKGVDAVYDGVGQATF 164
A A+ V+D A D P V +GV AV+D +G TF
Sbjct: 4086097 DAVRAAGANHVVDR-ANSDVPSGVHDYTGGRGVAAVFDPIGAPTF 4086228
Score = 52.0 bits (123), Expect = 6e-05, Method: Composition-based stats.
Identities = 33/79 (41%), Positives = 40/79 (50%)
Frame = -2
Query: 82 GSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWP 141
G + V AAG G + Q+AKLRG RVIG G EK L D +Y A P
Sbjct: 5642936 GDVIFVSGAAGAVGSVAGQLAKLRGCRVIGAAGCDEKVKLLRERFGFDSAFNYKAGPVRA 5642757
Query: 142 PLVRAAAPKGVDAVYDGVG 160
L R AP+G+D +D VG
Sbjct: 5642756 QLER-EAPEGIDVYFDNVG 5642703
Score = 43.5 bits (101), Expect = 0.020, Method: Composition-based stats.
Identities = 39/132 (29%), Positives = 58/132 (43%)
Frame = -2
Query: 34 GSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGG 93
G+ A + +++ P +T +AA+V LTA + G V+VH +G
Sbjct: 5397995 GALAEYCTAPVASVAAKPQRLTHEEAASVPIGALTAWQGLYDRAKLRAGERVLVHGGSGA 5397816
Query: 94 TGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVD 153
G+ Q+A+LRGA VI A ++G A+ +DY TP VD
Sbjct: 5397815 VGVFAIQLARLRGAHVIAT-ASARHLDFVRALG-AEESVDYRGTP---------YKDKVD 5397669
Query: 154 AVYDGVGQATFA 165
V+D VG T A
Sbjct: 5397668 VVFDTVGGETLA 5397633
Score = 43.5 bits (101), Expect = 0.023, Method: Composition-based stats.
Identities = 49/166 (29%), Positives = 71/166 (42%), Gaps = 2/166 (1%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALL--EVPDGVTDAQ 58
G + AGTV +VGPGV+ + G V G +V A L P ++ +
Sbjct: 7010063 GLDMAGTVEEVGPGVTGFLTGDEVYGAVGGVGGLQGTLAELVAADVDLVAHKPKNLSMRE 7009884
Query: 59 AAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEK 118
AAA+ +TA + G V++H AGG G + Q+A+ GA V +K
Sbjct: 7009883 AAALPLGIITAWEGLVDRAGVHAGQKVLIHGGAGGVGHIAVQVARAFGAEVFATVSPEKK 7009704
Query: 119 AMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
+++ G V IDY + + G D VYD VG AT
Sbjct: 7009703 SVVE---GFGAVPIDYRSVQVEEYMAAHTEGNGFDIVYDTVGGATL 7009575
Score = 38.9 bits (89), Expect = 0.62, Method: Composition-based stats.
Identities = 43/151 (28%), Positives = 63/151 (41%), Gaps = 25/151 (16%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKR--VAYFG-----------------------GVGCTGS 35
G EG G V VGP V+E G R V + G G G+
Sbjct: 9940561 GHEGIGRVEAVGPDVTEWSAGDRGGVTFLGTTCGTCEWCRAGRERFCPRQTNFGYTLQGA 9940382
Query: 36 YAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTG 95
+ +V AS+L+ VP+ + AA + C G TA+ + + G +V + GG G
Sbjct: 9940381 LGEYAMVPASSLVRVPEDIAAVDAAPLCCAGWTAYGALREA-GLRAGQSVALF-GYGGLG 9940208
Query: 96 LLVCQMAKLRGARVIGICGGAEKAMLATSVG 126
L Q+A+ +G RV EK +A + G
Sbjct: 9940207 HLALQIARHQGLRVAVADPTEEKIAMARADG 9940115
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence
Length = 4895836
Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats.
Identities = 75/164 (45%), Positives = 97/164 (59%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V +G GVS +G R+AY G+YA V+QA+ +++VPD +TD QAA
Sbjct: 1339733 GMEAAGEVTALGSGVSGLKVGDRIAYVARP--PGAYAQERVLQAAQVVKVPDALTDEQAA 1339906
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+V+ QGLTA YL+ +YP G T+++ AAAGG GLLVCQ AK GA VIG G EKA
Sbjct: 1339907 SVMLQGLTAQYLLRRTYPVKAGDTILIQAAAGGVGLLVCQWAKALGATVIGTVGSDEKAE 1340086
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
+AT+ G D I Y + GV VYD +G+ TF
Sbjct: 1340087 IATAHG-CDHAIVYTRENFTRRVREITNGAGVPVVYDSIGKDTF 1340215
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 41/95 (43%), Positives = 54/95 (56%)
Frame = +2
Query: 66 GLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSV 125
G+TA Y ++ G TVVV AA+G G +V Q+AKL GAR +GI GGA+K T
Sbjct: 2408285 GVTAWYGLNRIIAPKAGETVVVSAASGAVGSVVGQLAKLAGARAVGIAGGADKCRYVTGT 2408464
Query: 126 GRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
D +DY A + L +AA P GVD ++ VG
Sbjct: 2408465 LGFDACVDYKAGNLYQDL-KAATPNGVDGYFENVG 2408566
Score = 52.4 bits (124), Expect = 5e-05, Method: Composition-based stats.
Identities = 59/161 (36%), Positives = 77/161 (47%), Gaps = 1/161 (0%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V VG V++ G RV F G G +A + ASA + + DGV AA
Sbjct: 2306566 GSELAGVVRAVGADVTQFKPGSRVVAFTG---QGGFAEQALAPASACVPLADGVEFELAA 2306396
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A T+H+ V G T++V AAGG GL ++ K GARVI EK
Sbjct: 2306395 AFTLAYGTSHHAVVDRGALQAGETMLVLGAAGGVGLAAVEIGKALGARVIAAASNDEKLA 2306216
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAP-KGVDAVYDGVG 160
+ G AD I+Y +T D ++A KG D +YD VG
Sbjct: 2306215 ICVKHG-ADATINY-STEDLRERIKALTDGKGPDVIYDPVG 2306099
Score = 36.6 bits (83), Expect = 2.5, Method: Composition-based stats.
Identities = 38/151 (25%), Positives = 57/151 (37%), Gaps = 25/151 (16%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAY-------------------------FGGVGCTGS 35
G EG G V VG GV G RV G G+
Sbjct: 2853053 GHEGVGYVAAVGEGVKHVKEGDRVGVPWLYTACGHCEHCLGGWETLCQEQQNTGYSVNGA 2853232
Query: 36 YAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTG 95
YA + V + + +P V+ A +LC G+T + + + PG + + + GG G
Sbjct: 2853233 YAEYVVADPNFVGHLPAAVSFEDIAPILCAGVTVYKGIRMT-DARPGQWITI-SGIGGLG 2853406
Query: 96 LLVCQMAKLRGARVIGICGGAEKAMLATSVG 126
+ Q A G RV+ + +K LA +G
Sbjct: 2853407 HVAVQYAIAMGLRVVAVDISEDKLALARELG 2853499
Score = 35.8 bits (81), Expect = 4.3, Method: Composition-based stats.
Identities = 48/161 (29%), Positives = 71/161 (44%), Gaps = 6/161 (3%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G + AGTV VGP V+ +G V Y G + G+ + F +V + P + AA
Sbjct: 2339316 GWDVAGTVAAVGPEVTLFKVGDPVFYAGSITRPGANSEFHLVDERIVGRKPASLDFTHAA 2339495
Query: 61 AVLCQGLTAHYLVDSSYPCGP-----GSTVVVHAAAGGTGLLVCQMAK-LRGARVIGICG 114
A+ +TA + P G TV++ AGG G + Q+AK L +VI
Sbjct: 2339496 ALPLTAITAWEALFDRLGVSPQGADEGRTVLIIGGAGGVGSIGIQLAKQLAKLKVIATAS 2339675
Query: 115 GAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAV 155
A AT +G AD ++D+ D P ++ VD V
Sbjct: 2339676 RPASAKWATELG-ADHIVDHFG--DMPAQLKKLGIDEVDYV 2339789
>emb|AM236080.1| Rhizobium leguminosarum bv. viciae chromosome complete genome, strain 3841
Length = 5057142
Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats.
Identities = 72/164 (43%), Positives = 99/164 (60%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G+EGAGTV VGPGV + +G RVAY G G+Y+A V+ L+ VPDG+ AA
Sbjct: 2492265 GKEGAGTVTSVGPGVEDFKVGDRVAY---AGADGAYSAGRNVETRHLVHVPDGIELETAA 2492435
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A++ +G+TA YL++ ++ GP + ++ HAAAGG GL+ Q AK GA VIG G +K
Sbjct: 2492436 AMMLKGMTAEYLLNRTFKVGPQTVLLFHAAAGGVGLIAGQWAKALGATVIGTAGSEDKIE 2492615
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
LA + G D VI+Y + + KGVD VYD +G+ TF
Sbjct: 2492616 LALAHGY-DHVINYKSDSFVDRVRDITGGKGVDVVYDSIGRDTF 2492744
Score = 84.7 bits (208), Expect = 8e-15, Method: Composition-based stats.
Identities = 66/164 (40%), Positives = 89/164 (54%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V VGPGVS G RVAY G G+Y + + A +++PD V+ AA
Sbjct: 1323437 GAEAAGIVEDVGPGVSLFQKGDRVAYGGPP--VGAYRSTRNIAAERAIKLPDAVSAKTAA 1323264
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+ L +G+TA+ L+ +Y G+ V++HAAAGG G ++ + A+ A VIG G AEKA
Sbjct: 1323263 SSLLKGMTAYMLLKKTYNVRAGTQVLIHAAAGGLGSILVRWARSLDATVIGTVGSAEKAE 1323084
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
LA S G AD +I + R GVD YDG+G T
Sbjct: 1323083 LAASYG-ADHLIVGRGADIVADVKRLTNGLGVDVAYDGIGGDTL 1322955
Score = 77.4 bits (189), Expect = 1e-12, Method: Composition-based stats.
Identities = 66/166 (39%), Positives = 91/166 (54%), Gaps = 4/166 (2%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVA--YFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQ 58
G E AGT+ + GPG +++G RVA F +G YA F V + ++++PD V+
Sbjct: 3684490 GVEVAGTIERAGPGADRSLIGMRVAVPLFAIGRGSGGYAEFVAVDSGPVMQLPDAVSFEA 3684311
Query: 59 AAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGAR-VIGICGGAE 117
AA ++ QGLTA +L+ S G V+V AAAGG G L+ Q+A+ GA+ VI E
Sbjct: 3684310 AAGLMVQGLTALHLLRRS--PAKGKNVLVSAAAGGVGSLLVQLARRDGAKMVIAAASSNE 3684137
Query: 118 KAMLATSVGRADVVIDYVATPDWPPLV-RAAAPKGVDAVYDGVGQA 162
K L+ S+G AD DY A P W V R G D +Y+ VG A
Sbjct: 3684136 KRALSLSLG-ADHAADYTA-PGWQGHVKRLTGGLGADIIYETVGGA 3684005
Score = 62.0 bits (149), Expect = 7e-08, Method: Composition-based stats.
Identities = 50/164 (30%), Positives = 77/164 (46%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E +G +V VGPGV +G +V G+ G+YA + ++ A +L +P +AA
Sbjct: 1340681 GLELSGKIVAVGPGVRGHAVGDKVC---GLANGGAYAEYCLLPAGQILPIPKAYDAVKAA 1340851
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A+ T + G TV++H + G G Q+A+ GA V G EK
Sbjct: 1340852 ALPETFFTVWANLFQMAGLTEGETVLIHGGSSGIGTTAIQLARAFGAEVYATAGSKEKCE 1341031
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
+G A I+Y T D+ +++A GVD + D +G A F
Sbjct: 1341032 ACEKLG-AKRAINY-RTEDFAEVIKAETGHGVDIILDMIGAAYF 1341157
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 61/192 (31%), Positives = 85/192 (44%), Gaps = 27/192 (14%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGC-------------------------TGS 35
G E +G V +GPGV+ + G+ VA +G C G
Sbjct: 2974355 GAEASGVVEAIGPGVANVLPGQLVAIYGARTCGLCRPCREGRDNLCEHVSGVHGFHLDGF 2974176
Query: 36 YAAFTVVQASALLEVPDGVTDAQAA-AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGT 94
+ A L+ P GV AA A + G H L D++ PG T++VHA G
Sbjct: 2974175 AQEKVNLPARLLVPAPPGVDAIGAALAPVTFGTVEHMLFDNA-KLEPGETILVHAGGSGI 2973999
Query: 95 GLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRA-AAPKGVD 153
G Q+AK G VI G +K A ++G AD VI+Y T + +VR KGVD
Sbjct: 2973998 GTAAIQLAKKIGCTVITTVGSDDKIEKAKALG-ADHVINY-RTDRFEGVVRKLTKKKGVD 2973825
Query: 154 AVYDGVGQATFA 165
V++ VG+ T+A
Sbjct: 2973824 VVFEHVGKDTWA 2973789
Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 53/165 (32%), Positives = 78/165 (47%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG VV VG V + +G RV G+ G+YA + + + +P+ ++ +AA
Sbjct: 2656502 GLEVAGEVVAVGKSVRDYGVGNRVM---GIVGGGAYAQYARLDSGMAARIPESLSFIEAA 2656672
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A++ +T + TV+VHAAAGG G Q+A+ GA V+ E
Sbjct: 2656673 AIMESFVTGWEALAHLGQVAKAETVLVHAAAGGIGSATVQLARSAGASVLAT-ASDENVE 2656849
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATFA 165
S+G A V DY + ++ A +GVD V D VG A A
Sbjct: 2656850 RVLSLGAA-AVFDYRRSDFEAEVIDFTASRGVDLVIDFVGGAYLA 2656981
Score = 45.8 bits (107), Expect = 0.004, Method: Composition-based stats.
Identities = 51/187 (27%), Positives = 69/187 (36%), Gaps = 26/187 (13%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCT------------------------GSY 36
G E AG +V G GV +G RV GC GS+
Sbjct: 1389534 GHELAGRIVATGRGVMRFKVGDRVTVPFVSGCGHCGECHSGNQQVCPNQFQPGFTHWGSF 1389355
Query: 37 AAFTVVQA--SALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGT 94
A + + + L+ +PD + DA AA++ C+ T+ V PG + VH GG
Sbjct: 1389354 AEYVAIDYADTNLVHLPDTIDDATAASLGCRFATSFRAVADQARTRPGEWISVH-GCGGV 1389178
Query: 95 GLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDA 154
GL +A GA IGI EK A G A ++ D VR G
Sbjct: 1389177 GLSAIMIATALGANAIGIDISEEKLAFARECG-AVATVNASGVADVAEAVREITKGGAHV 1389001
Query: 155 VYDGVGQ 161
D +G
Sbjct: 1389000 SIDALGH 1388980
Score = 45.8 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 55/178 (30%), Positives = 71/178 (39%), Gaps = 22/178 (12%)
Frame = -1
Query: 5 AGTVVKVGPGVSETMLGKRVA------YFGGVGC---------------TGSYAAFTVVQ 43
AG V VGP VS G RV + G G G + +TV+
Sbjct: 3907302 AGVVEAVGPEVSRFKPGDRVISTFSPDWIDGRGLGDARTPPYKTRGGFYPGVLSQYTVLS 3907123
Query: 44 ASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAK 103
PD + AQA+ + C GLTA + + G V+V GG L Q+AK
Sbjct: 3907122 EEWYSRAPDTLDAAQASTLPCAGLTAWFALIERGGLKAGDKVLVQ-GTGGVALFGLQIAK 3906946
Query: 104 LRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDW-PPLVRAAAPKGVDAVYDGVG 160
GA V G AEK A ++G AD I+ DW L + G D V + VG
Sbjct: 3906945 THGAEVFITSGSAEKLERAVALG-ADHAINR-HEGDWVEQLYQLTGGYGADHVLEIVG 3906778
>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome
Length = 4501104
Score = 115 bits (289), Expect = 3e-24, Method: Composition-based stats.
Identities = 78/164 (47%), Positives = 99/164 (60%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G EGAG V VG GV E +G RVAY GG G+YA + A LL++PD ++ A A
Sbjct: 608010 GMEGAGVVEAVGEGVGEVKVGDRVAYAGGP--LGAYAEVRNIPAHRLLKLPDSISFATGA 608183
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A++ QGLTA YL+ +Y PG V++HAAAGG GL+ CQ AK GA VIG G + KA
Sbjct: 608184 AMMLQGLTAAYLLRKTYRVQPGDAVLIHAAAGGVGLIACQWAKALGATVIGTVGSSAKAE 608363
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
LA + G D VI+Y + + A +GV VYDGVG+ TF
Sbjct: 608364 LAKAHG-CDHVINYSSENFTQRVREITAGEGVAVVYDGVGKDTF 608492
>gb|CP001025.1| Burkholderia ambifaria MC40-6 chromosome 1, complete sequence
Length = 3443583
Score = 115 bits (289), Expect = 3e-24, Method: Composition-based stats.
Identities = 76/164 (46%), Positives = 96/164 (58%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V VG GV+ G RVAY G G+YA V+ A L+++PDG++D AA
Sbjct: 2460029 GMEAAGEVTAVGDGVTAFKAGDRVAYVGQP--PGAYAQERVMPAERLVKLPDGISDDDAA 2459856
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+V+ QGLTAHYL+ +YP G T+++HAAAGG GLLVCQ AK GA VIG G EKA
Sbjct: 2459855 SVMLQGLTAHYLLRRTYPVKAGDTILIHAAAGGVGLLVCQWAKALGATVIGTVGSDEKAA 2459676
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
LA + G D I Y + GV VYD +G+ T+
Sbjct: 2459675 LAKAHG-CDHPIVYTRENFTQRVKEITNGAGVPVVYDSIGKDTY 2459547
Score = 97.1 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 64/164 (39%), Positives = 90/164 (54%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V VGP V+ +G+ V Y G + G+Y+ ++ A+ L+ +P G+ AA
Sbjct: 1800139 GVEAAGVVEAVGPDVTNVAVGEHVTYTGFLNTLGAYSTERLIAAAPLVRLPAGIACETAA 1800318
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A+ +GLT+ YL+ + PG T+++HAAAGG GL+V Q AKL G VIG KA
Sbjct: 1800319 AMTMRGLTSAYLLRRIHAFAPGDTILLHAAAGGVGLIVSQWAKLLGLTVIGTVSSEHKAA 1800498
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
+A + G D IDY + GVD V+D VG+ TF
Sbjct: 1800499 VARAHG-CDHTIDYSREDVAKRVRELTGGAGVDVVFDSVGKDTF 1800627
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 37/99 (37%), Positives = 48/99 (48%)
Frame = -2
Query: 66 GLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSV 125
G+TA ++ G TVVV AA+G G +V Q+AK G R +GI GG +K
Sbjct: 2013749 GVTARVGLNRIIAPKAGETVVVSAASGAVGSVVGQLAKRAGCRAVGIAGGPDKCRYVVDT 2013570
Query: 126 GRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
D +DY A L AA P GVD ++ VG A
Sbjct: 2013569 LGFDACVDYKAGRLADDLA-AATPDGVDGCFENVGGAVL 2013456
Score = 48.1 bits (113), Expect = 8e-04, Method: Composition-based stats.
Identities = 56/162 (34%), Positives = 73/162 (45%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG + VG GVS G V F G G +A V + +P G+T Q A
Sbjct: 1393792 GAEFAGVIDAVGDGVSAWRPGDEVVAFTG---HGGFAEQCVADVHQIAALPPGMTFEQGA 1393962
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A++ T+ + + G T++V AAGG GL ++AK GARVI A+K
Sbjct: 1393963 ALVLAYGTSLHALQQRARLQQGETLLVLGAAGGVGLAAIEIAKALGARVIAAASSADKLA 1394142
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQA 162
L G AD IDY + +G D VYD VG A
Sbjct: 1394143 LCRDAG-ADDTIDYATEDLRRRVDELTGGRGADVVYDPVGGA 1394265
Score = 43.1 bits (100), Expect = 0.027, Method: Composition-based stats.
Identities = 41/133 (30%), Positives = 62/133 (46%), Gaps = 6/133 (4%)
Frame = -1
Query: 34 GSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPG-----STVVVH 88
G YA + V L VPDG+TD +AA++ T V G G T++V
Sbjct: 2419422 GGYAEYAVAPLPQCLPVPDGLTDIEAASLPETFFTVWSNVFDRALLGAGEGGEQETLLVQ 2419243
Query: 89 AAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAA 148
+ G G+ Q+A G RV G A+K ++G A+ I+Y T D+ +V++
Sbjct: 2419242 GGSSGIGVTAIQIAHALGFRVFATAGNADKCRACEALG-AERAINY-KTEDFVEVVKSLT 2419069
Query: 149 -PKGVDAVYDGVG 160
+GVD + D V
Sbjct: 2419068 HDRGVDVILDMVA 2419030
>gb|CP001191.1| Rhizobium leguminosarum bv. trifolii WSM2304, complete genome
Length = 4537948
Score = 115 bits (289), Expect = 4e-24, Method: Composition-based stats.
Identities = 73/165 (44%), Positives = 101/165 (61%), Gaps = 1/165 (0%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G+EGAGTV VGPGV + +G RVAY G+Y+A ++ L+ VPDG+ AA
Sbjct: 1750187 GKEGAGTVTAVGPGVVDFKIGDRVAY---ASADGAYSAERNIETRHLVHVPDGIELETAA 1750357
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A++ +G+TA YL++ ++ GP + ++ HAAAGG GL+ Q AK GA VIG G +K
Sbjct: 1750358 AMMLKGMTAEYLLNRTFKVGPETVLLFHAAAGGVGLIAGQWAKALGATVIGTAGSEDKVQ 1750537
Query: 121 LATSVGRADVVIDYVATPDWPPLVRA-AAPKGVDAVYDGVGQATF 164
LA + G D I+Y + D+ VR A KGVD VYD +G+ TF
Sbjct: 1750538 LALAHGY-DHAINY-KSEDFAVRVREITAGKGVDVVYDSIGRDTF 1750666
Score = 64.3 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 46/134 (34%), Positives = 68/134 (50%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G + AGTVV+ GP V +G V G++A F + + L P+ ++ A+AA
Sbjct: 104758 GHDVAGTVVRAGPRVRRLKVGDEVYARPRDHRVGTFAEFIAIDEADLALKPNNLSMAEAA 104937
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
++ GLTA + PG V + A +GG G Q+AK GA ++ A A
Sbjct: 104938 SIPLVGLTAWQALVEVGKVKPGQKVFIQAGSGGVGTFAIQLAKHLGA-MVATTTSAGNAE 105114
Query: 121 LATSVGRADVVIDY 134
LA S+G ADV++DY
Sbjct: 105115 LAKSLG-ADVIVDY 105153
Score = 60.8 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 49/164 (29%), Positives = 79/164 (48%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E +G +V +G GVS +G +V G+ G+YA + ++ A +L P G +AA
Sbjct: 801323 GLELSGEIVAIGLGVSGYRVGDKVC---GLANGGAYAEYCLLPAGQILPFPKGYDAVKAA 801493
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A+ T + G TV++H + G G Q+A+ GA V G +EK
Sbjct: 801494 ALPETFFTVWANLFQMAGLTEGETVLIHGGSSGIGTTAIQLARAFGAEVYATAGSSEKCA 801673
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
+G A I+Y + D+ +++A +GVD + D +G A F
Sbjct: 801674 ACERLG-AKRAINY-KSEDFAEVIKAETGQGVDIILDMIGAAYF 801799
Score = 58.9 bits (141), Expect = 6e-07, Method: Composition-based stats.
Identities = 60/192 (31%), Positives = 85/192 (44%), Gaps = 27/192 (14%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGC-------------------------TGS 35
G E +G V +GPGV+ + G+ V+ +G C G
Sbjct: 2173329 GAEASGVVEAIGPGVANVLPGQLVSIYGARTCGLCRPCREGRDNLCEHVSGVHGFHLDGF 2173150
Query: 36 YAAFTVVQASALLEVPDGVTDAQAA-AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGT 94
+ A L+ P GV AA A + G H L D++ PG T++VHA G
Sbjct: 2173149 AQEKVNLPARLLVPAPPGVDAIGAALAPVTFGTVEHMLFDNA-KLEPGETILVHAGGSGI 2172973
Query: 95 GLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRA-AAPKGVD 153
G Q+AK G VI G +K A ++G AD VI+Y T + +VR KGVD
Sbjct: 2172972 GTAAIQLAKKIGCTVITTVGSDDKIERAKALG-ADHVINY-RTDRFEGVVRKLTKKKGVD 2172799
Query: 154 AVYDGVGQATFA 165
V++ VG+ T+A
Sbjct: 2172798 VVFEHVGKDTWA 2172763
Score = 52.8 bits (125), Expect = 4e-05, Method: Composition-based stats.
Identities = 36/118 (30%), Positives = 60/118 (50%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G + AG V VG GV + +G V +G++A +V+A+ L + P ++ A+AA
Sbjct: 2364758 GTDFAGIVEAVGGGVVDFRVGDEVFGTMDFKRSGAFAEAVLVEAAHLAKKPPQLSFAEAA 2364937
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEK 118
++ +TA + PG+ + ++ +G G L Q+A RGA V G CG A +
Sbjct: 2364938 SLPIAAMTAWVAIIDRAKARPGARIFINGCSGAVGALAIQLAVSRGAHVAGACGPASR 2365111
Score = 42.0 bits (97), Expect = 0.063, Method: Composition-based stats.
Identities = 48/189 (25%), Positives = 73/189 (38%), Gaps = 34/189 (17%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRV----------------AYFGGVGCTGSYAAFTVVQA 44
G + G + VG GV +G+RV + G C G +A + V +
Sbjct: 2978543 GADCCGRIAAVGEGVDPGRIGERVLVRNMLRSYTDYRPFECWTFGSECDGGFAQYAVAPS 2978364
Query: 45 SALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKL 104
+ +D + A++ C TA ++ + G G V++ A+GG G Q+AK
Sbjct: 2978363 RETYRIDCDWSDVELASLPCAYSTAEGMLHRAV-VGAGEHVLIAGASGGVGSAAIQLAKR 2978187
Query: 105 RGARVIGICGGAEKAMLATSVG------------------RADVVIDYVATPDWPPLVRA 146
RGA V I EKA ++G DVV+D A P + L+
Sbjct: 2978186 RGAIVTAI-SSPEKASQLLAIGADRILSRGESIVAGLGHESVDVVLDVAAGPSFGELLDV 2978010
Query: 147 AAPKGVDAV 155
G AV
Sbjct: 2978009 LKKGGRYAV 2977983
>gb|CP001096.1| Rhodopseudomonas palustris TIE-1, complete genome
Length = 5744041
Score = 115 bits (288), Expect = 5e-24, Method: Composition-based stats.
Identities = 74/165 (44%), Positives = 98/165 (59%), Gaps = 1/165 (0%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G EGAG VV VGP V+ G RVAY+ +G YA ++A+ L+++PD +T Q A
Sbjct: 3221982 GNEGAGEVVSVGPHVTNFHPGDRVAYYANLG---GYATERNIEAAKLVKLPDHITYEQGA 3222152
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
++ +GLT YL+ ++ PG V++HAAAGG GLL CQ A+ GA VIG G KA
Sbjct: 3222153 VLMLKGLTVWYLLHKTFKVEPGHRVLIHAAAGGIGLLACQWARALGAHVIGTVGSKPKAD 3222332
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGV-DAVYDGVGQATF 164
LA + G D VI Y DW V+ + + D VYDGVG+ATF
Sbjct: 3222333 LALANG-CDHVILY-NEEDWVARVKQISRNELCDVVYDGVGKATF 3222461
Score = 59.7 bits (143), Expect = 3e-07, Method: Composition-based stats.
Identities = 43/96 (44%), Positives = 57/96 (59%), Gaps = 1/96 (1%)
Frame = +3
Query: 66 GLTAHY-LVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATS 124
GLTA++ L+D P G TVVV AAAG G +V Q+AK++G RV+GI GG +K +
Sbjct: 515238 GLTAYFGLLDIGKP-RAGETVVVSAAAGSVGSIVGQIAKIKGCRVVGIAGGKQKCDWLVN 515414
Query: 125 VGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
D +DY + L RAAAP G+D +D VG
Sbjct: 515415 ELGFDAAVDYKDGALFKAL-RAAAPNGIDVYFDNVG 515519
Score = 58.5 bits (140), Expect = 7e-07, Method: Composition-based stats.
Identities = 56/161 (34%), Positives = 79/161 (49%), Gaps = 1/161 (0%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG + VG V+ G+ V G+ +G+ A + VV A A+ +PDGV+ + A
Sbjct: 3637259 GTEFAGVIDAVGDRVANYAAGQTVM---GMSRSGALAEYIVVPAEAVAPLPDGVSPEEGA 3637429
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+ LTA+Y + ++V AAGG G Q+ KL GARVI A+K
Sbjct: 3637430 SFRANYLTAYYALAERARLQRDEILLVLGAAGGVGTAAIQIGKLLGARVIAGASTAQKRD 3637609
Query: 121 LATSVGRADVVIDYVATPDWPPLVRA-AAPKGVDAVYDGVG 160
A +G AD VIDY PDW + G D ++D +G
Sbjct: 3637610 FALKLG-ADAVIDY-TQPDWRDTFKTLTGEHGADVIFDPIG 3637726
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 55/189 (29%), Positives = 76/189 (40%), Gaps = 25/189 (13%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGC----------------TGSYAAFTV--- 41
G E +GT+ VG GV+ G++V +G + C G F V
Sbjct: 2419915 GAEASGTIEAVGDGVTTFKPGQKVVMYGALTCGHCKACQEGRDNLCENVGGLIGFHVDGF 2419736
Query: 42 ------VQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTG 95
+ A ++ VPD V AA T +++ + PG TV+VHA G G
Sbjct: 2419735 ARELMNIAARLVIPVPDAVDLRDAACAPIAFSTVQHMLFDNAKLQPGETVLVHAGGSGIG 2419556
Query: 96 LLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAV 155
+ MAK G VI G K +G AD VI+Y + KGVD V
Sbjct: 2419555 TVAIMMAKAIGCTVITTVGDDSKIEGVKKLG-ADHVINYRQDRFEHECRKITKKKGVDVV 2419379
Query: 156 YDGVGQATF 164
++ VG TF
Sbjct: 2419378 FEHVGADTF 2419352
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 54/161 (33%), Positives = 79/161 (49%), Gaps = 1/161 (0%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVT-DAQA 59
G E AG + VG GV++ +G RV G G+ + A ++++PD + D A
Sbjct: 432472 GAEVAGVIESVGEGVTDLKVGDRVV--ASCGHNGAREKIAL-PAQMIVKIPDNLDFDRAA 432642
Query: 60 AAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKA 119
++ G H L D + P PG T+ V AAGGTGL C++ KL G +VI EK
Sbjct: 432643 GIIIIYGTALHALEDRASP-KPGETLAVLGAAGGTGLAACELGKLMGLKVIACASSDEKL 432819
Query: 120 MLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
A G A++ ++Y L + KGVD ++D VG
Sbjct: 432820 AFAKQHG-AELTLNYATEDLKEGLKKLTGGKGVDIIFDPVG 432939
Score = 55.8 bits (133), Expect = 5e-06, Method: Composition-based stats.
Identities = 48/160 (30%), Positives = 73/160 (45%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG VV +G G S LG +V + G YA + + Q S ++VP + +A
Sbjct: 1051855 GLEIAGEVVALGDGASRHKLGDKVM---SLVAGGGYAEYCIAQDSQAMKVPAAYSMIEAG 1051685
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A +T + + PG T++VH + G G + Q+A G++VI G +KA
Sbjct: 1051684 ATPETLMTVWHNLFERGGLQPGETLLVHGGSSGIGTMAIQLAVALGSKVITTVGSQDKAD 1051505
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
+G A I+Y + A KGV+ + D VG
Sbjct: 1051504 ACLKLG-ASRAINYKTEDFVAAVKEATGGKGVEVILDMVG 1051388
Score = 52.8 bits (125), Expect = 4e-05, Method: Composition-based stats.
Identities = 50/167 (29%), Positives = 78/167 (46%), Gaps = 2/167 (1%)
Frame = -2
Query: 1 GEEGAGTVVKVGPG-VSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQA 59
G EGAGTV+K G ++ +LGK VA GG YA + +++A+ L++ DG T A+
Sbjct: 3462957 GNEGAGTVIKAGSSDAAQALLGKTVAMIGG----AMYAQYRLIKAADCLKLADGTTAAEG 3462790
Query: 60 AAVLCQGLTAHYLVDSSYPCGPGSTVVVH-AAAGGTGLLVCQMAKLRGARVIGICGGAEK 118
A+ LTA + ++ G +VH AAA G ++ ++ G ++ I +
Sbjct: 3462789 ASCFVNPLTALGMTETMKR--EGHKALVHTAAASNLGQMLNRICLKDGIDLVNIVRSEAQ 3462616
Query: 119 AMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATFA 165
A L +G A V+D A L A G +D +G A
Sbjct: 3462615 AKLLREIG-AKYVVDSTAPTFLDDLTEALVKTGATIAFDAIGGGRLA 3462478
Score = 48.9 bits (115), Expect = 6e-04, Method: Composition-based stats.
Identities = 51/159 (32%), Positives = 74/159 (46%), Gaps = 2/159 (1%)
Frame = -1
Query: 3 EGAGTVVKVGPGVSETMLGKRVAYFGGVGCT-GSYAAFTVVQASALLEVPDGVTDAQAAA 61
E AG V +G +G RV +G T G++ +T+ LL +PDG++ +AA
Sbjct: 2329030 EFAGEVEALGDEAYGCKIGDRV-----MGSTAGAFGEYTLADHGRLLPIPDGLSFEEAAT 2328866
Query: 62 VLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGAR-VIGICGGAEKAM 120
+ T H V + G +V+V A+ G GL+ Q+AKL+GAR VIG +
Sbjct: 2328865 LPVALTTMHNAVVAIGKLRSGQSVLVQGASSGVGLMAMQIAKLKGARKVIGSSTDKGRRD 2328686
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGV 159
G AD+ ID ++ A GVD V D V
Sbjct: 2328685 TLHQFG-ADLAIDSSGDGWVDQVLAATGGAGVDLVIDQV 2328572
Score = 42.7 bits (99), Expect = 0.044, Method: Composition-based stats.
Identities = 41/136 (30%), Positives = 63/136 (46%)
Frame = +3
Query: 29 GVGCTGSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVH 88
G+ G++A+ VV+A AL+E P V+ +AA + +TA + + G T+V+
Sbjct: 2076072 GIRRDGTHASHLVVEADALVEKPASVSWEEAAGIGVPFVTATEGLRRAV-LAAGETLVIM 2076248
Query: 89 AAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAA 148
G G Q+A RGA+VIG+ AE A +ID +T +
Sbjct: 2076249 GINGKVGQAAAQIATWRGAKVIGVVRKAEP--YAGHASAPVEIIDSSSTDVAAKVRELTG 2076422
Query: 149 PKGVDAVYDGVGQATF 164
KG D V++ VG F
Sbjct: 2076423 GKGADVVFNTVGDPYF 2076470
Score = 42.0 bits (97), Expect = 0.063, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 35/65 (53%)
Frame = +1
Query: 100 QMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGV 159
Q+AK++GAR IGI GG +K D +D+ PD ++AA P G+D ++ V
Sbjct: 2693737 QIAKVKGARAIGIAGGKDKCDYVKQELGFDDCLDH-RDPDLAAKLKAACPNGIDVYFENV 2693913
Query: 160 GQATF 164
G F
Sbjct: 2693914 GGEVF 2693928
Score = 41.2 bits (95), Expect = 0.12, Method: Composition-based stats.
Identities = 53/189 (28%), Positives = 84/189 (44%), Gaps = 24/189 (12%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGC------------------------TGSY 36
G +GAG + + + ++G+RV + G+ C G+
Sbjct: 758189 GVDGAGVIEEAD---TPELIGRRVTLYPGIVCGNCEFCRRGEPVLCAKMSLLGEHRDGTM 758359
Query: 37 AAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGL 96
A + V A L +PD + AQAAA+ LTA ++ + PG TV+V GG L
Sbjct: 758360 AEYVCVPADNALPIPDQLDFAQAAALGVNYLTAWRMLFTKAKLQPGETVLVFGVGGGVSL 758539
Query: 97 LVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVY 156
Q+A GARV+ A+K A ++G AD VID A ++ + +G D V
Sbjct: 758540 AAMQIAAAAGARVLATSRSADKLARARALG-ADAVIDAPADKIPAAVMDLTSGRGADVVI 758716
Query: 157 DGVGQATFA 165
+ +G A ++
Sbjct: 758717 ENIGGAMWS 758743
Score = 38.1 bits (87), Expect = 1.1, Method: Composition-based stats.
Identities = 56/164 (34%), Positives = 73/164 (44%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG ++++G V+ LG RV G+YA V AS L P A+AA
Sbjct: 2673966 GMEAAGEIIELGADVTSVKLGDRVIVKLRF---GAYAEEVVAAASQLTPAPANFDFAEAA 2674136
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
L TA + + PG ++VH A GG GL ++ K GA VI EK
Sbjct: 2674137 TYLAGHGTAWHGLVERGQLQPGEVLLVHGAGGGVGLAAVEVGKYLGATVIAAASSEEKLA 2674316
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
+A G AD I Y A P + R +G D V+D VG F
Sbjct: 2674317 VARQRG-ADHGILYGAEPFKDAVKRITEGRGADVVFDPVGGQIF 2674445
Score = 37.7 bits (86), Expect = 1.1, Method: Composition-based stats.
Identities = 36/125 (28%), Positives = 56/125 (44%), Gaps = 3/125 (2%)
Frame = +2
Query: 34 GSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTA--HYLVDSSYPCGPGS-TVVVHAA 90
G+YA V+ L+ +P+G+T QA A+ G TA L ++ P V+V A
Sbjct: 5526542 GAYAEKARVKGDWLVRLPEGMTARQAMAIGTAGYTAMLSVLALENHGLKPADGPVIVTGA 5526721
Query: 91 AGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPK 150
AGG G + + G VI G + S+G A+++ + PL +
Sbjct: 5526722 AGGVGSVAIALLSKLGYHVIASTGRMSEESYLKSLGAAEIIDRNELSGPAKPLAKERWVG 5526901
Query: 151 GVDAV 155
GVD+V
Sbjct: 5526902 GVDSV 5526916
>emb|BX572601.1| Rhodopseudomonas palustris CGA009 complete genome; segment 9/16
Length = 348580
Score = 115 bits (288), Expect = 5e-24, Method: Composition-based stats.
Identities = 74/165 (44%), Positives = 98/165 (59%), Gaps = 1/165 (0%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G EGAG VV VGP V+ G RVAY+ +G YA ++A+ L+++PD +T Q A
Sbjct: 256213 GNEGAGEVVSVGPHVTNFHPGDRVAYYANLG---GYATERNIEAAKLVKLPDHITYEQGA 256383
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
++ +GLT YL+ ++ PG V++HAAAGG GLL CQ A+ GA VIG G KA
Sbjct: 256384 VLMLKGLTVWYLLHKTFKVEPGHRVLIHAAAGGIGLLACQWARALGAHVIGTVGSKAKAD 256563
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGV-DAVYDGVGQATF 164
LA + G D VI Y DW V+ + + D VYDGVG+ATF
Sbjct: 256564 LALANG-CDHVILY-NEEDWVARVKQISRNELCDVVYDGVGKATF 256692
>emb|AM746676.1| Sorangium cellulosum 'So ce 56' complete genome
Length = 13033779
Score = 115 bits (288), Expect = 5e-24, Method: Composition-based stats.
Identities = 84/164 (51%), Positives = 98/164 (59%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G EGAG V VGP V+E G VA+ GG GSYA + A+ L+ VP GV +AA
Sbjct: 4824678 GLEGAGRVEAVGPSVTEVREGDEVAWTGG---PGSYATHVRIPAAKLVPVPAGVGARRAA 4824848
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A + QG+TA YLV S++P GPG T ++HAAAGG GLL+CQMAK GARVIG EKA
Sbjct: 4824849 AAMLQGITAQYLVRSTFPLGPGHTCLIHAAAGGVGLLLCQMAKRLGARVIGTVSTEEKAR 4825028
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
LA + G AD VI Y R GV VYDGVG TF
Sbjct: 4825029 LARNAG-ADEVILYTKADFEAETRRLTGGAGVHVVYDGVGSDTF 4825157
Score = 94.0 bits (232), Expect = 1e-17, Method: Composition-based stats.
Identities = 72/166 (43%), Positives = 92/166 (55%), Gaps = 2/166 (1%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVA--YFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQ 58
G E +G V VG GV+ET G+RVA +FG G+YA +V AS ++ +P V+
Sbjct: 3065139 GFEASGVVAAVGEGVTETRPGERVATLHFG----LGAYAEHQLVPASQVIPLPADVSFES 3065306
Query: 59 AAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEK 118
A A++ QGLTAH L + G ++HAAAGG G L+ Q K RGA VIG EK
Sbjct: 3065307 ATALMLQGLTAHVLTFENPKFAAGQVALIHAAAGGMGRLLTQWLKRRGATVIGTVSTPEK 3065486
Query: 119 AMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
A LA + AD VIDY A +R +G D + DGVG ATF
Sbjct: 3065487 ARLAAAA-GADHVIDYRARDFAEETLRLTHGRGADFIIDGVGSATF 3065621
Score = 79.0 bits (193), Expect = 5e-13, Method: Composition-based stats.
Identities = 58/164 (35%), Positives = 83/164 (50%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E +GTV +G GV++ LG V GV G YA+ V + +P +T +AA
Sbjct: 7050496 GFEFSGTVAALGEGVTDLALGAPVF---GVTRFGGYASRVAVPRHQVFPLPARLTPEEAA 7050326
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+TA+Y + P +++VH+AAGG G + Q+ K+ G RV+G+ G A K
Sbjct: 7050325 GFPAVFMTAYYALFELVRLRPAMSLLVHSAAGGVGSALVQLGKIAGCRVVGVVGAAHKVE 7050146
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
A +G AD VID + P W R AP+G D + D G T
Sbjct: 7050145 AARRLG-ADAVIDKSSEPLWAAAER-LAPEGYDVILDANGVETL 7050020
Score = 60.8 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 59/165 (35%), Positives = 79/165 (47%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G + AGTV VGP V+ G V TG++A + V QA + P ++ QAA
Sbjct: 7941596 GSDLAGTVAAVGPEVTGLAPGAAVFGVTNRRFTGAHADYAVAQACMVTRKPLRFSEVQAA 7941775
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+V +TA + G TV+VH AAG G Q+A+ GARVI ++
Sbjct: 7941776 SVPVIAVTAWQALFDQAQLEAGQTVLVHGAAGSVGAYAVQLARRAGARVIATASAKDRDF 7941955
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATFA 165
+ S+G ADVV+DY + A K VDAV D VG T A
Sbjct: 7941956 V-RSLG-ADVVVDYRSER------FEDAAKDVDAVIDLVGGDTQA 7942066
Score = 52.0 bits (123), Expect = 7e-05, Method: Composition-based stats.
Identities = 45/121 (37%), Positives = 56/121 (46%), Gaps = 6/121 (4%)
Frame = -1
Query: 46 ALLEVPDGVTDAQAAAVLCQ-----GLTAHY-LVDSSYPCGPGSTVVVHAAAGGTGLLVC 99
AL +P D A LC G TA+ L D + P PG T+VV AAG G LV
Sbjct: 11575119 ALTRLP--ALDVPLGAFLCPLHVTGGFTAYVGLFDIAQP-RPGETIVVSGAAGSVGSLVG 11574949
Query: 100 QMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGV 159
QM K+ G RV+GI G T D I+Y T D + A P+GVD ++
Sbjct: 11574948 QMGKIAGCRVVGIAGSDAGCRYVTEELGFDACINY-RTEDVAAALDRACPQGVDIDFENA 11574772
Query: 160 G 160
G
Sbjct: 11574771 G 11574769
Score = 51.6 bits (122), Expect = 8e-05, Method: Composition-based stats.
Identities = 45/132 (34%), Positives = 62/132 (46%)
Frame = -3
Query: 33 TGSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAG 92
+G YA + +PD + AAA+ T ++ + PG TV+VHA AG
Sbjct: 11954596 SGGYATRAIAGPRTTYALPDAMPFEDAAAMTITYQTGYFALHRRAGVQPGDTVLVHAGAG 11954417
Query: 93 GTGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGV 152
G G Q+AK GA VI GG EK + ++G ADV IDY + + +G
Sbjct: 11954416 GVGSAAIQLAKAAGATVIATAGGEEKTAVCRALG-ADVAIDYRREDFVAVVKERTSGRGA 11954240
Query: 153 DAVYDGVGQATF 164
D V+D VG F
Sbjct: 11954239 DIVFDPVGGDVF 11954204
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 51/162 (31%), Positives = 71/162 (43%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V G G G RV G+ G+YA V + VPDG+TD +AA
Sbjct: 12739900 GLEYAGVVEATGKGARRFAPGDRVF---GLLAGGAYAERVVAHEREVAPVPDGLTDEEAA 12739730
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
AV +TA+ + + PG +VHA G G Q+A+ G V+G +K
Sbjct: 12739729 AVPEAFVTAYDALVTRARLAPGERALVHAVGSGVGTAGLQIARALGCFVVGTSRTQDKLD 12739550
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQA 162
+G + AT +++A GVD V + VG A
Sbjct: 12739549 RCRELGLHAGIATSGATFA-GEVLKATGGAGVDVVLELVGGA 12739427
Score = 45.4 bits (106), Expect = 0.006, Method: Composition-based stats.
Identities = 54/162 (33%), Positives = 76/162 (46%), Gaps = 5/162 (3%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G + AG V VG V+ G +V Y G + GS A +V +P + A AA
Sbjct: 187196 GWDAAGIVEAVGADVTVFRPGDKVYYAGSIARPGSNAEVHLVDERLAAPMPRSLGFADAA 187375
Query: 61 AVLCQGLTAHYLVDSSYPCGP-----GSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGG 115
A+ LTA + P GSTV+V AGG G +V Q+AK G RV+
Sbjct: 187376 ALPLTSLTAWEGLFERLGVDPEGRDAGSTVLVLGGAGGVGSMVVQLAKAAGLRVVATASR 187555
Query: 116 AEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYD 157
E A S+G ADV++D+ A P + AA + V+ ++D
Sbjct: 187556 EESRAWARSLG-ADVLVDHRAP--LRPQLEAAGIQHVELIFD 187672
Score = 41.6 bits (96), Expect = 0.087, Method: Composition-based stats.
Identities = 45/146 (30%), Positives = 66/146 (45%)
Frame = -2
Query: 14 GVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLV 73
GV G+RV + GS A ++ S ++ VPD ++D QAAA++ GL + +
Sbjct: 12345017 GVGTDPAGRRVYFLFPKAPFGSMAERSLAMDSMVVPVPDALSDEQAAAIVTAGLASWIAL 12344838
Query: 74 DSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVID 133
G TV+V+ A G G + Q A+ GA + I G +K L GR D +
Sbjct: 12344837 SRRALLRKGDTVLVNGATGAAGGMAIQTARYFGASKV-IAVGRDKVKL----GRLDADVK 12344673
Query: 134 YVATPDWPPLVRAAAPKGVDAVYDGV 159
D +R +GVD V D V
Sbjct: 12344672 IAFDEDADRSLRDHFDRGVDVVLDFV 12344595
Score = 39.7 bits (91), Expect = 0.32, Method: Composition-based stats.
Identities = 44/137 (32%), Positives = 61/137 (44%), Gaps = 3/137 (2%)
Frame = +2
Query: 27 FGGVGCTGSYAAFTVVQAS--ALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGST 84
FGG GS+A + V + +VPDGV D ++A L+ Y+ PG
Sbjct: 7743506 FGGFA--GSHAEYVRVPFADHGAFKVPDGVRD-ESALFASDALSTGYMAAELCDIRPGQV 7743676
Query: 85 VVVHAAAGGTGLLVCQMAKLRGA-RVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPL 143
V V GG G + + A L GA RVI I A++ +A + G AD ++Y L
Sbjct: 7743677 VAVW-GCGGVGQMAIKSAYLLGAERVIAIDRIADRLAMAKAHGGAD-ALNYAEVDVQEAL 7743850
Query: 144 VRAAAPKGVDAVYDGVG 160
+G DA D VG
Sbjct: 7743851 REMTGGRGPDACIDAVG 7743901
Score = 38.1 bits (87), Expect = 0.89, Method: Composition-based stats.
Identities = 45/136 (33%), Positives = 61/136 (44%), Gaps = 2/136 (1%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTG--SYAAFTVVQASALLEVPDGVTDAQ 58
G + AG V VG V+ +G V FG + G +A + AL P V+ +
Sbjct: 2097136 GADIAGRVEAVGKNVTRFRVGDEV--FGDLSAHGWGGFAEYVCTSEQALAPKPSNVSFEE 2096963
Query: 59 AAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEK 118
AAAV L A + G V+V+ A+GG G Q+AK A V G+C
Sbjct: 2096962 AAAVPLAALAALQALRDCGRARAGQRVLVNGASGGVGTFAVQIAKALNAEVTGVC-STRN 2096786
Query: 119 AMLATSVGRADVVIDY 134
L S+G AD V+DY
Sbjct: 2096785 LELVRSLG-ADHVVDY 2096741
Score = 38.1 bits (87), Expect = 0.95, Method: Composition-based stats.
Identities = 37/129 (28%), Positives = 51/129 (39%), Gaps = 2/129 (1%)
Frame = -3
Query: 25 AYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGST 84
A F G G YA V A +PDG D AA +LC GL + + + G
Sbjct: 6881815 ARFTGYQIDGGYAELAVADARFCFPIPDGFPDLSAAPLLCAGLIGYRTLRLA---GDAER 6881645
Query: 85 VVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKA--MLATSVGRADVVIDYVATPDWPP 142
+ ++ G LV Q+A+ G RV G + A A S+G + A P+
Sbjct: 6881644 IGIY-GFGAAAHLVAQVARFEGRRVFGFVRPGDDAARAFALSMGAEWAGASFEAPPEELD 6881468
Query: 143 LVRAAAPKG 151
AP G
Sbjct: 6881467 AALIFAPAG 6881441
>gb|U87282.1|RCU87282 Rhodobacter capsulatus cbbII operon: phosphoglucomutase (pgm) gene,
partial cds, NAD(P)H -dependent quinone oxidoreductase
(qor), LysR-type transcriptional activator CbbRII
(cbbrII), fructose 1,6-bisphosphatase (cbbFII),
phosphoribulokinase (cbbPII) genes, complete cds, and
transketolase (cbbTII) gene, partial cds
Length = 4537
Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats.
Identities = 76/163 (46%), Positives = 96/163 (58%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG + VGPGV + +G+RVAY G+YA+ V+ A L+ +P+G++D AA
Sbjct: 1136 GGEAAGVIEAVGPGV-DLPVGQRVAY---TVRNGAYASHRVIAAEDLVPIPEGISDEIAA 969
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
AV+ +GLT HYL+ SYP G V+VHAAAGG GLL Q K +G R +G G AEK
Sbjct: 968 AVMLKGLTVHYLIHHSYPAAAGDCVLVHAAAGGVGLLAGQWLKHKGVRALGTAGTAEKCA 789
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQAT 163
LA + G D VIDY +R KGV AVYD VG T
Sbjct: 788 LALAHGY-DAVIDYKTRDFVAETMRLTEGKGVKAVYDSVGAVT 663
>emb|AM920436.1| Penicillium chrysogenum Wisconsin 54-1255 complete genome, contig Pc00c21
Length = 5624362
Score = 115 bits (287), Expect = 6e-24, Method: Composition-based stats.
Identities = 75/167 (44%), Positives = 94/167 (56%), Gaps = 3/167 (1%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G EGAG V VGP S +G RVA+ TG YA +T V + ++PDG++D
Sbjct: 1465909 GREGAGIVAAVGPQTSGFQVGDRVAWLS----TGGYAEYTAVPIAQTAKIPDGISDEDIM 1466076
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A GLT +YP G V++HAAAGG G L+ Q+ K GA VIG GGAEK
Sbjct: 1466077 ASFLSGLTVLAFAKEAYPVQKGDWVLLHAAAGGAGFLMTQILKSIGANVIGTAGGAEKCA 1466256
Query: 121 LATSVGRADVVIDYVAT--PDWPPLVR-AAAPKGVDAVYDGVGQATF 164
L S+G ADVVIDY + DW V+ A +GVD VYD VG+ T+
Sbjct: 1466257 LVKSLG-ADVVIDYRSEEDKDWVKKVKEATGGRGVDVVYDSVGKDTW 1466394
Score = 55.8 bits (133), Expect = 4e-06, Method: Composition-based stats.
Identities = 65/177 (36%), Positives = 82/177 (46%), Gaps = 11/177 (6%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETM-LGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQA 59
G E AGTV V + LG RV FG G+YA + LL VP+G + A
Sbjct: 2776048 GAEFAGTVTAVPRSANNRFKLGDRV--FGAT--QGAYATHVLAAEQTLLPVPEGWSFEDA 2775881
Query: 60 AAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKA 119
A + T++ + G V+VHAAAGG GL Q+AK GA VI G K
Sbjct: 2775880 AGLFVTAPTSYGGLVQRAGVKAGDWVLVHAAAGGVGLAAVQIAKAMGATVIATAGTERKR 2775701
Query: 120 MLATSVGRADVVIDYVATPDWPPLVRAAAPK--------GVDAVYDGVG--QATFAC 166
+A G AD VIDY WP +V+ + GVD VYD VG +A+ C
Sbjct: 2775700 EIAKDFG-ADYVIDYTGKA-WPEIVKGICKEKREGNGAAGVDIVYDPVGMIEASLKC 2775536
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 42/127 (33%), Positives = 64/127 (50%), Gaps = 2/127 (1%)
Frame = -2
Query: 36 YAAFTVVQASALLEVPDGVTDAQAAAVL-CQGLTAHYLVDSSYPCGPGSTVVVHAAAGGT 94
YA + +A + VP G A +VL GLTA++ + G TVVV AAG T
Sbjct: 2056833 YAVVSAKEAEKI-TVPAGGRPTDAMSVLGMTGLTAYFGMVEIAQVKKGDTVVVSGAAGAT 2056657
Query: 95 GLLVCQMAKLRGA-RVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVD 153
G++ Q+A+++GA RV+G+ G EK D ++Y DW ++ A P+ +D
Sbjct: 2056656 GMVAGQIARIKGAKRVVGLAGTKEKCDFLVRELGFDSAVNY-KDADWRKQLKLATPEYID 2056480
Query: 154 AVYDGVG 160
+D G
Sbjct: 2056479 VFFDNTG 2056459
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 39/123 (31%), Positives = 60/123 (48%), Gaps = 2/123 (1%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETML--GKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQ 58
G E AG V +GPG E+ L G RV G+G + + T +++ +PD + +
Sbjct: 931691 GHECAGIVRGLGPGSHESGLKVGDRVC---GIG-EDRFGSTTRASWTSVARIPDEMAWEE 931524
Query: 59 AAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEK 118
AA++ C +TA+ + G V++HAA GG G +A+ GA + CG A K
Sbjct: 931523 AASIPCAFMTAYIGLFDIARLQKGQRVLIHAATGGVGQAALMLAQWAGAELFATCGTAAK 931344
Query: 119 AML 121
L
Sbjct: 931343 REL 931335
Score = 52.4 bits (124), Expect = 5e-05, Method: Composition-based stats.
Identities = 46/161 (28%), Positives = 76/161 (47%), Gaps = 2/161 (1%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G EG+G V +VG V +G +VA V G ++ VV A VP+G++ AA
Sbjct: 227492 GFEGSGIVRRVGCSVEHVRVGDKVA----VLYDGLFSTRIVVPARLCHTVPEGMSLEDAA 227659
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
TA Y + + +V++H+A GG GL Q+ ++ GA++ G +EK
Sbjct: 227660 GNSVVFATAIYCLITVGNLQKDQSVLIHSACGGVGLAAIQVCRMIGAKMYTTVGTSEKVR 227839
Query: 121 LATSVGR--ADVVIDYVATPDWPPLVRAAAPKGVDAVYDGV 159
T V + A+ + D +T ++ +GVD V + +
Sbjct: 227840 HLTDVMKIPAERIFDSRSTSFLQGILTETNGRGVDLVLNSL 227962
Score = 44.3 bits (103), Expect = 0.013, Method: Composition-based stats.
Identities = 32/113 (28%), Positives = 53/113 (46%), Gaps = 1/113 (0%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G +GA +V++G VS + V C G++ V L+ +P V A
Sbjct: 413494 GSDGAARIVQIGSAVSNLAVDDLVIL--RTHCKGTWRTHAVFGEDDLIRIPSTVK-PHLA 413324
Query: 61 AVLCQGLT-AHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGI 112
++L G+ A++L+ + PG ++ +AA G V Q+A L G RVI +
Sbjct: 413323 SILRMGIAPAYFLLREYHGLEPGDWIIQNAATGTISHFVSQLAPLYGIRVISV 413165
Score = 43.9 bits (102), Expect = 0.018, Method: Composition-based stats.
Identities = 43/132 (32%), Positives = 60/132 (45%)
Frame = -1
Query: 25 AYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGST 84
A G G++ + + +A+ ++P GV AA VLC G+T + + S PG T
Sbjct: 5393833 AQLSGYTVDGTFQQYALGKATHASKIPKGVPLDAAAPVLCAGITVYKGLKES-GVRPGQT 5393657
Query: 85 VVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLV 144
V + A GG G L Q AK G RVI I GG EK + +G V + PD P
Sbjct: 5393656 VAIVGAGGGLGSLAQQYAKAMGLRVIAIDGGDEKREMCHQLGTE--V*SFYLHPDIPLYQ 5393483
Query: 145 RAAAPKGVDAVY 156
+ K + Y
Sbjct: 5393482 TSELTKTTNQTY 5393447
Score = 42.4 bits (98), Expect = 0.057, Method: Composition-based stats.
Identities = 33/92 (35%), Positives = 54/92 (58%), Gaps = 1/92 (1%)
Frame = -1
Query: 34 GSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGG 93
G++ +T+ A+ + +PDG+ A+AA +LC G+T + + S PG VV+ A GG
Sbjct: 2111566 GTFQQYTLGPANYVTPIPDGLDSAEAAPLLCAGVTVYSALKRS-NARPGQWVVISGAGGG 2111390
Query: 94 TGLLVCQMA-KLRGARVIGICGGAEKAMLATS 124
G L Q+A + G RVIGI G+++ ++ S
Sbjct: 2111389 LGHLAVQLASRGMGLRVIGIDHGSKEELVKES 2111294
Score = 38.1 bits (87), Expect = 0.84, Method: Composition-based stats.
Identities = 32/104 (30%), Positives = 53/104 (50%), Gaps = 1/104 (0%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETML-GKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQA 59
G+E +G +++ G + + G RV+ + C G++A T ++P+ + +A
Sbjct: 2947823 GQEASGVIIRAGSRAASSFTPGDRVS---TLSCGGTHATITRCDYRVTTKIPNTMNFEEA 2947653
Query: 60 AAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAK 103
AA TA+Y + PG +V+VHAAAGG G Q+AK
Sbjct: 2947652 AASPMVHATAYYALVRLAKLRPGQSVLVHAAAGGVGQAAIQLAK 2947521
>ref|XM_001398875.1| Aspergillus niger CBS 513.88 hypothetical protein (An18g04540)
partial mRNA
Length = 999
Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats.
Identities = 76/169 (44%), Positives = 97/169 (57%), Gaps = 5/169 (2%)
Frame = +1
Query: 1 GEEGAGTVVKVG--PGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQ 58
G EGAGT+V +G P +G RVA+ TG YA +T V + +++PDG+TD
Sbjct: 199 GREGAGTIVALGDGPNPYNFQVGDRVAWLS----TGGYAEYTAVPMAKTVKIPDGITDEN 366
Query: 59 AAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEK 118
A GLT LV +YP V+VHAAAGG G L+ Q+ K GA+VIG GG EK
Sbjct: 367 LMASFLSGLTVITLVKETYPVQKDEWVLVHAAAGGAGTLMTQVLKSIGAKVIGTAGGPEK 546
Query: 119 AMLATSVGRADVVIDYVAT--PDWPPLVRA-AAPKGVDAVYDGVGQATF 164
LA S+G ADVVIDY + DW V+ KGVD V+D VG+ T+
Sbjct: 547 CQLAKSLG-ADVVIDYRSEEGKDWVKQVKEITGGKGVDVVFDSVGKDTW 690
>gb|CP000440.1| Burkholderia ambifaria AMMD chromosome 1, complete sequence
Length = 3556545
Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats.
Identities = 76/164 (46%), Positives = 96/164 (58%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V VG GV+ G RVAY G G+YA V+ A L+++PDG++D AA
Sbjct: 2566904 GMEAAGEVTAVGDGVTAFKAGDRVAYVGQP--PGAYAQERVMPAERLVKLPDGISDDDAA 2566731
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+V+ QGLTAHYL+ +YP G T+++HAAAGG GLLVCQ AK GA VIG G EKA
Sbjct: 2566730 SVMLQGLTAHYLLRRTYPVKAGDTILIHAAAGGVGLLVCQWAKALGATVIGTVGSDEKAA 2566551
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
LA + G D I Y + GV VYD +G+ T+
Sbjct: 2566550 LAKAHG-CDHPIVYTRENFTQRVKEITNGAGVPVVYDSIGKDTY 2566422
Score = 99.0 bits (245), Expect = 4e-19, Method: Composition-based stats.
Identities = 65/164 (39%), Positives = 91/164 (55%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V +GPGV+ +G RV Y G + G+Y+ ++ A+ L+ +P G+ AA
Sbjct: 1755452 GVEAAGVVEALGPGVTNVAVGDRVTYTGFLNTLGAYSTERLIAAAPLVRLPAGIGCETAA 1755631
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A+ +GLT+ YL+ + PG T+++HAAAGG GL+V Q AKL G VIG KA
Sbjct: 1755632 AMTMRGLTSAYLLRRIHAFAPGDTILLHAAAGGVGLIVSQWAKLLGLTVIGTVSSEHKAA 1755811
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
+A + G D IDY + GVD V+D VG+ TF
Sbjct: 1755812 VARAHG-CDHTIDYSREDVAKRVRELTGGAGVDVVFDSVGKDTF 1755940
Score = 48.5 bits (114), Expect = 7e-04, Method: Composition-based stats.
Identities = 56/162 (34%), Positives = 74/162 (45%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG + VG GVS G V F G G +A V + +P G+T Q A
Sbjct: 1348094 GAEFAGVIDAVGDGVSAWQPGDEVVAFTG---HGGFAEQCVADVHQIAALPPGMTFEQGA 1348264
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A++ T+ + + G T++V AAGG GL ++AK GARVI A+K
Sbjct: 1348265 ALVLAYGTSLHALQQRARLQQGETLLVLGAAGGVGLAAIEIAKALGARVIAAASSADKLA 1348444
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQA 162
L + G AD IDY + +G D VYD VG A
Sbjct: 1348445 LCRAAG-ADDTIDYATEDLRRRVDELTGGRGADVVYDPVGGA 1348567
Score = 43.9 bits (102), Expect = 0.019, Method: Composition-based stats.
Identities = 41/133 (30%), Positives = 62/133 (46%), Gaps = 6/133 (4%)
Frame = -3
Query: 34 GSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPG-----STVVVH 88
G YA + V L VPDG+TD +AA++ T V G G T++V
Sbjct: 2526295 GGYAEYAVAPLPQCLPVPDGLTDIEAASLPETFFTVWSNVFDRALLGAGEGGEQETLLVQ 2526116
Query: 89 AAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAA 148
+ G G+ Q+A G RV G A+K ++G A+ I+Y T D+ +V++
Sbjct: 2526115 GGSSGIGVTAIQIAHALGFRVFATAGNADKCRACEALG-AERAINY-KTEDFVEVVKSLT 2525942
Query: 149 -PKGVDAVYDGVG 160
+GVD + D V
Sbjct: 2525941 HDRGVDVILDMVA 2525903
>gb|CP001032.1| Opitutus terrae PB90-1, complete genome
Length = 5957605
Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats.
Identities = 78/165 (47%), Positives = 102/165 (61%), Gaps = 1/165 (0%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G+E AG V +G GVS +G+RV G G+YA +V A+ ++VP V+ AA
Sbjct: 1463859 GQEAAGVVTALGAGVSGFRVGERV---GSTAVQGAYAEEAIVPAAQTVKVPGHVSSELAA 1463689
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
AVL QG+TAHYL ++P PG + +VHA AGG GLL+ Q+AK+RGARV+ G EKA
Sbjct: 1463688 AVLLQGMTAHYLACDTWPLKPGESALVHAGAGGVGLLLIQIAKMRGARVLATVGSDEKAE 1463509
Query: 121 LATSVGRADVVIDYVATPDWPPLVRA-AAPKGVDAVYDGVGQATF 164
LA G AD V Y D+ RA + +GVD VYDGVG++TF
Sbjct: 1463508 LARRAG-ADAVCVY-TREDFTAAARAFTSGRGVDVVYDGVGRSTF 1463380
Score = 49.7 bits (117), Expect = 3e-04, Method: Composition-based stats.
Identities = 55/161 (34%), Positives = 69/161 (42%), Gaps = 1/161 (0%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRV-AYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQA 59
G E AG V G V+ +G V A G G YA F V A L VP G + A
Sbjct: 203115 GLEVAGLVEACGAKVTRWQVGDPVCALLAG----GGYAEFVAVDAGHCLPVPKGWSFTDA 203282
Query: 60 AAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKA 119
AA+ T V G T +VH G G+ Q+AK +GARV G EK
Sbjct: 203283 AALPEALFTVWSNVFQRGRLQRGETFLVHGGTSGIGMAAVQLAKAQGARVFATAGTDEKC 203462
Query: 120 MLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
VG A+ I+Y T D+ A +GVD + D +G
Sbjct: 203463 RACEVVG-AERCINY-RTEDF---AAALKDEGVDVILDMIG 203570
Score = 42.4 bits (98), Expect = 0.053, Method: Composition-based stats.
Identities = 47/160 (29%), Positives = 72/160 (45%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG +V+VG GVS G V + G +A + A+ P GV+ +AA
Sbjct: 2508392 GLECAGRIVRVGSGVSGWAPGDEVIGYA----NGCFAQYVAAPVRAIARRPAGVSAVEAA 2508559
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+ TAH+ + + G V++HAAAGG G Q+A+ GA + G K
Sbjct: 2508560 TLPAAFATAHHALVTQGRLARGERVLIHAAAGGVGQAAVQIARHVGAEIFATAGSPAKRA 2508739
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
++G + V+D + A +GVD V + +G
Sbjct: 2508740 ALRAMG-VEHVMDSRTLAFADDVRAATGGRGVDVVLNSLG 2508856
Score = 37.0 bits (84), Expect = 1.9, Method: Composition-based stats.
Identities = 44/164 (26%), Positives = 61/164 (37%), Gaps = 21/164 (12%)
Frame = -1
Query: 14 GVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLV 73
G E GK + G + G+ A V + L P ++ +AAAV GLTA +
Sbjct: 4947865 GSDENAQGKDFSILG-LPRDGTLAEKIAVPVAQLAAKPGHLSWTEAAAVPLAGLTAWRAL 4947689
Query: 74 DSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEK--------------- 118
S G V++ GG L Q A GA V AEK
Sbjct: 4947688 MSRARLQRGERVLITGIGGGVALFALQFAVAAGAEVWVTSSSAEKIARAVELGARGGANY 4947509
Query: 119 ------AMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVY 156
A LA + G V++D P +P ++ A P G A +
Sbjct: 4947508 TDADWSAQLAKTAGHFHVIVDSAGGPGFPSVLDLATPGGRVAFF 4947377
>gb|CP001364.1| Chloroflexus sp. Y-400-fl, complete genome
Length = 5268950
Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats.
Identities = 79/165 (47%), Positives = 97/165 (58%), Gaps = 1/165 (0%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AGT+ VG GVSE +G RV G +G YA + + A L+ VPD V AA
Sbjct: 2690379 GLEVAGTIDAVGEGVSEWAVGDRV---GCTTASGGYAEYALAAADKLVRVPDNVDLETAA 2690549
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
AVL QG+TAHYL S++P G T +VHAAAGG GLL+ Q+A+ GARVIG EKA
Sbjct: 2690550 AVLLQGMTAHYLTFSTFPLKAGDTCLVHAAAGGVGLLLIQIARRLGARVIGTVSTDEKAE 2690729
Query: 121 LATSVGRADVVIDYVATPDWPPLVRA-AAPKGVDAVYDGVGQATF 164
LA + G +VVI + VRA +GVD VYD VG +T
Sbjct: 2690730 LARAAGADEVVI--YTRESFVERVRAFTNGRGVDVVYDSVGASTL 2690858
Score = 40.8 bits (94), Expect = 0.15, Method: Composition-based stats.
Identities = 40/158 (25%), Positives = 65/158 (41%), Gaps = 25/158 (15%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRV------------------------AYFGGVGCTGSY 36
G E AG V +VGPGV+ +G V F G+ C G +
Sbjct: 4272578 GHENAGWVEEVGPGVTSVKVGDPVICHPLRSCGVCLGCRRGEDMYCEHGSFPGLNCDGGF 4272757
Query: 37 AAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLV-DSSYPCGPGSTVVVHAAAGGTG 95
A + + AL+++ V A + G+TA+ + ++ PG V+ G
Sbjct: 4272758 AEYMLTNERALIKLNPNVAPVDVAPLADAGITAYRVAKKAARKLNPGQYCVILGVGGLGH 4272937
Query: 96 LLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVID 133
+ + + +L GAR+I I LA ++G A V+D
Sbjct: 4272938 IALQSVRELCGARIIAIDRSEAARQLARNLG-AHYVLD 4273048
Score = 38.9 bits (89), Expect = 0.60, Method: Composition-based stats.
Identities = 25/93 (26%), Positives = 43/93 (46%)
Frame = -2
Query: 34 GSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGG 93
GS+ F + QA L +P ++ A + + T + + ++ G T+ + AA G
Sbjct: 816496 GSHQQFMLAQAPQCLPIPTDMSIEAAGSYILNLGTIYRALFTTLQIKAGRTIFIEGAATG 816317
Query: 94 TGLLVCQMAKLRGARVIGICGGAEKAMLATSVG 126
TGL + A G RVIG+ + +A + G
Sbjct: 816316 TGLDAARSAARNGLRVIGMVSSSSRASTLLAAG 816218
>gb|CP000909.1| Chloroflexus aurantiacus J-10-fl, complete genome
Length = 5258541
Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats.
Identities = 79/165 (47%), Positives = 97/165 (58%), Gaps = 1/165 (0%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AGT+ VG GVSE +G RV G +G YA + + A L+ VPD V AA
Sbjct: 2695035 GLEVAGTIDAVGEGVSEWAVGDRV---GCTTASGGYAEYALAAADKLVRVPDNVDLETAA 2695205
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
AVL QG+TAHYL S++P G T +VHAAAGG GLL+ Q+A+ GARVIG EKA
Sbjct: 2695206 AVLLQGMTAHYLTFSTFPLKAGDTCLVHAAAGGVGLLLIQIARRLGARVIGTVSTDEKAE 2695385
Query: 121 LATSVGRADVVIDYVATPDWPPLVRA-AAPKGVDAVYDGVGQATF 164
LA + G +VVI + VRA +GVD VYD VG +T
Sbjct: 2695386 LARAAGADEVVI--YTRESFVERVRAFTNGRGVDVVYDSVGASTL 2695514
Score = 40.8 bits (94), Expect = 0.15, Method: Composition-based stats.
Identities = 40/158 (25%), Positives = 65/158 (41%), Gaps = 25/158 (15%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRV------------------------AYFGGVGCTGSY 36
G E AG V +VGPGV+ +G V F G+ C G +
Sbjct: 4262535 GHENAGWVEEVGPGVTSVKVGDPVICHPLRSCGVCLGCRRGEDMYCEHGSFPGLNCDGGF 4262714
Query: 37 AAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLV-DSSYPCGPGSTVVVHAAAGGTG 95
A + + AL+++ V A + G+TA+ + ++ PG V+ G
Sbjct: 4262715 AEYMLTNERALIKLNPNVAPVDVAPLADAGITAYRVAKKAARKLNPGQYCVILGVGGLGH 4262894
Query: 96 LLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVID 133
+ + + +L GAR+I I LA ++G A V+D
Sbjct: 4262895 IALQSVRELCGARIIAIDRSEAARQLARNLG-AHYVLD 4263005
Score = 38.9 bits (89), Expect = 0.56, Method: Composition-based stats.
Identities = 25/93 (26%), Positives = 43/93 (46%)
Frame = -1
Query: 34 GSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGG 93
GS+ F + QA L +P ++ A + + T + + ++ G T+ + AA G
Sbjct: 816354 GSHQQFMLAQAPQCLPIPTDMSIEAAGSYILNLGTIYRALFTTLQIKAGRTIFIEGAATG 816175
Query: 94 TGLLVCQMAKLRGARVIGICGGAEKAMLATSVG 126
TGL + A G RVIG+ + +A + G
Sbjct: 816174 TGLDAARSAARNGLRVIGMVSSSSRASTLLAAG 816076
>gb|EU686621.1| Uncultured bacterium KM3-187-G1 genomic sequence
Length = 33374
Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats.
Identities = 75/165 (45%), Positives = 94/165 (56%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G EGAG V VG GV+E +G R AY +G SY ++ + L+++PDGVTD QAA
Sbjct: 24426 GNEGAGVVEAVGDGVTEVAVGDRAAYCMSLG---SYTQRRIIGSKQLVKIPDGVTDEQAA 24596
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
AV+ +G T YL+ +YP G TV+ HAAAGG GL+ CQ K GA VIG G EKA
Sbjct: 24597 AVMLKGCTVQYLIRRTYPVKAGETVLFHAAAGGCGLIACQWLKYLGATVIGTVGTPEKAE 24776
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATFA 165
LA + G D I Y + KGV VYD VG+ TF+
Sbjct: 24777 LAKAHG-CDHPIVYAQENVVERVKELTDDKGVPVVYDSVGKDTFS 24908
>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome
Length = 3928089
Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats.
Identities = 77/165 (46%), Positives = 101/165 (61%), Gaps = 1/165 (0%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V +G GV++ +G RVAY G+YA + L+++PD ++D QAA
Sbjct: 205457 GHEAAGVVEAIGDGVTDVAVGDRVAYMNA--GLGAYAEGRNIPVDKLVKLPDAISDEQAA 205630
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
AV+ +G+TA YLV +Y PG TV+VHAAAGG G ++ AK GARVIG G A K
Sbjct: 205631 AVIFKGMTAQYLVRHTYAVKPGDTVLVHAAAGGVGQILSGWAKALGARVIGTAGSAAKCE 205810
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAP-KGVDAVYDGVGQATF 164
+A +VG DV IDY + DW VR A +GV+ VYD VG+ TF
Sbjct: 205811 IARAVG-CDVAIDY-SHGDWVKQVRDATDGRGVNVVYDAVGKDTF 205939
Score = 90.1 bits (222), Expect = 2e-16, Method: Composition-based stats.
Identities = 63/165 (38%), Positives = 92/165 (55%), Gaps = 1/165 (0%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E +G V +GP V+ +G RV Y G + G+Y+ +V A+ L+ +P+ + AA
Sbjct: 1857891 GVEASGVVQAIGPDVTNVAVGDRVTYTGFLNTLGAYSTERLVPAAPLIRLPENIGFETAA 1858070
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A+ +GLT+ YL+ Y G T+++HAAAGG GL+V Q AKL+G VIG KA
Sbjct: 1858071 AMTMRGLTSAYLMRRIYAFKRGDTILLHAAAGGVGLIVSQWAKLQGLNVIGTVSSEAKAE 1858250
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPK-GVDAVYDGVGQATF 164
+A + G D +I+Y + D VR G V+D VG+ TF
Sbjct: 1858251 VARAHG-CDHIINY-SHEDVAKRVRELTDGVGATVVFDSVGKNTF 1858379
Score = 58.9 bits (141), Expect = 6e-07, Method: Composition-based stats.
Identities = 38/98 (38%), Positives = 52/98 (53%), Gaps = 3/98 (3%)
Frame = -1
Query: 66 GLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSV 125
G+TA Y ++ G TVVV AA+G G +V Q+AKL G V+G+ GG EK +
Sbjct: 2003520 GVTAWYGLNKIIAPKAGETVVVSAASGAVGSVVGQLAKLAGCYVVGVAGGKEKCDYVVNE 2003341
Query: 126 GRADVVIDYVATPDWPPL---VRAAAPKGVDAVYDGVG 160
D +DY A D L V+A P G+D ++ VG
Sbjct: 2003340 LGFDACVDYKAAKDAKELYAMVKAVTPNGIDGYFENVG 2003227
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 60/163 (36%), Positives = 81/163 (49%), Gaps = 3/163 (1%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETM-LGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVT-DAQ 58
G E AG V VG GV+ K +AY G G++A+ A A++ +P G+ D
Sbjct: 2300929 GSELAGVVNAVGAGVTHVKPRDKVIAYLG----NGAFASQAKAPAKAVVPMPPGIDFDVA 2301096
Query: 59 AAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEK 118
AA L G + H +VD G T++V AAGG GL ++ K GARVI EK
Sbjct: 2301097 AAFTLTYGTSHHAVVDRG-ELKAGETMLVLGAAGGVGLAAIEIGKAIGARVIAAASTDEK 2301273
Query: 119 AMLATSVGRADVVIDYVATPDWPPLVRAAAP-KGVDAVYDGVG 160
+ G AD +I+Y +T D V+A KG D +YD VG
Sbjct: 2301274 LAVCKEHG-ADALINY-STEDLRERVKALTDGKGPDVIYDPVG 2301396
Score = 40.8 bits (94), Expect = 0.13, Method: Composition-based stats.
Identities = 43/138 (31%), Positives = 60/138 (43%), Gaps = 6/138 (4%)
Frame = +2
Query: 34 GSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDS-----SYPCGPGSTVVVH 88
G YA L VP+G+TD +AAA+ T V P G T+++
Sbjct: 1010093 GGYAELCTAPIEQCLPVPEGLTDIEAAALPETFFTVWSNVFDRGQLGKGPRGAAETLLIQ 1010272
Query: 89 AAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAA 148
+ G G Q+AK G +V G +K S+G AD I+Y T D+ V+A
Sbjct: 1010273 GGSSGIGTTAIQIAKALGFKVFVTAGSDDKCKACESLG-ADRAINY-KTQDFVAEVKALT 1010446
Query: 149 P-KGVDAVYDGVGQATFA 165
KGVD + D V + A
Sbjct: 1010447 EGKGVDVILDMVAGSYLA 1010500
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence
Length = 3694126
Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats.
Identities = 75/164 (45%), Positives = 95/164 (57%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V VG GV+ G RVAY G G+YA V+ A L+++PDG++ AA
Sbjct: 2718091 GMEAAGEVTAVGEGVTTLKAGDRVAYVGQP--PGAYAQERVMPADRLVKLPDGISYDDAA 2717918
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+V+ QGLTAHYL+ +YP G T+++HAAAGG GLLVCQ AK GA VIG G EKA
Sbjct: 2717917 SVMLQGLTAHYLLRRTYPVKAGDTILIHAAAGGVGLLVCQWAKALGATVIGTVGSDEKAA 2717738
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
LA + G D I Y + GV VYD +G+ T+
Sbjct: 2717737 LAKAHG-CDHPIVYTRENFTQRVKEITNGAGVPVVYDSIGKDTY 2717609
Score = 101 bits (251), Expect = 8e-20, Method: Composition-based stats.
Identities = 66/164 (40%), Positives = 92/164 (56%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V VGPGV+ +G RV Y G + G+Y+ ++ A+ L+ +P G++ AA
Sbjct: 1858012 GVEAAGVVEAVGPGVTNVAVGDRVTYTGFLNTLGAYSTERLIPAAPLVRLPAGISCETAA 1858191
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A+ +GLT+ YL+ + PG T+++HAAAGG GL+V Q AKL G VIG KA
Sbjct: 1858192 AMTMRGLTSAYLLRRIHAFAPGDTILLHAAAGGVGLIVSQWAKLLGLNVIGTVSSEHKAG 1858371
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
+A + G D IDY + GVD V+D VG+ TF
Sbjct: 1858372 IARAHG-CDHTIDYSREDVAKRVRELTDGAGVDVVFDSVGKDTF 1858500
Score = 49.7 bits (117), Expect = 3e-04, Method: Composition-based stats.
Identities = 55/162 (33%), Positives = 73/162 (45%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG + VG GV+ G V F G G +A V + +P G+T Q A
Sbjct: 1438462 GAEFAGVIDAVGEGVTAWRPGDSVVAFTG---HGGFAQQCVADVHQIAALPPGMTFEQGA 1438632
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A++ T+ + + G T++V AAGG GL ++AK GARVI A+K
Sbjct: 1438633 ALVLAYGTSLHALQQRARLQEGETLLVLGAAGGVGLAAIEIAKALGARVIAAASSADKLA 1438812
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQA 162
L G AD IDY + +G D VYD VG A
Sbjct: 1438813 LCREAG-ADETIDYATEDLRRRVDELTGGRGADVVYDPVGGA 1438935
Score = 43.5 bits (101), Expect = 0.025, Method: Composition-based stats.
Identities = 41/133 (30%), Positives = 62/133 (46%), Gaps = 6/133 (4%)
Frame = -2
Query: 34 GSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPG-----STVVVH 88
G YA + V L VPDG+TD +AA++ T V G G T++V
Sbjct: 2677473 GGYAEYAVAPLPQCLPVPDGLTDIEAASLPETFFTVWSNVFDRAQLGAGEGGEQETLLVQ 2677294
Query: 89 AAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAA 148
+ G G+ Q+A G RV G A+K ++G A+ I+Y T D+ +V++
Sbjct: 2677293 GGSSGIGVTAIQIAHALGFRVFATAGTADKCRACEALG-AERAINY-KTEDFVEVVKSLT 2677120
Query: 149 -PKGVDAVYDGVG 160
+GVD + D V
Sbjct: 2677119 HDRGVDVILDMVA 2677081
Score = 38.5 bits (88), Expect = 0.65, Method: Composition-based stats.
Identities = 43/133 (32%), Positives = 62/133 (46%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E +G VV+VG V+E G + F S+A +A A+ P+ ++ +AA
Sbjct: 790192 GMELSGRVVRVGNAVTEFAPGDAMLGFA----PASFATRVRTRAQAIALKPERLSFEEAA 790359
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
V TA+Y + G V+VH AGG G+ Q+A+ GA V G EK
Sbjct: 790360 TVPTTFFTAYYALVELARLRRGERVLVHGGAGGVGIAAIQLARHFGAEVFATAGSDEKRE 790539
Query: 121 LATSVGRADVVID 133
+G AD V+D
Sbjct: 790540 FVRLLG-ADHVLD 790575
Score = 36.2 bits (82), Expect = 3.9, Method: Composition-based stats.
Identities = 49/162 (30%), Positives = 67/162 (41%), Gaps = 7/162 (4%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVV--QASAL----LEVPDGV 54
G + AGTVV VG V+ G V Y G + G+ + F V + +AL L+
Sbjct: 2114034 GWDAAGTVVAVGADVTLFRPGDEVFYAGSITRPGANSEFHTVDERIAALKPRTLDFAAAA 2113855
Query: 55 TDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGA-RVIGIC 113
A + L V S G +V++ AGG G + Q+AK G VI
Sbjct: 2113854 ALPLTALTAWEALFDRLHV-SPQGADAGKSVLIIGGAGGVGSIAIQLAKTLGKLHVIATA 2113678
Query: 114 GGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAV 155
A S+G AD V+D+ D P +R A VD V
Sbjct: 2113677 SRPASADWVRSLG-ADAVVDHFG--DLPAQLREAGHPNVDYV 2113561
Score = 35.8 bits (81), Expect = 5.3, Method: Composition-based stats.
Identities = 32/99 (32%), Positives = 46/99 (46%)
Frame = +2
Query: 34 GSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGG 93
G Y+ VV + +L VPD + A AA +LC G+T Y + GPG V + G
Sbjct: 3621212 GGYSTQLVVDEAFVLRVPDTLDPAGAAPLLCAGITT-YSPLRQWNVGPGKKVGIVGLGGL 3621388
Query: 94 TGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVI 132
+ V ++A+ GA V+ K VG +VVI
Sbjct: 3621389 GHMGV-KLARAMGAHVVLFTTSPSKIEDGKRVGAHEVVI 3621502
Score = 35.4 bits (80), Expect = 6.2, Method: Composition-based stats.
Identities = 32/111 (28%), Positives = 48/111 (43%)
Frame = +3
Query: 29 GVGCTGSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVH 88
G G +A + V A + +PD + AA ++C G T + + P P V V
Sbjct: 1313970 GFASQGGHAEYIAVAAEGTVLLPDALAYVDAAPMMCAGYTTWSGLRDAAP-QPHEKVAV- 1314143
Query: 89 AAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPD 139
GG G + Q+++ G I I A+K LA +G VV + A D
Sbjct: 1314144 LGIGGLGHVALQLSRACGFETIAITHSADKRDLAIGLGADRVVENGAALRD 1314296
>gb|CP001298.1| Methylobacterium chloromethanicum CM4, complete genome
Length = 5777908
Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats.
Identities = 77/164 (46%), Positives = 99/164 (60%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G+EGAG V +G GV++ +G+RVAY G TG+YA V ++ VPD ++D AA
Sbjct: 4509799 GKEGAGVVDALGEGVTDFRVGERVAY---AGATGTYAEEVTVDTKGVVHVPDSISDETAA 4509969
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A++ +GLTA YL+ +Y PG T++ HAAAGG GL+ Q AK GA VIG G AEKA
Sbjct: 4509970 AMMLKGLTAQYLLRRTYRVQPGDTILFHAAAGGVGLIATQWAKHLGATVIGTVGSAEKAE 4510149
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
LA + G D VI Y + KGV VYDGVG+ATF
Sbjct: 4510150 LARAHG-CDHVILYRDEDFAARVKEITGGKGVPVVYDGVGKATF 4510278
Score = 68.2 bits (165), Expect = 9e-10, Method: Composition-based stats.
Identities = 60/161 (37%), Positives = 76/161 (47%), Gaps = 1/161 (0%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E G + +GPG +G R+ G A V L VP+ V+D AA
Sbjct: 942924 GGEACGVIEALGPGAEGFSIGDRLMVHLSHGTARERIA---VPVKRLARVPEAVSDEIAA 943094
Query: 61 AV-LCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKA 119
+ + G T H L D + PG T+VV A+GG GL ++ KL GARVI EK
Sbjct: 943095 GLSITYGTTLHALRDRAR-IRPGETLVVLGASGGVGLAAVELGKLLGARVIACASSPEKL 943271
Query: 120 MLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
A + G AD +IDY A L R +GVD VYD VG
Sbjct: 943272 ETARAHG-ADDLIDYKADNLREALRRLTGERGVDVVYDAVG 943391
Score = 58.9 bits (141), Expect = 5e-07, Method: Composition-based stats.
Identities = 51/162 (31%), Positives = 73/162 (45%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG + +G GV+ G+ V + +G YA F V +A +L+ P ++ +AA
Sbjct: 1881278 GLEIAGRIAALGEGVTGFSEGEEVC---ALVISGGYAEFAVAEAGQVLKKPGPLSLVEAA 1881108
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+ T + V G T +VH + G G Q+AK GARV+ G EK
Sbjct: 1881107 GLPETVFTVYSTVIQRGRLQKGETFLVHGGSSGIGTTAIQIAKQHGARVLTTAGSDEKCR 1880928
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQA 162
+G AD I+Y + R KGVD + D VG A
Sbjct: 1880927 FCEELG-ADAAINYREADFAEEVKRLTDGKGVDVILDMVGAA 1880805
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 53/181 (29%), Positives = 74/181 (40%), Gaps = 19/181 (10%)
Frame = -1
Query: 3 EGAGTVVKVGPGVSETMLGKRVA------YFGGV------------GCTGSYAAFTVVQA 44
+GAG +V +GPGV G+RVA + GG G + V
Sbjct: 3654835 DGAGEIVAIGPGVRRFSGGERVAGIFSQSWLGGAQVADTWQTALGGAIDGVLTEYQVFDE 3654656
Query: 45 SALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKL 104
L+ +PD ++ + A + C +TA + P G TV+ GG + Q+A
Sbjct: 3654655 DGLVTLPDHLSFEEGATLPCAAVTAWNALYGLKPLRAGETVLT-LGTGGVSIFAIQLAHA 3654479
Query: 105 RGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRA-AAPKGVDAVYDGVGQAT 163
GARVI K A ++G D I+Y PDW VR GVD V + G T
Sbjct: 3654478 AGARVIATSSSDAKLEKARALGAHD-TINYRTHPDWEGEVRRLTGGTGVDHVVEVGGTGT 3654302
Query: 164 F 164
Sbjct: 3654301 L 3654299
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 53/169 (31%), Positives = 82/169 (48%), Gaps = 4/169 (2%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAY----FGGVGCTGSYAAFTVVQASALLEVPDGVTD 56
G + +G V +VG V++ +G V Y F G GSYA + V A + P +T
Sbjct: 2088164 GHDVSGVVDQVGSDVTKFRVGDEVYYTPQIFSG---PGSYAEYHVADADIVARKPVNLTH 2087994
Query: 57 AQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGA 116
++AA++ G+T + TV++H AGG G + Q+AK GARV+ G+
Sbjct: 2087993 SEAASISLVGVTVWEGLVERARLQVTETVLIHGGAGGVGAIAVQVAKAIGARVLATARGS 2087814
Query: 117 EKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATFA 165
+ A L +G A VID+ + R +GVD V D +G+ T +
Sbjct: 2087813 DAA-LVERLG-ASAVIDFEREDYVDAVDRLTEGRGVDVVLDTIGRDTLS 2087673
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 55/159 (34%), Positives = 79/159 (49%), Gaps = 5/159 (3%)
Frame = -3
Query: 11 VGPGVSETMLGKRVAYFGG--VGCTGSYAAFTVVQASAL--LEVPDGVTDAQAAAVLCQG 66
VG VSE ++ + A+ G V + F V L ++ DG + G
Sbjct: 2651969 VGQTVSEVVVSENPAFAEGDLVLANAGWQEFAVSDGKNLQRIDPADGPPSQFLGILGMPG 2651790
Query: 67 LTAHY-LVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSV 125
+TA+ L++ P P TVVV AAAG G LV Q+A+++GAR +GI GGAEK T
Sbjct: 2651789 MTAYTGLLEIGRP-QPKETVVVAAAAGPVGSLVGQIARIKGARAVGIAGGAEKCAYLTET 2651613
Query: 126 GRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
D +D+ A D+P + P G+D ++ VG A F
Sbjct: 2651612 LGFDAAVDHRAA-DFPDALARTCPDGIDVYFENVGGAVF 2651499
Score = 48.9 bits (115), Expect = 6e-04, Method: Composition-based stats.
Identities = 42/122 (34%), Positives = 59/122 (48%), Gaps = 1/122 (0%)
Frame = -2
Query: 44 ASALLEVPDGVTDAQAA-AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMA 102
A ++ VP GV QAA A + G H L D++ PG +++VHA G G +MA
Sbjct: 5347053 ARLVVRVPGGVDHVQAACAGIAFGTVQHMLFDNAR-LEPGESILVHAGGSGIGTAAIKMA 5346877
Query: 103 KLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQA 162
K G V G K A ++G AD V++Y + R KGVD V++ VG
Sbjct: 5346876 KAIGCTVYTTVGDDAKGEKAKALG-ADHVVNYREERFEGEVRRLTKRKGVDVVFEHVGAE 5346700
Query: 163 TF 164
T+
Sbjct: 5346699 TW 5346694
Score = 43.9 bits (102), Expect = 0.018, Method: Composition-based stats.
Identities = 40/155 (25%), Positives = 65/155 (41%), Gaps = 24/155 (15%)
Frame = -2
Query: 34 GSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYP--CGPGSTVVVHAAA 91
GS+A F VQ+ L+ P +T +AA TA+ ++ P PG V++ A+
Sbjct: 312873 GSFAQFCRVQSRQLMARPKHLTWEEAACYTLTLATAYRMLFGHAPHTVRPGQNVLIWGAS 312694
Query: 92 GGTGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVV----------IDYVATPDWP 141
GG G+ Q+ GA I + K S+G V+ + V +P++
Sbjct: 312693 GGLGVFGVQLCAASGANAIAVISDESKRDYVMSLGAKGVINRKDFDCWGQLPTVNSPEYN 312514
Query: 142 PLVRAAAPKG------------VDAVYDGVGQATF 164
++ A G VD V++ G+ATF
Sbjct: 312513 TWLKEARKFGKAIWDITGKGNDVDIVFEHPGEATF 312409
Score = 40.8 bits (94), Expect = 0.15, Method: Composition-based stats.
Identities = 48/133 (36%), Positives = 67/133 (50%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E +G V +G GV + +G V F G +A VV + +P G+ A AA
Sbjct: 2330123 GLEVSGQVTAIGQGVVDLAVGDTVVAFAQSG----FATHVVVPEMVVAPMPAGLDPAAAA 2329956
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
V LTA+Y + + G ++VH AGG GL Q+AK +GARVI G EK
Sbjct: 2329955 TVPVAFLTAYYALCTCARLRKGEWLLVHGGAGGVGLAALQIAKWKGARVIATAGSREKRA 2329776
Query: 121 LATSVGRADVVID 133
L ++G A+ V+D
Sbjct: 2329775 LVAALG-AEHVLD 2329740
>gb|CP000908.1| Methylobacterium extorquens PA1, complete genome
Length = 5471154
Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats.
Identities = 77/164 (46%), Positives = 99/164 (60%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G+EGAG V +G GV++ +G+RVAY G TG+YA V ++ VPD ++D AA
Sbjct: 4339477 GKEGAGVVDALGEGVTDFRVGERVAY---AGATGTYAEEVTVDTKGVVHVPDSISDETAA 4339647
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A++ +GLTA YL+ +Y PG T++ HAAAGG GL+ Q AK GA VIG G AEKA
Sbjct: 4339648 AMMLKGLTAQYLLRRTYRVQPGDTILFHAAAGGVGLIATQWAKHLGATVIGTVGSAEKAE 4339827
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
LA + G D VI Y + KGV VYDGVG+ATF
Sbjct: 4339828 LARAHG-CDHVILYRDEDFAARVKEITGGKGVPVVYDGVGKATF 4339956
Score = 66.2 bits (160), Expect = 3e-09, Method: Composition-based stats.
Identities = 60/161 (37%), Positives = 75/161 (46%), Gaps = 1/161 (0%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E G + +G G +G RV G A V L VP+ V+D AA
Sbjct: 1042959 GGEACGVIEALGAGAESFSVGDRVMVHLSHGTARERIA---VPVKRLARVPEAVSDEIAA 1043129
Query: 61 AV-LCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKA 119
+ + G T H L D + PG T+VV A+GG GL ++ KL GARVI EK
Sbjct: 1043130 GLSITYGTTLHALRDRAR-IRPGETLVVLGASGGVGLAAVELGKLLGARVIACASSPEKL 1043306
Query: 120 MLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
A + G AD +IDY A L R +GVD VYD VG
Sbjct: 1043307 ETARAHG-ADDLIDYKADNLREALRRLTGERGVDVVYDAVG 1043426
Score = 58.2 bits (139), Expect = 8e-07, Method: Composition-based stats.
Identities = 50/162 (30%), Positives = 72/162 (44%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG + +G G++ G V + +G YA F V +A +L+ P ++ +AA
Sbjct: 1726638 GLEVAGRIAALGEGMTGFSEGDEVC---ALVISGGYAEFAVAEAGQVLKKPGPLSLVEAA 1726468
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+ T + V G T +VH + G G Q+AK GARV+ G EK
Sbjct: 1726467 GLPETTFTVYSTVIQRGRLQKGETFLVHGGSSGIGTTAIQIAKQHGARVLTTAGSDEKCR 1726288
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQA 162
+G AD I+Y + R KGVD + D VG A
Sbjct: 1726287 FCEELG-ADAAINYREADFAEEVKRLTDGKGVDVILDMVGAA 1726165
Score = 56.2 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 55/169 (32%), Positives = 83/169 (49%), Gaps = 4/169 (2%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAY----FGGVGCTGSYAAFTVVQASALLEVPDGVTD 56
G + +G V +VGP V++ +G V Y F G GSYA + V A + P +T
Sbjct: 1894283 GHDVSGVVDQVGPDVTKFRVGDEVYYTPRIFSG---PGSYAEYHVADADIVARKPVNLTH 1894113
Query: 57 AQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGA 116
++AA+V G+T + TV++H AGG G + Q+AK GARV+ G+
Sbjct: 1894112 SEAASVSLVGVTVWEGLVERARLQVTETVLIHGGAGGVGAIAVQVAKAIGARVLATARGS 1893933
Query: 117 EKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATFA 165
+ A L +G A VID+ + R +GVD V D +G+ T +
Sbjct: 1893932 DAA-LVEQLG-ASAVIDFEREDYVDAVNRLTEGRGVDVVLDTIGRDTLS 1893792
Score = 52.0 bits (123), Expect = 7e-05, Method: Composition-based stats.
Identities = 52/181 (28%), Positives = 75/181 (41%), Gaps = 19/181 (10%)
Frame = -2
Query: 3 EGAGTVVKVGPGVSETMLGKRVA------YFGGVGCT------------GSYAAFTVVQA 44
+GAG +V +G GV G+RVA + GG + G + V
Sbjct: 3497363 DGAGEIVALGAGVRRFTGGERVAGIFSQSWLGGAQVSDTWQTALGGAIDGVLTEYQVFDE 3497184
Query: 45 SALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKL 104
L+ +PD ++ + A + C +TA + P G TV+ GG + Q+A
Sbjct: 3497183 DGLVTLPDHLSFEEGATLPCAAVTAWNALYGLKPLRAGETVLT-LGTGGVSIFAIQLAHA 3497007
Query: 105 RGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRA-AAPKGVDAVYDGVGQAT 163
GARVI +K A ++G D I+Y PDW VR GVD V + G T
Sbjct: 3497006 AGARVIATSSSDDKLEKARALGAHD-TINYRTHPDWEGEVRRLTGGTGVDHVVEVGGTGT 3496830
Query: 164 F 164
Sbjct: 3496829 L 3496827
Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/68 (41%), Positives = 40/68 (58%)
Frame = -3
Query: 97 LVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVY 156
LV Q+A+++GAR +GI GGAEK T D +D+ A D+P + A P G+D +
Sbjct: 2493382 LVGQIARIKGARAVGIAGGAEKCAYLTETLGFDAAVDHRAA-DFPDALARACPDGIDVYF 2493206
Query: 157 DGVGQATF 164
+ VG A F
Sbjct: 2493205 ENVGGAVF 2493182
Score = 49.3 bits (116), Expect = 4e-04, Method: Composition-based stats.
Identities = 42/122 (34%), Positives = 59/122 (48%), Gaps = 1/122 (0%)
Frame = -1
Query: 44 ASALLEVPDGVTDAQAA-AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMA 102
A ++ VP GV QAA A + G H L D++ PG +++VHA G G +MA
Sbjct: 5072907 ARLVVRVPGGVDHVQAACAGIAFGTVQHMLFDNAR-LEPGESILVHAGGSGIGTAAIKMA 5072731
Query: 103 KLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQA 162
K G V G K A ++G AD V++Y + R KGVD V++ VG
Sbjct: 5072730 KAIGCTVYTTVGDDAKGEKAKALG-ADHVVNYREERFEGEVRRLTKRKGVDVVFEHVGAE 5072554
Query: 163 TF 164
T+
Sbjct: 5072553 TW 5072548
Score = 43.9 bits (102), Expect = 0.019, Method: Composition-based stats.
Identities = 40/155 (25%), Positives = 65/155 (41%), Gaps = 24/155 (15%)
Frame = -3
Query: 34 GSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYP--CGPGSTVVVHAAA 91
GS+A F VQ+ L+ P +T +AA TA+ ++ P PG V++ A+
Sbjct: 324151 GSFAQFCRVQSRQLMARPKHLTWEEAACYTLTLATAYRMLFGHAPHTVRPGQNVLIWGAS 323972
Query: 92 GGTGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVV----------IDYVATPDWP 141
GG G+ Q+ GA I + K S+G V+ + V +P++
Sbjct: 323971 GGLGVFGVQLCAASGANAIAVISDESKRDYVMSLGAKGVINRKAFDCWGQLPTVNSPEYN 323792
Query: 142 PLVRAAAPKG------------VDAVYDGVGQATF 164
++ A G VD V++ G+ATF
Sbjct: 323791 TWLKEARKFGKAIWDITGKGNDVDIVFEHPGEATF 323687
Score = 41.2 bits (95), Expect = 0.10, Method: Composition-based stats.
Identities = 49/133 (36%), Positives = 67/133 (50%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E +G V +G GV + +G V F G +A VV + +P G+ A AA
Sbjct: 2170727 GLEVSGQVTAIGQGVVDFAVGDAVVAFAQSG----FATHVVVPEMVVAPMPAGLDPAAAA 2170560
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
V LTA+Y + S G ++VH AGG GL Q+AK +GARVI G EK
Sbjct: 2170559 TVPVAFLTAYYALCSCARLRKGEWLLVHGGAGGVGLAALQIAKWKGARVIATAGSREKRA 2170380
Query: 121 LATSVGRADVVID 133
L ++G A+ V+D
Sbjct: 2170379 LVAALG-AEHVLD 2170344
>emb|AM270408.1| Aspergillus niger contig An18c0160, complete genome
Length = 121589
Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats.
Identities = 76/169 (44%), Positives = 97/169 (57%), Gaps = 5/169 (2%)
Frame = -1
Query: 1 GEEGAGTVVKVG--PGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQ 58
G EGAGT+V +G P +G RVA+ TG YA +T V + +++PDG+TD
Sbjct: 2954 GREGAGTIVALGDGPNPYNFQVGDRVAWLS----TGGYAEYTAVPMAKTVKIPDGITDEN 2787
Query: 59 AAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEK 118
A GLT LV +YP V+VHAAAGG G L+ Q+ K GA+VIG GG EK
Sbjct: 2786 LMASFLSGLTVITLVKETYPVQKDEWVLVHAAAGGAGTLMTQVLKSIGAKVIGTAGGPEK 2607
Query: 119 AMLATSVGRADVVIDYVAT--PDWPPLVRA-AAPKGVDAVYDGVGQATF 164
LA S+G ADVVIDY + DW V+ KGVD V+D VG+ T+
Sbjct: 2606 CQLAKSLG-ADVVIDYRSEEGKDWVKQVKEITGGKGVDVVFDSVGKDTW 2463
>gb|CP000386.1| Rubrobacter xylanophilus DSM 9941, complete genome
Length = 3225748
Score = 112 bits (279), Expect = 5e-23, Method: Composition-based stats.
Identities = 78/165 (47%), Positives = 96/165 (58%), Gaps = 1/165 (0%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQ-A 59
G+EGAG V VG GV E G VA+ G G+YA + VV A L+ V + +A+ A
Sbjct: 980045 GQEGAGRVDAVGEGVEEFSEGDYVAFASAPG--GAYAEYAVVPADRLVPVNVTLVEARVA 979872
Query: 60 AAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKA 119
AA + QG+TAHYL S++P G + HAAAGG GLL+ QMAK+RGA +IG G EKA
Sbjct: 979871 AAAMLQGMTAHYLTHSTFPLEEGHVALAHAAAGGVGLLLIQMAKMRGATIIGTAGTPEKA 979692
Query: 120 MLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
LA G AD VI Y R +GV VYD VG+ATF
Sbjct: 979691 RLAREAG-ADEVILYTERDFVEETRRITGGQGVHVVYDSVGRATF 979560
Score = 99.8 bits (247), Expect = 3e-19, Method: Composition-based stats.
Identities = 73/169 (43%), Positives = 95/169 (56%), Gaps = 9/169 (5%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V + GPGV +G+RVA G G YA + +V AS L+ VP+G+ +AA
Sbjct: 2409548 GSEVAGVVAEAGPGVEGVSVGERVAALVG---EGGYAEYALVPASGLIPVPEGLGFDEAA 2409378
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGA-RVIGICGGAEKA 119
A+ QGLTA+ ++ S G TV+VHAAAGG G L QMA+L GA RV+ EK
Sbjct: 2409377 AIPLQGLTAYLVLRDSARLAEGETVLVHAAAGGVGYLAVQMARLLGARRVVATASSPEKL 2409198
Query: 120 MLATSVGRADVVIDYV-------ATPDWPPLVR-AAAPKGVDAVYDGVG 160
+A S+G ADV+IDY WP VR A +G D + + VG
Sbjct: 2409197 EVARSLG-ADVLIDYTEEGWPESTEEGWPERVREATGGRGADVILEMVG 2409054
Score = 73.2 bits (178), Expect = 3e-11, Method: Composition-based stats.
Identities = 60/168 (35%), Positives = 80/168 (47%), Gaps = 3/168 (1%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAY---FGGVGCTGSYAAFTVVQASALLEVPDGVTDA 57
G + +G V +VGPGV E G V Y G G+YA + VV+A + P ++
Sbjct: 728625 GADVSGVVEEVGPGVEEFSPGDEVYYTPEMFGPKANGAYAEYHVVEAGIVAPKPPSLSHE 728446
Query: 58 QAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAE 117
+AAAV G TA+ + G G TV++H AGG G Q+A+ GARVI G
Sbjct: 728445 EAAAVPLAGGTAYEAIVRRLAVGVGETVLIHGGAGGVGSFAVQIARAAGARVIATAGPDN 728266
Query: 118 KAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATFA 165
+ L ADV +DY + GVDAV+D VG T A
Sbjct: 728265 QKTLEEL--GADVALDYTRDDITEAALEDTGGAGVDAVFDTVGGETVA 728128
Score = 62.8 bits (151), Expect = 4e-08, Method: Composition-based stats.
Identities = 58/181 (32%), Positives = 81/181 (44%), Gaps = 19/181 (10%)
Frame = +3
Query: 3 EGAGTVVKVGPGVSETMLGKRVA--YFG----------------GVGCTGSYAAFTVVQA 44
+GAG VV+ GPG + G RVA +F G G A V++
Sbjct: 261384 DGAGEVVETGPGATRFGAGDRVAGAFFQRWVDGPLDEEKAASALGGAVDGVLAERVVLEE 261563
Query: 45 SALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKL 104
+ + VPD ++ +AAA+ C G+TA + + PG TV+ GG + Q AK+
Sbjct: 261564 AGAVRVPDHLSFEEAAALPCAGVTAWVGLFALGRLRPGETVLA-MGTGGVSIFALQFAKM 261740
Query: 105 RGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRA-AAPKGVDAVYDGVGQAT 163
GARVI EK +G AD I+Y TPDW R +GVD + + G T
Sbjct: 261741 AGARVILTSSSDEKLERGRELG-ADETINYRETPDWDLRARELTGGRGVDHILEVGGAGT 261917
Query: 164 F 164
Sbjct: 261918 L 261920
Score = 61.6 bits (148), Expect = 7e-08, Method: Composition-based stats.
Identities = 55/164 (33%), Positives = 78/164 (47%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V++ GP G+ VA G++A V A+ L VP+ + +AA
Sbjct: 974970 GAEAAGRVLEAGPQTGLEPGGRVVAL---TRPRGAFAERVAVPATGLFPVPEEMPPEKAA 974800
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A+ TAH+ + G TV+VHA AGG G Q+A+ GARVI G EK
Sbjct: 974799 ALPIVYQTAHFALHRRAGLEAGETVLVHAGAGGVGSAAIQLARAAGARVIATAGSEEKLR 974620
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
+ +G A++ +DY + A +G D V+D VG F
Sbjct: 974619 ICRGLG-AELALDYRRQDVIGAVKEATGGRGADVVFDPVGGDVF 974491
Score = 52.8 bits (125), Expect = 4e-05, Method: Composition-based stats.
Identities = 51/165 (30%), Positives = 76/165 (46%), Gaps = 17/165 (10%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRV-----------------AYFGGVGCTGSYAAFTVVQ 43
G + AG + +VG GV + +G+RV A G G +A + V
Sbjct: 1583518 GMDIAGRIAEVGEGVPRSRIGERVLVDFVLRSGEGDEGLVEADLVGSERDGGFAEYVAVP 1583697
Query: 44 ASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAK 103
A+ + V ++D + A LTA ++++ + T+ V A+GG G + Q+A+
Sbjct: 1583698 ATNAVAVESPLSDEELATFPTAYLTAEHMLNRA-SVAEDETIFVTGASGGVGSALLQLAR 1583874
Query: 104 LRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAA 148
LRGARVI + GA K A +G VV TPD P V AA
Sbjct: 1583875 LRGARVIALV-GAGKENKAYELGAESVVTR--GTPDLPAAVAKAA 1584000
Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 39/131 (29%), Positives = 57/131 (43%)
Frame = +1
Query: 34 GSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGG 93
G++A V + P +T QAAA LTA+ + + G TVV+ A GG
Sbjct: 2091925 GTFAQLVKVPTENVFRKPAHLTHEQAAAFPLAALTAYRALVTRGGVREGETVVITGAGGG 2092104
Query: 94 TGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVD 153
+ Q+A GARV G EK A +G A+ ++Y + +W ++ G D
Sbjct: 2092105 VATFLVQLAHALGARVFVTSGSDEKLRKARELG-AEGGVNY-RSENWARELKELTGGGAD 2092278
Query: 154 AVYDGVGQATF 164
D VG F
Sbjct: 2092279 LSVDSVGGEVF 2092311
Score = 38.1 bits (87), Expect = 1.1, Method: Composition-based stats.
Identities = 43/135 (31%), Positives = 57/135 (42%), Gaps = 25/135 (18%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGC------------------------TGSY 36
G E AGTV +GPGV G RV GC G
Sbjct: 1613949 GHEFAGTVEALGPGVERVAPGDRVVAVAIQGCGRCELCLAGLTQLCPDRVAVGLSRDGGM 1614128
Query: 37 AAFTVVQASALLEVPDGVTDAQAAAVLCQGLT-AHYLVDSSYPCGPGSTVVVHAAAGGTG 95
A + V+ L+ VP+G+ AA LC+ L+ A VD+ P VVV + G G
Sbjct: 1614129 AEYAVMPEGHLVSVPEGLDLTLAA--LCEPLSVAVRAVDARAGIAPEGKVVV-SGPGPIG 1614299
Query: 96 LLVCQMAKLRGARVI 110
+L +A+LRGA V+
Sbjct: 1614300 ILCAMVARLRGADVL 1614344
>ref|XM_748413.1| Aspergillus fumigatus Af293 quinone oxidoreductase (AFUA_5G11430),
partial mRNA
Length = 1149
Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats.
Identities = 73/169 (43%), Positives = 95/169 (56%), Gaps = 5/169 (2%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSET--MLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQ 58
G EGAGTVV +GPG + +G RVA+ TG YA +T V A+ +++PDG++D
Sbjct: 349 GREGAGTVVALGPGPNHYNFQVGDRVAWLS----TGGYAEYTAVPAAKAVKIPDGISDED 516
Query: 59 AAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEK 118
A GLT L +Y G V++HAAAGG G L+ Q+ K GA VIG GG EK
Sbjct: 517 VMASFLSGLTVLSLAKETYAVQKGDWVLLHAAAGGAGFLMTQILKSIGAHVIGTAGGPEK 696
Query: 119 AMLATSVGRADVVIDYVAT--PDWPPLVRA-AAPKGVDAVYDGVGQATF 164
L +G AD VIDY + DW V+ +GVD VYD VG+ T+
Sbjct: 697 VELVKGLG-ADHVIDYRSEEGKDWVKQVKEITGGRGVDVVYDSVGKDTW 840
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
Length = 5513844
Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats.
Identities = 70/164 (42%), Positives = 94/164 (57%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG VV VGPGV+ G RVAY+ +G +YA + A L+++PD +T Q A
Sbjct: 2853322 GNEAAGEVVAVGPGVTNFHPGDRVAYYYNLG---AYATERNIPADKLVKLPDHITYEQGA 2853492
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
++ +GLT YL+ ++ PG V++HAAAGG GLL CQ AK GA VIG G KA
Sbjct: 2853493 VLMLKGLTVWYLLHKTFKVEPGHRVLIHAAAGGIGLLACQWAKALGANVIGTVGSKAKAD 2853672
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
+A + G D VI Y + + + + D VYDGVG+ TF
Sbjct: 2853673 IALAAG-CDHVIIYTQEDFVARIKQISRNELCDVVYDGVGKTTF 2853801
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 55/189 (29%), Positives = 78/189 (41%), Gaps = 25/189 (13%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGC----------------TGSYAAFTV--- 41
G E AG + VG GVS +G++VA +G + C G F V
Sbjct: 2309384 GAEAAGVIAAVGDGVSRFKVGQKVAMYGALTCGHCKPCVEGRDNFCENVGGLIGFHVDGF 2309205
Query: 42 ------VQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTG 95
+ ++ VPD V+ AA T +++ + PG T++VHA G G
Sbjct: 2309204 ARELLNMPERLVIPVPDNVSVRDAACAPIAFSTVQHMLFDNAKLQPGETILVHAGGSGIG 2309025
Query: 96 LLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAV 155
+ MAK G VI G K ++G AD VI+Y + KGVD V
Sbjct: 2309024 TVAIMMAKAIGCTVITTVGDDSKIEGVKALG-ADHVINYRNDRFEHETRKITKKKGVDVV 2308848
Query: 156 YDGVGQATF 164
++ VG TF
Sbjct: 2308847 FEHVGADTF 2308821
Score = 59.7 bits (143), Expect = 3e-07, Method: Composition-based stats.
Identities = 54/167 (32%), Positives = 84/167 (50%), Gaps = 2/167 (1%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGV-SETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQA 59
G EGAGTV+K G V ++T+LGK VA GG YA + +++A+ L +P G T A+
Sbjct: 2693442 GNEGAGTVIKAGNAVAAQTLLGKTVAMIGG----AMYAQYRLIKAADCLLLPIGTTAAEG 2693609
Query: 60 AAVLCQGLTAHYLVDSSYPCGPGSTVVVH-AAAGGTGLLVCQMAKLRGARVIGICGGAEK 118
A+ LTA +V++ G T +VH AAA G ++ ++ G ++ I A++
Sbjct: 2693610 ASCFVNPLTALGMVETMRR--EGHTALVHTAAASNLGQMLNRICLKDGIELVNIVRSAQQ 2693783
Query: 119 AMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATFA 165
A L +G A + D A L +A + G +D +G A
Sbjct: 2693784 AKLLRDLG-AKHICDSSAPDFLEQLTQALSDTGATIAFDAIGGGPLA 2693921
Score = 55.8 bits (133), Expect = 4e-06, Method: Composition-based stats.
Identities = 55/181 (30%), Positives = 84/181 (46%), Gaps = 17/181 (9%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRV-------AYFGGVGCT--GSYAAFTVVQASALLEVP 51
G + G + ++G GV LG RV G +G T G A + +A L+++P
Sbjct: 3255296 GLDVVGEISELGAGVEGWKLGDRVLIDPVNRVEGGLMGETQDGGLAEYCRAKAHQLVKIP 3255117
Query: 52 DGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIG 111
D VT QAAA+ TA ++++ G V++ A+GG G+ Q+AKL GA VI
Sbjct: 3255116 DAVTFEQAAALPVAYGTAIRMMNTIGKIKAGEKVLILGASGGVGVCCVQLAKLAGAYVIA 3254937
Query: 112 ICGGAEKAMLATSVGRADVVI----DYVAT----PDWPPLVRAAAPKGVDAVYDGVGQAT 163
G EK T +G ++++ D++ T P R GVD V + G T
Sbjct: 3254936 CAGSEEKGRRLTELGADEIILYTQADFMKTVFERHGKPHRRRFVESGGVDVVVNFTGGDT 3254757
Query: 164 F 164
+
Sbjct: 3254756 W 3254754
Score = 55.5 bits (132), Expect = 5e-06, Method: Composition-based stats.
Identities = 44/137 (32%), Positives = 64/137 (46%)
Frame = -2
Query: 29 GVGCTGSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVH 88
G C G+ A + V A LE+PD + AQ AA+ LTA ++ + PG TV+V
Sbjct: 1131155 GEHCNGTMAEYVSVPAGNALEIPDALDFAQGAALGVNYLTAWRMLFNKANLQPGETVLVF 1130976
Query: 89 AAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAA 148
GG L Q+AK GARV AEKA A ++G + ++
Sbjct: 1130975 GIGGGVSLAALQIAKAAGARVFVTSRSAEKAAHARALGADAAIDAPADKIP-AAVMELTG 1130799
Query: 149 PKGVDAVYDGVGQATFA 165
+GVD V + +G A ++
Sbjct: 1130798 GRGVDVVIENIGGAIWS 1130748
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 52/159 (32%), Positives = 78/159 (49%), Gaps = 1/159 (0%)
Frame = +2
Query: 3 EGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVT-DAQAAA 61
E AG + +G GVS+ +G RV G A + A +++++PD + D A
Sbjct: 42644 EVAGVIESLGDGVSDLKVGDRVVASCGFNGARDKIA---LPAQSIVKIPDNLDFDRAAGI 42814
Query: 62 VLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAML 121
++ G H L D ++P PG T+ V AAGGTGL C++ KL G +VI K
Sbjct: 42815 IITYGTALHALEDRAHP-KPGETLAVLGAAGGTGLAACELGKLMGLKVIACASSDAKLDF 42991
Query: 122 ATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
A G A++ ++Y A L R +G D ++D VG
Sbjct: 42992 AKQHG-AELTLNYAAEDLKDGLKRLTEGRGADIIFDPVG 43105
Score = 48.1 bits (113), Expect = 9e-04, Method: Composition-based stats.
Identities = 43/145 (29%), Positives = 67/145 (46%), Gaps = 1/145 (0%)
Frame = +2
Query: 14 GVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLV 73
GV G+RV + GS A TVV+ + + +PD + D AAA+ G+++ +
Sbjct: 4545974 GVGRLEDGRRVYFVLPRAPFGSMAERTVVRTAQCIALPDDLDDVTAAALANPGMSSWAAL 4546153
Query: 74 DSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVID 133
PG TV+++ A G +G L Q+AK GA + G +A+ + + ADV I
Sbjct: 4546154 KERAKLKPGETVLINGATGTSGRLAVQIAKHLGAGKVIATGRDAEALQSLAALGADVTIT 4546333
Query: 134 YVATP-DWPPLVRAAAPKGVDAVYD 157
+ D + GVD V D
Sbjct: 4546334 LLDDQRDMEAAFQQQFADGVDVVLD 4546408
Score = 43.9 bits (102), Expect = 0.016, Method: Composition-based stats.
Identities = 45/166 (27%), Positives = 74/166 (44%), Gaps = 13/166 (7%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G + AG V VGP V+ G V Y G + G+ + F +V + P ++ AQAA
Sbjct: 3806969 GYDAAGIVDAVGPEVTLFKPGDEVWYAGSIVRPGTNSEFHLVDERIVGNKPATLSFAQAA 3807148
Query: 61 AVLCQGLTAHYLVDSSYPCGPGS-----TVVVHAAAGGTGLLVCQMA-KLRGARVIGICG 114
A+ +TA L+ PG T+++ AGG G ++ Q+A +L G V+
Sbjct: 3807149 ALPLTSITAWELLFDRLGVAPGKSFDPRTLLIVGGAGGVGSILIQLARRLTGLTVVATAS 3807328
Query: 115 GAEKAMLATSVGRADVVIDY-------VATPDWPPLVRAAAPKGVD 153
+ + +G A V+D+ +A PP+ A+ G +
Sbjct: 3807329 RPQSSQWCLQLG-AHHVVDHSKPLPAQIAALKLPPVALIASLTGTE 3807463
Score = 43.5 bits (101), Expect = 0.024, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 36/65 (55%)
Frame = -2
Query: 100 QMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGV 159
Q+A+++GA +GI GG EK + D +D+ PD ++ A PKG+D ++ V
Sbjct: 3400817 QIARIKGAHAVGIAGGREKCDYVVNELGFDACLDH-REPDLAARLKEACPKGIDVYFENV 3400641
Query: 160 GQATF 164
G A F
Sbjct: 3400640 GGAVF 3400626
>gb|CP000781.1| Xanthobacter autotrophicus Py2, complete genome
Length = 5308934
Score = 111 bits (278), Expect = 7e-23, Method: Composition-based stats.
Identities = 75/164 (45%), Positives = 95/164 (57%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G EGAG V VGP V++ G RVAY +G +YA V A+ LL +P + D AA
Sbjct: 4291068 GNEGAGVVEAVGPDVNDFHPGDRVAYASAIG---AYAEVRNVPAAVLLHLPASIDDQTAA 4290898
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A++ +G+TA YLV ++ PG ++V AAAGG GL++CQ AK GA VIG G +KA
Sbjct: 4290897 AMMLKGMTAQYLVRRTHHIKPGDVILVQAAAGGVGLILCQWAKHLGATVIGTVGSKDKAE 4290718
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
LA S G D VI Y + A K D VYDGVGQAT+
Sbjct: 4290717 LALSHG-CDEVILYRDEDFVHRVKEITAGKLCDVVYDGVGQATY 4290589
Score = 83.6 bits (205), Expect = 2e-14, Method: Composition-based stats.
Identities = 72/160 (45%), Positives = 91/160 (56%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V +VGPGV+ G RVAY G GSYA+ V+ +AL+++PD ++ AA
Sbjct: 1918564 GVEAAGVVEEVGPGVTRLRAGDRVAYAGPP--VGSYASARVLPEAALVKLPDAISFEAAA 1918391
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A++ QG+TAH L G TV+VHAAAGG GLL+ Q AK GARVIG G KA
Sbjct: 1918390 ALMLQGMTAHMLFTRVRRVAAGDTVLVHAAAGGLGLLLVQWAKALGARVIGTVGSPTKAE 1918211
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
A G DV++ Y R GVD VY+G+G
Sbjct: 1918210 HALRAGCCDVIL-YKEQDFATETRRLTDGAGVDVVYEGLG 1918094
Score = 62.0 bits (149), Expect = 6e-08, Method: Composition-based stats.
Identities = 53/160 (33%), Positives = 76/160 (47%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V +G GV+ +G+RV G G+ VV+A L VPD + +AA
Sbjct: 436861 GAEFAGHVAALGAGVTGFAVGERVC---GYVTHGAAREKVVVEARFLARVPDDLDLVKAA 437031
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
++ T+ Y + G ++ V A+GG GL ++ ++ GAR++ AEK
Sbjct: 437032 GLIVTYGTSLYALRERGNLKAGESLAVLGASGGVGLAAVELGRIMGARILACASSAEKVA 437211
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
A + G AD DY L PKG+D VYD VG
Sbjct: 437212 FAKAHG-ADEGFDYAEGDLKGALKAFGGPKGLDMVYDPVG 437328
Score = 59.3 bits (142), Expect = 4e-07, Method: Composition-based stats.
Identities = 51/161 (31%), Positives = 79/161 (49%), Gaps = 1/161 (0%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AGTVV +G G S LG RV + G YA + + L +P+G++ A+AA
Sbjct: 938870 GLEIAGTVVALGEGASRFKLGDRVC---ALVTGGGYAQYCTTHEATALPIPEGLSAAEAA 938700
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A+ T + G T+++H + G G Q+AK GARV+ G EK
Sbjct: 938699 ALPETAFTVWSNIFERGQLKAGETLLLHGGSSGIGTTAIQLAKAFGARVVVTAGSDEKCA 938520
Query: 121 LATSVGRADVVIDYVATPDWPPLVRA-AAPKGVDAVYDGVG 160
++G AD+ ++Y T D+ V++ KG + + D +G
Sbjct: 938519 ACVALG-ADLAVNY-RTQDFVAEVKSFTGGKGANVILDMIG 938403
Score = 56.2 bits (134), Expect = 4e-06, Method: Composition-based stats.
Identities = 51/161 (31%), Positives = 75/161 (46%), Gaps = 1/161 (0%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G EGAGTV+ GP + ++G RVA GG YA ++ A L +PDG + A
Sbjct: 762241 GNEGAGTVIAAGPD-QQHLVGSRVAMLGG----AMYARLRLIAAKDCLPLPDGTSAEAGA 762077
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHA-AAGGTGLLVCQMAKLRGARVIGICGGAEKA 119
A+ LTA V++ G T +VHA AA G ++ ++ K G ++ I E+
Sbjct: 762076 ALFVNPLTALGFVETMR--AEGHTAIVHAPAASNLGQMLVRICKADGIGLVNIVRSPEQV 761903
Query: 120 MLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
L +G A+ +D A L A A G +D +G
Sbjct: 761902 ALLRGLG-AEHAVDSSAETFREDLTEAIAATGATLSFDAIG 761783
Score = 55.8 bits (133), Expect = 5e-06, Method: Composition-based stats.
Identities = 59/160 (36%), Positives = 74/160 (46%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AGTVV+ GP S G R+ G +AA + A L PD +A
Sbjct: 4511049 GIEVAGTVVEAGPN-SPFRPGDRLCALMDHGGFAEHAAVPALGAQKL---PDDFPLREAV 4510882
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A+ TAH + G TV+VHA AGG G Q+A+ GARVI GG +K
Sbjct: 4510881 ALPVIYPTAHLALRHRAGLKAGETVLVHAGAGGVGSAAIQLARHWGARVIATAGGPQKTA 4510702
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
L +G AD IDY A P + +GVD + D VG
Sbjct: 4510701 LCHELG-ADETIDYAAEPLVERVKEITHGRGVDVIVDPVG 4510585
Score = 55.5 bits (132), Expect = 6e-06, Method: Composition-based stats.
Identities = 52/163 (31%), Positives = 72/163 (44%), Gaps = 1/163 (0%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AGTV G G++ +G RV G G F A L+ VPD V AA
Sbjct: 402286 GLEFAGTVRSTGEGITGFKVGDRVMGMG----KGFLRRFAAADARFLMHVPDDVALEDAA 402119
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+ +TAHY + P V+VH A GG GL Q+A+ GA ++ G K
Sbjct: 402118 TLPAAFMTAHYSLVDIGRLEPDEKVLVHLATGGVGLAAIQVARDIGAEILASAGSDTKRN 401939
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAA-APKGVDAVYDGVGQA 162
+G V+ + ++ VRAA +GVD V + + A
Sbjct: 401938 FLRQLGIEHVMNS--RSLEFSEAVRAATGGRGVDVVLNALSGA 401816
Score = 52.0 bits (123), Expect = 6e-05, Method: Composition-based stats.
Identities = 56/193 (29%), Positives = 82/193 (42%), Gaps = 29/193 (15%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGC----------------TGSYAAFTV--- 41
G E AG +V +G V +G+ VA +G + C G F +
Sbjct: 1448384 GAEAAGEIVALGADVRGLKVGQTVAMYGAMTCGHCVNCLKGRDNLCQNVGGVLGFHIDGF 1448205
Query: 42 ------VQASALLEVPDGVTDAQAAAVLCQGLT----AHYLVDSSYPCGPGSTVVVHAAA 91
+ ++ P+GV+ AA C G+T H L D++ G TV+VHA
Sbjct: 1448204 ARDVINMPERLVIPAPEGVSFEDAA---CAGITFSTVEHMLFDNA-QLEQGETVLVHAGG 1448037
Query: 92 GGTGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKG 151
G G ++AK GA VI G EK A ++G AD VI+Y + + G
Sbjct: 1448036 SGIGSAAIRLAKDVGATVITTVGDDEKLEKAKALG-ADHVINYRKDRFEHEVRKITKKVG 1447860
Query: 152 VDAVYDGVGQATF 164
VD V++ VG T+
Sbjct: 1447859 VDVVFEHVGADTW 1447821
Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 2/105 (1%)
Frame = -1
Query: 29 GVGCTGSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDS--SYPCGPGSTVV 86
G +G +A V+ L+++P+G++ QA A+ GLTA VD+ Y G V+
Sbjct: 3725369 GENWSGGFAQRARVKGEWLVKLPEGLSSRQAMAIGTAGLTAMLCVDALERYGIAAGGNVL 3725190
Query: 87 VHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVV 131
V AAGG G + ++ G +V + G + S+G D+V
Sbjct: 3725189 VTGAAGGVGSVAVRLLSRLGYKVSALTGRRSEEDFLKSIGATDIV 3725055
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 32/89 (35%), Positives = 48/89 (53%)
Frame = +2
Query: 29 GVGCTGSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVH 88
G+ G++A VV+A AL+E P+G++ +AA + +TA + PG TV+V
Sbjct: 5263682 GIRRDGTHATHLVVEADALVEKPEGISLQEAAGIGVPFVTAIEGFRRAGLPRPGETVLVL 5263861
Query: 89 AAAGGTGLLVCQMAKLRGARVIGICGGAE 117
G G Q+A RGARV+G+ AE
Sbjct: 5263862 GVNGKVGQAAAQIATWRGARVVGVVRKAE 5263948
Score = 45.8 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 42/154 (27%), Positives = 65/154 (42%), Gaps = 23/154 (14%)
Frame = -3
Query: 34 GSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYP--CGPGSTVVVHAAA 91
GS+A F VQA L+ P +T ++A TA+ ++ P PG V+V A+
Sbjct: 1374891 GSFAQFCRVQARQLMPRPKHLTWEESACYTLTMATAYRMLFGHPPHTVKPGDYVLVWGAS 1374712
Query: 92 GGTGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVV----------IDYVATPDWP 141
GG G+ Q+A GA VIG+ K +G V+ + V +P++
Sbjct: 1374711 GGLGVFGVQLAAASGAHVIGVISDETKRDYVLGLGAKGVINRKDFKCWGQLPKVNSPEYN 1374532
Query: 142 PLVRAAAPKG-----------VDAVYDGVGQATF 164
+ A G VD V++ G+ TF
Sbjct: 1374531 EWTKEARKFGKAIWDISGKRDVDIVFEHPGEQTF 1374430
Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats.
Identities = 42/160 (26%), Positives = 76/160 (47%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E +G V++VGPGV+ G V G++A+ + A+ + +VP G+ +AA
Sbjct: 1153240 GGECSGRVLRVGPGVTGLAPGDAVVAMH----FGTFASHVTLPAAVVFKVPKGMGVVEAA 1153407
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+ LT Y + G V++H+A+GG G+ ++A++ GA + K
Sbjct: 1153408 GLPIVYLTTWYGLHHLAGIKAGDRVLIHSASGGVGIAAIRVAQMVGAEIFAT-ASLHKHD 1153584
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
S+G +++ T ++R +GVD V + +G
Sbjct: 1153585 FLRSLGVTH-IMNSRDTAFADEIMRLTGGRGVDIVLNSLG 1153701
Score = 44.7 bits (104), Expect = 0.011, Method: Composition-based stats.
Identities = 47/126 (37%), Positives = 60/126 (47%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AGTVV+VG V+ +G V F ++A V A PDG+ AA
Sbjct: 4213677 GFECAGTVVRVGADVAALKVGDGVMGFA----PDAFATHVTVPAWYAFRAPDGLALEAAA 4213510
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A+ TA Y + PG V++H AAGG GL +A RGARVI G KA
Sbjct: 4213509 ALPVAFATAWYGLVDCARLAPGELVLIHGAAGGVGLAAVNIALARGARVIATAGTPSKAA 4213330
Query: 121 LATSVG 126
L ++G
Sbjct: 4213329 LLRALG 4213312
Score = 44.7 bits (104), Expect = 0.011, Method: Composition-based stats.
Identities = 50/185 (27%), Positives = 75/185 (40%), Gaps = 28/185 (15%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G + GTV VGP V+ G V Y G + G+ + V + P +TDA+AA
Sbjct: 3053715 GYDAVGTVEAVGPQVTLFRPGDEVFYAGSIDRPGTNSVLHAVDERIVGRKPTTLTDAEAA 3053894
Query: 61 AVLCQGLTAHYLVDS--SYPCG---PGSTVVVHAAAGGTGLLVCQMA-KLRGARVIGICG 114
A+ +TA L+ P G G +++ AGG G ++ Q+A +L G VI
Sbjct: 3053895 ALPLTAITAWELLFDRLGLPYGVKTQGGAILIVNGAGGVGSILIQLARRLTGLTVIATAS 3054074
Query: 115 GAEKAMLATSVGRADVV-----------------IDYVAT-----PDWPPLVRAAAPKGV 152
E +G V+ + YVA+ P + A AP+G
Sbjct: 3054075 RPETIQWCKDMGAHHVIDHRQPLDEGLKAIGIPQVQYVASLTATDQHLPAIANALAPQGA 3054254
Query: 153 DAVYD 157
A+ D
Sbjct: 3054255 LALID 3054269
Score = 37.4 bits (85), Expect = 1.7, Method: Composition-based stats.
Identities = 39/117 (33%), Positives = 57/117 (48%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E +G + VGPGV L + G+ GS A V A+ ++ P+G++ AA
Sbjct: 1133218 GLECSGVIAAVGPGVEG--LAVNMPVMAGL-TVGSLAGRVRVPAAFVVPKPEGLSFRDAA 1133388
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAE 117
+ LTAHY +D G V++HAAAGG G Q+A+ GA + A+
Sbjct: 1133389 TLPLAFLTAHYALDRLAGLKRGERVLIHAAAGGVGQAAIQVAQRAGAEIFATASPAK 1133559
Score = 37.0 bits (84), Expect = 1.9, Method: Composition-based stats.
Identities = 41/135 (30%), Positives = 55/135 (40%), Gaps = 25/135 (18%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVA----------YFGGVGCT---------------GS 35
G E GTVV VG V+ +G RV+ YFG G G
Sbjct: 4469565 GHEYGGTVVAVGSSVTNVAVGDRVSVQPMVSPRDDYFGQRGLYQLSESLAIIGLAWPWGG 4469386
Query: 36 YAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTG 95
A +++V + VPD V+DAQAA + +T + PG +V+V AG G
Sbjct: 4469385 MAEYSLVNDYNVFRVPDSVSDAQAALIEPTAVTVYAAERGGVK--PGDSVLV-TGAGPIG 4469215
Query: 96 LLVCQMAKLRGARVI 110
L A+ GA I
Sbjct: 4469214 QLQVLAARAAGATRI 4469170
>gb|CP001029.1| Methylobacterium populi BJ001, complete genome
Length = 5800441
Score = 111 bits (278), Expect = 8e-23, Method: Composition-based stats.
Identities = 76/164 (46%), Positives = 98/164 (59%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G+EGAG V +G GV++ +G+RVAY G TG+YA VV + ++ VP ++D AA
Sbjct: 4669441 GKEGAGVVDALGEGVTDFRVGERVAY---AGATGTYAEEVVVDSKGVVHVPASISDETAA 4669611
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A++ +GLTA YL+ +Y PG T++ HAAAGG GL+ Q AK GA VIG G EKA
Sbjct: 4669612 AMMLKGLTAQYLLRRTYRVQPGDTILFHAAAGGVGLIATQWAKHLGATVIGTVGSQEKAE 4669791
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
LA G D VI Y + KGV VYDGVG+ATF
Sbjct: 4669792 LAREHG-CDHVILYRNEDFAARVKEITGGKGVPVVYDGVGKATF 4669920
Score = 67.0 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 60/161 (37%), Positives = 74/161 (45%), Gaps = 1/161 (0%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E G + +G +G RV G A V L VPD V+D AA
Sbjct: 954224 GGEACGVIEALGSDAEGFSVGDRVMVHLSHGTARERIA---VPVKRLARVPDAVSDETAA 954394
Query: 61 AV-LCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKA 119
+ + G T H L D + PG T+VV A+GG GL ++ KL GARVI EK
Sbjct: 954395 GLSITYGTTLHALRDRA-DIKPGETLVVLGASGGVGLAAVELGKLLGARVIACASSPEKL 954571
Query: 120 MLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
A + G AD +IDY A L R +GVD VYD VG
Sbjct: 954572 ETARAHG-ADELIDYKADNLREELRRLTGERGVDVVYDAVG 954691
Score = 63.2 bits (152), Expect = 3e-08, Method: Composition-based stats.
Identities = 51/162 (31%), Positives = 76/162 (46%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG + ++G GV+ G V + +G YA F V +A +L+ P+ ++ +AA
Sbjct: 1830445 GLEIAGRIAELGEGVTGFSEGDEVC---ALVISGGYAEFAVAEAGQVLKRPEPLSLVEAA 1830615
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+ T + V G T +VH + G G Q+AK GARV+ G AEK
Sbjct: 1830616 GLPETTFTVYSTVIQRGRLKKGETFLVHGGSSGIGTTAIQIAKQHGARVLTTAGSAEKCR 1830795
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQA 162
+G AD I+Y + + R +GVD + D VG A
Sbjct: 1830796 FCEELG-ADAAINYRESDFAEEVKRLTDGRGVDVILDMVGAA 1830918
Score = 56.2 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 59/161 (36%), Positives = 82/161 (50%), Gaps = 5/161 (3%)
Frame = -3
Query: 9 VKVGPGVSETMLGKRVAYFGG--VGCTGSYAAFTVVQASAL--LEVPDGVTDAQAAAVLC 64
V VG VSE + + A+ G V + FTV S L ++ DG +
Sbjct: 2357663 VMVGQTVSEVVASENPAFAEGDLVLANAGWQEFTVSDGSGLRRIDPADGAPSQFLGILGM 2357484
Query: 65 QGLTAHY-LVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLAT 123
G+TA+ L++ P P TVVV AAAG G LV Q+A+++GAR +GI GGAEK T
Sbjct: 2357483 PGMTAYTGLLEIGRP-QPKETVVVAAAAGPVGSLVGQIARIKGARAVGIAGGAEKCAYLT 2357307
Query: 124 SVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
D +D+ A D+P + A P G+D ++ VG A F
Sbjct: 2357306 ETLGFDAAVDHRAN-DFPDALARACPDGIDVYFENVGGAVF 2357187
Score = 49.3 bits (116), Expect = 4e-04, Method: Composition-based stats.
Identities = 52/181 (28%), Positives = 73/181 (40%), Gaps = 19/181 (10%)
Frame = -1
Query: 3 EGAGTVVKVGPGVSETMLGKRVA------YFGGV------------GCTGSYAAFTVVQA 44
+GAG +V +G GV G+RVA + GG G + V
Sbjct: 3569521 DGAGEIVALGEGVRRFRGGERVAGIFSQSWLGGAQVADTWQTALGGAIDGVLTEYRVFDE 3569342
Query: 45 SALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKL 104
L+ +PD ++ + A + C +TA + P G TV+ GG + Q+A
Sbjct: 3569341 DGLVTLPDHLSFEEGATLPCAAVTAWNALYGLKPLRAGETVLT-LGTGGVSIFAIQLAHA 3569165
Query: 105 RGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRA-AAPKGVDAVYDGVGQAT 163
GARVI K A ++G D I+Y PDW VR GVD V + G T
Sbjct: 3569164 AGARVIATSSSDAKLERARALGAHD-TINYRTHPDWEGEVRRLTGGVGVDHVVEVGGTGT 3568988
Query: 164 F 164
Sbjct: 3568987 L 3568985
Score = 48.9 bits (115), Expect = 5e-04, Method: Composition-based stats.
Identities = 42/122 (34%), Positives = 59/122 (48%), Gaps = 1/122 (0%)
Frame = -2
Query: 44 ASALLEVPDGVTDAQAA-AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMA 102
A +++VP GV QAA A + G H L D++ PG +++V A G G +MA
Sbjct: 5416272 ARLVVKVPGGVDHVQAACAGIAFGTVQHMLFDNAR-LEPGESILVQAGGSGIGTAAIKMA 5416096
Query: 103 KLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQA 162
K G V G K A ++G AD VI+Y + R KGVD V++ VG
Sbjct: 5416095 KAIGCTVYTTVGDDAKGEKARALG-ADHVINYREERFEGEVRRLTKRKGVDVVFEHVGPE 5415919
Query: 163 TF 164
T+
Sbjct: 5415918 TW 5415913
Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats.
Identities = 40/155 (25%), Positives = 66/155 (42%), Gaps = 24/155 (15%)
Frame = -2
Query: 34 GSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYP--CGPGSTVVVHAAA 91
GS+A F VQ+ L++ P +T +AA TA+ ++ P PG V++ A+
Sbjct: 387033 GSFAQFCRVQSRQLMQRPKHLTWEEAACYTLTLATAYRMLFGHAPHTVRPGQNVLIWGAS 386854
Query: 92 GGTGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVV----------IDYVATPDWP 141
GG G+ Q+ GA I + K S+G V+ + V +P++
Sbjct: 386853 GGLGVFGVQLCAASGANAIAVISDESKRDYVMSLGAKGVINRKDFDCWGQLPKVNSPEYN 386674
Query: 142 PLVRAAAPKG------------VDAVYDGVGQATF 164
++ A G VD V++ G+ATF
Sbjct: 386673 TWLKEARKFGKAIWDITGKGNDVDIVFEHPGEATF 386569
Score = 40.4 bits (93), Expect = 0.18, Method: Composition-based stats.
Identities = 48/133 (36%), Positives = 67/133 (50%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E +G V +G GV + +G V F G +A VV + +P G+ A AA
Sbjct: 1979784 GLEVSGRVTAIGAGVVDFAVGDAVVAFAQSG----FATHVVVPEMVVAPMPAGLDPAAAA 1979617
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
V LTA+Y + + G ++VH AGG GL Q+AK +GARVI G EK
Sbjct: 1979616 TVPVAFLTAYYALCTCARLRKGEWLLVHGGAGGVGLAALQIAKWKGARVIATAGSREKRA 1979437
Query: 121 LATSVGRADVVID 133
L ++G A+ V+D
Sbjct: 1979436 LVAALG-AEHVLD 1979401
>gb|CP000390.1| Mesorhizobium sp. BNC1, complete genome
Length = 4412446
Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats.
Identities = 73/164 (44%), Positives = 96/164 (58%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V++VG GV + G RVAY G G+YA +V+A L+ VPD V+D QAA
Sbjct: 1812558 GSEAAGVVLEVGEGVEDLKPGDRVAYCVATG--GAYAEQRLVRADRLVRVPDAVSDEQAA 1812385
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+ + +GLTA YL+ ++P G T++ HAAAGG GL++ Q AK GA+VIG G EK
Sbjct: 1812384 SAMLKGLTAWYLLRRTFPVKAGDTILCHAAAGGVGLVLGQWAKHLGAKVIGTAGSPEKVE 1812205
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
LA + G D VIDY + + D VYD VG+ TF
Sbjct: 1812204 LAKAHGY-DHVIDYTKEDFVAAVGELTSGGKCDVVYDSVGKDTF 1812076
Score = 58.9 bits (141), Expect = 5e-07, Method: Composition-based stats.
Identities = 59/191 (30%), Positives = 84/191 (43%), Gaps = 26/191 (13%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGC----------------TGSYAAFTV--- 41
G E +G V VGPGVS + G+ V+ +G C G F +
Sbjct: 1408327 GAEASGRVDAVGPGVSNLVPGQLVSIYGARTCGLCRPCREGRDNLCEHVGGVHGFHLDGF 1408148
Query: 42 ------VQASALLEVPDGVTDAQAA-AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGT 94
+ A L+ P GV + AA A + G H L D++ PG T++VHA G
Sbjct: 1408147 AQEKINLPARLLVPAPPGVDEIGAAVAPVSFGTVEHMLFDNA-KLEPGETILVHAGGSGI 1407971
Query: 95 GLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDA 154
G Q+AK G V+ G EK A ++G AD VI+Y + + +GVD
Sbjct: 1407970 GSAAIQLAKRMGCTVLTTVGSNEKIERAKALG-ADHVINYREDRFEGAVRKITKKRGVDV 1407794
Query: 155 VYDGVGQATFA 165
V++ VG T+A
Sbjct: 1407793 VFEHVGADTWA 1407761
Score = 56.2 bits (134), Expect = 4e-06, Method: Composition-based stats.
Identities = 52/160 (32%), Positives = 68/160 (42%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E +G V G GV +G V + G YA F VV + L +P G T +AA
Sbjct: 3683732 GLEVSGIVAATGEGVERWHVGDEVT---ALTPGGGYAEFCVVHETNALPIPHGFTFTEAA 3683562
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A+ T + V G T++VH G G Q+A GARVI G AEK
Sbjct: 3683561 ALPETFFTVWHNVFERGGLKAGETLLVHGGTSGIGTTAIQVASNFGARVIATAGSAEKCE 3683382
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
+G A V +Y A + A +G D + D VG
Sbjct: 3683381 ACLKLGAARAV-NYRAEDFVLAVKEATEGRGADVILDMVG 3683265
Score = 51.6 bits (122), Expect = 8e-05, Method: Composition-based stats.
Identities = 48/172 (27%), Positives = 78/172 (45%), Gaps = 13/172 (7%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFG-------------GVGCTGSYAAFTVVQASAL 47
G + +G VV+ G VS+ G VA GV G YA + V A++
Sbjct: 3187242 GVDPSGVVVETGAEVSDFKPGDPVAVSSRIRYEPEDVPRMLGVDLWGGYAEYVCVPAASA 3187063
Query: 48 LEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGA 107
+P G+ A A+ + A +++++ PG V+V A+GG G Q+A+ GA
Sbjct: 3187062 FPLPAGLDFATASIAIRHVPQAFHMLETKAKLQPGEWVLVMGASGGLGSASVQVARHLGA 3186883
Query: 108 RVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGV 159
RVI G E+ A ++G + I+Y + ++R GVD V + +
Sbjct: 3186882 RVIVAAGADERVSAAMALG-GEFGINYRSQDLHAEVMRITGNAGVDVVCENI 3186730
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 44/129 (34%), Positives = 60/129 (46%), Gaps = 1/129 (0%)
Frame = -3
Query: 6 GTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAAAVLCQ 65
G V VGP V++ +LG+RV G++A V A P+ V AA+
Sbjct: 3206840 GRVSAVGPEVADFVLGQRVLALPDGAHAGTHAEKARVPARFCFIAPEDVPSDIGAALGLA 3206661
Query: 66 GLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGAR-VIGICGGAEKAMLATS 124
TAH + PG +V+V A GG G+ Q+A+ GA VI G E +A
Sbjct: 3206660 YQTAHAALTRRALLQPGESVLVLGATGGIGMAAIQLARALGASCVIAATRGKEGTEIARE 3206481
Query: 125 VGRADVVID 133
+G AD VID
Sbjct: 3206480 MG-ADHVID 3206457
Score = 40.0 bits (92), Expect = 0.26, Method: Composition-based stats.
Identities = 48/135 (35%), Positives = 65/135 (48%), Gaps = 1/135 (0%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASA-LLEVPDGVTDAQA 59
G+E AG V++ G V+E +G R +G ++A V A + +PD V
Sbjct: 3553601 GQELAGIVIETGSDVTEFEVGDRAVSRCRLG---AFAEEAVCAADGRTVRLPDRVDFVTG 3553771
Query: 60 AAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKA 119
AA TA++ PG TV+V AAGG GL ++AKL GARVI EK
Sbjct: 3553772 AAFAATYGTAYHAFKRRASLKPGETVLVLGAAGGVGLAAVELAKLMGARVIAAASSPEKL 3553951
Query: 120 MLATSVGRADVVIDY 134
+ G AD +IDY
Sbjct: 3553952 EVCRRAG-ADELIDY 3553993
>ref|XM_001239524.1| Coccidioides immitis RS hypothetical protein (CIMG_09146) partial
mRNA
Length = 1011
Score = 111 bits (277), Expect = 9e-23, Method: Composition-based stats.
Identities = 75/170 (44%), Positives = 103/170 (60%), Gaps = 6/170 (3%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSET--MLGKRVAYFGGVGCTGSYAAFTVVQASA-LLEVPDGVTDA 57
G EGAG +V +G G + +G RVA+ TG YA ++V QA ++ +P+G++D
Sbjct: 208 GREGAGIIVALGSGPNPQGFKVGDRVAWLN----TGGYAEYSVAQAEKRVVRIPEGISDE 375
Query: 58 QAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAE 117
QA +VL G+T LV +YP G ++VHAAAGG G L+ QM K GA+VIG GG E
Sbjct: 376 QALSVLLSGITTLSLVKEAYPVQKGDWILVHAAAGGAGFLMTQMLKDIGAKVIGTAGGPE 555
Query: 118 KAMLATSVGRADVVIDYVAT--PDW-PPLVRAAAPKGVDAVYDGVGQATF 164
KA L S+G ADVVIDY + +W ++ +GV AVYD VG+ T+
Sbjct: 556 KAELVKSLG-ADVVIDYKSPEGANWLGKVMEVTGGEGVAAVYDSVGKDTW 702
>gb|CP000458.1| Burkholderia cenocepacia HI2424 chromosome 1, complete sequence
Length = 3483902
Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats.
Identities = 74/164 (45%), Positives = 95/164 (57%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V VG GV+ G RVAY G G+YA V+ A ++++PDG++ AA
Sbjct: 2547218 GMEAAGEVTAVGDGVTAFKAGDRVAYVGQP--PGAYAQERVMPAERVVKLPDGISYDDAA 2547045
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+V+ QGLTAHYL+ +YP G T+++HAAAGG GLLVCQ AK GA VIG G EKA
Sbjct: 2547044 SVMLQGLTAHYLLRRTYPVKAGDTILIHAAAGGVGLLVCQWAKALGATVIGTVGSDEKAE 2546865
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
LA + G D I Y + GV VYD +G+ T+
Sbjct: 2546864 LAKAHG-CDHPIVYTRENFTQRVKAITNGAGVPVVYDSIGKDTY 2546736
Score = 76.6 bits (187), Expect = 2e-12, Method: Composition-based stats.
Identities = 61/162 (37%), Positives = 83/162 (51%), Gaps = 2/162 (1%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVA--YFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQ 58
G E GTV VG V + +G RVA FG + TG YA + + A+ + +PD V+D
Sbjct: 1369130 GSEVVGTVAAVGANVRDIRVGARVAAPLFGAMRATGGYAEYVTLGAALITAIPDEVSDDD 1368951
Query: 59 AAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEK 118
A AV+ QGL A L+ + P TV + AAAGG G ++ Q+A+L GAR I GA
Sbjct: 1368950 AVAVMLQGLVARVLLRET-PVA-ARTVAITAAAGGVGSMLIQLARLDGARSITGLAGAPA 1368777
Query: 119 AMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
+ A AD I Y L A + +G D V+D +G
Sbjct: 1368776 KLHAVRTLGADRAISYRDADWADQLSDATSREGPDVVFDSIG 1368651
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 43/106 (40%), Positives = 57/106 (53%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G +GAGTVV V +LG+RVAY +G GS+A +T V A LL VPD + AA
Sbjct: 1473298 GVDGAGTVVAVADDAMRYLLGRRVAYHQALGEHGSFAEYTPVAAGVLLTVPDTLDFETAA 1473477
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRG 106
+V C LTA ++ PC ++V A G G + Q+A RG
Sbjct: 1473478 SVPCPALTAWQALE-KVPCRVAREILVSGAGGAVGNYLVQIAADRG 1473612
Score = 53.1 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 56/162 (34%), Positives = 75/162 (46%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG + VG GV+ +G V F G G +A V A L +P G+T Q A
Sbjct: 1480310 GAEFAGVIDAVGEGVTAWRVGDSVMAFTG---HGGFAQQCVADARQLAALPPGMTFEQGA 1480480
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A++ T+ + + G T++V AAGG G+ ++AK GARVI A+K
Sbjct: 1480481 ALVLAYGTSLHALQQRARLQAGETLLVLGAAGGVGIAAIEIAKALGARVIAAASSADKLA 1480660
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQA 162
L G AD IDY + +G D VYD VG A
Sbjct: 1480661 LCREAG-ADETIDYATEDLRRRVDELTGGRGADVVYDPVGGA 1480783
Score = 43.5 bits (101), Expect = 0.021, Method: Composition-based stats.
Identities = 41/133 (30%), Positives = 62/133 (46%), Gaps = 6/133 (4%)
Frame = -2
Query: 34 GSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPG-----STVVVH 88
G YA + V L VPDG+TD +AA++ T V G G T++V
Sbjct: 2506582 GGYAEYAVAPLPQCLPVPDGLTDIEAASLPETFFTVWSNVFDRAQLGAGEGGEQETLLVQ 2506403
Query: 89 AAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAA 148
+ G G+ Q+A G RV G A+K ++G A+ I+Y T D+ +V++
Sbjct: 2506402 GGSSGIGVTAIQIAHALGFRVFATAGTADKCRACEALG-AERAINY-KTEDFVEVVKSLT 2506229
Query: 149 -PKGVDAVYDGVG 160
+GVD + D V
Sbjct: 2506228 HDRGVDVILDMVA 2506190
Score = 40.0 bits (92), Expect = 0.28, Method: Composition-based stats.
Identities = 43/133 (32%), Positives = 62/133 (46%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E +G VV+VG V+ G V F S+A +A A+ + P+ ++ +AA
Sbjct: 886749 GMELSGRVVRVGRAVTAFAAGDAVLGFA----PASFATRVRTRAQAIAQKPERLSFEEAA 886916
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
V TA+Y + G V+VH AGG G+ Q+A+ GA V G EK
Sbjct: 886917 TVPTTFFTAYYALVELARLRRGERVLVHGGAGGVGIAAIQLARHFGAEVFATAGSDEKRE 887096
Query: 121 LATSVGRADVVID 133
+G AD V+D
Sbjct: 887097 FVRLLG-ADHVLD 887132
Score = 36.6 bits (83), Expect = 2.8, Method: Composition-based stats.
Identities = 48/162 (29%), Positives = 67/162 (41%), Gaps = 7/162 (4%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVV--QASAL----LEVPDGV 54
G + AGTVV VG V+ G V Y G + G+ + F V + +AL L+
Sbjct: 1974718 GWDAAGTVVAVGADVTLFRPGDEVFYAGSITRPGANSEFHAVDERIAALKPRTLDFAAAA 1974539
Query: 55 TDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGA-RVIGIC 113
A + L V S G +V++ AGG G + Q+AK G VI
Sbjct: 1974538 ALPLTALTAWEALFDRLRV-SPQGADAGKSVLIIGGAGGVGSIAIQLAKTLGKLHVIATA 1974362
Query: 114 GGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAV 155
A ++G AD V+D+ D P +R A VD V
Sbjct: 1974361 SRPASAEWVRALG-ADAVVDHFG--DLPAQLREAGHPSVDHV 1974245
Score = 35.0 bits (79), Expect = 8.0, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 42/84 (50%)
Frame = -1
Query: 29 GVGCTGSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVH 88
GVG GS+A + V+ A+ + P +T +AA V +TA+ + + V+V
Sbjct: 549203 GVGRDGSHAEWLVLDAAHVRRKPGVLTLEEAAGVGVPFVTAYEGLRRAGMPTADDVVLVF 549024
Query: 89 AAAGGTGLLVCQMAKLRGARVIGI 112
A G G Q+A RGA VIG+
Sbjct: 549023 GANGKVGQAAIQLATARGATVIGV 548952
>gb|CP000378.1| Burkholderia cenocepacia AU 1054 chromosome 1, complete sequence
Length = 3294563
Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats.
Identities = 74/164 (45%), Positives = 95/164 (57%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V VG GV+ G RVAY G G+YA V+ A ++++PDG++ AA
Sbjct: 1861677 GMEAAGEVTAVGDGVTAFKAGDRVAYVGQP--PGAYAQERVMPAERVVKLPDGISYDDAA 1861504
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+V+ QGLTAHYL+ +YP G T+++HAAAGG GLLVCQ AK GA VIG G EKA
Sbjct: 1861503 SVMLQGLTAHYLLRRTYPVKAGDTILIHAAAGGVGLLVCQWAKALGATVIGTVGSDEKAE 1861324
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
LA + G D I Y + GV VYD +G+ T+
Sbjct: 1861323 LAKAHG-CDHPIVYTRENFTQRVKAITNGAGVPVVYDSIGKDTY 1861195
Score = 76.6 bits (187), Expect = 2e-12, Method: Composition-based stats.
Identities = 61/162 (37%), Positives = 83/162 (51%), Gaps = 2/162 (1%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVA--YFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQ 58
G E GTV VG V + +G RVA FG + TG YA + + A+ + +PD V+D
Sbjct: 824495 GSEVVGTVAAVGANVRDIRVGARVAAPLFGAMRATGGYAEYVTLGAALITAIPDEVSDDD 824316
Query: 59 AAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEK 118
A AV+ QGL A L+ + P TV + AAAGG G ++ Q+A+L GAR I GA
Sbjct: 824315 AVAVMLQGLVARVLLRET-PVA-ARTVAITAAAGGVGSMLIQLARLDGARSITGLAGAPA 824142
Query: 119 AMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
+ A AD I Y L A + +G D V+D +G
Sbjct: 824141 KLHAVRTLGADRAISYRDADWADQLSDATSREGPDVVFDSIG 824016
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 43/106 (40%), Positives = 57/106 (53%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G +GAGTVV V +LG+RVAY +G GS+A +T V A LL VPD + AA
Sbjct: 928660 GVDGAGTVVAVADDAMRYLLGRRVAYHQALGEHGSFAEYTPVAAGVLLTVPDTLDFETAA 928839
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRG 106
+V C LTA ++ PC ++V A G G + Q+A RG
Sbjct: 928840 SVPCPALTAWQALE-KVPCRVAREILVSGAGGAVGNYLVQIAADRG 928974
Score = 53.1 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 56/162 (34%), Positives = 75/162 (46%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG + VG GV+ +G V F G G +A V A L +P G+T Q A
Sbjct: 935672 GAEFAGVIDAVGEGVTAWRVGDSVMAFTG---HGGFAQQCVADARQLAALPPGMTFEQGA 935842
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A++ T+ + + G T++V AAGG G+ ++AK GARVI A+K
Sbjct: 935843 ALVLAYGTSLHALQQRARLQAGETLLVLGAAGGVGIAAIEIAKALGARVIAAASSADKLA 936022
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQA 162
L G AD IDY + +G D VYD VG A
Sbjct: 936023 LCREAG-ADETIDYATEDLRRRVDELTGGRGADVVYDPVGGA 936145
Score = 43.5 bits (101), Expect = 0.021, Method: Composition-based stats.
Identities = 41/133 (30%), Positives = 62/133 (46%), Gaps = 6/133 (4%)
Frame = -2
Query: 34 GSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPG-----STVVVH 88
G YA + V L VPDG+TD +AA++ T V G G T++V
Sbjct: 1821043 GGYAEYAVAPLPQCLPVPDGLTDIEAASLPETFFTVWSNVFDRAQLGAGEGGEQETLLVQ 1820864
Query: 89 AAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAA 148
+ G G+ Q+A G RV G A+K ++G A+ I+Y T D+ +V++
Sbjct: 1820863 GGSSGIGVTAIQIAHALGFRVFATAGTADKCRACEALG-AERAINY-KTEDFVEVVKSLT 1820690
Query: 149 -PKGVDAVYDGVG 160
+GVD + D V
Sbjct: 1820689 HDRGVDVILDMVA 1820651
Score = 40.0 bits (92), Expect = 0.28, Method: Composition-based stats.
Identities = 43/133 (32%), Positives = 62/133 (46%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E +G VV+VG V+ G V F S+A +A A+ + P+ ++ +AA
Sbjct: 338788 GMELSGRVVRVGRAVTAFAAGDAVLGFA----PASFATRVRTRAQAIAQKPERLSFEEAA 338955
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
V TA+Y + G V+VH AGG G+ Q+A+ GA V G EK
Sbjct: 338956 TVPTTFFTAYYALVELARLRRGERVLVHGGAGGVGIAAIQLARHFGAEVFATAGSDEKRE 339135
Query: 121 LATSVGRADVVID 133
+G AD V+D
Sbjct: 339136 FVRLLG-ADHVLD 339171
Score = 35.0 bits (79), Expect = 8.0, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 42/84 (50%)
Frame = +1
Query: 29 GVGCTGSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVH 88
GVG GS+A + V+ A+ + P +T +AA V +TA+ + + V+V
Sbjct: 2875984 GVGRDGSHAEWLVLDAAHVRRKPGVLTLEEAAGVGVPFVTAYEGLRRAGMPTADDVVLVF 2876163
Query: 89 AAAGGTGLLVCQMAKLRGARVIGI 112
A G G Q+A RGA VIG+
Sbjct: 2876164 GANGKVGQAAIQLATARGATVIGV 2876235
>gb|EU795230.1| Uncultured bacterium AD248-D7-1A genomic sequence
Length = 35287
Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats.
Identities = 73/164 (44%), Positives = 94/164 (57%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G EGAG V VG GV+E ++G RVAY +G SY ++ A L+++P G+T+ QAA
Sbjct: 8225 GNEGAGVVEAVGDGVTEVVVGDRVAYCMSLG---SYTQRRLIPAKQLVKIPRGITEEQAA 8055
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A + +G T YL+ +YP G TV+ HAAAGG GL+ CQ K G RVIG G AEKA
Sbjct: 8054 AAMLKGCTVQYLIRQTYPVQAGETVLFHAAAGGCGLIACQWLKHLGVRVIGTVGTAEKAD 7875
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
LA + G D I Y + +GV VYD VG+ TF
Sbjct: 7874 LARAHG-CDHPIVYTEENFVDRVKELTDGRGVPVVYDSVGRDTF 7746
>gb|CP001349.1| Methylobacterium nodulans ORS 2060, complete genome
Length = 7772460
Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats.
Identities = 73/164 (44%), Positives = 94/164 (57%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G EGAG +V VG GV+ +G RVAY +G+YA V++A + +PDG+ D AA
Sbjct: 5183001 GNEGAGEIVAVGEGVTGLSVGDRVAYGSA---SGTYAQEVVIEARMAVRIPDGIDDETAA 5182831
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A++ +GLTA YL+ +Y PG T++ HAAAGG GL+ Q AK GA VIG G EKA
Sbjct: 5182830 AMMLKGLTAQYLLRRTYRVQPGDTILFHAAAGGVGLIATQWAKHLGATVIGTVGSQEKAD 5182651
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
L G D VI Y + KG VYDGVG+AT+
Sbjct: 5182650 LGRQHG-CDHVILYRDEDFAARVKEITGGKGCAVVYDGVGKATY 5182522
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 58/160 (36%), Positives = 76/160 (47%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V +GPGV +G+RV G G VV L VPD V+D QAA
Sbjct: 3443583 GAEAAGIVEALGPGVEGFRIGERVIAHLGYGACRER---VVVGVGGLSRVPDQVSDEQAA 3443413
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+ T+ + + PG T+ V A+GG GL ++ GARVI A+K
Sbjct: 3443412 GLTVTYGTSLHALQDRAGLRPGETLAVLGASGGVGLAAVELGHAMGARVIACASSADKLE 3443233
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
A + G AD+++DY L R KG+D VYD VG
Sbjct: 3443232 AAKAHG-ADLILDYGTENLREGLRRLGGEKGIDVVYDPVG 3443116
Score = 61.6 bits (148), Expect = 8e-08, Method: Composition-based stats.
Identities = 40/99 (40%), Positives = 55/99 (55%)
Frame = +3
Query: 66 GLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSV 125
G+TA+ + + PG TVVV AA G G LV Q+AKL+GAR++GI GG +K
Sbjct: 5259639 GMTAYTGLLTIGAPKPGETVVVAAATGPVGSLVGQIAKLKGARIVGIAGGPDKCRYLIEE 5259818
Query: 126 GRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
D +D+ D P + A PKG+D ++ VG A F
Sbjct: 5259819 LGFDAAVDHRGD-DLPTALAEACPKGIDVYFENVGGAVF 5259932
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 46/134 (34%), Positives = 64/134 (47%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G + AG VV+VG V +G V G G++A F V + L P +T +AA
Sbjct: 6538055 GHDLAGVVVRVGSCVQRFKVGDEVYGRAADGRIGTFAEFIAVNEADLALKPKTLTMEEAA 6537876
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
V LTA ++ PG V++ A +GG G + Q+AK GA V G
Sbjct: 6537875 GVPLVALTAWQVLVEEARLQPGQKVLIQAGSGGVGTIAIQLAKHLGATV-ATTAGTSNVA 6537699
Query: 121 LATSVGRADVVIDY 134
L S+G AD+V+DY
Sbjct: 6537698 LVKSLG-ADIVVDY 6537660
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 49/164 (29%), Positives = 79/164 (48%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G + G + ++G GV LG RVA + GS AA+ ++A L VP GV A+AA
Sbjct: 919035 GYDVVGEIDQLGDGVRGFQLGDRVA---DMTVVGSNAAYRTLRADDLTRVPPGVDAAEAA 918865
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A+ TA+ L+ + G V+V AAG G + + ++ G ++ G G +
Sbjct: 918864 ALTLSWTTAYQLLHRTARVQRGQRVLVQGAAGAVGQALLTLGRMAGLQLWGTARGEHTGL 918685
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
+ R IDY D+ ++ P G D V+DG+G+ ++
Sbjct: 918684 VRELGARP---IDY-QREDFTRVL----PGGFDVVFDGIGEDSY 918577
Score = 58.9 bits (141), Expect = 6e-07, Method: Composition-based stats.
Identities = 49/161 (30%), Positives = 77/161 (47%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G + G + ++G GV LG RVA + GS AA+ ++A L VP GV A+AA
Sbjct: 6315641 GYDVVGEIDQLGDGVRGFQLGDRVA---DMTVVGSNAAYRTLRADDLTRVPPGVDAAEAA 6315811
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A+ TA+ L+ + G V+V AAG G + + ++ G ++ G G +
Sbjct: 6315812 ALTLSWTTAYQLLHRTARVQRGQRVLVQGAAGAVGQALLTLGRMAGLQLWGTARGEHTGL 6315991
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQ 161
+ R IDY D+ ++ P G D V+DG+G+
Sbjct: 6315992 VRELGARP---IDY-QREDFTRVL----PGGFDVVFDGIGE 6316090
Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 57/190 (30%), Positives = 81/190 (42%), Gaps = 26/190 (13%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGC----------------TGSYAAF----- 39
G E AG + +G GV +G VA +G + C G F
Sbjct: 1965944 GAEAAGEISGLGEGVEGLKVGDPVALYGALTCGRCRACREGRDNLCEEVGGVMGFHIDGF 1965765
Query: 40 ----TVVQASALLEVPDGVTDAQAA-AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGT 94
V+ A ++ VP GV+ +AA A + G H L D++ PG +++VHA G
Sbjct: 1965764 ARERVVMPARLVVPVPAGVSAVEAACAPIAFGTVQHMLFDNAR-LEPGESILVHAGGSGI 1965588
Query: 95 GLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDA 154
G +MAK G V G K A ++G AD VI+Y + R KGVD
Sbjct: 1965587 GTAAIKMAKAIGCTVFTTVGDDAKGEKARALG-ADHVINYRTERFEGEVRRLTKRKGVDV 1965411
Query: 155 VYDGVGQATF 164
V++ VG T+
Sbjct: 1965410 VFEHVGADTW 1965381
Score = 53.1 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 43/131 (32%), Positives = 65/131 (49%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G + +G+V +G GVS +G V TG+YA + + A+ L++ P + AA
Sbjct: 3073446 GSDLSGSVAALGVGVSGLAVGDAVFGVTNKRFTGAYAEYALASAAMLVKKPATLGHVDAA 3073625
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
++ +TA + G TV++H AAG G Q A+ GARVI GA++A
Sbjct: 3073626 SLPVVAVTAWQALFDHAGIDTGQTVLIHGAAGNVGTYAVQFARAAGARVIATASGADQAY 3073805
Query: 121 LATSVGRADVV 131
L S+G VV
Sbjct: 3073806 L-RSLGAEKVV 3073835
Score = 52.0 bits (123), Expect = 6e-05, Method: Composition-based stats.
Identities = 49/162 (30%), Positives = 70/162 (43%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG + +G GV+ +G V + +G YA F + +A L P ++ +AA
Sbjct: 519126 GLEVAGRIAALGEGVTGLAVGDEVC---ALVISGGYAEFCLAEAPLCLPKPGPLSLIEAA 518956
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+ T V G +VH + G G Q+AK GA V G A+K
Sbjct: 518955 GLPENYYTVWTNVFERGRLQKGERFLVHGGSSGIGYTAIQLAKHFGATVYATAGSADKCA 518776
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQA 162
+G ADV I+Y T + R KGVD + D VG +
Sbjct: 518775 FCERMG-ADVAINYRETDFAEEVKRLTDGKGVDVILDMVGAS 518653
Score = 49.3 bits (116), Expect = 4e-04, Method: Composition-based stats.
Identities = 51/133 (38%), Positives = 65/133 (48%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V VGPGV+ G V F G +A VV + P G++ AA
Sbjct: 2049307 GLECAGRVAAVGPGVTAVAPGDAVVAFAQSG----FATHVVVPEMVVARAPKGISLQAAA 2049140
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
LTA+Y + + G V+VH AGG GL Q+A LRGARVI G EK
Sbjct: 2049139 TTPVAFLTAYYGLVTLAHLKAGEWVLVHGGAGGVGLAALQIASLRGARVIATAGSTEKRA 2048960
Query: 121 LATSVGRADVVID 133
L ++G A+ V+D
Sbjct: 2048959 LVKALG-AERVLD 2048924
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 55/183 (30%), Positives = 75/183 (40%), Gaps = 22/183 (12%)
Frame = -2
Query: 5 AGTVVKVGPGVSETMLGKRV-AYFG--------------------GVGCTGSYAAFTVVQ 43
AGTV+ +G GVS +G RV + F G G A +
Sbjct: 3575264 AGTVMALGEGVSRFKMGDRVISTFSPDWVEGRPPGSARTPPFRTLGGAYPGVLAEYVSFP 3575085
Query: 44 ASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAK 103
+ P + A A+ + C GLTA + + G TV+V GG L Q+AK
Sbjct: 3575084 EGWFVAAPQSLDLAAASTLPCAGLTAWFALVERGRLKAGETVLVQ-GTGGVALFGLQIAK 3574908
Query: 104 LRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLV-RAAAPKGVDAVYDGVGQA 162
L GA V G +K ++G AD ID A DW V R +G+D + + VG A
Sbjct: 3574907 LHGAEVFVTSGKTDKLDRVRALG-ADQAIDRTAG-DWVEAVYRLTGDRGIDHILEIVGGA 3574734
Query: 163 TFA 165
A
Sbjct: 3574733 HLA 3574725
Score = 42.0 bits (97), Expect = 0.075, Method: Composition-based stats.
Identities = 39/155 (25%), Positives = 65/155 (41%), Gaps = 24/155 (15%)
Frame = +3
Query: 34 GSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYP--CGPGSTVVVHAAA 91
GS+ F VQ+ L++ P +T ++A TA+ ++ P PG V+V A+
Sbjct: 41784 GSFGQFCRVQSRQLMKRPKHLTWEESACYTLTLATAYRMLFGHAPHTVRPGQNVLVWGAS 41963
Query: 92 GGTGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVV----------IDYVATPDWP 141
GG G+ Q+ GA I + K S+G V+ + V +P++
Sbjct: 41964 GGLGVFGVQLCAASGANAIAVISDESKRDYVMSLGAKGVINRKEFNCWGQLPKVNSPEYN 42143
Query: 142 PLVRAAAPKG------------VDAVYDGVGQATF 164
++ A G VD V++ G+ATF
Sbjct: 42144 EWLKEARKFGKAIWDITGKGNDVDIVFEHPGEATF 42248
Score = 35.8 bits (81), Expect = 5.4, Method: Composition-based stats.
Identities = 36/125 (28%), Positives = 54/125 (43%), Gaps = 18/125 (14%)
Frame = -2
Query: 29 GVGCTGSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVH 88
G+ G Y+ VV +L +PD + AA +LC G+T + + G GS V V
Sbjct: 6261419 GMPTFGGYSERIVVSDRFVLRIPDALDLEGAAPLLCAGITTWSPL-RHWKVGKGSKVAV- 6261246
Query: 89 AAAGGTGLLVCQMAKLRGARVI-----------GICGGAEKAMLATS-------VGRADV 130
GG G + ++A GA V C GA++ +L+T G D+
Sbjct: 6261245 VGLGGLGHMALKLASTLGANVTLFTRSPGKEQDARCLGADRVVLSTDEAQMASVKGEFDL 6261066
Query: 131 VIDYV 135
+ID V
Sbjct: 6261065 IIDTV 6261051
>emb|CU633749.1| Cupriavidus taiwanensis str. LMG19424 chromosome 1, complete genome
Length = 3416911
Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats.
Identities = 74/164 (45%), Positives = 93/164 (56%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G EGAG V VG GV +G RVAY G TG+YA V+ A ++ +PD + AA
Sbjct: 908853 GMEGAGVVEAVGEGVRHVAVGDRVAYAGRP--TGAYAQVRVMPADIVVRLPDAIPFETAA 909026
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A++ QGLTA YL+ SY PG TV++HAAAGG GL+ CQ K G VIG G EKA
Sbjct: 909027 AMMLQGLTAQYLIRDSYKVQPGDTVLLHAAAGGVGLIACQWLKALGVTVIGTVGSDEKAE 909206
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
LA + G A ++ Y + KGV AVYD +G+ TF
Sbjct: 909207 LARANGCAHTIV-YTRESFVERVREITNGKGVPAVYDSIGKDTF 909335
Score = 60.8 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 58/168 (34%), Positives = 77/168 (45%), Gaps = 4/168 (2%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG +++V P V+ +G+RVA G +A V A + VP G+T A AA
Sbjct: 1809286 GTEAAGEILEVAPDVTRLHVGQRVA---AALDWGGFAEEVVTTADTVYPVPGGLTLAHAA 1809116
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A+ T + PG T++VH A+G G Q+ +L GARVI A K
Sbjct: 1809115 ALPITYGTVWAALAWRAALQPGDTMLVHGASGALGTAAVQVGRLMGARVIATASTAAKRE 1808936
Query: 121 LATSVGRADVVIDYVATPDWPPL---VRAAAPK-GVDAVYDGVGQATF 164
A G A +V PD L V+A P G D V+D VG F
Sbjct: 1808935 AALRNGAA-----HVLEPDPATLAGAVKALCPAGGADVVFDPVGGDLF 1808807
Score = 55.8 bits (133), Expect = 5e-06, Method: Composition-based stats.
Identities = 39/111 (35%), Positives = 54/111 (48%), Gaps = 3/111 (2%)
Frame = +1
Query: 57 AQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGA 116
A AV G+TA Y ++ G T+ V AA+G G +V Q+AKL G R +G GG
Sbjct: 1533238 AYLGAVGMPGVTAWYGLNKIIQPKAGKTIAVSAASGAVGSVVGQLAKLAGCRAVGFAGGK 1533417
Query: 117 EKAMLATSVGRADVVIDYVATPDWPPL---VRAAAPKGVDAVYDGVGQATF 164
+K + D IDY A D L ++ A P G+D ++ VG F
Sbjct: 1533418 DKCDYVVNELGFDACIDYKAAKDPKELYTMLKEATPDGIDGYFENVGGEIF 1533570
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 57/162 (35%), Positives = 79/162 (48%), Gaps = 2/162 (1%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRV-AYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQA 59
G E AG V VG GV+ G V AY G G++A+ A++++ +P G+ A
Sbjct: 2028288 GSELAGVVNAVGEGVTHVKPGDNVIAYLG----NGAFASQARAPAASVVPMPPGIDFETA 2028455
Query: 60 AAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKA 119
AA T+H+ V G T++V AAGG GL ++ K GARVI EK
Sbjct: 2028456 AAFTLTYGTSHHAVIDRGELKAGQTMLVLGAAGGVGLAAIEIGKAIGARVIAAASTDEKL 2028635
Query: 120 MLATSVGRADVVIDYVATPDWPPLVRAAA-PKGVDAVYDGVG 160
+ G AD I+Y +T D ++A KG D +YD VG
Sbjct: 2028636 EVCKQHG-ADAFINY-STEDLRERIKALTDSKGPDVIYDPVG 2028755
Score = 38.5 bits (88), Expect = 0.71, Method: Composition-based stats.
Identities = 49/174 (28%), Positives = 69/174 (39%), Gaps = 9/174 (5%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCT----GSYAAFTVVQASALLEVPDGVTD 56
G E AG VV G ++ G +V G C G YA + +L P G++D
Sbjct: 1055201 GLEVAGVVVGGDLGHADNRFGLKV---GDRVCALVQGGGYAQLCTAPLAQVLPAPQGLSD 1055371
Query: 57 AQAAAVLCQGLTA-HYLVDSSY----PCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIG 111
+AAA+ T + D Y P G T+++ + G G Q+AK G +V
Sbjct: 1055372 IEAAALPETFFTVWSNVFDRGYLGQGPRGKEETLLIQGGSSGIGTTAIQVAKALGFKVFV 1055551
Query: 112 ICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATFA 165
G EK +G AD I+Y + KGVD + D V A
Sbjct: 1055552 TAGTDEKCKACEDLG-ADRAINYKTQDFVAEVAALTGGKGVDVILDMVAGPYLA 1055710
>gb|AE006469.1| Sinorhizobium meliloti 1021 plasmid pSymA, complete sequence
Length = 1354226
Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats.
Identities = 69/164 (42%), Positives = 93/164 (56%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G EGAG V+ VG G E +G RVA+ V GSYA + A++L+++PD V D AA
Sbjct: 1345708 GVEGAGRVLAVGDGTGEFAVGDRVAW---VYAPGSYAQRQSIPAASLVKIPDTVDDRTAA 1345878
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+ + QGLTA + YP PG +VHAAAGG GLL+ Q+ +LRG RVIG +K
Sbjct: 1345879 STMMQGLTASHFATDFYPVQPGDIALVHAAAGGVGLLLTQIIRLRGGRVIGRVSSEDKVA 1346058
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
+A G V++D ++R +GV+ VYDG G TF
Sbjct: 1346059 IARKAGAEHVIVDTDGRFA-DEVLRLTGGEGVNVVYDGSGPKTF 1346187
Score = 43.9 bits (102), Expect = 0.017, Method: Composition-based stats.
Identities = 47/166 (28%), Positives = 70/166 (42%), Gaps = 2/166 (1%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCT--GSYAAFTVVQASALLEVPDGVTDAQ 58
G E AG V KVGPGV + G V+ +Y + A+ L+ P ++ +
Sbjct: 24585 GLEAAGFVEKVGPGVQGFIPGDPVSVLPPKSMIRWPAYGELAIFPAALLVRHPPSLSFEE 24764
Query: 59 AAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEK 118
AAAV Q LTA+ + G V + AA+ GL Q+A + GA + + + K
Sbjct: 24765 AAAVWMQYLTAYGGLVDIGGLRRGDFVAITAASSSVGLAAIQIANMVGAIPVAVTRTSAK 24944
Query: 119 AMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
G A V+ + L R + G+ V+D VG F
Sbjct: 24945 RQGLLEAGAAHVIASMEEDLE-AQLKRVSGQHGIRVVFDPVGGPIF 25079
>gb|CP000759.1| Ochrobactrum anthropi ATCC 49188 chromosome 2, complete sequence
Length = 1895911
Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats.
Identities = 73/164 (44%), Positives = 94/164 (57%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G EGAGTV+ VGPGV +G RVAY V GSYA ++ A L++VPD V AA
Sbjct: 1010299 GNEGAGTVIAVGPGVEGVRVGDRVAY---VATPGSYADERILPADRLVKVPDNVDLKTAA 1010129
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+++ +G+TA YL+ ++ PG T++ HAAAGG GL+ Q AK GA VIG G EK
Sbjct: 1010128 SMMLKGMTAQYLLRRTFKVEPGQTILFHAAAGGVGLIAGQWAKHLGATVIGTAGSEEKIA 1009949
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
LA G D VI+Y + GVD VYD VG+ T+
Sbjct: 1009948 LARKHGY-DHVINYRTENFAEKVKELTGGAGVDVVYDSVGRDTY 1009820
Score = 35.8 bits (81), Expect = 4.4, Method: Composition-based stats.
Identities = 39/146 (26%), Positives = 55/146 (37%), Gaps = 37/146 (25%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGC---------------------------- 32
G E AG V VG V++ +G +V GVGC
Sbjct: 982205 GHEIAGVVTAVGNAVTKFKVGDKV----GVGCFVDSCVGCASRDVDNEQYLPGLIQTYNT 982038
Query: 33 ---------TGSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGS 83
G Y+ VV+ +L +PD + AA +LC G+T Y + GPG
Sbjct: 982037 PDAEGKARTQGGYSDHIVVKEGYVLSIPDNLPLDAAAPLLCAGITL-YSPLRHWNAGPGK 981861
Query: 84 TVVVHAAAGGTGLLVCQMAKLRGARV 109
V + GG G + ++A GA V
Sbjct: 981860 RVAI-VGMGGLGHMGVKLANAMGAHV 981786
>gb|CP000738.1| Sinorhizobium medicae WSM419, complete genome
Length = 3781904
Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats.
Identities = 76/165 (46%), Positives = 103/165 (62%), Gaps = 1/165 (0%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G+EGAG V VG GV+ +G RVAY G+YA+ V AS LL+VPDG++ AA
Sbjct: 1502057 GKEGAGIVTAVGDGVTMFSVGDRVAY---ASADGAYASERNVDASQLLKVPDGISLETAA 1501887
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A++ +G+TA YL++ ++ GP +T++ HAAAGG GL+ Q AK GA VIG G EK
Sbjct: 1501886 AMMLKGMTAQYLLNQTFKVGPDTTLLFHAAAGGVGLIAGQWAKALGATVIGTAGSQEKID 1501707
Query: 121 LATSVGRADVVIDYVATPDWPPLVRA-AAPKGVDAVYDGVGQATF 164
LA + G D VI+Y T D+ V+ +GVD VYD VG+ T+
Sbjct: 1501706 LALAHGY-DHVINY-RTDDFVTRVKELTGGRGVDVVYDSVGRDTY 1501578
Score = 58.5 bits (140), Expect = 8e-07, Method: Composition-based stats.
Identities = 60/192 (31%), Positives = 87/192 (45%), Gaps = 27/192 (14%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGC----------------TGSYAAFTV--- 41
G E +G V +G GV+ + G+ V+ +G C G F +
Sbjct: 1817833 GAEASGVVESIGSGVANVLPGQLVSIYGARTCGLCRPCREGRDNLCEHVGGVHGFHLDGF 1817654
Query: 42 ------VQASALLEVPDGVTDAQAA-AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGT 94
+ A L+ P GV + AA A + G H L D++ PG T++VHA G
Sbjct: 1817653 AQEKVNLPARLLVPAPPGVDEIGAALAPVTFGTVEHMLFDNAR-LEPGETILVHAGGSGI 1817477
Query: 95 GLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRA-AAPKGVD 153
G Q+AK G VI G +K A ++G AD VI+Y T + +VR KGVD
Sbjct: 1817476 GSAALQLAKKIGCTVITTVGSDDKIERAKALG-ADHVINY-RTDRFEGVVRKLTKKKGVD 1817303
Query: 154 AVYDGVGQATFA 165
V++ VG+ T+A
Sbjct: 1817302 VVFEHVGKDTWA 1817267
Score = 52.4 bits (124), Expect = 5e-05, Method: Composition-based stats.
Identities = 42/135 (31%), Positives = 58/135 (42%), Gaps = 1/135 (0%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G + AG + VG GV G R + G +A + + A A +P V AA
Sbjct: 2530510 GLDAAGVIDAVGRGVEGWKAGDRAVVHNNLWKPGVFAEYCLAPAHATSRLPGSVNFTDAA 2530331
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A+ C G TA+ + G T+++ A GG G Q+A GA VI + A
Sbjct: 2530330 AIPCAGYTAYQALFRKARLEAGQTILIQGANGGVGGFATQLAHQAGATVIAL---ARPEH 2530160
Query: 121 LATSVG-RADVVIDY 134
A G AD+V DY
Sbjct: 2530159 FAAVRGFGADIVFDY 2530115
Score = 49.7 bits (117), Expect = 3e-04, Method: Composition-based stats.
Identities = 50/164 (30%), Positives = 68/164 (41%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG VV +G G S +G RV + G+YA + V A+ L P G +AA
Sbjct: 617229 GLEVAGEVVALGHGASGFSIGDRVC---ALANGGAYAEYCAVPATQALLWPKGYDAVKAA 617399
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A+ T V G T +VH + G G Q+AK GA V G A K
Sbjct: 617400 ALPETFFTVWANVFDMAGLKSGETFLVHGGSSGIGTTAIQLAKALGAEVFATAGSAAKCK 617579
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
++G A I+Y ++ +G D + D VG F
Sbjct: 617580 ACEALG-AKRAINYREEDFRAVVLEETGGRGADVILDMVGGPYF 617708
Score = 49.3 bits (116), Expect = 4e-04, Method: Composition-based stats.
Identities = 44/133 (33%), Positives = 67/133 (50%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E +G VV VG V + +G V + +++ +V + + ++P + AA
Sbjct: 219318 GMELSGHVVAVGEEVDDLAVGDAVMAIA----SSAFSTHAIVARAGIAKLPRAMNPVAAA 219151
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+ LTA+Y + G T+++H AAGG GL Q+AKL+GA+VI G EK
Sbjct: 219150 TLPVAFLTAYYAIVELGRIQAGETILIHGAAGGVGLAALQVAKLKGAKVIATAGTREKRR 218971
Query: 121 LATSVGRADVVID 133
T +G AD V D
Sbjct: 218970 FLTMLG-ADYVFD 218935
Score = 41.2 bits (95), Expect = 0.10, Method: Composition-based stats.
Identities = 36/110 (32%), Positives = 51/110 (46%), Gaps = 3/110 (2%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G EG G V +VG V + G RV +G +G + F + VPD + DAQAA
Sbjct: 541475 GFEGVGIVRRVGADVRDFKPGDRVV---PIGASGLWQQFVLRPGEWCFRVPDDIADAQAA 541305
Query: 61 AVLCQGLTAHYLVD---SSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGA 107
LTA LV+ + + G V V AA G ++ ++ L+GA
Sbjct: 541304 MSYVNPLTALRLVEALRTHFGSLQGIEVGVTAAGSAIGGMLVKLLALQGA 541155
Score = 38.1 bits (87), Expect = 1.1, Method: Composition-based stats.
Identities = 45/141 (31%), Positives = 61/141 (43%), Gaps = 3/141 (2%)
Frame = -2
Query: 25 AYFGGV--GCTGSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPG 82
A GG G Y AF + P + A+A+ + C GLTA + + G
Sbjct: 2439814 ATLGGAFPGVMSEYVAFP---EDWFVAAPKSLDAAEASTLPCAGLTAWFALVERGHLRAG 2439644
Query: 83 STVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDW-P 141
V+V GG L Q+AK GA VI AEK A S+G AD I+ ++ DW
Sbjct: 2439643 DRVLVQ-GTGGVALFGLQIAKATGAEVIITSSSAEKLERALSLG-ADHGINR-SSEDWVE 2439473
Query: 142 PLVRAAAPKGVDAVYDGVGQA 162
L + A G D + + G A
Sbjct: 2439472 RLYQLTADHGADHILEIAGGA 2439410
Score = 37.4 bits (85), Expect = 1.4, Method: Composition-based stats.
Identities = 42/158 (26%), Positives = 61/158 (38%), Gaps = 25/158 (15%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAY-------------------------FGGVGCTGS 35
G EG G V VG GV G RV G G+
Sbjct: 3147844 GHEGVGFVSAVGAGVRRVKEGDRVGVPWLHTACRYCTYCRTGWETLCSSQSNTGYSVNGT 3147665
Query: 36 YAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTG 95
+A F + ++PD + AA VLC G+T + + + PG V + + GG G
Sbjct: 3147664 FAEFGLADPEFAGKIPDRLEFGAAAPVLCAGVTVYKGLKET-EVRPGEWVAI-SGVGGLG 3147491
Query: 96 LLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVID 133
+ Q AK G V+ +K LA +G AD+ ++
Sbjct: 3147490 HMAVQYAKAMGMHVVAADISEDKLALAKQLG-ADIAVN 3147380
Score = 36.6 bits (83), Expect = 3.1, Method: Composition-based stats.
Identities = 51/186 (27%), Positives = 69/186 (37%), Gaps = 26/186 (13%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCT------------------------GSY 36
G E AGT+ VG GV G RV GC GS+
Sbjct: 634061 GHELAGTIAAVGRGVLRYKTGDRVTVPFVSGCGRCFECRSGNNQVCEAQFQPGFTHWGSF 633882
Query: 37 AAFTVVQAS--ALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGT 94
A + + + L+ +P+ + A AA++ C+ T+ + G V VH GG
Sbjct: 633881 AEYVAIDFADQNLVHLPEDMDFATAASLGCRFATSFRALLDQARVKGGEWVAVH-GCGGV 633705
Query: 95 GLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDA 154
GL +A GA I I EK A +G A I+ AT D VR G
Sbjct: 633704 GLSAVMIAAALGANPIAIDISEEKLAFARKLG-AVATINGRATEDVAGAVRDITRGGAHV 633528
Query: 155 VYDGVG 160
D +G
Sbjct: 633527 SLDALG 633510
Score = 35.0 bits (79), Expect = 7.6, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 38/81 (46%)
Frame = -1
Query: 29 GVGCTGSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVH 88
G G Y+ VV+ +L +P+ + AA +LC G+T Y + GPG V +
Sbjct: 2672501 GTPTQGGYSDHIVVKEGYVLSIPENLPLDAAAPLLCAGITL-YSPLRHWEAGPGKKVAI- 2672328
Query: 89 AAAGGTGLLVCQMAKLRGARV 109
GG G + ++A GA V
Sbjct: 2672327 VGMGGLGHMGVKLAHAMGAEV 2672265
>gb|CP000614.1| Burkholderia vietnamiensis G4 chromosome 1, complete sequence
Length = 3652814
Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats.
Identities = 75/164 (45%), Positives = 94/164 (57%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V VG GVS G RVAY G G+YA V+ A L+++PD + AA
Sbjct: 2637232 GMEAAGEVTAVGDGVSALKAGDRVAYVGQP--PGAYAQERVMPAERLVKLPDALGYDDAA 2637059
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+V+ QGLTAHYL+ +YP G T+++HAAAGG GLLVCQ AK GA VIG G EKA
Sbjct: 2637058 SVMLQGLTAHYLLRRTYPVKAGDTILIHAAAGGVGLLVCQWAKALGATVIGTVGSDEKAA 2636879
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
LA++ G D I Y + GV VYD +G+ T+
Sbjct: 2636878 LASAHG-CDHPIVYTRENFTQRVKEITNGAGVPVVYDSIGKDTY 2636750
Score = 37.4 bits (85), Expect = 1.7, Method: Composition-based stats.
Identities = 51/161 (31%), Positives = 70/161 (43%), Gaps = 6/161 (3%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G + AGTVV VG V+ G V Y G + G+ + F V + P+ + A AA
Sbjct: 1857149 GWDAAGTVVAVGADVTLFRPGDAVFYAGSITRPGANSEFHAVDERIVARKPESLDFAAAA 1856970
Query: 61 AVLCQGLTAHYLVDSSYPCGP-----GSTVVVHAAAGGTGLLVCQMAK-LRGARVIGICG 114
A+ LTA + P G +V++ AGG G + Q+AK L G VI
Sbjct: 1856969 ALPLTALTAWEALFDRLRVSPQRADAGKSVLIIGGAGGVGSIAIQLAKTLGGLHVIATAS 1856790
Query: 115 GAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAV 155
A S+G AD V+D+ D P +R VD V
Sbjct: 1856789 RPASAEWVRSLG-ADDVVDHFG--DLPAQLREIGRPNVDYV 1856676
>gb|CP001001.1| Methylobacterium radiotolerans JCM 2831, complete genome
Length = 6077833
Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats.
Identities = 80/164 (48%), Positives = 95/164 (57%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G+EGAGTV VG GVS+ G RVAY G G YA V+ ASA + +PDGV + AA
Sbjct: 1753817 GKEGAGTVTAVGEGVSQFKPGDRVAY--GSVADGCYAEEPVIPASAAVPIPDGVDEKTAA 1753644
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A++ +GLT YL+ +Y PG T++ AAAGG GL+ CQ AK GA VIG G EKA
Sbjct: 1753643 AMMLKGLTVEYLLHRTYAVKPGDTILWQAAAGGVGLIACQWAKHLGATVIGTAGSPEKAE 1753464
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
LA G D VI Y + KGV VYDGVGQAT
Sbjct: 1753463 LAKRNG-CDHVILYREEDVAKRVREITGGKGVPVVYDGVGQATL 1753335
Score = 70.1 bits (170), Expect = 2e-10, Method: Composition-based stats.
Identities = 58/163 (35%), Positives = 78/163 (47%), Gaps = 1/163 (0%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G EG G V +G G + +G RV G GC A + A+ L VPD V DAQAA
Sbjct: 3751093 GGEGVGVVEALGEGAAGVSVGDRVIVHAGHGCC---AELIALDAARLTPVPDAVPDAQAA 3750923
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+ T+ + + + PG + V A+GG GL ++ +L GARVI EK
Sbjct: 3750922 GLTITYGTSLHALANRARLQPGEWLAVLGASGGVGLAAVELGRLMGARVIACASSEEKLA 3750743
Query: 121 LATSVG-RADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQA 162
+A + G A VV D D +R + G+D VYD VG A
Sbjct: 3750742 VARAHGAEAGVVYDPATLKDE---LRRISGGGIDVVYDAVGDA 3750623
Score = 65.5 bits (158), Expect = 5e-09, Method: Composition-based stats.
Identities = 62/190 (32%), Positives = 83/190 (43%), Gaps = 26/190 (13%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGC-------------------------TGS 35
G E AGTV VG GV+ + G RV +G + C G
Sbjct: 3240906 GAEAAGTVESVGAGVTGLVAGDRVVPYGAMTCGRCKACREGRDNLCEDVSGVMGFHLDGF 3240727
Query: 36 YAAFTVVQASALLEVPDGVTDAQAA-AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGT 94
+ A +++VPDGV+D AA A + G H L D++ PG +V+VHA G
Sbjct: 3240726 ARELVTMPARLVVKVPDGVSDTDAACAGIAFGTVQHMLFDNAR-LEPGESVLVHAGGSGI 3240550
Query: 95 GLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDA 154
G +MAK G V G EK A +G AD VI+Y + R KGVD
Sbjct: 3240549 GTAAIRMAKAIGCTVYTTVGDDEKGRKAAELG-ADHVINYRTERFEGEVRRLTKRKGVDV 3240373
Query: 155 VYDGVGQATF 164
V++ VG T+
Sbjct: 3240372 VFEHVGADTW 3240343
Score = 56.2 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 55/161 (34%), Positives = 74/161 (45%), Gaps = 1/161 (0%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V +GPG G RV + +G+YA + VV + L+VPDG+ +A
Sbjct: 369799 GLELAGIVEALGPGAGRFRTGDRVM---ALVHSGAYAEWAVVDEAVALKVPDGLPAIEAG 369629
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A+ T V G ++++H A G G +AK GARVI G +EK
Sbjct: 369628 AIPETYFTVWSNVFERARLRAGESLLIHGGASGIGTTAILLAKAWGARVIVTAGSSEKCA 369449
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAP-KGVDAVYDGVG 160
+G AD IDY D+ RAA G D + D VG
Sbjct: 369448 ACLKLG-ADAAIDY-RREDFVAAARAATDGGGPDVILDMVG 369332
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 31/69 (44%), Positives = 40/69 (57%)
Frame = +2
Query: 97 LVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVY 156
LV Q+AK+ GAR +GI GG EK T D ID+ + D P + AA PKG+D +
Sbjct: 3977345 LVGQIAKIHGARAVGIAGGPEKCRYLTEELGFDAAIDHRGS-DLPGTLAAACPKGIDVYF 3977521
Query: 157 DGVGQATFA 165
+ VG A FA
Sbjct: 3977522 ENVGGAVFA 3977548
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 60/159 (37%), Positives = 78/159 (49%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V VGPGV +G V F G +A VV + +P G+ AA
Sbjct: 1003414 GLECAGRVTAVGPGVKGFKVGDPVVAFAQSG----FATHIVVPDLVVAPMPQGLDPMAAA 1003247
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
V LTA+Y + S G V+VH AGG GL Q+AKL+GARVI G EK
Sbjct: 1003246 TVPVAFLTAYYGLVSCARMRRGEWVLVHGGAGGVGLAALQIAKLKGARVIATAGSREKRA 1003067
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGV 159
L ++G A+ V+D + + VRA GVD V + +
Sbjct: 1003066 LVKALG-AEHVLDSRSLA-FVDEVRAITGDGVDIVLNSL 1002956
Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 50/165 (30%), Positives = 68/165 (41%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG VV +G GV G V + +G YA + V +A+ L P V A
Sbjct: 3121991 GLEVAGRVVALGSGVENLTEGDEVC---ALVISGGYAEYAVAEAAHCLPRPKAVALVDAG 3121821
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+ T + V G + +VH + G G Q+AK GARV G EK
Sbjct: 3121820 GLPETFFTVYSNVVQRGRLARGESFLVHGGSSGIGATAIQIAKHVGARVFATAGSTEKCR 3121641
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATFA 165
+G AD IDY + R +GVD + D +G + A
Sbjct: 3121640 FCEDLG-ADAAIDYKQADFAEEVKRLTEGRGVDVILDMIGASYLA 3121509
Score = 44.3 bits (103), Expect = 0.012, Method: Composition-based stats.
Identities = 40/154 (25%), Positives = 64/154 (41%), Gaps = 23/154 (14%)
Frame = -3
Query: 34 GSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYP--CGPGSTVVVHAAA 91
GS+A F VQ+ L+ P +T +AA TA+ ++ P PG V++ A+
Sbjct: 1161491 GSFAQFCRVQSRQLMTRPKHLTWEEAACYTLTLATAYRMLFGHAPHTVKPGQNVLIWGAS 1161312
Query: 92 GGTGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVV----------IDYVATPDWP 141
GG G+ Q+ GA I + K S+G V+ + V +P++
Sbjct: 1161311 GGLGVFGVQLCAASGANAIAVISDESKRDYVMSLGAKGVINRKDFDCWGQLPKVNSPEFH 1161132
Query: 142 PLVRAAAPKG-----------VDAVYDGVGQATF 164
+ A G VD V++ G+ATF
Sbjct: 1161131 AWTKEARKFGKAIWDITGKQDVDIVFEHPGEATF 1161030
Score = 44.3 bits (103), Expect = 0.014, Method: Composition-based stats.
Identities = 59/181 (32%), Positives = 72/181 (39%), Gaps = 19/181 (10%)
Frame = -1
Query: 3 EGAGTVVKVGPGVSETMLGKRV------------------AYFGGVGCTGSYAAFTVVQA 44
+GAG V VGPG++E +G RV A G G G A A
Sbjct: 1490299 DGAGEVEAVGPGMTEFAVGDRVVSTFFPTWLEGTPLVEGFATVPGDGVDGYARARVTAPA 1490120
Query: 45 SALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKL 104
+A P G A+AA + LTA + + G V+V GG L Q AK
Sbjct: 1490119 TAFTRAPKGWDHAEAATLTTAALTAWRALHADAGLKSGDVVLVQ-GTGGVSLFGLQFAKA 1489943
Query: 105 RGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAP-KGVDAVYDGVGQAT 163
GA VI K +G AD VI+Y A P W R +GVD V D G AT
Sbjct: 1489942 AGATVIATSSSDAKLERLRGLG-ADHVINYRADPAWGETARRLTDGRGVDHVLDVGGPAT 1489766
Query: 164 F 164
Sbjct: 1489765 L 1489763
>gb|CP000958.1| Burkholderia cenocepacia MC0-3 chromosome 1, complete sequence
Length = 3532883
Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats.
Identities = 74/164 (45%), Positives = 95/164 (57%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V VG GV+ G RVAY G G+YA V+ A ++++PDG++ AA
Sbjct: 2587786 GMEAAGEVTAVGDGVTAFKAGDRVAYVGQP--PGAYAQERVMPAERVVKLPDGISYDDAA 2587613
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+V+ QGLTAHYL+ +YP G T+++HAAAGG GLLVCQ AK GA VIG G EKA
Sbjct: 2587612 SVMLQGLTAHYLLRRTYPVKAGDTILIHAAAGGVGLLVCQWAKALGATVIGTVGSDEKAE 2587433
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
LA + G D I Y + GV VYD +G+ T+
Sbjct: 2587432 LAKAHG-CDHPIVYTRENFTQRVKAITNGAGVPVVYDSIGKDTY 2587304
Score = 75.5 bits (184), Expect = 6e-12, Method: Composition-based stats.
Identities = 61/162 (37%), Positives = 82/162 (50%), Gaps = 2/162 (1%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVA--YFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQ 58
G E GTV VG V + +G RVA FG + TG YA + + A+ + +PD V+D
Sbjct: 1332334 GSEVVGTVAAVGANVRDIRVGARVAAPLFGAMRATGGYAEYVTLGAALITAIPDEVSDDD 1332155
Query: 59 AAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEK 118
A AV+ QGL A L+ + P TV + AAAGG G ++ Q+A+L GAR I GA
Sbjct: 1332154 AVAVMLQGLVARVLLRET-PVA-ARTVAITAAAGGVGSMLIQLARLDGARSITGLAGAPA 1331981
Query: 119 AMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
+ A AD I Y L A +G D V+D +G
Sbjct: 1331980 KLHAVRKLGADRAISYRDAHWADQLSDATGREGPDVVFDSIG 1331855
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 55/162 (33%), Positives = 73/162 (45%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG + VG GV+ G V F G G +A V L +P G+T Q A
Sbjct: 1458777 GAEFAGVIDAVGAGVTAWRPGGSVMAFTG---HGGFAEQCVADVHQLAALPPGMTFEQGA 1458947
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A++ T+ + + G T++V AAGG G+ ++AK GARVI A+K
Sbjct: 1458948 ALVLAYGTSLHALQQRARLQAGETLLVLGAAGGVGIAAIEIAKALGARVIAAASSADKLA 1459127
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQA 162
L G AD IDY + +G D VYD VG A
Sbjct: 1459128 LCREAG-ADETIDYATEDLRRRVDELTGGRGADVVYDPVGGA 1459250
Score = 43.5 bits (101), Expect = 0.021, Method: Composition-based stats.
Identities = 41/133 (30%), Positives = 62/133 (46%), Gaps = 6/133 (4%)
Frame = -2
Query: 34 GSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPG-----STVVVH 88
G YA + V L VPDG+TD +AA++ T V G G T++V
Sbjct: 2547163 GGYAEYAVAPLPQCLPVPDGLTDIEAASLPETFFTVWSNVFDRAQLGAGEGGEQETLLVQ 2546984
Query: 89 AAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAA 148
+ G G+ Q+A G RV G A+K ++G A+ I+Y T D+ +V++
Sbjct: 2546983 GGSSGIGVTAIQIAHALGFRVFATAGTADKCRACEALG-AERAINY-KTEDFVEVVKSLT 2546810
Query: 149 -PKGVDAVYDGVG 160
+GVD + D V
Sbjct: 2546809 HDRGVDVILDMVA 2546771
Score = 40.0 bits (92), Expect = 0.28, Method: Composition-based stats.
Identities = 43/133 (32%), Positives = 62/133 (46%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E +G VV+VG V+ G V F S+A +A A+ + P+ ++ +AA
Sbjct: 842423 GMELSGRVVRVGRAVTAFAAGDAVLGFA----PASFATRVRTRAQAIAQKPERLSFEEAA 842590
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
V TA+Y + G V+VH AGG G+ Q+A+ GA V G EK
Sbjct: 842591 TVPTTFFTAYYALVELARLRRGERVLVHGGAGGVGIAAIQLARHFGAEVFATAGSDEKRE 842770
Query: 121 LATSVGRADVVID 133
+G AD V+D
Sbjct: 842771 FVRLLG-ADHVLD 842806
Score = 36.6 bits (83), Expect = 3.1, Method: Composition-based stats.
Identities = 48/162 (29%), Positives = 67/162 (41%), Gaps = 7/162 (4%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVV--QASAL----LEVPDGV 54
G + AGTVV VG V+ G V Y G + G+ + F V + +AL L+
Sbjct: 2003224 GWDAAGTVVAVGADVALFRPGDEVFYAGSITRPGANSEFHAVDERIAALKPRTLDFAAAA 2003045
Query: 55 TDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGA-RVIGIC 113
A + L V S G +V++ AGG G + Q+AK G VI
Sbjct: 2003044 ALPLTALTAWEALFDRLRV-SPQGADAGKSVLIIGGAGGVGSIAIQLAKTLGKLHVIATA 2002868
Query: 114 GGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAV 155
A ++G AD V+D+ D P +R A VD V
Sbjct: 2002867 SRPASAEWVRTLG-ADAVVDHFG--DLPAQLREAGHPSVDYV 2002751
>emb|AM711867.1| Clavibacter michiganensis subsp. michiganensis NCPPB 382 complete genome
Length = 3297891
Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats.
Identities = 78/165 (47%), Positives = 93/165 (56%), Gaps = 1/165 (0%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG + +G GVS +G RVA TG+YA +V+A LL VPDGV AA
Sbjct: 739094 GSEAAGVIEALGDGVSGVHVGDRVA---TAEATGTYAEHALVRAETLLPVPDGVDMEVAA 738924
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A+ QGLTAHYL SSYP GPG +VHA AGG GLL+ Q+ RG VI EKA
Sbjct: 738923 ALPLQGLTAHYLATSSYPAGPGDRALVHAGAGGVGLLLTQLLADRGVEVITTVSTEEKAA 738744
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAP-KGVDAVYDGVGQATF 164
L+ + G V + D P VR +GVD VYDGVG+ TF
Sbjct: 738743 LSRAAGATHV----LGYDDVPVRVRELTDGRGVDVVYDGVGRDTF 738621
Score = 59.3 bits (142), Expect = 4e-07, Method: Composition-based stats.
Identities = 56/160 (35%), Positives = 73/160 (45%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G + AG V VG GV+ G+ V G ++A VV A ++ P + A
Sbjct: 2147611 GSDFAGCVAAVGEGVTRFKKGQDVL---GHTVMAAHATHVVVPAGNVVPKPAQLPWEVAG 2147441
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+ GL AH ++ + G G T+VV AAAGG G + Q+A RGARVIG CG
Sbjct: 2147440 GLFLAGLVAHDVL-HAVTVGEGDTLVVTAAAGGVGSIEAQLAMRRGARVIGTCGERNFDY 2147264
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
L R V V +RAAAP GV + D G
Sbjct: 2147263 L-----RQIGVTPVVYGDGLADRIRAAAPNGVQGLVDNFG 2147159
Score = 55.8 bits (133), Expect = 5e-06, Method: Composition-based stats.
Identities = 52/160 (32%), Positives = 71/160 (44%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E +GTV VG G + +G RV + G YA V +L VPDG+ +AA
Sbjct: 1715144 GLEVSGTVAAVGAGATRWGVGDRVC---ALLAGGGYAELVAVDERHVLPVPDGLDLVEAA 1714974
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+ T V PG T++VH + G G + Q+A GARV G K
Sbjct: 1714973 GLPEVVATVWSNVVLDAGLAPGETLLVHGGSSGIGTMAIQLAARLGARVAVTAGSPAKLE 1714794
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
++G AD++IDY L+ A G D V D +G
Sbjct: 1714793 ACRALG-ADILIDYRQQDFVQALLEATDGHGADVVLDAIG 1714677
Score = 52.0 bits (123), Expect = 7e-05, Method: Composition-based stats.
Identities = 42/132 (31%), Positives = 66/132 (50%), Gaps = 4/132 (3%)
Frame = -2
Query: 33 TGSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAG 92
T +YA V S+L+ P + + +AA ++ G TA + + + G G TV+VH +G
Sbjct: 2405210 TAAYADHVVAPPSSLVRRPAALGEEEAAGLMLAGTTAAHAL-HAVGAGAGDTVLVHGGSG 2405034
Query: 93 GTGLLVCQMAKLRGARVIGICG----GAEKAMLATSVGRADVVIDYVATPDWPPLVRAAA 148
G GL+ Q+A++ GA V+ G + + A V + D +RAAA
Sbjct: 2405033 GVGLMAVQLARIAGATVVATASERNHGVLRDLGAIPVAHGEGSADR---------IRAAA 2404881
Query: 149 PKGVDAVYDGVG 160
P+G+DA D VG
Sbjct: 2404880 PQGIDAAVDTVG 2404845
Score = 48.9 bits (115), Expect = 6e-04, Method: Composition-based stats.
Identities = 42/113 (37%), Positives = 53/113 (46%), Gaps = 1/113 (0%)
Frame = -3
Query: 49 EVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGA- 107
EVP + A + GLTA+ + G V V AAG G +V Q+A+L GA
Sbjct: 2356438 EVPGVASSAHLGVLGLTGLTAYVGLTRIASIQEGDVVFVSGAAGAVGSMVGQIARLLGAS 2356259
Query: 108 RVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
RV+G G AEK TS D DY D + AAP G+D +D VG
Sbjct: 2356258 RVVGSAGSAEKVERLTSHLGFDAAFDYHGG-DLEGKLAEAAPDGIDLYFDNVG 2356103
Score = 44.7 bits (104), Expect = 0.011, Method: Composition-based stats.
Identities = 49/166 (29%), Positives = 70/166 (42%), Gaps = 2/166 (1%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCT--GSYAAFTVVQASALLEVPDGVTDAQ 58
G E GTV + PG + A GG+G T G YA +V A++++ + A
Sbjct: 661636 GIEAVGTV-ESAPGGEHEPGTQVAALMGGMGRTFDGGYAEHALVPATSVVPFTSALDWAV 661460
Query: 59 AAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEK 118
AV TAH + + PG T+++ GL +AK+ GA VI ++
Sbjct: 661459 LGAVPEMLQTAHGSLTTGVGVRPGDTLLIRGGTSSVGLASIVLAKMHGATVIATTRNPDR 661280
Query: 119 AMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
A L G VV+D T VRA P GV + +G T
Sbjct: 661279 ADLLRVTGADHVVVD---TGRIAEQVRAIVPGGVSGAIELIGTDTL 661151
Score = 43.5 bits (101), Expect = 0.025, Method: Composition-based stats.
Identities = 28/78 (35%), Positives = 39/78 (50%)
Frame = +2
Query: 34 GSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGG 93
GSYA + V + +L P ++ +AAA LTA +V G V++HA AGG
Sbjct: 3107366 GSYAPYIAVPSVSLARKPARLSHVEAAATPVSALTAWGMVVDIGRAHEGQVVLIHAGAGG 3107545
Query: 94 TGLLVCQMAKLRGARVIG 111
G Q A+ GARV+
Sbjct: 3107546 VGHFAVQFARHFGARVVA 3107599
Score = 37.0 bits (84), Expect = 2.0, Method: Composition-based stats.
Identities = 52/166 (31%), Positives = 78/166 (46%), Gaps = 10/166 (6%)
Frame = -1
Query: 2 EEGAGTVVKVGPGVSETMLGKRVAYFGGVGC--TGSYAAFTVVQASALLEVPDGVTDAQA 59
++GAG + VGPGV++ +G RV TG+ TV+ + +PDG++
Sbjct: 2178408 QDGAGVIDAVGPGVTDLAVGDRVWIMLAAHGRPTGTAQEKTVLPVDRVAPLPDGLSFDLG 2178229
Query: 60 AAVLCQGLTAHYLV----DSSYPCGPGSTVVVH----AAAGGTGLLVCQMAKLRGARVIG 111
A++ +TAH + D PG+ H AG G Q+A+ GA VI
Sbjct: 2178228 ASLGVPAVTAHRALTVSEDGPSRLAPGALAGTHVLVAGGAGAVGHAAIQLARWAGATVIT 2178049
Query: 112 ICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYD 157
EKA LAT+ G VV DY A + +++ AP GVD + +
Sbjct: 2178048 TVSSPEKAALATAAGAHHVV-DYKAG-NAAAEIQSIAPDGVDLIVE 2177917
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
Length = 9105828
Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats.
Identities = 68/168 (40%), Positives = 97/168 (57%), Gaps = 4/168 (2%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E +G V+ VGPGV+ G RVAY+ +G +Y + L+++PD +T Q A
Sbjct: 5075860 GNEASGEVIAVGPGVTNFHPGDRVAYYHNLG---AYTGERNIPWEKLVKLPDHITHEQGA 5075690
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
++ +GLT YL+ ++ P V++HAAAGG GLL CQ A+ GA VIG G EKA
Sbjct: 5075689 VLMLKGLTVWYLLHKTFKVEPHHRVLIHAAAGGIGLLACQWARALGAHVIGTVGSREKAE 5075510
Query: 121 LATSVGRADVVI----DYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
LA + G V++ D+VA + + + +G D VYDGVG+ATF
Sbjct: 5075509 LAEANGCDHVILYNEEDFVAR-----VKQISRNEGCDVVYDGVGKATF 5075381
Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats.
Identities = 72/168 (42%), Positives = 96/168 (57%), Gaps = 4/168 (2%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V ++GPGV++ G RVAY G G+Y+ ++ A LL++PDGV D AA
Sbjct: 6750327 GSEAAGIVEEIGPGVTDLKPGDRVAY--GASPLGAYSEARLIPADRLLKLPDGVDDKTAA 6750154
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A++ +GLT YL+ +Y G T+++HAAAGG GL++ Q AK GA VIG EKA
Sbjct: 6750153 AMMLKGLTTQYLIRQTYRVKAGDTILLHAAAGGVGLILSQWAKHLGATVIGTVSNDEKAK 6749974
Query: 121 LATSVGRADVVI----DYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
LA + G V+I D+V D K V VYD VG+ TF
Sbjct: 6749973 LAKAHGCDHVIIYTREDFVKRVD-----EITGGKKVPVVYDSVGKDTF 6749845
Score = 68.2 bits (165), Expect = 8e-10, Method: Composition-based stats.
Identities = 61/157 (38%), Positives = 81/157 (51%), Gaps = 5/157 (3%)
Frame = +1
Query: 9 VKVGPGVSETMLGKRVAYFGG---VGCTGSYAAFTVVQASALLEVPDGVTDAQAAAVL-C 64
V G G++E + K G G TG + F V A L ++P +V
Sbjct: 101155 VMAGGGIAEVVSSKAPGLAAGDIVFGDTG-WQEFAAVPAKHLTKMPKLEPMTHLLSVFGI 101331
Query: 65 QGLTAHY-LVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLAT 123
GLTA++ L++ P G TVVV AAAG G +V Q+AK++G RVIGI GGA+K T
Sbjct: 101332 AGLTAYFGLLEVGKP-KEGETVVVSAAAGSVGSIVGQIAKIKGCRVIGIAGGADKCNWLT 101508
Query: 124 SVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
S D +DY + L RAAAP G+D +D VG
Sbjct: 101509 SELGFDAAVDYKDGAVFKAL-RAAAPTGIDVYFDNVG 101616
Score = 58.5 bits (140), Expect = 6e-07, Method: Composition-based stats.
Identities = 51/161 (31%), Positives = 78/161 (48%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G + G + ++G GV + +G RVA + GS A + ++A L VP GV A+AA
Sbjct: 7198583 GYDVVGAIDQLGEGVHDFQIGDRVA---DMTVVGSNAEYRTLRADDLARVPVGVDAAEAA 7198413
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A++ TA+ L+ + G V+VH AAG G + + +L G + G G E
Sbjct: 7198412 ALILSWTTAYQLLHRAAKVQRGQRVLVHGAAGAVGQALLVLGRLAGLELWGTVRG-EHMA 7198236
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQ 161
L +G IDY D+ ++ P G D + DGVG+
Sbjct: 7198235 LVRELGATP--IDY-QHEDFTRVL----PGGFDVIVDGVGE 7198134
Score = 57.8 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 54/161 (33%), Positives = 83/161 (51%), Gaps = 1/161 (0%)
Frame = +1
Query: 3 EGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVT-DAQAAA 61
E AG + +GPGV++ +G RV G G+ + A++++++PD + D A
Sbjct: 568423 EVAGVIESIGPGVTDLKVGDRVV--ASCGHNGAREKIAL-PAASIVKIPDNLDYDRAAGI 568593
Query: 62 VLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAML 121
++ G H L D + P PG T+ V AAGGTGL C++ KL G +VI EK
Sbjct: 568594 IIIYGTALHALEDRASP-KPGETLAVLGAAGGTGLAACELGKLMGLKVIACASSDEKLEF 568770
Query: 122 ATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQA 162
A + G A++ ++Y L + KGVD ++D VG A
Sbjct: 568771 AKAHG-AELTLNYGKEDLKEGLRKLTGGKGVDIIFDPVGGA 568890
Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 50/161 (31%), Positives = 78/161 (48%), Gaps = 2/161 (1%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V ++GP +G R+ GG ++A +T+ L P + +AA
Sbjct: 3474777 GMEWAGEVAELGPDAKGVKVGDRIMGSGG----AAFAEYTLADHGRLFRAPSNMNFEEAA 3474610
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGAR-VIGICGGAEKA 119
+ T H V + G +V++ A+ G GL+ Q+AKL+GAR VIG A +
Sbjct: 3474609 TLPVALATMHNAVVTVGGVQAGQSVLIQGASSGVGLMAMQIAKLKGARLVIGSSTDAYRR 3474430
Query: 120 MLATSVGRADVVIDYVATPDW-PPLVRAAAPKGVDAVYDGV 159
T G AD+ +D + P W +++A +GVD + D V
Sbjct: 3474429 GRLTEYG-ADLAVD-SSDPKWVEEVLKATNGEGVDLIVDQV 3474313
Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 40/100 (40%), Positives = 55/100 (55%), Gaps = 1/100 (1%)
Frame = +2
Query: 66 GLTAHY-LVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATS 124
G+TA+ L+D P G TVVV A+G G V Q+AK++GAR +GI GG +K
Sbjct: 4412549 GMTAYTGLLDIGKP-QEGETVVVAGASGAVGSAVGQIAKIKGARAVGIAGGKDKCDYVVK 4412725
Query: 125 VGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
D ID+ PD ++ A PKG+D ++ VG A F
Sbjct: 4412726 ELGFDACIDH-RDPDLAAKLKDACPKGIDVYFENVGGAVF 4412842
Score = 53.1 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 54/164 (32%), Positives = 76/164 (46%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E +G VV VG V+ G RVA TG YA + S + +PDGV AA
Sbjct: 6305625 GTEASGIVVAVGDKVTAFAPGDRVAC---SSWTGGYAERMTAKESKSVRLPDGVAFEAAA 6305795
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
VL TA+Y + G TV + AAGG GL + + G RV+ G +KA
Sbjct: 6305796 TVLHNYGTAYYALVERARAQAGETVFITGAAGGVGLAAVDLGRHFGLRVVAGVGSDDKAA 6305975
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
L G +++V +Y + + + +G+D +D VG A F
Sbjct: 6305976 LVRGYGASEIV-NYRSEDLRDRIKSITSGQGIDVGFDNVGGAVF 6306104
Score = 52.0 bits (123), Expect = 7e-05, Method: Composition-based stats.
Identities = 49/137 (35%), Positives = 68/137 (49%), Gaps = 3/137 (2%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCT--GSYAAFTVVQASALLEVPDGVTDAQ 58
G + AG + +GPGV +G++V G YA + V A A+ +PD V D Q
Sbjct: 3397735 GNDVAGRISALGPGVEGLAVGQKVLLSARDLSQRGGCYADYVVAPADAVHALPDHV-DLQ 3397911
Query: 59 AAAVLCQGLTAHYLV-DSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAE 117
AA L A+ L+ + +P P S +V+ AAGG G + Q+AKL VIG
Sbjct: 3397912 AAVCLSNYQVAYALLHECRHPRAPTSVLVI-GAAGGVGTALVQLAKLAQMTVIGTVSTEA 3398088
Query: 118 KAMLATSVGRADVVIDY 134
KA A + G AD +I Y
Sbjct: 3398089 KAEFAKANG-ADHIIFY 3398136
Score = 48.9 bits (115), Expect = 6e-04, Method: Composition-based stats.
Identities = 46/167 (27%), Positives = 74/167 (44%), Gaps = 2/167 (1%)
Frame = -2
Query: 1 GEEGAGTVVKVGPG-VSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQA 59
G EGAG V+K G ++ ++GK VA GG Y+ + ++A +PDG T A+
Sbjct: 5307833 GNEGAGVVIKTGSSDAAKALMGKTVAMIGG----AMYSQYRTLKARDCQPLPDGTTAAEG 5307666
Query: 60 AAVLCQGLTAHYLVDSSYPCGPGSTVVVH-AAAGGTGLLVCQMAKLRGARVIGICGGAEK 118
A+ LTA + ++ G +VH AAA G ++ ++ G ++ I E+
Sbjct: 5307665 ASWFVNPLTALGMTETMRR--EGHKALVHTAAASNLGQMLNKICIKDGIPLVNIVRSKEQ 5307492
Query: 119 AMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATFA 165
A + +G A V+D L A G +D +G A
Sbjct: 5307491 AEILNKIG-AKYVVDSSVPSFLDDLTAALVETGATIAFDAIGGGKLA 5307354
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 48/174 (27%), Positives = 74/174 (42%), Gaps = 13/174 (7%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G + AG V VGP V+ G V Y G + G+ A F +V + P ++ AQAA
Sbjct: 5918531 GYDAAGVVDAVGPEVTLFKPGDEVFYAGSILRQGTNAEFHLVDERIVGNKPKRLSFAQAA 5918710
Query: 61 AVLCQGLTAHYLVDSSYPCGPGS-----TVVVHAAAGGTGLLVCQMA-KLRGARVIGICG 114
A+ +TA L+ PG T+++ AGG G ++ Q+A +L G V+
Sbjct: 5918711 ALPLTSITAWELLFDRLGAVPGKSVDPRTLLITGGAGGVGSILIQLARRLTGLTVLATAT 5918890
Query: 115 GAEKAMLATSVGRADVVIDY-------VATPDWPPLVRAAAPKGVDAVYDGVGQ 161
E +G A VID+ + PP+ A+ D Y + +
Sbjct: 5918891 RPESQEWCLDLG-AHAVIDHGKPMKEQIEKLKLPPVALVASLTFTDQHYKAIAE 5919049
Score = 45.8 bits (107), Expect = 0.004, Method: Composition-based stats.
Identities = 32/111 (28%), Positives = 51/111 (45%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G + +G +V +G V+E +G +V G+YA + V A + P +T +AA
Sbjct: 8423017 GSDLSGEIVAMGHDVAELAVGDQVYGVTNPQFVGAYAEYAVASAGMVSTKPTSLTHVEAA 8423196
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIG 111
+V +TA + G TVV+ AAG G Q+A+ G + I
Sbjct: 8423197 SVPVVAVTAWQALFDHAQLKAGQTVVIQGAAGNVGSYAVQLARQAGVQTIA 8423349
Score = 45.1 bits (105), Expect = 0.008, Method: Composition-based stats.
Identities = 45/139 (32%), Positives = 65/139 (46%), Gaps = 3/139 (2%)
Frame = +3
Query: 29 GVGCTGSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVH 88
G+ G++A VV+A A++E P V+ +AA + +TA + G TV+V
Sbjct: 3190647 GIRRDGTHATHLVVEADAVVEKPRTVSWEEAAGIGVPFVTAMEGFRRAGVPKAGETVLVF 3190826
Query: 89 AAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADV---VIDYVATPDWPPLVR 145
G G Q+A +GARVIG+ AE T G ++ VID AT +
Sbjct: 3190827 GVNGKVGQAAVQIATWQGARVIGVVRKAE-----TYEGHSNASIEVIDASATDVATWVRE 3190991
Query: 146 AAAPKGVDAVYDGVGQATF 164
A KG D V++ VG F
Sbjct: 3190992 VTAGKGADIVFNTVGDPYF 3191048
Score = 42.0 bits (97), Expect = 0.061, Method: Composition-based stats.
Identities = 53/167 (31%), Positives = 74/167 (44%), Gaps = 3/167 (1%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFT---VVQASALLEVPDGVTDA 57
G E AG V +VG +G +V + AFT VV S L +P A
Sbjct: 6166926 GMEAAGDVTEVGAETRGVAVGDKVI------VKMRHGAFTDEAVVAPSQLTPMPSTFDYA 6166765
Query: 58 QAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAE 117
+AA L TA++ + PG ++VH A GG GL ++ K+ GA VI E
Sbjct: 6166764 EAATYLAGHGTAYHALIDRGRVEPGEVLLVHGAGGGVGLAAVEIGKMLGATVIATASSDE 6166585
Query: 118 KAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
K +A + G AD ++ Y P + R +G D V+D VG F
Sbjct: 6166584 KLAIAKARG-ADHLVRYDREPFRDAVKRITDGRGADVVFDPVGGEVF 6166447
Score = 36.2 bits (82), Expect = 3.7, Method: Composition-based stats.
Identities = 30/105 (28%), Positives = 45/105 (42%)
Frame = -2
Query: 62 VLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAML 121
V+C + H S+ C + +V A+ T L+ C +LR V GIC
Sbjct: 1622414 VICAASSLHRNSASAATCSEVTNSLVGWASSSTSLMTCSRVRLRAFIVSGICFSTSGVQT 1622235
Query: 122 ATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATFAC 166
+ + V++ +VAT LVR A P + D G+AT C
Sbjct: 1622234 *PGLMQLQVIL-WVATSSATVLVRPAMPCLAET*ADLKGEATSEC 1622103
Score = 35.8 bits (81), Expect = 4.5, Method: Composition-based stats.
Identities = 36/125 (28%), Positives = 54/125 (43%), Gaps = 3/125 (2%)
Frame = +2
Query: 34 GSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTA--HYLVDSSYPCGPGS-TVVVHAA 90
G+YA V+ L+ +P G++ A A+ G TA L + P S VVV A
Sbjct: 2784917 GAYAEKARVKGDWLVALPQGLSARDAMAIGTAGFTAMLSVLALEKHGLSPKSGPVVVTGA 2785096
Query: 91 AGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPK 150
AGG G + + G VI G +A +G A+++ + PL +
Sbjct: 2785097 AGGVGSVATAVLSKLGYHVIASTGRTSEADYLKHLGAAEIIDRNELSAPAKPLAKERWAG 2785276
Query: 151 GVDAV 155
GVD+V
Sbjct: 2785277 GVDSV 2785291
>gb|CP001068.1| Ralstonia pickettii 12J chromosome 1, complete sequence
Length = 3942557
Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats.
Identities = 73/164 (44%), Positives = 89/164 (54%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V VG GV+ G RVAY G TG+YAA + A L+ +PD + A
Sbjct: 2476508 GMEAAGVVEAVGQGVTHVKPGDRVAYAGRP--TGAYAALRTMPADILVRLPDAIDFETGA 2476335
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A++ QG+TA YL+ SY PG TV+ HAAAGG GL+ CQ K GA VIG G KA
Sbjct: 2476334 AMMLQGMTAQYLIRDSYRVQPGDTVLFHAAAGGVGLIACQWLKALGATVIGTVGSDAKAE 2476155
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
LA + G D I Y + KGV VYDG+G+ TF
Sbjct: 2476154 LACAHG-CDHTIVYTRENFTERVREITGGKGVPVVYDGIGKDTF 2476026
Score = 62.4 bits (150), Expect = 5e-08, Method: Composition-based stats.
Identities = 39/100 (39%), Positives = 55/100 (55%), Gaps = 3/100 (3%)
Frame = -1
Query: 66 GLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSV 125
G+TA Y ++ PG TV V AA+G G +V Q+AKL+G RV+G GG +K +
Sbjct: 1528088 GVTAWYGLNKIMLPKPGQTVAVSAASGAVGSVVGQLAKLKGCRVVGFAGGKDKCDYVVNE 1527909
Query: 126 GRADVVIDYVATPDWPPL---VRAAAPKGVDAVYDGVGQA 162
D IDY A D L ++ A P G+D+ ++ VG A
Sbjct: 1527908 LGFDACIDYKAASDAKELYKMLKEATPDGIDSYFENVGGA 1527789
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 58/162 (35%), Positives = 78/162 (48%), Gaps = 2/162 (1%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVT-DAQA 59
G E AG V VG GVS G V F G G++A+ A ++ +P G+ D A
Sbjct: 1113846 GSEVAGVVNAVGEGVSHLKAGDHVIAFLG---QGAFASQVKASAKVVMPMPPGMAFDTAA 1113676
Query: 60 AAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKA 119
A L G + H +VD G T++V AAGG GL ++ K GARVI EK
Sbjct: 1113675 AFTLTYGTSHHAVVDRG-QLKAGETMLVLGAAGGVGLAAIEIGKAIGARVIAAASSDEKL 1113499
Query: 120 MLATSVGRADVVIDYVATPDWPPLVRAAAP-KGVDAVYDGVG 160
+ G AD +I+Y +T D ++ KG D +YD VG
Sbjct: 1113498 AVCKDHG-ADALINY-STEDLRECIKELTDGKGPDVIYDPVG 1113379
Score = 45.8 bits (107), Expect = 0.004, Method: Composition-based stats.
Identities = 44/137 (32%), Positives = 61/137 (44%), Gaps = 5/137 (3%)
Frame = -1
Query: 34 GSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGS-----TVVVH 88
G YA F +L VP G++D +AAA+ T V G G+ T++V
Sbjct: 2326970 GGYAEFCTAPLGQVLPVPAGLSDVEAAALPENYFTVWSNVFDRGLLGRGAHGADETLLVQ 2326791
Query: 89 AAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAA 148
+ G G Q+A G RV G AEK +G A I+Y T D+ +V+A
Sbjct: 2326790 GGSSGIGTTAIQIASALGHRVFATAGSAEKCDACVELG-ATRAINY-KTEDFVEIVKAET 2326617
Query: 149 PKGVDAVYDGVGQATFA 165
+G D V D VG + A
Sbjct: 2326616 GRGADVVLDMVGGSYVA 2326566
Score = 40.0 bits (92), Expect = 0.25, Method: Composition-based stats.
Identities = 47/160 (29%), Positives = 70/160 (43%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E +G V +VG V+ G V F YA+ +A+AL P ++ +AA
Sbjct: 1222451 GMEFSGRVTRVGSAVANFASGDLVLGFA----PACYASRLRTRATALAHKPARLSFEEAA 1222284
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+ TA+Y ++ G V+VH AAGG G+ Q+A+ GA V EK
Sbjct: 1222283 TIPTTFFTAYYGLNELARIRKGERVLVHGAAGGVGIAAIQLARHLGAEVFATASSNEKRE 1222104
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
+G A V D + + RA +GVD V + +
Sbjct: 1222103 FVRLLG-ASRVFDSRSLAFADEIRRATGGEGVDVVLNSLA 1221987
>ref|XM_001259549.1| Neosartorya fischeri NRRL 181 quinone oxidoreductase, putative
(NFIA_075830) partial mRNA
Length = 999
Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats.
Identities = 73/169 (43%), Positives = 95/169 (56%), Gaps = 5/169 (2%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSET--MLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQ 58
G EGAGTVV +GPG + +G RVA+ TG YA +T V A+ +++PDG++D
Sbjct: 199 GREGAGTVVALGPGPNHYNFQVGDRVAWLS----TGGYAEYTAVPAAKAVKIPDGISDED 366
Query: 59 AAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEK 118
A GLT L +Y G V++HAAAGG G L+ Q+ K GA VIG GG EK
Sbjct: 367 VMASFLSGLTVLSLAKETYAVQKGDWVLLHAAAGGAGFLMTQILKSIGAHVIGTAGGPEK 546
Query: 119 AMLATSVGRADVVIDYVAT--PDWPPLVRA-AAPKGVDAVYDGVGQATF 164
L +G AD VIDY + DW V+ +GVD VYD VG+ T+
Sbjct: 547 VELVKGLG-ADHVIDYRSEEGKDWVKRVKEITGGRGVDVVYDSVGKDTW 690
>gb|CP000133.1| Rhizobium etli CFN 42, complete genome
Length = 4381608
Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats.
Identities = 71/165 (43%), Positives = 99/165 (60%), Gaps = 1/165 (0%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G+EGAGTV VGP V++ +G RVAY G+Y+ ++A L+ VP G+ AA
Sbjct: 2174178 GKEGAGTVTAVGPDVTDFKVGDRVAY---ASADGAYSVERNIEARHLVHVPGGIELETAA 2174348
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A++ +G+TA YL++ ++ GP + ++ HAAAGG GL+ Q AK GA VIG G +K
Sbjct: 2174349 AMMLKGMTAEYLLNRTFKVGPETVLLFHAAAGGVGLIAGQWAKALGATVIGTAGSEDKVA 2174528
Query: 121 LATSVGRADVVIDYVATPDWPPLVR-AAAPKGVDAVYDGVGQATF 164
LA G D VI+Y + D+ VR KGVD VYD +G+ TF
Sbjct: 2174529 LALEHGY-DHVINY-KSEDFVGRVRDITGGKGVDVVYDSIGRDTF 2174657
Score = 83.6 bits (205), Expect = 2e-14, Method: Composition-based stats.
Identities = 66/168 (39%), Positives = 89/168 (52%), Gaps = 4/168 (2%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V VG GVS G RVAY G G+Y + + A +++PD V+ AA
Sbjct: 1175961 GAEAAGIVEDVGAGVSMFGRGDRVAYAGPP--VGAYRSARNIAAERAIKLPDAVSAKTAA 1175788
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+ L +G+TA+ L+ +Y G +++HAAAGG G ++ + AK A VIG G AEKA
Sbjct: 1175787 SSLLKGMTAYMLLKKTYDVRAGMQILIHAAAGGLGSILVRWAKSLDATVIGTVGSAEKAA 1175608
Query: 121 LATSVGRADVVI----DYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
LA S G ++I D VA + R GVD YDG+G T
Sbjct: 1175607 LAASCGADHLIIGRDADIVAE-----VKRLTNGLGVDVAYDGIGGDTL 1175479
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 51/134 (38%), Positives = 66/134 (49%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G + AGTVVKVG GV G V G++A F + + P ++ ++AA
Sbjct: 473040 GHDLAGTVVKVGSGVRRFKAGDEVYARPRDHRVGTFAEFIAIDEADAALKPGNLSMSEAA 473219
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+V GLTA + PG V + A +GG G Q+AK GA V AE A
Sbjct: 473220 SVPLVGLTAWQALVEVGKIKPGQKVFIQAGSGGVGTFAIQLAKHLGATVATTTTSAENAE 473399
Query: 121 LATSVGRADVVIDY 134
LA S+G ADVVIDY
Sbjct: 473400 LARSLG-ADVVIDY 473438
Score = 59.3 bits (142), Expect = 4e-07, Method: Composition-based stats.
Identities = 61/192 (31%), Positives = 85/192 (44%), Gaps = 27/192 (14%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGC-------------------------TGS 35
G E +G V +GPGV+ + G+ V+ +G C G
Sbjct: 2586496 GAEASGVVEAIGPGVANVLPGQLVSIYGARTCGLCRPCREGRDNLCEHVSGVHGFHLDGF 2586317
Query: 36 YAAFTVVQASALLEVPDGVTDAQAA-AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGT 94
+ A L+ P GV AA A + G H L D++ PG TV+VHA G
Sbjct: 2586316 AQEKVNLPARLLVPAPPGVDAIGAALAPVTFGTVEHMLFDNA-KLEPGETVLVHAGGSGI 2586140
Query: 95 GLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRA-AAPKGVD 153
G Q+AK G VI G +K A ++G AD VI+Y T + +VR KGVD
Sbjct: 2586139 GTAAIQLAKKIGCTVITTVGSDDKIEKAKALG-ADHVINY-RTDRFEGVVRKLTKKKGVD 2585966
Query: 154 AVYDGVGQATFA 165
V++ VG+ T+A
Sbjct: 2585965 VVFEHVGKDTWA 2585930
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 49/164 (29%), Positives = 77/164 (46%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E +G +V VGPGVS +G +V G+ G+YA + ++ A +L P G +AA
Sbjct: 1193500 GLELSGEIVGVGPGVSGYAVGDKVC---GLANGGAYAEYCLLPAGQILPFPKGYDAVKAA 1193670
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A+ T + G +V++H G G Q+A+ GA V G K
Sbjct: 1193671 ALPETFFTVWANLFQMAGLTEGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCE 1193850
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
+G A I+Y + D+ +++A +GVD + D +G A F
Sbjct: 1193851 ACERLG-AKRGINY-RSEDFAAVIKAETGQGVDIILDMIGAAYF 1193976
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 53/187 (28%), Positives = 70/187 (37%), Gaps = 26/187 (13%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCT------------------------GSY 36
G E AG VV G GV +G RV GC GS+
Sbjct: 1242715 GHELAGRVVATGRGVMRFKVGDRVTVPFVSGCGHCSECHSGNQQVCPNQFQPGFTHWGSF 1242536
Query: 37 AAFTVVQ--ASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGT 94
A + + + L+ +PD + DA AA++ C+ T+ V GPG + VH GG
Sbjct: 1242535 AEYVAIDYADTNLVHLPDTIEDATAASLGCRFATSFRAVADHARTGPGEWIAVH-GCGGV 1242359
Query: 95 GLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDA 154
GL +A GA IGI EK A G A ++ D VR G
Sbjct: 1242358 GLSAIMIATALGANAIGIDISEEKLAFARECG-AVATVNASGVADVAEAVREITKGGAHV 1242182
Query: 155 VYDGVGQ 161
D +G
Sbjct: 1242181 SIDALGH 1242161
Score = 35.0 bits (79), Expect = 7.7, Method: Composition-based stats.
Identities = 36/123 (29%), Positives = 54/123 (43%), Gaps = 1/123 (0%)
Frame = -2
Query: 12 GPGVSET-MLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAH 70
GPG + T R ++ GV + TV+ P + +A+ + C GLTA
Sbjct: 3449438 GPGTAHTPHYQTRGGFYPGV-----LSEHTVLSEEWFTLAPATLDAGEASTLPCAGLTAW 3449274
Query: 71 YLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADV 130
+ + G V+V GG L Q+AK GA V G EK A+++G AD
Sbjct: 3449273 FALIECGRLKAGEKVLVQ-GTGGVALFGLQIAKAHGAEVFITSGSTEKLERASALG-ADH 3449100
Query: 131 VID 133
+I+
Sbjct: 3449099 LIN 3449091
>dbj|AP009385.1| Burkholderia multivorans ATCC 17616 DNA, complete genome, chromosome 1
Length = 3448421
Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats.
Identities = 73/164 (44%), Positives = 94/164 (57%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V VG GV+ +G RVAY G+YA V+ A ++++PDG+ AA
Sbjct: 2442908 GMEAAGEVTAVGEGVTALKVGDRVAYVAQP--PGAYAQERVLSAERVVKLPDGIGYDDAA 2442735
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+V+ QGLTAHYL+ +YP G T+++HAAAGG GLLVCQ AK GA VIG G EKA
Sbjct: 2442734 SVMLQGLTAHYLLRRTYPVKAGDTILIHAAAGGVGLLVCQWAKALGATVIGTVGSDEKAE 2442555
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
LA + G D I Y + GV VYD +G+ T+
Sbjct: 2442554 LAKAHG-CDHPIVYTRENFTQRVKEITNGAGVPVVYDSIGKDTY 2442426
Score = 49.7 bits (117), Expect = 3e-04, Method: Composition-based stats.
Identities = 33/83 (39%), Positives = 42/83 (50%)
Frame = -2
Query: 82 GSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWP 141
G T+VV AA+G G +V Q+AK G R +GI GG +K D +DY A
Sbjct: 2005033 GDTIVVSAASGAVGCVVGQLAKRAGCRAVGIAGGPDKCRYVVDTLGFDACVDYKAGRLVD 2004854
Query: 142 PLVRAAAPKGVDAVYDGVGQATF 164
L AA P GVD ++ VG A
Sbjct: 2004853 DLA-AATPDGVDGCFENVGGAVL 2004788
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 61/163 (37%), Positives = 76/163 (46%), Gaps = 1/163 (0%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVT-DAQA 59
G E AG + VG GV++ G V F G G V Q +AL P G+T D A
Sbjct: 1365215 GAEFAGVIDAVGDGVTDWRPGDAVVAFTGHGGFAEQCLADVRQIAAL---PPGMTFDQGA 1365385
Query: 60 AAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKA 119
A VL G + H L + G T++V AAGG GL ++AK GARVI A+K
Sbjct: 1365386 ALVLAYGTSLHALQQRAR-LQAGETLLVLGAAGGVGLAAIEIAKALGARVIAAASSADKL 1365562
Query: 120 MLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQA 162
L + G AD IDY + +G D VYD VG A
Sbjct: 1365563 ALCRAAG-ADDTIDYATDDLRRRVDELTGGRGADVVYDPVGGA 1365688
Score = 40.4 bits (93), Expect = 0.17, Method: Composition-based stats.
Identities = 38/118 (32%), Positives = 53/118 (44%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E +G V +VG V+ G V FG S+ V Q SAL +P ++ AA
Sbjct: 696925 GLEFSGVVERVGRKVTGYKAGDAVVGFG----PASFGNVVVTQPSALSHIPRSLSFEAAA 696758
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEK 118
+ T +Y + PG V++H AAGG G+ Q A+ GA + G EK
Sbjct: 696757 TIPSTFFTVYYALHHLARLEPGERVLIHGAAGGVGIAAIQFAQWIGAEIHASAGSDEK 696584
>gb|CP000868.1| Burkholderia multivorans ATCC 17616 chromosome 1, complete sequence
Length = 3448466
Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats.
Identities = 73/164 (44%), Positives = 94/164 (57%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V VG GV+ +G RVAY G+YA V+ A ++++PDG+ AA
Sbjct: 1081865 GMEAAGEVTAVGEGVTALKVGDRVAYVAQP--PGAYAQERVLSAERVVKLPDGIGYDDAA 1082038
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+V+ QGLTAHYL+ +YP G T+++HAAAGG GLLVCQ AK GA VIG G EKA
Sbjct: 1082039 SVMLQGLTAHYLLRRTYPVKAGDTILIHAAAGGVGLLVCQWAKALGATVIGTVGSDEKAE 1082218
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
LA + G D I Y + GV VYD +G+ T+
Sbjct: 1082219 LAKAHG-CDHPIVYTRENFTQRVKEITNGAGVPVVYDSIGKDTY 1082347
Score = 49.7 bits (117), Expect = 3e-04, Method: Composition-based stats.
Identities = 33/83 (39%), Positives = 42/83 (50%)
Frame = +3
Query: 82 GSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWP 141
G T+VV AA+G G +V Q+AK G R +GI GG +K D +DY A
Sbjct: 1519740 GDTIVVSAASGAVGCVVGQLAKRAGCRAVGIAGGPDKCRYVVDTLGFDACVDYKAGRLVD 1519919
Query: 142 PLVRAAAPKGVDAVYDGVGQATF 164
L AA P GVD ++ VG A
Sbjct: 1519920 DLA-AATPDGVDGCFENVGGAVL 1519985
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 61/163 (37%), Positives = 76/163 (46%), Gaps = 1/163 (0%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVT-DAQA 59
G E AG + VG GV++ G V F G G V Q +AL P G+T D A
Sbjct: 2159558 GAEFAGVIDAVGDGVTDWRPGDAVVAFTGHGGFAEQCLADVRQIAAL---PPGMTFDQGA 2159388
Query: 60 AAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKA 119
A VL G + H L + G T++V AAGG GL ++AK GARVI A+K
Sbjct: 2159387 ALVLAYGTSLHALQQRAR-LQAGETLLVLGAAGGVGLAAIEIAKALGARVIAAASSADKL 2159211
Query: 120 MLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQA 162
L + G AD IDY + +G D VYD VG A
Sbjct: 2159210 ALCRAAG-ADDTIDYATDDLRRRVDELTGGRGADVVYDPVGGA 2159085
Score = 40.4 bits (93), Expect = 0.17, Method: Composition-based stats.
Identities = 38/118 (32%), Positives = 53/118 (44%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E +G V +VG V+ G V FG S+ V Q SAL +P ++ AA
Sbjct: 2827848 GLEFSGVVERVGRKVTGYKAGDAVVGFG----PASFGNVVVTQPSALSHIPRSLSFEAAA 2828015
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEK 118
+ T +Y + PG V++H AAGG G+ Q A+ GA + G EK
Sbjct: 2828016 TIPSTFFTVYYALHHLARLEPGERVLIHGAAGGVGIAAIQFAQWIGAEIHASAGSDEK 2828189
>gb|EU686586.1| Uncultured bacterium AD106-G4 genomic sequence
Length = 42065
Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats.
Identities = 74/164 (45%), Positives = 92/164 (56%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G EGAG V VG GVSE +G RVAY +G SY+ V+ + L+++PDG+ D QAA
Sbjct: 31197 GSEGAGVVEAVGEGVSEVAVGDRVAYCMSIG---SYSQRRVIASRLLVKIPDGIRDDQAA 31367
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A++ +G T YL+ +Y P T++ HAAAGG GLL CQ AK GA VIG G EKA
Sbjct: 31368 AMMLKGCTVQYLLRRTYRVEPNETILFHAAAGGCGLLACQWAKHLGATVIGTVGTPEKAE 31547
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
LA + G D I Y + GV VYD VG TF
Sbjct: 31548 LAKAHG-CDYPIVYTREDFVERVKEITNGAGVPVVYDSVGNDTF 31676
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
Length = 4352825
Score = 108 bits (271), Expect = 4e-22, Method: Composition-based stats.
Identities = 75/165 (45%), Positives = 99/165 (60%), Gaps = 1/165 (0%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V VGPGVS +G+RV Y G G G+YA V+ + LL +PD +TD QAA
Sbjct: 4160065 GLEAAGVVEAVGPGVSLVAVGQRVCY--GTGPLGAYADRRVMPENTLLAIPDTITDTQAA 4159892
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
++ +G+T YL+ ++P G TV++HAAAGG GL+ CQ K G IG G EKA
Sbjct: 4159891 GMMLRGMTVRYLIRQTFPVQSGMTVLLHAAAGGVGLIACQWLKHLGVTTIGTVGSDEKAA 4159712
Query: 121 LATSVGRADVVIDYVATPDWPPLVRA-AAPKGVDAVYDGVGQATF 164
LA + G + VI+Y +T ++ VR +GV VYDGVG A F
Sbjct: 4159711 LARAHGCSH-VINY-STENFVERVREITGGQGVPVVYDGVGAAVF 4159583
Score = 59.3 bits (142), Expect = 4e-07, Method: Composition-based stats.
Identities = 54/164 (32%), Positives = 75/164 (45%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG +++VGP V + G+RV + G YA V A + + D + A
Sbjct: 3887861 GFEVAGDILEVGPEVLDLRPGQRVM---AILDQGGYADQVVAPARDVHALTDRMDLLAAG 3887691
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
T+H+ + PG V++H AAGG GL + AK GA VI GGA++
Sbjct: 3887690 GFPIAYGTSHFGLTDRCRLRPGEIVLIHGAAGGVGLTAVECAKALGATVIATAGGADRLE 3887511
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
+A G AD ID+ + +GVD VYD VG F
Sbjct: 3887510 IARQHG-ADYGIDHRNENIKARVRELTGGRGVDVVYDPVGGDVF 3887382
Score = 51.6 bits (122), Expect = 8e-05, Method: Composition-based stats.
Identities = 47/100 (47%), Positives = 58/100 (58%), Gaps = 1/100 (1%)
Frame = -2
Query: 66 GLTAHY-LVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATS 124
GLTA+ L+D P PG TVVV AA G G V Q+AKL+GARV+ I GGAEK A
Sbjct: 557335 GLTAYVGLLDIGKP-QPGETVVVAAATGAVGATVVQIAKLKGARVVAIAGGAEKTAYARE 557159
Query: 125 VGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
ADV ID+ P + + A PKG+D ++ VG F
Sbjct: 557158 TLGADVAIDH-HDPAFAQTLATACPKGIDVYFENVGGKVF 557042
Score = 48.5 bits (114), Expect = 7e-04, Method: Composition-based stats.
Identities = 52/163 (31%), Positives = 75/163 (46%), Gaps = 3/163 (1%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSET-MLGKRV-AYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQ 58
G E AGT+V +G E +G RV A G G YA + A+ + VP + +
Sbjct: 1250628 GLEVAGTIVAIGAKAGEGWRIGDRVCALLSG----GGYAQYASADAALCMPVPQTLGLDE 1250461
Query: 59 AAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEK 118
AAA+ T + + G +++VH + G G QMAK G V G EK
Sbjct: 1250460 AAALPETFFTVWHNLFQRARLQEGESLLVHGGSSGIGTTAIQMAKAFGVTVYVTAGTPEK 1250281
Query: 119 AMLATSVGRADVVIDYVATPDWPPLVRA-AAPKGVDAVYDGVG 160
++G AD I+Y T D+P +++ +GVD V D VG
Sbjct: 1250280 CAACEALG-ADRAINY-RTEDYPTVIKELTGGRGVDVVLDMVG 1250158
Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats.
Identities = 29/100 (29%), Positives = 49/100 (49%), Gaps = 2/100 (2%)
Frame = +3
Query: 34 GSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYP--CGPGSTVVVHAAA 91
GS+A FT VQ+ ++ P +T ++A+ + TA+ ++ P PG V++ A+
Sbjct: 3529188 GSFAQFTRVQSQQVMARPRHLTWEESASYVLVLATAYRMLFGHRPHVLRPGHNVLIWGAS 3529367
Query: 92 GGTGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVV 131
GG G + Q+ GA IG+ K S+G V+
Sbjct: 3529368 GGLGSMAIQLCATAGANAIGVISDETKRDFVMSLGAKGVI 3529487
>ref|XM_002144924.1| Penicillium marneffei ATCC 18224 quinone oxidoreductase, putative,
mRNA
Length = 1668
Score = 108 bits (271), Expect = 4e-22, Method: Composition-based stats.
Identities = 74/170 (43%), Positives = 95/170 (55%), Gaps = 6/170 (3%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSET---MLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDA 57
G E AGT+V +GPG +G RV + G YA +T V A +++PDGV+D
Sbjct: 202 GREAAGTIVALGPGAPNPYGFQVGDRVIWMSVSG----YAQYTAVPAKTAIKIPDGVSDE 369
Query: 58 QAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAE 117
A GLT LV +Y G V+VHAAAGG G+L+ Q+ K GA VIG GGAE
Sbjct: 370 DLVASFLSGLTVLTLVKETYAVQKGDIVLVHAAAGGAGILMVQILKSLGAVVIGTAGGAE 549
Query: 118 KAMLATSVGRADVVIDYVAT--PDWPPLVRAAAP-KGVDAVYDGVGQATF 164
K L S+G AD VIDY + DW +V+ +GVD VYD VG+ T+
Sbjct: 550 KVALVKSLG-ADHVIDYRSEEGKDWVKIVKKITNGRGVDVVYDSVGKDTW 696
>emb|AM747720.1| Burkholderia cenocepacia J2315 chromosome 1, complete genome
Length = 3870082
Score = 108 bits (271), Expect = 4e-22, Method: Composition-based stats.
Identities = 74/164 (45%), Positives = 94/164 (57%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V VG GV+ G RVAY G G+YA V+ A ++++PDG+ AA
Sbjct: 2641695 GMEAAGEVTAVGDGVTAFKAGDRVAYVGQP--PGAYAQERVMPAERIVKLPDGIGYDDAA 2641522
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+V+ QGLTAHYL+ +YP G T+++HAAAGG GLLVCQ AK GA VIG G EKA
Sbjct: 2641521 SVMLQGLTAHYLLRRTYPVKAGDTILIHAAAGGVGLLVCQWAKALGATVIGTVGSDEKAE 2641342
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
LA + G D I Y + GV VYD +G+ T+
Sbjct: 2641341 LAKAHG-CDHPIVYTRENFTQRVKAITNGAGVPVVYDSIGKDTY 2641213
Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 66/164 (40%), Positives = 91/164 (55%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V VGPGV+ +G RV Y G + G+Y+ ++ A+ L+ +P G+ AA
Sbjct: 1918135 GVEAAGVVEAVGPGVTNVAVGDRVTYTGFLNTLGAYSTERLIPAAPLVRLPAGIACETAA 1918314
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A+ +GLT+ YL+ + PG T+++HAAAGG GL+V Q AKL G VIG KA
Sbjct: 1918315 AMTMRGLTSAYLLRRIHAFAPGDTILLHAAAGGVGLIVSQWAKLLGLNVIGTVSSEHKAA 1918494
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
+A + G D IDY + GVD V+D VG+ TF
Sbjct: 1918495 IARAHG-CDHTIDYSREDVAKRVRELTDGAGVDVVFDSVGKDTF 1918623
Score = 78.2 bits (191), Expect = 7e-13, Method: Composition-based stats.
Identities = 61/162 (37%), Positives = 82/162 (50%), Gaps = 2/162 (1%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVA--YFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQ 58
G E GTV VG V + +G RVA FG + TG YA + + A+ + +PD V+D
Sbjct: 1317336 GSEVVGTVAAVGANVRDIRIGARVAAPLFGAMRATGGYAEYVTLGAALITAIPDEVSDDD 1317157
Query: 59 AAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEK 118
A AV+ QGL A L+ + P TV + AAAGG G ++ Q+A+L GAR I GA
Sbjct: 1317156 AVAVMLQGLVARVLLRET-PVA-ARTVAITAAAGGVGSMLIQLARLDGARSITGLAGAPA 1316983
Query: 119 AMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
+ A AD I Y L A +G D V+D +G
Sbjct: 1316982 KLHAVRTLGADRAISYRDAHWADQLSDATGREGPDVVFDSIG 1316857
Score = 66.6 bits (161), Expect = 2e-09, Method: Composition-based stats.
Identities = 43/106 (40%), Positives = 57/106 (53%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G +GAGTVV V +LG+RVAY +G GS+A +T V A LL VPD + AA
Sbjct: 1454768 GVDGAGTVVAVADDAMRHLLGRRVAYHQALGEHGSFAEYTPVAAGVLLTVPDTLDFETAA 1454947
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRG 106
+V C LTA ++ PC ++V A G G + Q+A RG
Sbjct: 1454948 SVPCPALTAWQALE-KVPCRAAREILVSGAGGAVGNYLVQIAAARG 1455082
Score = 55.5 bits (132), Expect = 6e-06, Method: Composition-based stats.
Identities = 56/163 (34%), Positives = 76/163 (46%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG + VG GV+ G V F G G +A + V A L +P G+T Q A
Sbjct: 1461796 GAEFAGVIDAVGDGVTAWRPGDSVMAFTG---HGGFAEYCVADAHQLAALPPGMTFEQGA 1461966
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A++ T+ + + G T++V AAGG G+ ++AK GARVI A+K
Sbjct: 1461967 ALVLAYGTSLHALQQRARLQAGETLLVLGAAGGVGIAAIEIAKALGARVIAAASSADKLA 1462146
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQAT 163
L G AD IDY + +G D VYD VG A+
Sbjct: 1462147 LCREAG-ADETIDYATEDLRRRVDELTGGRGADVVYDPVGGAS 1462272
Score = 38.5 bits (88), Expect = 0.69, Method: Composition-based stats.
Identities = 43/133 (32%), Positives = 62/133 (46%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E +G VV+VG V++ G V F S+A +A A+ P+ ++ +AA
Sbjct: 3516428 GMELSGRVVRVGRAVTKFAPGDAVLGFA----PASFATRVRTRAQAIAPKPERLSFEEAA 3516261
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
V TA+Y + G V+VH AGG G+ Q+A+ GA V G EK
Sbjct: 3516260 TVPTTFFTAYYALVELARLRRGERVLVHGGAGGVGIAAIQLARHFGAEVFATAGSDEKRE 3516081
Query: 121 LATSVGRADVVID 133
+G AD V+D
Sbjct: 3516080 FVRLLG-ADHVLD 3516045
Score = 36.2 bits (82), Expect = 3.8, Method: Composition-based stats.
Identities = 49/162 (30%), Positives = 67/162 (41%), Gaps = 7/162 (4%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVV--QASAL----LEVPDGV 54
G + AGTVV VG V+ G V Y G + G+ + F V + +AL L+
Sbjct: 2042207 GWDAAGTVVAVGADVTLFRPGDEVFYAGSITRPGANSEFHAVDERIAALKPRTLDFAAAA 2042028
Query: 55 TDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGA-RVIGIC 113
A + L V S G +V++ AGG G + Q+AK G VI
Sbjct: 2042027 ALPLTALTAWEALFDRLRV-SPQGADAGKSVLIIGGAGGVGSIAIQLAKTLGKLHVIATA 2041851
Query: 114 GGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAV 155
A S+G AD V+D+ D P +R A VD V
Sbjct: 2041850 SRPASADWVRSLG-ADAVVDHFG--DLPAQLREAGHPSVDYV 2041734
Score = 35.8 bits (81), Expect = 4.2, Method: Composition-based stats.
Identities = 41/138 (29%), Positives = 60/138 (43%), Gaps = 2/138 (1%)
Frame = -3
Query: 29 GVGCTGSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVH 88
GVG GS+A + V+ A+ + P +T +AA V +TA+ + + V+V
Sbjct: 387293 GVGRDGSHAEWLVLDAAHVRRKPGVLTLDEAAGVGVPFVTAYEGLRRAGMPTADDVVLVF 387114
Query: 89 AAAGGTGLLVCQMAKLRGARVIGI--CGGAEKAMLATSVGRADVVIDYVATPDWPPLVRA 146
A G G Q+A RGA VIG+ GA + + V D VA + +
Sbjct: 387113 GANGKVGQAAIQLATARGATVIGVERGPGAYRGHASGDVPMIDASSRTVAD----AVRKL 386946
Query: 147 AAPKGVDAVYDGVGQATF 164
G D VY+ VG F
Sbjct: 386945 TGGHGADIVYNTVGSPYF 386892
>gb|CP000804.1| Roseiflexus castenholzii DSM 13941, complete genome
Length = 5723298
Score = 108 bits (271), Expect = 5e-22, Method: Composition-based stats.
Identities = 75/164 (45%), Positives = 96/164 (58%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V VGP V++ +G RV Y G+YA + +V A+ L VP+GV QAA
Sbjct: 2662605 GMEAAGVVDAVGPDVNDVRVGDRVVY---AMRQGAYAEYAIVPAAMLAPVPEGVDLQQAA 2662435
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
AV+ QG+TAHYL S+YP G ++HAAAGG GLL+ Q+AK GARVIG EKA
Sbjct: 2662434 AVMLQGMTAHYLAYSTYPLRQGDVALIHAAAGGVGLLLVQIAKRCGARVIGTVSTEEKAA 2662255
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
LA + G D+++ Y + R GV VYD VG+ TF
Sbjct: 2662254 LARAAGADDMIL-YTQEDFSAAVRRLTDGAGVHVVYDSVGKTTF 2662126
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 43/127 (33%), Positives = 65/127 (51%)
Frame = -1
Query: 34 GSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGG 93
G YA VV A + +P+ ++ +AAA+ LTA + + G TV++HA A G
Sbjct: 1473819 GGYAELAVVPAGIAMRIPENLSFEEAAAIPEAFLTAFLNLFAMGKLQTGETVLIHAGASG 1473640
Query: 94 TGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVD 153
G Q+A++ GARV G AEK L +G A++ I+Y ++ A +GVD
Sbjct: 1473639 VGTAAIQLARVAGARVFATAGSAEKLALCRELG-AELAINYREESFAMRVLEATGSRGVD 1473463
Query: 154 AVYDGVG 160
+ D VG
Sbjct: 1473462 LILDFVG 1473442
Score = 45.1 bits (105), Expect = 0.009, Method: Composition-based stats.
Identities = 51/158 (32%), Positives = 65/158 (41%), Gaps = 25/158 (15%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAY-FGGVGC------------------------TGS 35
G EG G V VGPGV+ G RVA + G C G+
Sbjct: 5703418 GHEGVGIVESVGPGVTNVKEGDRVAIPWLGYACGDCKYCASGWETLCERQLNTGYFLDGA 5703239
Query: 36 YAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTG 95
YA + A + VP GV+ AA + C G+T + V S P V V GG G
Sbjct: 5703238 YAQYAKAFAKYVGIVPQGVSPLDAAPLTCAGVTTYKAVKVS-GARPSELVAVF-GVGGLG 5703065
Query: 96 LLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVID 133
L Q AK+ GA V I E+ A +G AD+ I+
Sbjct: 5703064 HLALQYAKIAGATVAAIDLLDERLQTARELG-ADITIN 5702954
Score = 39.3 bits (90), Expect = 0.45, Method: Composition-based stats.
Identities = 39/139 (28%), Positives = 61/139 (43%), Gaps = 3/139 (2%)
Frame = -3
Query: 30 VGCTGSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHA 89
+G G + + VV A+ + VP + D QAA L TA ++ + PG V+ +A
Sbjct: 2857111 MGAAGLWQEYVVVPAARTIPVPATIGDRQAATALINPATAWLMLTDTLRVEPGEWVLQNA 2856932
Query: 90 AAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAA- 148
A G V ++A+ G R I + E ++G D++ + D + R A
Sbjct: 2856931 ANSIVGRHVIRLAQRLGFRTINVVRRREVMDDLRTLGADDIICE----QDENVVARVHAL 2856764
Query: 149 --PKGVDAVYDGVGQATFA 165
KGV D VG A+ A
Sbjct: 2856763 TGGKGVRYALDSVGGASGA 2856707
>ref|XM_001822056.1| Aspergillus oryzae RIB40 hypothetical protein partial mRNA
Length = 999
Score = 108 bits (270), Expect = 6e-22, Method: Composition-based stats.
Identities = 75/169 (44%), Positives = 97/169 (57%), Gaps = 5/169 (2%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSET--MLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQ 58
G EGAGTVV +G G + +G RVA+ TG YA +T V A+ +++PD +TD
Sbjct: 199 GREGAGTVVALGSGPNPYGFKVGDRVAWM----TTGGYAEYTAVPAAKTVKIPDEITDED 366
Query: 59 AAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEK 118
A A GLT L +Y G V++HAAAGG G L+ Q+ K GA+VIG GG EK
Sbjct: 367 AIAGFLSGLTVITLAKETYAVQKGDWVLLHAAAGGAGFLMTQVLKSLGAKVIGTAGGPEK 546
Query: 119 AMLATSVGRADVVIDYVAT--PDWPPLVRAAAP-KGVDAVYDGVGQATF 164
L S+G ADVVIDY + DW V+ +GVD VYD VG+ T+
Sbjct: 547 VALVKSLG-ADVVIDYRSEEGKDWVKKVKEVTDGRGVDVVYDSVGKDTW 690
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
Length = 4892717
Score = 108 bits (270), Expect = 6e-22, Method: Composition-based stats.
Identities = 69/168 (41%), Positives = 97/168 (57%), Gaps = 4/168 (2%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG VV VGP V+ G RVAY+ +G YA ++A+ L+++PD +T Q A
Sbjct: 2950748 GNEAAGEVVAVGPHVTNFHPGDRVAYYSNLG---GYATERNIEATKLVKLPDHITYEQGA 2950918
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
++ +GLT YL+ ++ PG V++HAAAGG GLL CQ A+ GA VIG G KA
Sbjct: 2950919 VLMLKGLTVWYLLHKTFKVEPGHRVLIHAAAGGIGLLACQWARALGAHVIGTVGSKAKAD 2951098
Query: 121 LATSVGRADVVI----DYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
LA + G V++ D+VA + + + + D VYDGVG+ TF
Sbjct: 2951099 LALANGCDHVILYNEEDFVAR-----VKQISRNELCDVVYDGVGKTTF 2951227
Score = 63.2 bits (152), Expect = 3e-08, Method: Composition-based stats.
Identities = 48/137 (35%), Positives = 68/137 (49%)
Frame = -3
Query: 29 GVGCTGSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVH 88
G C G+ A + V A+ LE+P G+ AQ AA+ LTA ++ + PG TV+V
Sbjct: 1716600 GEHCDGTMAEYVCVPAANALEIPAGLDFAQGAALGVNYLTAWRMLFTKAKLQPGETVLVF 1716421
Query: 89 AAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAA 148
GG Q+AK GARV+ AEK A + G AD VID A ++
Sbjct: 1716420 GIGGGVSFAALQIAKAAGARVLVTSRSAEKLNRAAAHG-ADAVIDAPADKIPAAVMALTG 1716244
Query: 149 PKGVDAVYDGVGQATFA 165
+GVD V + +G A ++
Sbjct: 1716243 GRGVDVVIENIGGAMWS 1716193
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 55/189 (29%), Positives = 78/189 (41%), Gaps = 25/189 (13%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGC----------------TGSYAAFTV--- 41
G E +GT+ VG GV+ G++V +G + C G F V
Sbjct: 2337965 GAEASGTIEAVGDGVTRFTPGQKVVMYGALTCGHCKACLEGRDNFCENVGGLIGFHVDGF 2337786
Query: 42 ------VQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTG 95
+ A ++ VPDGV+ AA T +++ + PG T++VHA G G
Sbjct: 2337785 ARELMNIPARLVIPVPDGVSLRDAACAPIAFSTVQHMLFDNAKLQPGETILVHAGGSGIG 2337606
Query: 96 LLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAV 155
+ MAK G VI G K +G AD VI+Y + KGVD V
Sbjct: 2337605 TVAIMMAKAIGCTVITTVGDDSKIEGVKKLG-ADYVINYRNDRFEHETRKITKKKGVDVV 2337429
Query: 156 YDGVGQATF 164
++ VG TF
Sbjct: 2337428 FEHVGADTF 2337402
Score = 60.8 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 46/141 (32%), Positives = 66/141 (46%), Gaps = 9/141 (6%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAY---------FGGVGCTGSYAAFTVVQASALLEVP 51
G + AG +VKVG GV G RV G G A +A L+ +P
Sbjct: 1413503 GLDVAGEIVKVGEGVEGWKAGDRVLVDPLNRVEGGLMGETMNGGLAELCKARAHQLVRIP 1413682
Query: 52 DGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIG 111
D V+ QAAA+ TAH ++ ++ G V++ A+GG G+ Q+AK+ GA VI
Sbjct: 1413683 DNVSFEQAAALPVAYGTAHRMMTTNGHVKAGEKVLILGASGGVGVCCVQLAKIAGAYVIA 1413862
Query: 112 ICGGAEKAMLATSVGRADVVI 132
G EK VG +V++
Sbjct: 1413863 CAGSEEKGQRLKEVGADEVIL 1413925
Score = 60.1 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 43/96 (44%), Positives = 56/96 (58%), Gaps = 1/96 (1%)
Frame = +2
Query: 66 GLTAHY-LVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATS 124
GLTA++ L+D P G TVVV AAAG G +V Q+AK++G RV+GI GG K +
Sbjct: 305795 GLTAYFGLLDVGKPVA-GETVVVSAAAGSVGSIVGQIAKIKGCRVVGIAGGRAKCDWLVN 305971
Query: 125 VGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
D +DY + L RAAAP G+D +D VG
Sbjct: 305972 ELGFDAAVDYKDGALFKAL-RAAAPNGIDVYFDNVG 306076
Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 49/160 (30%), Positives = 74/160 (46%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG VV +G G ++ LG +V + G YA + + Q + + VP G + +A
Sbjct: 4808618 GLEIAGEVVALGEGATKHKLGDKVM---SLVAGGGYAQYCIAQDAQAMTVPAGYSMIEAG 4808788
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A +T + V PG T++VH + G G + Q+A G++VI G EKA
Sbjct: 4808789 ATAETLMTVWHNVFERGRLAPGETLLVHGGSSGIGTMAIQLAVALGSKVITTVGSQEKAD 4808968
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
+G A I+Y + A KGV+ + D VG
Sbjct: 4808969 ACLKLG-ATRAINYKTDDFVAAVEEATGGKGVEVILDMVG 4809085
Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 52/167 (31%), Positives = 80/167 (47%), Gaps = 2/167 (1%)
Frame = -2
Query: 1 GEEGAGTVVKVG-PGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQA 59
G EGAGTVVK G ++ +LGK VA GG YA F +++A+ L +P G T A+
Sbjct: 3136816 GNEGAGTVVKAGSSAAAQALLGKTVAMIGG----AMYAQFRLIRAADCLPLPAGTTAAEG 3136649
Query: 60 AAVLCQGLTAHYLVDSSYPCGPGSTVVVH-AAAGGTGLLVCQMAKLRGARVIGICGGAEK 118
A+ LTA +V++ G +VH AAA G ++ ++ G ++ I +
Sbjct: 3136648 ASCFVNPLTALGMVETMRR--EGHKALVHTAAASNLGQMLNRICLKDGIDLVNIVRSEAQ 3136475
Query: 119 AMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATFA 165
A L +G A+ V+D + L +A G +D +G A
Sbjct: 3136474 AKLLRDIG-ANYVVDSTSPDFMADLTKALEATGATIAFDAIGGGRLA 3136337
Score = 56.2 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 53/161 (32%), Positives = 81/161 (50%), Gaps = 1/161 (0%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVT-DAQA 59
G E AG + +G GV++ +G RV G G+ + A++++++PD + D A
Sbjct: 795862 GAEVAGVIESIGDGVTDLKVGDRVV--ASCGHNGAREKIAL-PAASIVKIPDNLDYDRAA 795692
Query: 60 AAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKA 119
++ G H L D + P PG T+ V AAGGTGL C++ KL G +VI EK
Sbjct: 795691 GIIIIYGTALHALEDRASP-KPGETLAVLGAAGGTGLAACELGKLMGLKVIACASSDEKL 795515
Query: 120 MLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
A G A++ ++Y L + KGVD ++D VG
Sbjct: 795514 AFARQHG-AELTLNYAKEDLKEGLKKLTGGKGVDIIFDPVG 795395
Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 43/140 (30%), Positives = 64/140 (45%), Gaps = 6/140 (4%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G + AG V +G VS G V Y G + G+ A F +V + P ++ AQAA
Sbjct: 3511037 GYDAAGVVEAIGSDVSLFKPGDEVFYAGSIQRPGTNAEFHLVDERIVGRKPTTLSFAQAA 3511216
Query: 61 AVLCQGLTAHYLVDSSYPCGPGS-----TVVVHAAAGGTGLLVCQMA-KLRGARVIGICG 114
A+ +TA L+ PG T+++ AGG G ++ Q+A KL VI
Sbjct: 3511217 ALPLTSITAWELLFDRLGVRPGKAYDPRTLLITGGAGGVGSILIQLARKLTSLTVIATAS 3511396
Query: 115 GAEKAMLATSVGRADVVIDY 134
E ++G A+ VID+
Sbjct: 3511397 RPETETWCRALG-ANAVIDH 3511453
Score = 42.4 bits (98), Expect = 0.048, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 36/65 (55%)
Frame = +3
Query: 100 QMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGV 159
Q+AK++GAR +GI GG K + D +D+ PD ++AA PKG+D ++ V
Sbjct: 2530365 QIAKIKGARAVGIAGGKAKCDYVKNELGFDDCLDH-RDPDLAAKLKAACPKGIDVYFENV 2530541
Query: 160 GQATF 164
G F
Sbjct: 2530542 GGEVF 2530556
>gb|CP000394.1| Granulibacter bethesdensis CGDNIH1, complete genome
Length = 2708355
Score = 108 bits (270), Expect = 6e-22, Method: Composition-based stats.
Identities = 72/169 (42%), Positives = 102/169 (60%), Gaps = 5/169 (2%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G EGAGTV+++G GV++ +G RVAY G G+YA + A L+++PD ++ AA
Sbjct: 17991 GMEGAGTVIEIGAGVTDIQVGDRVAY--ATGPLGAYATERTIAADRLVKLPDSISCQTAA 18164
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A++ QGLTA YL+ +YP G T++V+AAAGG GL++CQ A GA VIG+ EKA
Sbjct: 18165 AMMLQGLTAQYLLRRTYPVKRGDTILVYAAAGGVGLILCQWAAYLGASVIGVVSTEEKAA 18344
Query: 121 LATSVGRADVVIDYVATPDWPPLV-----RAAAPKGVDAVYDGVGQATF 164
LA + G + V+ V++ D P + R V VYD VG+ TF
Sbjct: 18345 LARAHGASHVI---VSSNDHPADIAGEVRRITQGAMVPVVYDSVGKDTF 18482
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 55/181 (30%), Positives = 78/181 (43%), Gaps = 19/181 (10%)
Frame = -2
Query: 3 EGAGTVVKVGPGVSETMLGKRVA--YFG----------------GVGCTGSYAAFTVVQA 44
+GAG VV+ G V+ G RVA +F G G + V +
Sbjct: 107642 DGAGEVVETGEDVTRFQPGDRVAPCFFQSWHDGPITERDGASALGGAIHGVLTEYAVFEQ 107463
Query: 45 SALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKL 104
L+ +PD ++ +AA + C +TA + + P PG TV+ GG + Q AK
Sbjct: 107462 DGLVRIPDHLSWEEAACLPCAAVTAWHALFGGTPVQPGQTVLTQ-GTGGVSIFAIQFAKA 107286
Query: 105 RGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRA-AAPKGVDAVYDGVGQAT 163
GARVI +K A ++G AD I+Y + PDW A GVD V + G T
Sbjct: 107285 AGARVITTSSSDKKLSRAQALG-ADEGINYRSRPDWHKAATALTGGLGVDHVVEVGGSGT 107109
Query: 164 F 164
Sbjct: 107108 L 107106
Score = 48.5 bits (114), Expect = 6e-04, Method: Composition-based stats.
Identities = 51/165 (30%), Positives = 71/165 (43%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V +G GV+ G++V + G YA + V A+ L P+G D +AA
Sbjct: 1504033 GLEVAGEVATLGAGVTTLQQGEKVT---ALTNGGGYAEYCAVPATQCLPYPEGFDDIRAA 1503863
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A+ T V G ++VH +GG G Q+A GA V GGAEK
Sbjct: 1503862 ALPETFFTVWANVFMLGRLQKGEKLLVHGGSGGIGSSAIQLASTMGATVYATAGGAEKCA 1503683
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATFA 165
+ G + IDY + KGVD + D +G + A
Sbjct: 1503682 ACRAWGAVE-SIDYKTKNFADAVAELTGKKGVDVILDMIGGSYLA 1503551
Score = 38.5 bits (88), Expect = 0.74, Method: Composition-based stats.
Identities = 35/110 (31%), Positives = 50/110 (45%)
Frame = -3
Query: 14 GVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLV 73
GV G RV + GS A V L +PD V D AAA+ G+++ +
Sbjct: 1192057 GVGRLDDGTRVFFVMPRAPQGSMAEQVTVPNGQWLALPDDVDDLTAAAIGNAGVSSWGAL 1191878
Query: 74 DSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLAT 123
G TV+V+ A G +G L +A+ GAR + I G +A+L T
Sbjct: 1191877 TERAKLQTGETVLVNGATGASGRLAVAIARHLGARRV-IATGRNQAVLDT 1191731
>emb|CU367582.1| Aphanomyces euteiches cDNA
Length = 754
Score = 108 bits (269), Expect = 7e-22, Method: Composition-based stats.
Identities = 75/164 (45%), Positives = 95/164 (57%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G+EGAG VV VG GV+E G RVAY V G+YA VV L+ +P+ + AA
Sbjct: 57 GKEGAGEVVAVGDGVTEFARGDRVAY---VETLGAYAEQCVVSEHFLVHLPEAIDFETAA 227
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A + +GLTA YL+ ++ PG TV++HAAAGG GL++ Q AK GA VIG G EKA
Sbjct: 228 ASMLKGLTAQYLLRRTFRVEPGHTVLIHAAAGGVGLILSQWAKHLGATVIGTVGTPEKAE 407
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
A G D VI+Y + +G D VYDGVG+ATF
Sbjct: 408 AAAQYG-CDYVINYGEENFAERVREITQGEGCDVVYDGVGKATF 536
>gb|CP000769.1| Anaeromyxobacter sp. Fw109-5, complete genome
Length = 5277990
Score = 108 bits (269), Expect = 8e-22, Method: Composition-based stats.
Identities = 83/165 (50%), Positives = 98/165 (59%), Gaps = 1/165 (0%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G EGAG V +VGPGVS G RVAY G +G SYA +V A L+++PDGV + AA
Sbjct: 3464936 GVEGAGVVEEVGPGVSHVGPGDRVAYTGPIG---SYADVRLVSAERLVKLPDGVDERTAA 3464766
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
AVL +GLT LV +Y G TV+VHAAAGG GL+ Q K GA VIG G KA
Sbjct: 3464765 AVLTKGLTVQALVRRTYRVRAGETVLVHAAAGGVGLIATQWLKALGATVIGTVGSDAKAS 3464586
Query: 121 LATSVGRADVVIDYVATPDWPPLVRA-AAPKGVDAVYDGVGQATF 164
LA + G D VI Y + D+P VR GV VYD VG+ATF
Sbjct: 3464585 LARAHG-CDHVIVY-SREDFPRRVRELTGGAGVPVVYDSVGKATF 3464457
Score = 65.9 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 53/154 (34%), Positives = 77/154 (50%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G +GAG VV VG V +G RV + G YA + V + ++P G++ +A
Sbjct: 551725 GNDGAGEVVAVGDRVRGFRIGDRVYAYSFDA--GFYAEYVAVNEDEVAQIPRGLSAEEAG 551552
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+ G+TA +D GPG T++V+ A+GG G L Q+AK GARV+ + G +
Sbjct: 551551 VLGADGVTAVRGLDDQLHLGPGQTLLVYGASGGIGHLAVQLAKRMGARVLAVASGRDGVE 551372
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDA 154
L +G AD +D D R AP G+DA
Sbjct: 551371 LVRRLG-ADAAVDG-KRDDVARAARDFAPAGLDA 551276
Score = 62.0 bits (149), Expect = 5e-08, Method: Composition-based stats.
Identities = 57/188 (30%), Positives = 84/188 (44%), Gaps = 24/188 (12%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGC------------------------TGSY 36
G + AG V +G GV +G V +GC +G
Sbjct: 3218037 GSDVAGAVEAIGAGVEGVKVGDAVVVNPSLGCGRCERCLSGDENLCRRYAILGEHVSGGM 3217858
Query: 37 AAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGL 96
A V A +L P ++ +AAAV +TA + + + G TV+VHAA G G+
Sbjct: 3217857 AERLAVPARNVLPKPANLSFVEAAAVPLTFMTAWHALVARARLRLGETVLVHAAGSGVGV 3217678
Query: 97 LVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVY 156
Q+AKL GARVI G EK A ++G AD V++Y + R +GV+ V+
Sbjct: 3217677 AAVQIAKLLGARVIATAGSDEKLRRAKALG-ADEVVNYETQDFVQEVRRLTDKRGVEVVF 3217501
Query: 157 DGVGQATF 164
+ VG+ T+
Sbjct: 3217500 EHVGKKTW 3217477
Score = 62.0 bits (149), Expect = 6e-08, Method: Composition-based stats.
Identities = 49/136 (36%), Positives = 61/136 (44%)
Frame = +1
Query: 3 EGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAAAV 62
E +G V V P V E +G V G A + V+A+ L P + AAA
Sbjct: 1192285 EVSGVVAAVAPEVREVEVGGAVYGLTDFFRDGGAAEYLAVRAAELAPKPRSLDHGSAAAT 1192464
Query: 63 LCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLA 122
LTA + PG V++H AAGG G Q+A+ RGA VIG A
Sbjct: 1192465 PLSALTAWQALFDHARLAPGQRVLIHGAAGGVGSFAAQLARWRGAHVIGT-ASARNVDFV 1192641
Query: 123 TSVGRADVVIDYVATP 138
+G AD VIDY ATP
Sbjct: 1192642 RKLG-ADEVIDYGATP 1192686
Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 38/107 (35%), Positives = 54/107 (50%)
Frame = -2
Query: 25 AYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGST 84
A GV G YA + VV+ A +PDG+ A+AA +LC G+T + + +S PG T
Sbjct: 4352102 AQITGVTLDGGYAEYAVVRYEAAARIPDGLEAAEAAPLLCAGITTYNSLRNS-GARPGDT 4351926
Query: 85 VVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVV 131
V V GG G L Q + G R + + G +K LA +G + V
Sbjct: 4351925 VAVQ-GVGGLGHLAIQYSARMGFRTVALSRGVDKRALALELGAHEYV 4351788
Score = 48.5 bits (114), Expect = 7e-04, Method: Composition-based stats.
Identities = 49/161 (30%), Positives = 70/161 (43%), Gaps = 1/161 (0%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V VG GV+ G RV + + A V L+ +PD ++ AA
Sbjct: 392536 GLELAGEVAAVGAGVTAWKAGDRVM---AIASGEAQAELAVAHERMLVRIPDALSSEDAA 392366
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A+ +T+H + + PG V+VHA G Q+AK GA VIG A+K
Sbjct: 392365 AIPEACVTSHDALFTLGGLRPGWPVLVHAIGSGVSTAALQIAKAAGATVIGTSRTADKLE 392186
Query: 121 LATSVGRADVVIDYVATPDWPPLVRA-AAPKGVDAVYDGVG 160
A ++G ++ P + VR +G V D VG
Sbjct: 392185 RARALGLDHGILVAKDEPRFAEEVRRLTGKRGCPLVLDFVG 392063
Score = 42.4 bits (98), Expect = 0.046, Method: Composition-based stats.
Identities = 42/153 (27%), Positives = 66/153 (43%), Gaps = 19/153 (12%)
Frame = +2
Query: 18 TMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSY 77
T + +R FGG Y++ VV +L+VP G+ A AA +LC G+T + +
Sbjct: 3451640 TEMDRRTPTFGG------YSSRIVVDERFVLKVPAGLDPAGAAPLLCAGITTWSPL-REW 3451798
Query: 78 PCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEK------------------A 119
C PG V V GG G + ++A GA V + A K +
Sbjct: 3451799 SCKPGDRVAV-VGLGGLGHMAVKLAASMGAEVTMLSTSASKEADARRLGAHAFASTKEAS 3451975
Query: 120 MLATSVGRADVVIDYVATP-DWPPLVRAAAPKG 151
+ GR D+++D ++ P D+ + PKG
Sbjct: 3451976 TFSRLAGRFDLIVDTISAPHDYDAHLGLLRPKG 3452074
Score = 38.9 bits (89), Expect = 0.62, Method: Composition-based stats.
Identities = 46/151 (30%), Positives = 63/151 (41%), Gaps = 25/151 (16%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGC-------------------------TGS 35
G E G V VG GV +G+RV + GC G
Sbjct: 3579176 GHEIVGRVEAVGEGVPRERVGERVILYYYAGCGRCPHCLRGDENLCDALRAEHGFVTDGG 3578997
Query: 36 YAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTG 95
+A + V A + +PD + DA+AA + C G+T + G G VVV
Sbjct: 3578996 FAEYVRVPARNAVPLPDAIGDAEAAPIGC-GVTTAVHAANLAGVGLGDWVVVFGVGAVGY 3578820
Query: 96 LLVCQMAKLRGARVIGICGGAEKAMLATSVG 126
LV Q+A+LRGARVI + EK A ++G
Sbjct: 3578819 GLV-QVARLRGARVIAVGRTPEKLERARALG 3578730
>emb|AM260479.1| Ralstonia eutropha H16 chromosome 1
Length = 4052032
Score = 108 bits (269), Expect = 8e-22, Method: Composition-based stats.
Identities = 73/164 (44%), Positives = 92/164 (56%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G EGAG V VG GV +G RVAY G TG+YA V+ A ++ +PD + AA
Sbjct: 1028537 GMEGAGVVEAVGEGVRHVAVGDRVAYAGRP--TGAYAQVRVMPADIVVRLPDAIPFDTAA 1028710
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A++ QGLTA YL+ SY PG TV++HAAAGG GL+ Q K G VIG G EKA
Sbjct: 1028711 AMMLQGLTAQYLIRDSYKVQPGDTVLLHAAAGGVGLIASQWLKALGVTVIGTVGSDEKAE 1028890
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
LA + G A ++ Y + KGV AVYD +G+ TF
Sbjct: 1028891 LARANGCAHTIV-YTRESFVERVREITNGKGVPAVYDSIGKDTF 1029019
Score = 72.8 bits (177), Expect = 4e-11, Method: Composition-based stats.
Identities = 52/160 (32%), Positives = 85/160 (53%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G + G V K+G GVS G+ +A + +G+YA F + L+ VP GV A+A
Sbjct: 655281 GWDLVGMVDKLGSGVSGVEPGQIIA---ALPISGAYAEFVCLAQRELVPVPPGVDVAEAV 655451
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+++ +TA+ ++ PG V++H AAGG G + Q+ +L G ++ G C ++ AM
Sbjct: 655452 SLVLNYVTAYQMLHRCAKVEPGQQVLIHGAAGGVGSALLQLGRLAGLQMYGTC-SSQDAM 655628
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
+ +G + IDY D+ +R GVD V+DG+G
Sbjct: 655629 AVSGLG--GIPIDY-QRLDFVEEIRRLTGDGVDVVFDGIG 655739
Score = 59.7 bits (143), Expect = 3e-07, Method: Composition-based stats.
Identities = 58/165 (35%), Positives = 78/165 (47%), Gaps = 1/165 (0%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG + +VG GVS G RV G G A + V AL+ VPDG++ AA
Sbjct: 1371104 GVEFAGEIAEVGEGVSGWRKGDRVMGHG----RGCQAEYVVADPLALIPVPDGMSWIDAA 1371271
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGAR-VIGICGGAEKA 119
A +TAH + ++ G +V+V+ A+GG + Q+A L GAR VI A K
Sbjct: 1371272 AFPNVFITAHDALVTNGRLVAGESVLVNGASGGVAMATIQIASLMGARPVIASSRSAAKL 1371451
Query: 120 MLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
G DV ID +++A KGVD + D VG F
Sbjct: 1371452 DKIIQFG-VDVGIDASQDDQVEAVLQATDNKGVDIIIDTVGGPVF 1371583
Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 54/164 (32%), Positives = 71/164 (43%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG +++V P V+ G+RVA G +A V A + VPDG+ AQAA
Sbjct: 2261336 GTEAAGEIIEVAPDVTRLRPGQRVA---AALDWGGFAEEAVAMADTVYPVPDGLELAQAA 2261166
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A+ T + PG T++VH A+G G Q+ +L GARVI K
Sbjct: 2261165 ALPITYGTVWAALAWRAALQPGETMLVHGASGALGTAAVQVGRLMGARVIATASTEAKRE 2260986
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
A G A + AT A G D V+D VG F
Sbjct: 2260985 AALRNGAAHALPSDAATLAAAVKALCPA-GGADVVFDPVGGDLF 2260857
Score = 56.2 bits (134), Expect = 4e-06, Method: Composition-based stats.
Identities = 36/98 (36%), Positives = 51/98 (52%), Gaps = 3/98 (3%)
Frame = +3
Query: 66 GLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSV 125
G+TA Y ++ PG T+ V AA+G G +V Q+AKL G R +G GG +K +
Sbjct: 1667529 GVTAWYGLNKIILPKPGKTIAVSAASGAVGSVVGQLAKLAGCRAVGFAGGKDKCDYVVNE 1667708
Query: 126 GRADVVIDYVATPDWPPL---VRAAAPKGVDAVYDGVG 160
D IDY A D L ++ A P G+D ++ VG
Sbjct: 1667709 LGFDACIDYKAAKDPKELYKMLKEATPDGIDGYFENVG 1667822
Score = 48.9 bits (115), Expect = 6e-04, Method: Composition-based stats.
Identities = 57/162 (35%), Positives = 81/162 (50%), Gaps = 2/162 (1%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRV-AYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQA 59
G E AG V VG GV+ G +V AY G G++A+ A++++ +P G+ A
Sbjct: 2581675 GSELAGVVNAVGEGVTHVKPGDKVIAYLG----NGAFASQAKAPAASVVPMPPGIDFETA 2581842
Query: 60 AAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKA 119
AA T+H+ V G T++V AAGG GL ++ K GARVI EK
Sbjct: 2581843 AAFTLTYGTSHHAVIDRGELKAGQTMLVLGAAGGVGLAAIEIGKAIGARVIAAASTDEKL 2582022
Query: 120 MLATSVGRADVVIDYVATPDWPPLVRAAAP-KGVDAVYDGVG 160
+ G AD +I+Y +T D ++A KG D +YD VG
Sbjct: 2582023 AVCKEHG-ADALINY-STEDLRERIKALTDGKGPDVIYDPVG 2582142
Score = 36.2 bits (82), Expect = 3.6, Method: Composition-based stats.
Identities = 40/138 (28%), Positives = 56/138 (40%), Gaps = 6/138 (4%)
Frame = +2
Query: 34 GSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDS-----SYPCGPGSTVVVH 88
G YA + +L P G++D +AAA+ T V P G T+++
Sbjct: 1144988 GGYAQLCTAPLAQVLPAPQGLSDIEAAALPETFFTVWSNVFDRGCLGQGPRGKDETLLIQ 1145167
Query: 89 AAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRA-A 147
+ G G Q+AK G +V G EK +G AD I+Y T D+ V A
Sbjct: 1145168 GGSSGIGTTAIQIAKALGYKVFVTAGTDEKCKACEDLG-ADRAINY-KTQDFVAEVSALT 1145341
Query: 148 APKGVDAVYDGVGQATFA 165
GVD + D V A
Sbjct: 1145342 GGNGVDVILDMVAGPYLA 1145395
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
Length = 5331656
Score = 107 bits (268), Expect = 9e-22, Method: Composition-based stats.
Identities = 68/168 (40%), Positives = 97/168 (57%), Gaps = 4/168 (2%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V+ VGP V+ G RVAY+ +G YA ++A+ L+++PD +T Q A
Sbjct: 3235611 GNEAAGEVIAVGPHVTNFHPGDRVAYYSNLG---GYATERNIEAAKLVKLPDHITYEQGA 3235441
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
++ +GLT YL+ ++ PG V++HAAAGG GLL CQ A+ GA VIG G KA
Sbjct: 3235440 VLMLKGLTVWYLLHKTFKVEPGHRVLIHAAAGGIGLLACQWARALGAHVIGTVGSKAKAD 3235261
Query: 121 LATSVGRADVVI----DYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
LA + G V++ D+VA + + + + D VYDGVG+ TF
Sbjct: 3235260 LALANGCDHVILYNEEDFVAR-----VKQISRNELCDVVYDGVGKTTF 3235132
Score = 62.4 bits (150), Expect = 5e-08, Method: Composition-based stats.
Identities = 44/96 (45%), Positives = 57/96 (59%), Gaps = 1/96 (1%)
Frame = -1
Query: 66 GLTAHY-LVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATS 124
GLTA++ L+D P G TVVV AAAG G +V Q+AKL+G RV+GI GG +K +
Sbjct: 634037 GLTAYFGLLDIGQP-RAGETVVVSAAAGSVGSIVGQIAKLKGCRVVGIAGGKQKCDWLVN 633861
Query: 125 VGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
D +DY + L RAAAP G+D +D VG
Sbjct: 633860 ELGFDAAVDYKDGALFKAL-RAAAPNGIDVYFDNVG 633756
Score = 58.9 bits (141), Expect = 5e-07, Method: Composition-based stats.
Identities = 55/161 (34%), Positives = 81/161 (50%), Gaps = 1/161 (0%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVT-DAQA 59
G E AG + +G GV++ +G RV G G+ + ASA++++PD + D A
Sbjct: 102210 GAEVAGVIESIGEGVTDLKVGDRVV--ASCGHNGAREKIAL-PASAIIKIPDNLDYDRAA 102380
Query: 60 AAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKA 119
++ G H L D + P PG T+ V AAGGTGL C++ KL G +VI EK
Sbjct: 102381 GIIIIYGTALHALDDRASP-KPGETLAVLGAAGGTGLAACELGKLMGLKVIACASSDEKL 102557
Query: 120 MLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
A G A++ ++Y L + KGVD ++D VG
Sbjct: 102558 EFAKQHG-AELTLNYAKEDLKEGLKKLTGGKGVDIIFDPVG 102677
Score = 58.2 bits (139), Expect = 8e-07, Method: Composition-based stats.
Identities = 48/160 (30%), Positives = 72/160 (45%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG VV +G G + LG +V + G YA + + Q + + VP G + +A
Sbjct: 5081445 GLEIAGEVVAIGDGATRHKLGDKVM---SLVAGGGYAEYCIAQDAQAMTVPAGFSMIEAG 5081615
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A +T + V PG T++VH + G G + Q+A GA+VI G +KA
Sbjct: 5081616 ATPETLMTVWHNVFERGALQPGETLLVHGGSSGIGTMAIQLAVAFGAKVIATVGAPDKAE 5081795
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
+G A I+Y + + KG D + D VG
Sbjct: 5081796 ACLKLG-ATRAINYKTEDFVAAVKETTSGKGADVILDMVG 5081912
Score = 58.2 bits (139), Expect = 9e-07, Method: Composition-based stats.
Identities = 54/189 (28%), Positives = 77/189 (40%), Gaps = 25/189 (13%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGC----------------TGSYAAFTV--- 41
G E +GT+ VG GV+ G++V +G + C G F V
Sbjct: 3838957 GAEASGTIEAVGDGVTRFAPGQKVVMYGALTCGHCKACLEGRDNFCENVGGLIGFHVDGF 3839136
Query: 42 ------VQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTG 95
+ A ++ VPD V+ AA T +++ + PG T++VHA G G
Sbjct: 3839137 ARELMNIPARLVIPVPDSVSLRDAACAPIAFSTVQHMLFDNAKLQPGETILVHAGGSGIG 3839316
Query: 96 LLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAV 155
+ MAK G VI G K +G AD VI+Y + KGVD V
Sbjct: 3839317 TVAIMMAKAIGCTVITTVGDDSKIEGVKKLG-ADYVINYRNHRFEHETRKITKKKGVDVV 3839493
Query: 156 YDGVGQATF 164
++ VG TF
Sbjct: 3839494 FEHVGADTF 3839520
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 45/141 (31%), Positives = 66/141 (46%), Gaps = 9/141 (6%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAY---------FGGVGCTGSYAAFTVVQASALLEVP 51
G + AG +V VG GV G RV G G A +A L+ +P
Sbjct: 1320646 GLDVAGEIVVVGDGVEGWKAGDRVLVDPLNRVEGGLMGETMNGGLAELCKARAHQLVRIP 1320825
Query: 52 DGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIG 111
D V+ QAAA+ TAH ++ ++ G V++ A+GG G+ Q+AK+ GA VI
Sbjct: 1320826 DNVSFEQAAALPVAYGTAHRMMTTNGQVKAGEKVLILGASGGVGVCCVQLAKIAGAYVIA 1321005
Query: 112 ICGGAEKAMLATSVGRADVVI 132
G AEK +G +V++
Sbjct: 1321006 CAGSAEKGERLKQLGADEVIL 1321068
Score = 55.5 bits (132), Expect = 5e-06, Method: Composition-based stats.
Identities = 52/167 (31%), Positives = 81/167 (48%), Gaps = 2/167 (1%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVS-ETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQA 59
G EGAGTV+K G S + +LGK VA GG YA + V++A+ L++ +G T A+
Sbjct: 3165117 GNEGAGTVIKAGRSDSAQALLGKTVAMIGG----AMYAQYRVIKAADCLQLAEGTTAAEG 3164950
Query: 60 AAVLCQGLTAHYLVDSSYPCGPGSTVVVH-AAAGGTGLLVCQMAKLRGARVIGICGGAEK 118
A+ LTA +V++ G +VH AAA G ++ ++ G ++ I +
Sbjct: 3164949 ASCFVNPLTALGMVETMKR--EGHKALVHTAAASNLGQMLNRICLQDGIDLVNIVRSEAQ 3164776
Query: 119 AMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATFA 165
A L +G A V+D ++ L A A G +D +G A
Sbjct: 3164775 AKLLRDIG-AKYVVDSSSSTFMAELTDALAETGATVAFDAIGGGRLA 3164638
Score = 55.5 bits (132), Expect = 6e-06, Method: Composition-based stats.
Identities = 61/165 (36%), Positives = 78/165 (47%), Gaps = 1/165 (0%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V++ G GVS+ +G +V G +YA V AS L +P A+AA
Sbjct: 3669386 GVEAAGDVIETGEGVSDVRVGDKVIVKLRFG---AYAQEVAVAASQLTPMPPNFDYAEAA 3669216
Query: 61 AVLC-QGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKA 119
L G H LVD G ++VH AAGG GL ++ K GA VI EK
Sbjct: 3669215 TYLAGHGTAWHGLVDRG-QLKKGEVLLVHGAAGGVGLAAVELGKYLGATVIAAASSEEKL 3669039
Query: 120 MLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
+A + G AD I Y A P + R +G D V+D VG A F
Sbjct: 3669038 AVARARG-ADHGILYGAEPFRDAVKRITGGRGADVVFDPVGGAIF 3668907
Score = 49.3 bits (116), Expect = 4e-04, Method: Composition-based stats.
Identities = 52/177 (29%), Positives = 81/177 (45%), Gaps = 17/177 (9%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRV-------AYFGGVGCT--GSYAAFTVVQASALLEVP 51
G + AG V +G GV +G RV G +G T G A + V +A L+ +P
Sbjct: 3516163 GIDIAGEVAALGAGVEGWNVGDRVLIDPINRVEGGLMGETRDGGLAEYCVTRAHQLIALP 3515984
Query: 52 DGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIG 111
D ++ QA+ + TA ++ + G V++ A+GG G+ Q+AK GA VI
Sbjct: 3515983 DDISFEQASCLPVAYGTALRMMTTIGHVSAGEKVLILGASGGVGICCVQLAKAAGAYVIA 3515804
Query: 112 ICGGAEKAMLATSVGRADVV----IDYV----ATPDWPPLVRAAAPKGVDAVYDGVG 160
G AEK +G +V+ +D++ A P +A+ GVD V + G
Sbjct: 3515803 CAGSAEKGERLMEIGADEVILYNEVDFMQECRARHGKPRAGKASKGAGVDMVVNFTG 3515633
Score = 48.1 bits (113), Expect = 9e-04, Method: Composition-based stats.
Identities = 46/160 (28%), Positives = 71/160 (44%), Gaps = 1/160 (0%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG + VG +G+RV G T ++ T+ L +PDG+ +AA
Sbjct: 3933046 GMEWAGEIEAVGDEAYGCEVGQRVMGSG----TAAFGESTLADHGRLFPIPDGIGFEEAA 3933213
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGAR-VIGICGGAEKA 119
+ T H + + G V++ A+ G GL+ Q+AKL+GAR VIG +
Sbjct: 3933214 TLPVALTTMHNALIAVGKLRAGQAVLIQGASSGVGLMAMQIAKLKGARLVIGSSTDKHRR 3933393
Query: 120 MLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGV 159
+ G AD+ ID ++ A GVD + D +
Sbjct: 3933394 DRLSEFG-ADLAIDSSDAGWVDQVLEATGGAGVDLIIDQI 3933510
Score = 44.3 bits (103), Expect = 0.013, Method: Composition-based stats.
Identities = 41/140 (29%), Positives = 63/140 (45%), Gaps = 6/140 (4%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G + AG V VG V+ G V Y G +G G+ A +V + P ++ AQAA
Sbjct: 2671032 GYDAAGVVESVGSEVTLFRPGDEVFYAGSIGRQGTNAELHLVDERIVGRKPTTLSFAQAA 2670853
Query: 61 AVLCQGLTAHYLVDSSYPCGPGS-----TVVVHAAAGGTGLLVCQMA-KLRGARVIGICG 114
A+ +TA L+ PG T+++ AGG G ++ Q+A +L V+
Sbjct: 2670852 ALPLTSITAWELLFDRLGVRPGKAHDPRTLLITGGAGGVGSILIQLARRLTALTVVATAS 2670673
Query: 115 GAEKAMLATSVGRADVVIDY 134
+ +G AD VID+
Sbjct: 2670672 RPQTQAWCRELG-ADAVIDH 2670616
Score = 40.4 bits (93), Expect = 0.21, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 35/65 (53%)
Frame = -3
Query: 100 QMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGV 159
Q+AK++GAR +GI GG K + D +D+ PD ++AA P G+D ++ V
Sbjct: 3650415 QIAKIKGARAVGIAGGKVKCDYVKTELGFDDCLDH-RDPDLAAKLKAACPNGIDVYFENV 3650239
Query: 160 GQATF 164
G F
Sbjct: 3650238 GGEVF 3650224
Score = 35.4 bits (80), Expect = 6.1, Method: Composition-based stats.
Identities = 34/125 (27%), Positives = 53/125 (42%), Gaps = 3/125 (2%)
Frame = +1
Query: 34 GSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCG---PGSTVVVHAA 90
G+YA V+ L+ +PDG++ A A+ G TA V + G VVV A
Sbjct: 1276087 GAYAEKARVKGDWLVRLPDGLSARDAMAIGTAGYTAMLSVLALEKHGLTPKDGPVVVTGA 1276266
Query: 91 AGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPK 150
AGG G + + G VI G + +G A+++ + PL +
Sbjct: 1276267 AGGVGSVAIALLSKLGYHVIASTGRTSEEAYLRDLGAAEIIDRNELSGPAKPLAKERWAG 1276446
Query: 151 GVDAV 155
G+D+V
Sbjct: 1276447 GIDSV 1276461
>gb|CP000873.1| Brucella canis ATCC 23365 chromosome II, complete sequence
Length = 1206800
Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats.
Identities = 70/164 (42%), Positives = 94/164 (57%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G EGAG VV VG GV +G+RVAY GSYA ++ A L++VPD + AA
Sbjct: 550331 GNEGAGIVVAVGAGVENVRVGERVAY---AATPGSYADERILPADRLVKVPDTIDLKTAA 550161
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+++ +G+TA YL+ ++ PG T++ HAAAGG GL+ Q AK GA VIG G EK
Sbjct: 550160 SMMLKGMTAQYLLRRTFRVEPGQTILFHAAAGGVGLIAGQWAKHLGATVIGTAGSEEKIA 549981
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
LA G D VI+Y + + +GVD VYD VG+ T+
Sbjct: 549980 LARKHGY-DHVINYRSENFVERVRELTNSEGVDVVYDSVGRDTY 549852
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 47/161 (29%), Positives = 76/161 (47%), Gaps = 1/161 (0%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E +G V+++ V+ G R+ + G+Y+ +VQA + VP G++ +AA
Sbjct: 371848 GLELSGVVLEIAEDVTRFGPGDRIM---ALVAGGAYSEEAIVQADVCIPVPAGLSMVEAA 372018
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+ T + PG TV++H G G+ +AK GAR+I CG +K
Sbjct: 372019 GIPETYFTVWSNLFQHAGLQPGETVLLHGGTSGIGVTATLLAKAIGARMITTCGSDDKCR 372198
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAP-KGVDAVYDGVG 160
+ ++G A I+Y T D+ RA +G + V D VG
Sbjct: 372199 ASEALG-AIASINY-RTTDFVEAGRALTEGRGPEVVIDMVG 372315
>gb|CP000764.1| Bacillus cereus subsp. cytotoxis NVH 391-98, complete genome
Length = 4087024
Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats.
Identities = 64/164 (39%), Positives = 90/164 (54%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G +G GTV +GP V +G RV GG +G+YA+ ++ + ++ +PD ++ AA
Sbjct: 2039129 GSQGVGTVEAIGPNVETIQVGDRVVCAGG---SGTYASHVLISSQRVIPIPDEISFEHAA 2039299
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A L QG A + +YP ++HAAAGG GL +CQMAK+RG VIG+ EKA
Sbjct: 2039300 AGLIQGFLAWAFTNYAYPIKKEDWCLIHAAAGGIGLFLCQMAKIRGGHVIGVTSKKEKAR 2039479
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
G AD VI + + R +GV+ VYDGVG+ TF
Sbjct: 2039480 YVLEAG-ADEVIISTQSDIVKEVKRITNGQGVNVVYDGVGKDTF 2039608
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 52/190 (27%), Positives = 81/190 (42%), Gaps = 26/190 (13%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYF-------------------------GGVGCTGS 35
G EG G V K+ V+ +G RV+ G G
Sbjct: 881861 GHEGIGIVTKIADDVTSLQVGDRVSIAWMFQSCGRCEYCVTGRETFCREVKNAGYTVDGG 882040
Query: 36 YAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTG 95
A +V A ++VP+G+ AQA+++ C G+T + + S PG ++V++ GG G
Sbjct: 882041 MAEQCIVTADYAVKVPEGLDPAQASSITCAGVTTYKAIKVS-DIKPGQSIVIY-GCGGLG 882214
Query: 96 LLVCQMAK-LRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDA 154
L Q AK + GA+VI + +K LA VG AD+ I+ +++ A A
Sbjct: 882215 NLAVQYAKHVFGAKVIAVDINDDKLALAKKVG-ADMTINPTTQGLADKIIQEAFGGAYAA 882391
Query: 155 VYDGVGQATF 164
V V + F
Sbjct: 882392 VVTAVSKVAF 882421
>gb|EU686608.1| Uncultured bacterium KM3-205-D9 genomic sequence
Length = 37834
Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats.
Identities = 71/164 (43%), Positives = 92/164 (56%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G EGAG V VG GV+E +G RVAY +G SY ++ A L+++P +++ QAA
Sbjct: 1626 GNEGAGVVEAVGDGVTEVEVGDRVAYCMSLG---SYTQRRLIPAKQLVKIPKDISEQQAA 1456
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A + +G T YL+ +YP G TV+ HAAAGG GL+ CQ K G RVIG G AEKA
Sbjct: 1455 AAMLKGCTVQYLIRQTYPVQKGETVLFHAAAGGCGLIACQWLKHLGVRVIGTVGTAEKAE 1276
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
LA + G D I Y + +GV VYD VG+ TF
Sbjct: 1275 LARAHG-CDHPIVYTEDNFVDRVKELTDGRGVPVVYDSVGKDTF 1147
>gb|CP000943.1| Methylobacterium sp. 4-46, complete genome
Length = 7659055
Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats.
Identities = 75/164 (45%), Positives = 94/164 (57%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G EG G VV VG GV+ +G RVAY +YA V++A ++VPDG+ DA AA
Sbjct: 3573674 GNEGTGEVVAVGEGVAGLAVGDRVAYGSA---AQTYAQEAVIEARMAVKVPDGIDDATAA 3573504
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A++ +GLTA YL+ +Y PG T++ HAAAGG GL+ Q AK GA VIG G +KA
Sbjct: 3573503 AMMLKGLTAQYLLRKTYRVQPGDTILFHAAAGGVGLIATQWAKHLGATVIGTVGSRDKAE 3573324
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
LA G D VI Y + KG VYDGVGQAT+
Sbjct: 3573323 LAKQHG-CDHVILYRDEDFAARVKEITGGKGCAVVYDGVGQATY 3573195
Score = 83.6 bits (205), Expect = 2e-14, Method: Composition-based stats.
Identities = 72/166 (43%), Positives = 93/166 (56%), Gaps = 1/166 (0%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G EGAG V VGPGV+ G+RVAY G G+YAA ++ A + +P+ ++D AA
Sbjct: 6807854 GVEGAGVVEAVGPGVAGLAPGERVAY---AGVPGAYAATRLLPAWRAIPLPEAISDEAAA 6808024
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A L +GLTAH L+ + P GS ++VHAAAGG G LV + A GA VIG G EKA
Sbjct: 6808025 ASLLRGLTAHMLLTLTCPVTAGSVLLVHAAAGGLGALVTRWASRLGAVVIGTVGSEEKAQ 6808204
Query: 121 LATSVGRADVVIDYVATPDWPPLVR-AAAPKGVDAVYDGVGQATFA 165
A + G A V++ A D P V +GVD DG+G A
Sbjct: 6808205 AARASGAAAVIVGRDA--DLPARVADLTRGRGVDFAIDGIGGGMLA 6808336
Score = 68.9 bits (167), Expect = 6e-10, Method: Composition-based stats.
Identities = 59/161 (36%), Positives = 79/161 (49%), Gaps = 1/161 (0%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRV-AYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQA 59
G E AG V +GPGV +G+RV A+ G C + A + AL +PDGV D QA
Sbjct: 4765659 GAEAAGIVEAIGPGVEGLRVGERVIAHLGHGTCRETILA----RREALSPIPDGVGDEQA 4765826
Query: 60 AAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKA 119
A + T+ + + G T+VV A+GG GL ++ GARVI A+K
Sbjct: 4765827 AGLTVTYGTSLHALQDRAALRAGETLVVLGASGGVGLAAVELGHAMGARVIACASSADKL 4766006
Query: 120 MLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
A + G AD+V+DY L R G+D VYD VG
Sbjct: 4766007 EAARAHG-ADLVLDYSEENLREGLRRLGGAAGIDVVYDPVG 4766126
Score = 64.7 bits (156), Expect = 9e-09, Method: Composition-based stats.
Identities = 55/160 (34%), Positives = 76/160 (47%), Gaps = 4/160 (2%)
Frame = -1
Query: 9 VKVGPGVSETMLGKRVAYFGG--VGCTGSYAAFTVVQASALLEVPDGVTDAQAAAVLC-- 64
V VG V+E + + G V G + F V L ++ V A +
Sbjct: 4911274 VMVGGTVAEVVASHNPGFAAGDTVLAYGGWQDFAVSDGRGLRKLDPAVAPVTTALGILGM 4911095
Query: 65 QGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATS 124
G+TA+ + + PG TVVV AA G G LV Q+AKL+GAR +GI GG +K T
Sbjct: 4911094 PGMTAYTGLLTIGAPKPGETVVVAAATGPVGSLVGQIAKLKGARAVGIAGGPDKCRHLTE 4910915
Query: 125 VGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
D ID+ + D P + AA P G+D ++ VG A F
Sbjct: 4910914 ELGFDAAIDH-RSADLPGALAAACPNGIDVYFENVGGAVF 4910798
Score = 54.3 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 51/162 (31%), Positives = 70/162 (43%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG VV G GV+ G V + +G YA + V +A L P ++ +AA
Sbjct: 2240001 GLEVAGRVVARGEGVTGLSEGDEVC---ALVISGGYAEYCVAEAPLCLPRPRPLSLLEAA 2240171
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
++ T V PG +VH + G G Q+AK GA + G AEK
Sbjct: 2240172 SLPENIYTVWTNVFERGRLAPGERFLVHGGSSGIGYTAIQLAKHAGATIYATAGSAEKCA 2240351
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQA 162
++G AD I+Y + R KGVD + D VG A
Sbjct: 2240352 FCETMG-ADAAINYREADFAEEVKRLTGGKGVDLILDMVGAA 2240474
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 61/172 (35%), Positives = 83/172 (48%), Gaps = 8/172 (4%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRV-AYFGGVGC-TGSYAAFTVVQASALLEVPDGVTDAQ 58
G + AGTV VGPGVS +G V GGVG GS A + V A+ L P ++ +
Sbjct: 1387155 GLDMAGTVEAVGPGVSGMRVGDEVYGMTGGVGGHQGSLAEYQVADANLLAPKPANLSMRE 1386976
Query: 59 AAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEK 118
AA++ +TA + G G V+VH AGG G Q+A+ GA V G +
Sbjct: 1386975 AASLPLVAITAWEGLVDRARVGSGQLVLVHGGAGGVGQAAVQIARAFGAEVFATGSGVNR 1386796
Query: 119 AMLATSVG------RADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
+++ T +G R++ V DYV R A +G D VYD VG AT
Sbjct: 1386795 SVI-TRLGATFIDYRSETVADYVE--------RHTAGRGFDLVYDTVGGATL 1386667
Score = 52.0 bits (123), Expect = 6e-05, Method: Composition-based stats.
Identities = 42/126 (33%), Positives = 64/126 (50%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G++ AG V VG V + +G RV GS+A+ ++ +PDG++ +AA
Sbjct: 208683 GQDAAGVVSAVGEDVVDFAVGDRVLTI----LAGSFASHIATLPQVVMRIPDGMSFEEAA 208516
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+ LTAHY ++ G V++HA AGG G+ Q+A+ GA + G EKA
Sbjct: 208515 TIPVVFLTAHYALNRLGRMRAGERVLIHAGAGGVGMAAIQLARNAGAEIFVTVGSPEKAD 208336
Query: 121 LATSVG 126
L S+G
Sbjct: 208335 LMRSLG 208318
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 43/125 (34%), Positives = 61/125 (48%), Gaps = 1/125 (0%)
Frame = +3
Query: 41 VVQASALLEVPDGVTDAQAA-AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVC 99
V+ A ++ VP GV +AA A + G H L D++ PG +++VHA G G
Sbjct: 5338314 VMPARLVVPVPAGVGLVEAACAPIAFGTVQHMLFDNAR-LEPGESILVHAGGSGIGTAAI 5338490
Query: 100 QMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGV 159
+MAK G V G K A ++G AD VI+Y + R KGVD V++ V
Sbjct: 5338491 KMAKAIGCTVFTTVGDDAKGEKARALG-ADHVINYRRERFEGEVRRLTRRKGVDVVFEHV 5338667
Query: 160 GQATF 164
G T+
Sbjct: 5338668 GAETW 5338682
Score = 43.1 bits (100), Expect = 0.029, Method: Composition-based stats.
Identities = 47/131 (35%), Positives = 60/131 (45%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E +G V VGPGV+ G V F G +A VV + P G+ AA
Sbjct: 391527 GLECSGRVTAVGPGVTAVAPGDAVVAFAQSG----FATHVVVPEMVVAPAPKGIGLQAAA 391694
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
LTA+Y + + G V+VH AGG GL Q+A RGARVI G EK
Sbjct: 391695 TTPVAFLTAYYGLVTLARIKAGEWVLVHGGAGGVGLAALQIAASRGARVIATAGSTEKRA 391874
Query: 121 LATSVGRADVV 131
L ++G V+
Sbjct: 391875 LVKALGAEHVL 391907
Score = 38.9 bits (89), Expect = 0.60, Method: Composition-based stats.
Identities = 27/100 (27%), Positives = 44/100 (44%), Gaps = 2/100 (2%)
Frame = +2
Query: 34 GSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYP--CGPGSTVVVHAAA 91
GS+ F VQ+ L+ P +T ++A TA+ ++ P PG V++ A+
Sbjct: 40496 GSFGQFCRVQSRQLMRRPQHLTWEESACYTLTLATAYRMLFGHAPHTVRPGQNVLIWGAS 40675
Query: 92 GGTGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVV 131
GG G+ Q+ GA I + K S+G V+
Sbjct: 40676 GGLGVFGVQLCAASGANAIAVISDESKRDYVMSLGAKGVI 40795
Score = 36.6 bits (83), Expect = 3.0, Method: Composition-based stats.
Identities = 35/111 (31%), Positives = 48/111 (43%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G + +G V VGP V+ +G + TG YA + V A + P + +AA
Sbjct: 6175350 GSDISGIVEAVGPAVTGLHVGDPIFGVTNARFTGGYAEYAVASADMIARRPASLGVVEAA 6175171
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIG 111
AV +TA + G TV++H AG G Q AK GA VI
Sbjct: 6175170 AVPVVAVTAWQALFEQANVQHGDTVLIHGGAGAVGAYTVQFAKQAGALVIA 6175018
Score = 36.2 bits (82), Expect = 4.1, Method: Composition-based stats.
Identities = 39/135 (28%), Positives = 56/135 (41%), Gaps = 3/135 (2%)
Frame = +3
Query: 34 GSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHY--LVDSSYPCGP-GSTVVVHAA 90
G+YA V+ L+ +P T QA A+ G TA L + P VV A
Sbjct: 2633856 GAYAQKARVRGDWLVPLPASFTPQQAMAIGTAGYTAMLCLLALERHGLAPEKGPAVVTGA 2634035
Query: 91 AGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPK 150
AGG G + + G RVI G +E+ +G A+++ + PL +
Sbjct: 2634036 AGGVGSVAVALLAANGWRVIASTGRSEEEAYLRDLGAAEIIDRAELSKPAKPLAKERWAA 2634215
Query: 151 GVDAVYDGVGQATFA 165
G+D VG AT A
Sbjct: 2634216 GIDT----VGGATLA 2634248
Score = 35.8 bits (81), Expect = 4.5, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Frame = -1
Query: 34 GSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYP--CGPGSTVVVHAAA 91
GS+ F VQ+ L+ P +T ++A TA+ ++ P PG V++ A+
Sbjct: 6210469 GSFGQFCRVQSRQLMRRPQHLTWEESACYTLTLATAYRMLFGHAPHTVRPGQNVLIWGAS 6210290
Query: 92 GGTGLLVCQMAKLRGA 107
GG G+ Q+A L+ A
Sbjct: 6210289 GGLGVFGVQLAHLKQA 6210242
>gb|CP001341.1| Arthrobacter chlorophenolicus A6, complete genome
Length = 4395537
Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats.
Identities = 77/165 (46%), Positives = 97/165 (58%), Gaps = 1/165 (0%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AGTV VG GV+ G RVA G+ C YA + +V A L VP G+ D AA
Sbjct: 1669231 GSEAAGTVESVGAGVTAFAAGDRVATAEGINC---YAEYALVDEDAALPVPAGLDDFTAA 1669061
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A+ QG+TAHYL++S++ PG TV++HA AGG GLL+ Q+ K RGA+VI +K
Sbjct: 1669060 ALPLQGMTAHYLINSTFRVEPGHTVLLHAGAGGVGLLLIQLLKARGAQVITTVSTDDKEQ 1668881
Query: 121 LATSVGRADVVIDYVATPDWPPLVRA-AAPKGVDAVYDGVGQATF 164
LA G AD V+ Y + P VR GVD VYDGVG+ TF
Sbjct: 1668880 LAREAG-ADHVLRYEG---FAPRVREITGGTGVDVVYDGVGKDTF 1668758
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 56/163 (34%), Positives = 79/163 (48%), Gaps = 3/163 (1%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSE--TMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQ 58
G E +G + G GV++ ++ K VA G G YA V A +L +PDGV
Sbjct: 898524 GLEVSGRIAGFGTGVTKPFSLGDKVVALLAG----GGYAQQVAVPAEQVLRLPDGVDLVT 898691
Query: 59 AAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEK 118
AA++ T + + + G TV++H A GG G + Q+AK GA+V G EK
Sbjct: 898692 AASLPEVAATVYSNLVMTAQLQAGETVLIHGATGGIGTMAIQLAKAYGAKVATTAGTDEK 898871
Query: 119 AMLATSVGRADVVIDYVATPDWP-PLVRAAAPKGVDAVYDGVG 160
A + AD+ I+Y A D+P L R KG D + D VG
Sbjct: 898872 VSTAKAFLGADIAINY-AEEDFPESLRRQNGGKGADVILDVVG 898997
Score = 44.3 bits (103), Expect = 0.015, Method: Composition-based stats.
Identities = 55/167 (32%), Positives = 77/167 (46%), Gaps = 11/167 (6%)
Frame = +3
Query: 2 EEGAGTVVKVGPGVSETMLGKRVAYFGGVGCT--GSYAAFTVVQASALLEVPDGVTDAQA 59
++GAG V VGPGV+ G RV + + G+ + VV + ++ +PD +
Sbjct: 2364996 QDGAGIVDAVGPGVTGFSAGDRVWLWDVAWGSDEGTAQEYAVVPSVKVVALPDDESFDTG 2365175
Query: 60 AAVLCQGLTAHYLVDSSYPCGP---------GSTVVVHAAAGGTGLLVCQMAKLRGARVI 110
A++ LTAH + SS GP G TV+V AG Q+A+ GA VI
Sbjct: 2365176 ASLGIPALTAHRALTSS-EHGPDRLSPGSLTGQTVLVTGGAGAVSHAAIQLARWAGATVI 2365352
Query: 111 GICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYD 157
K LA G A V++Y T D V AA P+GVD + D
Sbjct: 2365353 TTVSDDRKDGLARLAG-AHRVLNY-RTEDVVAAVNAAVPEGVDTIVD 2365487
Score = 43.9 bits (102), Expect = 0.016, Method: Composition-based stats.
Identities = 38/131 (29%), Positives = 60/131 (45%), Gaps = 24/131 (18%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCT------------------------GSY 36
G EGAGTVV+VGPGV+ +G +VA + C+ G +
Sbjct: 1955815 GHEGAGTVVEVGPGVTGLKVGDQVALESHLTCSQCFPCRTGDAHTCERTGILGMHIDGVF 1955636
Query: 37 AAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGL 96
A + V +++P G++ A + G+ H + ++Y G V+V + AG GL
Sbjct: 1955635 AEYAAVPQDICVKLPSGLSLESGALLEAAGVAVHAIQRANYSVA-GRAVLV-SGAGPVGL 1955462
Query: 97 LVCQMAKLRGA 107
+V +A L GA
Sbjct: 1955461 VVVNLALLMGA 1955429
Score = 43.1 bits (100), Expect = 0.034, Method: Composition-based stats.
Identities = 46/131 (35%), Positives = 56/131 (42%), Gaps = 1/131 (0%)
Frame = +1
Query: 31 GCTGSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAA 90
G T S A + ASA L A+ GLTA+ + G V V A
Sbjct: 1330162 GSTASPARTDLAPASAFL-----------GALGMTGLTAYAGLLKVAEFKEGDAVFVSGA 1330308
Query: 91 AGGTGLLVCQMAKLRGA-RVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAP 149
AG G LV Q+AK GA RVIG G K +G D DY P L +AA
Sbjct: 1330309 AGAVGSLVGQIAKAMGATRVIGSAGSPAKVARLLELG-FDAAFDYHDGPVREQLEKAAGA 1330485
Query: 150 KGVDAVYDGVG 160
+G+D +D VG
Sbjct: 1330486 QGIDVYFDNVG 1330518
Score = 37.0 bits (84), Expect = 2.2, Method: Composition-based stats.
Identities = 41/156 (26%), Positives = 60/156 (38%), Gaps = 25/156 (16%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYF-------------------------GGVGCTGS 35
G EG G VV +G GV++ +G V GG GS
Sbjct: 3109401 GHEGVGEVVALGEGVTDLAVGDMVGNAWLWSACGDCQYCRTGWETLCEAQKNGGYSVDGS 3109222
Query: 36 YAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTG 95
+ + +V +P G + A VLC G+T + + + PG V + + GG G
Sbjct: 3109221 FGEYMLVNTRYAARIPAGSDPVEVAPVLCAGVTVYKGLKMT-EAQPGQWVTI-SGIGGLG 3109048
Query: 96 LLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVV 131
+ Q A G RV + +K LA + G A V
Sbjct: 3109047 HIAVQYAVAMGLRVAAVDIADDKLALAKAHGAALTV 3108940
Score = 35.4 bits (80), Expect = 6.0, Method: Composition-based stats.
Identities = 40/146 (27%), Positives = 56/146 (38%), Gaps = 37/146 (25%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCT--------------------------- 33
G E AG V +VG V++ +G RV GVGC
Sbjct: 3635090 GHEIAGIVTEVGSEVTKHKVGDRV----GVGCMVNSCRECVNCQKGEEQYCLKGNVGTYG 3634923
Query: 34 ----------GSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGS 83
G Y+ VV ++ +P+G+ AA +LC G+T Y + GPG
Sbjct: 3634922 AVDRDGTITQGGYSTHVVVTEDFVVTIPEGLDLDVAAPLLCAGITT-YSPLHHWGAGPGK 3634746
Query: 84 TVVVHAAAGGTGLLVCQMAKLRGARV 109
V V GG G + ++A GA V
Sbjct: 3634745 KVAV-VGLGGLGHMAVKIAHAMGAEV 3634671
>gb|CP000628.1| Agrobacterium radiobacter K84 chromosome 1, complete sequence
Length = 4005130
Score = 107 bits (266), Expect = 1e-21, Method: Composition-based stats.
Identities = 66/164 (40%), Positives = 93/164 (56%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G+E AGT+ +G GV++ +G RVAY VG G+Y+ ++ L++VPD + A
Sbjct: 1850804 GKEAAGTITAIGSGVTDFAVGDRVAY---VGSDGAYSVERNIETRHLVKVPDDIPLETAG 1850974
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
++ +G+T YL++ ++ GPG+ ++ HAAAGG GL+ Q AK GA VIG G EK
Sbjct: 1850975 VMMLKGMTVEYLLNRTFKVGPGTVLLFHAAAGGVGLIAGQWAKALGATVIGTAGSPEKVK 1851154
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
LA D VIDY + KGVD VYD VG+ TF
Sbjct: 1851155 LALE-HDYDHVIDYSRENFADRVKEITGGKGVDVVYDSVGRDTF 1851283
Score = 94.7 bits (234), Expect = 9e-18, Method: Composition-based stats.
Identities = 68/166 (40%), Positives = 90/166 (54%), Gaps = 1/166 (0%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G EGAG V +GP V +G RVAY G GSYA + AS L+++PDGV + A
Sbjct: 408427 GFEGAGIVDAIGPDVEGLKVGDRVAYVGHP--LGSYAEMRTLPASRLIKLPDGVNERLAG 408254
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+ + +GLTA L+ +P PG ++VHAAAGG G +V + AK GA VI G KA
Sbjct: 408253 SSMLRGLTAQMLLHKVHPVQPGEWILVHAAAGGVGQIVTRWAKRLGANVIATVGSEAKAE 408074
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAP-KGVDAVYDGVGQATFA 165
A G AD V+ + + DW R A +GV DG+G A +
Sbjct: 408073 FAYEAG-ADTVLLH-TSEDWVEETRRIADRRGVHFAIDGIGGAMLS 407942
Score = 62.0 bits (149), Expect = 7e-08, Method: Composition-based stats.
Identities = 51/164 (31%), Positives = 76/164 (46%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG VV V GV+E +G +V G+ G+YA + V+ AS L P+G +AA
Sbjct: 1088246 GLEVAGEVVDVARGVTEFAIGNKVC---GLANGGAYAEYCVLPASQALRFPNGYDAVRAA 1088416
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
++ T + G +V++H + G G Q+A GA V G EK
Sbjct: 1088417 SLPETFFTVWANLFQMAGLTEGESVLIHGGSSGIGTTAIQLAHAFGATVYATAGSKEKCE 1088596
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
+G A I+Y D+ +++A GVD + D +G A F
Sbjct: 1088597 ACEKLG-AKRAINY-KDEDFAEVIKAETGHGVDIILDMIGAAYF 1088722
Score = 59.7 bits (143), Expect = 3e-07, Method: Composition-based stats.
Identities = 61/192 (31%), Positives = 87/192 (45%), Gaps = 27/192 (14%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGC----------------TGSYAAFTV--- 41
G E +G V +GPGV+ + G+ V+ +G C G F +
Sbjct: 2201069 GAEASGVVEAIGPGVANVLPGQLVSIYGARTCGLCRHCREGRDNLCEHVGGVHGFHLDGF 2200890
Query: 42 ------VQASALLEVPDGVTDAQAA-AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGT 94
+ A L+ P GV AA A + G H L D++ PG T++VHA G
Sbjct: 2200889 AQEKVNLPARLLVPAPPGVDAIGAALAPVTFGTVEHMLFDNA-KLEPGETILVHAGGSGI 2200713
Query: 95 GLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRA-AAPKGVD 153
G Q+AK G VI G +K A ++G AD VI+Y T + +VR KGVD
Sbjct: 2200712 GTAAIQLAKKIGCTVITTVGSDDKIEKAKALG-ADHVINY-RTDRFEGVVRKLTKKKGVD 2200539
Query: 154 AVYDGVGQATFA 165
V++ VG+ T+A
Sbjct: 2200538 VVFEHVGKDTWA 2200503
Score = 44.3 bits (103), Expect = 0.012, Method: Composition-based stats.
Identities = 38/128 (29%), Positives = 58/128 (45%), Gaps = 1/128 (0%)
Frame = -3
Query: 34 GSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGG 93
G A + + P + D++A+ + C GLTA + + PG TV+V GG
Sbjct: 852062 GVLAEYVAFPEDWFVAAPTSIDDSEASTLPCAGLTAWFALVERGKIKPGDTVLVQ-GTGG 851886
Query: 94 TGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLV-RAAAPKGV 152
+ Q+A +GA V G EK A ++G A ID A DW V R +G+
Sbjct: 851885 VSMFGLQIAAAQGADVFVTSSGPEKLARAKALG-ARHGIDRNAE-DWVEAVYRLTNDRGI 851712
Query: 153 DAVYDGVG 160
D +++ G
Sbjct: 851711 DHIFEIAG 851688
Score = 40.8 bits (94), Expect = 0.14, Method: Composition-based stats.
Identities = 38/131 (29%), Positives = 62/131 (47%)
Frame = +2
Query: 34 GSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGG 93
G++A F + + + P +T +AA++ LTA + G V++HA +GG
Sbjct: 417428 GTFAEFIAMNEADVAAKPKSLTMEEAASMPLVALTAWQALVERAKLKKGQKVLIHAGSGG 417607
Query: 94 TGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVD 153
G + Q+AK GA V L S+G ADVV+DY D+ ++ +G D
Sbjct: 417608 VGAIAIQLAKHIGATVATT-TSTANVDLVRSLG-ADVVVDY-KKDDFENVL-----QGYD 417763
Query: 154 AVYDGVGQATF 164
V + +G+ T
Sbjct: 417764 VVLNSLGKDTL 417796
>gb|CP000454.1| Arthrobacter sp. FB24, complete genome
Length = 4698945
Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats.
Identities = 77/165 (46%), Positives = 94/165 (56%), Gaps = 1/165 (0%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AGTV ++G V+ G RVA G C YA + +V L VP GV D AA
Sbjct: 1658365 GSEAAGTVEEIGDNVTVFSPGDRVATAEGANC---YAGYILVDEDKALPVPRGVDDFTAA 1658195
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A+ QG+TAHYLV+SS+ PG T+++HA AGG GLL Q+ K +GARVI +KA
Sbjct: 1658194 ALPLQGITAHYLVNSSFRVEPGHTILLHAGAGGVGLLAIQLLKAKGARVITTVSTDDKAK 1658015
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAP-KGVDAVYDGVGQATF 164
LA G AD VI Y + VR G DAVYDGVG+ TF
Sbjct: 1658014 LAREAG-ADHVIPY---DGFSAKVRELTDGTGADAVYDGVGKDTF 1657892
Score = 65.1 bits (157), Expect = 7e-09, Method: Composition-based stats.
Identities = 58/163 (35%), Positives = 79/163 (48%), Gaps = 3/163 (1%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETM-LGKRV-AYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQ 58
G E +G + GP VS+ +G RV A G G YA V A +L +PDGV
Sbjct: 733504 GLEVSGRIAGFGPDVSKPFSVGDRVVALLAG----GGYAQQVAVPAEQVLRIPDGVDLVT 733671
Query: 59 AAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEK 118
AA++ T + + + PG TV++H A GG G + Q+AK GA V G AEK
Sbjct: 733672 AASLPEVAATVYSNLIMTAQLQPGETVLIHGATGGIGTMAIQLAKAFGAIVATTAGTAEK 733851
Query: 119 AMLATSVGRADVVIDYVATPDWPPLVRAA-APKGVDAVYDGVG 160
A + AD+ I+Y D+P +RA G D + D VG
Sbjct: 733852 VGTAKAFLGADIAINYTEE-DFPEALRAQNGGHGADVILDVVG 733977
Score = 43.9 bits (102), Expect = 0.017, Method: Composition-based stats.
Identities = 44/154 (28%), Positives = 60/154 (38%), Gaps = 24/154 (15%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGC------------------------TGSY 36
G E AG V +GPGV+ +G RVA GC G
Sbjct: 2040415 GHEIAGVVASIGPGVTHPSVGDRVAIQHYSGCGTCETCRKGWDVHCENARVYSLNRPGGC 2040236
Query: 37 AAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGL 96
+V A + +PD V+ A A + C TA+ + S PG TV+V AG GL
Sbjct: 2040235 QDQVIVTAKDAVVLPDSVSFATGAFLACGATTAYQAIQRS-EVRPGGTVLV-IGAGPVGL 2040062
Query: 97 LVCQMAKLRGARVIGICGGAEKAMLATSVGRADV 130
V A+ G I ++ A+ +G DV
Sbjct: 2040061 AVLTWARALGLHAIATDPSPQRRKFASKIGFTDV 2039960
Score = 42.7 bits (99), Expect = 0.034, Method: Composition-based stats.
Identities = 45/125 (36%), Positives = 57/125 (45%), Gaps = 3/125 (2%)
Frame = +3
Query: 39 FTVVQASALLEVPDGVTDAQA--AAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGL 96
F V+ A+A + A A A+ GLTA+ + PG V V AAG G
Sbjct: 1231680 FAVLDAAATSLARTDLAPASAFLGALGMTGLTAYAGLLKVAEFKPGEVVFVSGAAGAVGS 1231859
Query: 97 LVCQMAKLRGA-RVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAV 155
LV Q+AK GA RVIG G EK +G D +Y P L AA +G+D
Sbjct: 1231860 LVGQIAKAMGASRVIGSAGSPEKVARLLELG-FDAAFNYNDGPVAAQLAAAAGERGIDVY 1232036
Query: 156 YDGVG 160
+D VG
Sbjct: 1232037 FDNVG 1232051
Score = 36.2 bits (82), Expect = 3.3, Method: Composition-based stats.
Identities = 43/154 (27%), Positives = 58/154 (37%), Gaps = 26/154 (16%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRV--AYFGGV-----------------------GCTGS 35
G E G VV +G G + +G+RV A+ GG G
Sbjct: 364256 GHEVVGEVVDLGEGATRFRIGERVGVAWLGGTCGHCRFCLRDQENLCLSPTFTGWDRDGG 364077
Query: 36 YAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHY-LVDSSYPCGPGSTVVVHAAAGGT 94
YA V +PD D QAA +LC G+ + L + P G + GG+
Sbjct: 364076 YADRVTVNEDYAYRIPDVFPDEQAAPLLCAGIIGYRALARAQVPDGGRLGIY---GFGGS 363906
Query: 95 GLLVCQMAKLRGARVIGICGGAEKAMLATSVGRA 128
L Q+A RGA V + E LA +G A
Sbjct: 363905 AHLAAQVAMHRGASVYVMTRSEEARRLALELGAA 363804
Score = 35.8 bits (81), Expect = 4.5, Method: Composition-based stats.
Identities = 40/146 (27%), Positives = 55/146 (37%), Gaps = 37/146 (25%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCT--------------------------- 33
G E AG V VG V++ +G RV GVGC
Sbjct: 268220 GHEIAGIVTDVGSEVTKHAVGDRV----GVGCMVNSCRECVNCQKGEEQYCLKGNIGTYG 268387
Query: 34 ----------GSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGS 83
G Y+ VV ++ +P+G+ AA +LC G+T Y + GPG
Sbjct: 268388 AVDRDGTITQGGYSTHVVVTEDFVVRIPEGIELDVAAPLLCAGITT-YSPLHHWGAGPGK 268564
Query: 84 TVVVHAAAGGTGLLVCQMAKLRGARV 109
V V GG G + ++A GA V
Sbjct: 268565 KVAV-VGLGGLGHMAVKIAHAMGAEV 268639
Score = 35.0 bits (79), Expect = 7.6, Method: Composition-based stats.
Identities = 43/127 (33%), Positives = 57/127 (44%)
Frame = +2
Query: 34 GSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGG 93
GS+A + + L P +T +AA + GLTA Y V + G TV++H AGG
Sbjct: 71354 GSFAEYIALPERLLARKPASLTWNEAAGLPLAGLTA-YQVLNRLDLKAGETVLIHGGAGG 71530
Query: 94 TGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVD 153
G L Q+A GA+VI + S+G V VRA P+GVD
Sbjct: 71531 VGSLGIQIAAALGAKVIATASEKNHDFI-RSLGAEPVSYG----EGLAERVRALRPEGVD 71695
Query: 154 AVYDGVG 160
V D VG
Sbjct: 71696 VVADFVG 71716
Score = 35.0 bits (79), Expect = 8.4, Method: Composition-based stats.
Identities = 38/151 (25%), Positives = 56/151 (37%), Gaps = 25/151 (16%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYF-------------------------GGVGCTGS 35
G EG G VV +G GV++ +G V G GS
Sbjct: 3458746 GHEGVGEVVALGEGVTDLAVGDLVGNAWLWSACGDCQYCRTGWETLCEAQKNAGYSVDGS 3458567
Query: 36 YAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTG 95
+ + +V +P G + A VLC G+T + + + PG V + + GG G
Sbjct: 3458566 FGEYMLVDTRFAARIPAGSDPVEVAPVLCAGVTVYKGLKMT-EAKPGQWVTI-SGIGGLG 3458393
Query: 96 LLVCQMAKLRGARVIGICGGAEKAMLATSVG 126
+ Q A G RV + +K LA G
Sbjct: 3458392 HIAVQYAVAMGLRVAAVDIADDKLALAKKHG 3458300
>gb|CP001196.1| Oligotropha carboxidovorans OM5 strain OM5, complete genome
Length = 3745629
Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats.
Identities = 70/164 (42%), Positives = 94/164 (57%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E +G V VGPGV+ G RVAY+ +G +YA A L+++PD +T Q A
Sbjct: 2140012 GHEASGEVTAVGPGVTNFHPGDRVAYYLNLG---AYATERNAPADRLVKLPDHITYEQGA 2139842
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
++ +GLT YL+ ++ PG+ V++HAAAGG GLL CQ AK GA VIG G EKA
Sbjct: 2139841 VLMLKGLTTWYLLHKTFHVQPGNRVLIHAAAGGVGLLACQWAKALGATVIGTAGSKEKAD 2139662
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
LA + G D VI Y + + + + D VYDGVG+ TF
Sbjct: 2139661 LALANG-CDHVILYKEENFAERVKQISRGELCDVVYDGVGKDTF 2139533
Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats.
Identities = 70/163 (42%), Positives = 92/163 (56%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E +GTV +G GV++ +G+RVA+ GSYA F V A L+ VPD V AA
Sbjct: 2744539 GMEASGTVDAIGEGVTDLRVGQRVAF---CLLRGSYAEFVAVPAWKLVPVPDDVPLEIAA 2744369
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A++ QG TAHYL S++P G + +VHA AGG G L+ Q+AK GA V EK
Sbjct: 2744368 ALMLQGCTAHYLSHSAFPLQKGQSCLVHAGAGGVGQLLIQLAKNLGATVFTTVSTQEKVE 2744189
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQAT 163
+A + G AD I Y L++ + KGVD VYD VG+ T
Sbjct: 2744188 IARNRG-ADHCILYRDVDFREELMKLTSGKGVDVVYDSVGKTT 2744063
Score = 65.1 bits (157), Expect = 6e-09, Method: Composition-based stats.
Identities = 55/161 (34%), Positives = 81/161 (50%), Gaps = 1/161 (0%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AGTVV +G G + +G +V + G YA + V + + +P G++ +AA
Sbjct: 3280404 GLEIAGTVVALGEGARKHKIGDKVM---SLTAGGGYAEYCVAPDAHAITIPAGLSMKEAA 3280574
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+ +T + V PG T +VH + G G QMAK GA+VI G EKA
Sbjct: 3280575 TLPETVMTVWHNVFERCALKPGETFMVHGGSSGIGTTAIQMAKAHGAKVIVTVGSQEKAD 3280754
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAA-APKGVDAVYDGVG 160
++G ADV ++Y T D+ +AA KGV+ + D VG
Sbjct: 3280755 ACVTLG-ADVAVNY-KTQDFVAEAKAATGGKGVNVILDMVG 3280871
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 42/132 (31%), Positives = 64/132 (48%)
Frame = -2
Query: 29 GVGCTGSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVH 88
G G+YA + + A L+ +PD VTD QAA+ TA ++V PG TV+V+
Sbjct: 3310337 GAHLPGAYAQYVKLPAHHLIALPDSVTDEQAASFANAFGTAWHMVVVRGQVRPGETVLVN 3310158
Query: 89 AAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAA 148
+A+ G + Q+ K GA V K A +G AD V++Y +++
Sbjct: 3310157 SASSGVSMAAIQICKNLGAYVYASSSAQWKLDKAIELG-ADEVLNYNEVDFPEEIMKRTK 3309981
Query: 149 PKGVDAVYDGVG 160
+GVD V + VG
Sbjct: 3309980 KRGVDVVIEHVG 3309945
Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 51/189 (26%), Positives = 73/189 (38%), Gaps = 25/189 (13%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYA----------------AFTV--- 41
G E +G +V G + G++V +G + C A F V
Sbjct: 2441242 GAEASGEIVTAGKNATRFKPGQKVVMYGALTCGTCKACREGRDNLCENVAGIMGFHVDGF 2441421
Query: 42 ------VQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTG 95
+ ++ VPD V+ AA T +++ + PG TV+VHA G G
Sbjct: 2441422 ARELMNLDGRLVIPVPDNVSLRDAACAPIAFSTVQHMLFDNAKLQPGETVLVHAGGSGIG 2441601
Query: 96 LLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAV 155
MAK G VI G K ++G AD VI+Y + KGVD V
Sbjct: 2441602 TAAILMAKAIGCTVITTVGSDAKIEGVKALG-ADHVINYRKDRFEGETRKITRKKGVDVV 2441778
Query: 156 YDGVGQATF 164
++ VG TF
Sbjct: 2441779 FEHVGADTF 2441805
Score = 35.0 bits (79), Expect = 7.5, Method: Composition-based stats.
Identities = 43/170 (25%), Positives = 65/170 (38%), Gaps = 38/170 (22%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCT--------------------------- 33
G E G VV+VG V++ G F GVGC
Sbjct: 1479929 GHEIVGRVVRVGANVTKLKAGD----FAGVGCMVDSCRRCFACDEGLEQYCEHGATLTYN 1480096
Query: 34 -----------GSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPG 82
G Y+ VV+ ++++PD + A +LC G+T Y + GPG
Sbjct: 1480097 ARERGSDALTFGGYSEQIVVEQRFVVKIPDTLDLKAVAPLLCAGITT-YSPLRHWRVGPG 1480273
Query: 83 STVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVI 132
V + G + V + AK GARV+ + EK A +G +V++
Sbjct: 1480274 QKVGIIGLGGLGHMGV-KFAKAFGARVVMVTTSPEKGKDARRLGADEVLV 1480420
>emb|AL591688.1| Sinorhizobium meliloti 1021 complete chromosome
Length = 3654135
Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats.
Identities = 72/164 (43%), Positives = 98/164 (59%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G+EGAG V VG GVS +G RVAY G+YA+ V AS LL+VP+G++ AA
Sbjct: 1814628 GKEGAGVVTAVGDGVSMFSVGDRVAY---ASADGAYASERNVDASQLLKVPEGISLETAA 1814458
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A++ +G+TA YL++ ++ GP +T++ HAAAGG G + Q AK GA VIG G EK
Sbjct: 1814457 AMMLKGMTAQYLLNQTFKVGPETTLLFHAAAGGVGFIAGQWAKALGATVIGTAGSQEKID 1814278
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
LA + G D VI+Y + +GVD VYD VG+ T+
Sbjct: 1814277 LALAHGY-DHVINYRTDNFVERVKDLTGGRGVDVVYDSVGRDTY 1814149
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 58/191 (30%), Positives = 85/191 (44%), Gaps = 26/191 (13%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGC----------------TGSYAAFTV--- 41
G E +G V +GPGV+ + G+ V+ +G C G F +
Sbjct: 2098199 GAEASGVVESIGPGVANVLPGQLVSIYGARTCGLCRPCREGRDNLCEHVGGVHGFHLDGF 2098020
Query: 42 ------VQASALLEVPDGVTDAQAA-AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGT 94
+ A L+ P GV + AA A + G H L D++ PG T++VHA G
Sbjct: 2098019 AQEKVNLPARLLVPAPPGVDEIGAALAPVTFGTVEHMLFDNA-KLEPGETILVHAGGSGI 2097843
Query: 95 GLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDA 154
G Q+AK G VI G +K A ++G AD VI+Y + + KGVD
Sbjct: 2097842 GTAAIQLAKKIGCTVITTVGSDDKIDRAKALG-ADHVINYRIDRFEGVVRKLTKKKGVDV 2097666
Query: 155 VYDGVGQATFA 165
V++ VG+ T+A
Sbjct: 2097665 VFEHVGKDTWA 2097633
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 49/164 (29%), Positives = 70/164 (42%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG VV +G G + G +V + G+YA + V A+ L P G A+AA
Sbjct: 1047814 GLEAAGEVVALGEGATGFSTGDKVC---ALANGGAYAEYCAVPATQALRWPKGYDAAKAA 1047984
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A+ T V G T +VH + G G Q+A+ GA V G A K
Sbjct: 1047985 ALPETFFTVWANVFDMARLKSGETFLVHGGSSGIGTTAIQLARAFGAEVFATAGNAAKCE 1048164
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
++G A I+Y +++ +GVD + D VG F
Sbjct: 1048165 ACEALG-AKRAINYREEDFKAVVLQETGGRGVDVILDMVGGRYF 1048293
Score = 48.1 bits (113), Expect = 9e-04, Method: Composition-based stats.
Identities = 44/133 (33%), Positives = 68/133 (51%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E +G VV VG + + +G V + +++ VV + + ++P ++ AA
Sbjct: 642605 GMELSGHVVAVGEEIDDLAVGDAVMAIA----SAAFSTHAVVARAGIAKLPRALSPVAAA 642438
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+ LTA+Y + G T+++H AAGG GL Q+AKL+GA+VI G EK
Sbjct: 642437 TLPVAFLTAYYAIVELGRIQAGETILIHGAAGGVGLAALQVAKLKGAKVIATAGTREKRR 642258
Query: 121 LATSVGRADVVID 133
T +G AD V D
Sbjct: 642257 FLTMLG-ADHVFD 642222
Score = 42.4 bits (98), Expect = 0.051, Method: Composition-based stats.
Identities = 37/110 (33%), Positives = 50/110 (45%), Gaps = 3/110 (2%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G EG G V +VGP V G RV +G +G + F + A VP G+ DAQAA
Sbjct: 973153 GFEGVGIVRRVGPDVQGFKAGDRVV---PIGASGLWQQFLLRPAEWCFHVPGGIEDAQAA 972983
Query: 61 AVLCQGLTAHYLVDS---SYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGA 107
LTA L ++ + G V V AA G ++ ++ L GA
Sbjct: 972982 MSYVNPLTALTLAEALREHFGSLEGMDVGVTAAGSAIGGMLMKLLALEGA 972833
Score = 37.0 bits (84), Expect = 2.2, Method: Composition-based stats.
Identities = 51/186 (27%), Positives = 72/186 (38%), Gaps = 26/186 (13%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVA--YFGGVG----CT------------------GSY 36
G E AGT+ G GV +G RV + G G C+ GS+
Sbjct: 1065031 GHELAGTIAATGRGVLRYRIGDRVTVPFVSGCGRCFECSSGNSQVCEAQFQPGFTHWGSF 1064852
Query: 37 AAFTVVQASA--LLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGT 94
A + + + L+ +P+ + A AA++ C+ T+ V G V VH GG
Sbjct: 1064851 AEYVAIDFAEQNLVHLPETMDFATAASLGCRFATSFRAVVDQARVKGGEWVAVH-GCGGV 1064675
Query: 95 GLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDA 154
GL +A GA I I EK A ++G A I+ T D VR G
Sbjct: 1064674 GLSAIMIAAALGANPIAIDISEEKLAFARTLG-AVATINGRETEDVAGAVRELTRGGAHV 1064498
Query: 155 VYDGVG 160
D +G
Sbjct: 1064497 SLDALG 1064480
Score = 35.8 bits (81), Expect = 5.0, Method: Composition-based stats.
Identities = 39/136 (28%), Positives = 56/136 (41%), Gaps = 24/136 (17%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGC------------------------TGSY 36
G E G VV+VGP VS+ +G+RV+ G + C GS+
Sbjct: 2505195 GHEFMGEVVEVGPAVSKHHVGERVSGEGHIVCGKCRNCRAGRGHLCRNTLGVGVNRPGSF 2505016
Query: 37 AAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGL 96
A F + ++ +PD V D AA G H + G V+V AG G+
Sbjct: 2505015 AEFVCLPEYNVVSIPDDVPDEIAAIFDPFGNAVHTALSFDL---VGEDVLV-TGAGPIGI 2504848
Query: 97 LVCQMAKLRGARVIGI 112
+ +AK GAR + I
Sbjct: 2504847 MGAMVAKRCGARKVVI 2504800
Score = 35.0 bits (79), Expect = 7.1, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 38/81 (46%)
Frame = -1
Query: 29 GVGCTGSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVH 88
G G Y+ VV+ +L +P+ + AA +LC G+T Y + GPG V +
Sbjct: 2895849 GTPTQGGYSDHIVVKEGYVLSIPENLPLDAAAPLLCAGITL-YSPLRHWKAGPGKKVAI- 2895676
Query: 89 AAAGGTGLLVCQMAKLRGARV 109
GG G + ++A GA V
Sbjct: 2895675 VGLGGLGHMGVKLAHAMGAEV 2895613
Score = 35.0 bits (79), Expect = 8.1, Method: Composition-based stats.
Identities = 39/130 (30%), Positives = 57/130 (43%), Gaps = 1/130 (0%)
Frame = -1
Query: 34 GSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGG 93
G + + V+ + P + A+A+ + C GLTA + + G VVV GG
Sbjct: 2639172 GVLSEYVVLPEGWFVAAPKSLDAAEASTLPCAGLTAWFALVEKGHLRAGDRVVVQ-GTGG 2638996
Query: 94 TGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRA-AAPKGV 152
L Q+AK GA VI EK A ++G AD I+ + DW V A +G
Sbjct: 2638995 VALFGLQIAKATGAEVIVTSSSREKLDRAFALG-ADHGINRLEE-DWVERVYALTGDRGA 2638822
Query: 153 DAVYDGVGQA 162
D + + G A
Sbjct: 2638821 DHILEIAGGA 2638792
>dbj|AP007159.1| Aspergillus oryzae RIB40 genomic DNA, SC026
Length = 2324132
Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats.
Identities = 75/169 (44%), Positives = 97/169 (57%), Gaps = 5/169 (2%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSET--MLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQ 58
G EGAGTVV +G G + +G RVA+ TG YA +T V A+ +++PD +TD
Sbjct: 1903317 GREGAGTVVALGSGPNPYGFKVGDRVAWM----TTGGYAEYTAVPAAKTVKIPDEITDED 1903150
Query: 59 AAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEK 118
A A GLT L +Y G V++HAAAGG G L+ Q+ K GA+VIG GG EK
Sbjct: 1903149 AIAGFLSGLTVITLAKETYAVQKGDWVLLHAAAGGAGFLMTQVLKSLGAKVIGTAGGPEK 1902970
Query: 119 AMLATSVGRADVVIDYVAT--PDWPPLVRAAAP-KGVDAVYDGVGQATF 164
L S+G ADVVIDY + DW V+ +GVD VYD VG+ T+
Sbjct: 1902969 VALVKSLG-ADVVIDYRSEEGKDWVKKVKEVTDGRGVDVVYDSVGKDTW 1902826
Score = 55.8 bits (133), Expect = 5e-06, Method: Composition-based stats.
Identities = 36/116 (31%), Positives = 57/116 (49%)
Frame = -2
Query: 3 EGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAAAV 62
E G +V +G V + +G +VA V G + + V A + +++ D A+V
Sbjct: 421441 ECTGHIVAMGSDVRDLNIGDKVA----VMYPGYFGTYETVPAWSCVQLRDDEDLRTMASV 421274
Query: 63 LCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEK 118
+ TA Y + PG T+++H+AAGG G+ Q+AKL GA + G EK
Sbjct: 421273 MMVFSTAMYALYHRANLQPGETILIHSAAGGVGIATIQLAKLIGAEIFATVGTEEK 421106
Score = 38.5 bits (88), Expect = 0.82, Method: Composition-based stats.
Identities = 37/132 (28%), Positives = 58/132 (43%), Gaps = 5/132 (3%)
Frame = -3
Query: 34 GSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLV---DSSYPCGPGSTVVVHAA 90
G+ + + S + E P+ ++DA+AAA+ GLTA + G G+ V++
Sbjct: 828837 GTMQEYLTIDESEVEEAPEHLSDAEAAALPLTGLTAWRALVVKAGERNSGKGAAVLLTGI 828658
Query: 91 AGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAP- 149
GG L+ + A +GA V EK A +G A ++Y L+ P
Sbjct: 828657 GGGVALMALRFAVAKGADVYVTSSSQEKIQKAIELG-AKGGVNYKEEAWEKKLLTMLPPG 828481
Query: 150 -KGVDAVYDGVG 160
K DA+ DG G
Sbjct: 828480 KKAFDAIIDGAG 828445
>gb|EF643459.1| Uncultured bacterium clone CLBB-65 genomic sequence
Length = 10355
Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats.
Identities = 74/169 (43%), Positives = 94/169 (55%), Gaps = 5/169 (2%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
GEEG+GTVV VG GV+ +G R+A+ GSY V ++VP+G+ A
Sbjct: 5428 GEEGSGTVVAVGRGVTRFRVGDRIAW---TTVLGSYGELVAVPEGKAIKVPEGIDLLTAG 5598
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A L QG+TAHYLV+ SY G V++HAAAGG GLL Q+ K RG VIG +EKA
Sbjct: 5599 AALVQGMTAHYLVNDSYKAKEGDVVLLHAAAGGVGLLATQLLKQRGVTVIGTVSTSEKAK 5778
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPK-----GVDAVYDGVGQATF 164
L G +D+V D + AA GV AVYDG+G+ATF
Sbjct: 5779 LVKENG-----VDHVLIHDKDVNLAAAVKALTGGLGVHAVYDGIGKATF 5910
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence
Length = 3809201
Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats.
Identities = 71/164 (43%), Positives = 93/164 (56%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V ++G GV+ G RVAY G+YA V+ A+ L+++PD + AA
Sbjct: 1155637 GMEAAGEVTEIGDGVTTLKPGDRVAYVAQP--PGAYAQERVLAAAKLVKLPDAIGYEDAA 1155810
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+V+ QGLTA YL+ +Y PG T+++HAAAGG GLLVCQ AK GA VIG G EKA
Sbjct: 1155811 SVMLQGLTAQYLLRRTYAVKPGDTILIHAAAGGVGLLVCQWAKALGATVIGTVGSDEKAA 1155990
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
LA + G D I Y + GV VYD +G+ T+
Sbjct: 1155991 LAKAHG-CDHPIVYTRENFTERVKEITNGAGVPVVYDSIGKDTY 1156119
Score = 88.2 bits (217), Expect = 7e-16, Method: Composition-based stats.
Identities = 68/166 (40%), Positives = 90/166 (54%), Gaps = 1/166 (0%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G EGAG V VG V+ G RVAY G G+YA V+ AS L+ +PD ++ A
Sbjct: 1717014 GFEGAGVVEAVGSEVTRLRPGDRVAYTGAP--IGAYAESRVLPASRLVRIPDALSFETAG 1716841
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+ + +GLTAH L+ +P G ++VHAAAGG G +V + AK GA+VIG G A K
Sbjct: 1716840 SSMLRGLTAHMLLHKVHPTTRGDWILVHAAAGGLGQIVVRWAKRLGAQVIGTVGSAGKIE 1716661
Query: 121 LATSVGRADVVIDYVATPDWP-PLVRAAAPKGVDAVYDGVGQATFA 165
LA G V++ A P W VR A +GV DG+G + A
Sbjct: 1716660 LARVAGADHVLLH--ADPGWADEAVRIAERRGVHLAVDGIGGSMVA 1716529
Score = 55.1 bits (131), Expect = 7e-06, Method: Composition-based stats.
Identities = 49/160 (30%), Positives = 74/160 (46%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V++VG VS G V F + S+A V +A+A+ P ++ +AA
Sbjct: 1513771 GMELAGRVMRVGRDVSGFAPGDAVLGFA----SASFATRVVTRAAAIAHKPSRLSFEEAA 1513938
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+ TA+Y + G V+VH AAGG G+ Q+A+ GA V G EK
Sbjct: 1513939 TIPTTFFTAYYALAELARLRRGERVLVHGAAGGVGIATVQLARHFGAEVFATAGSDEKRE 1514118
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
+G AD V+D + ++ +GVD V + +
Sbjct: 1514119 FVRLIG-ADHVLDSRSLSFADEILALTNGEGVDIVLNSLA 1514235
Score = 54.7 bits (130), Expect = 9e-06, Method: Composition-based stats.
Identities = 38/99 (38%), Positives = 51/99 (51%)
Frame = +2
Query: 66 GLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSV 125
G+TA Y ++ G T+VV AA+G G + Q+AKL G R +G+ GGA+K
Sbjct: 2427218 GVTAWYGLNRIIRPRAGETIVVSAASGAVGSVAGQLAKLAGCRAVGVAGGADKCRYVVDT 2427397
Query: 126 GRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
D +DY A L AAAP GVD ++ VG A
Sbjct: 2427398 LGFDACVDYKAGRLAEDLA-AAAPDGVDGYFENVGGAVL 2427511
Score = 41.6 bits (96), Expect = 0.077, Method: Composition-based stats.
Identities = 39/134 (29%), Positives = 59/134 (44%), Gaps = 2/134 (1%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCT--GSYAAFTVVQASALLEVPDGVTDAQ 58
G E AG V +GPGV+ +G V+ + + G+Y V A ++ P + +
Sbjct: 429133 GYEAAGVVSALGPGVTGFAIGDAVSIVPPLSISRWGTYGEVATVPADVAVKHPASLGWTE 428954
Query: 59 AAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEK 118
AAAV Q +TA + G VV+ AA+ GL Q+A++ GA I K
Sbjct: 428953 AAAVWMQYVTAWGALIDLAQIKRGDAVVITAASSSVGLAAIQVARMAGAVAIATTRTDAK 428774
Query: 119 AMLATSVGRADVVI 132
A G V++
Sbjct: 428773 AQALREFGADHVIV 428732
>emb|AM406670.1| Azoarcus sp. BH72, complete genome
Length = 4376040
Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats.
Identities = 69/164 (42%), Positives = 92/164 (56%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G EGAG V VG GV++ +G RVAY G G+YA + A L+++PD ++ Q A
Sbjct: 3536911 GSEGAGVVEAVGEGVTDLAVGDRVAY--ATGPLGAYAEVRNLPADRLVKLPDAISFEQGA 3536738
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A + QGLT YL+ +Y G T+++HAAAGG G +VCQ AK GA VIG G EKA
Sbjct: 3536737 AAMLQGLTVQYLLRRTYRVQAGDTILIHAAAGGVGTIVCQWAKALGATVIGTVGSDEKAA 3536558
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
LA + G D I Y + +G+ VYD +G+ TF
Sbjct: 3536557 LARAHG-CDHPIVYTRENFAERVREITGGEGLPVVYDSIGKDTF 3536429
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 67/162 (41%), Positives = 77/162 (47%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AGTV VG GVS G RV F G YA +AS +PD V AA
Sbjct: 3346856 GGEVAGTVAAVGEGVSHVRPGDRVCAFTSYG---GYAELCRAKASQTWPLPDAVGFEAAA 3346686
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A L TA + + G TV+V AAGG GL Q+AK GARVI G AE+
Sbjct: 3346685 AGLVTYGTAWFGLHDRARIQAGETVLVLGAAGGVGLAAVQIAKAAGARVIAAAGSAERLA 3346506
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQA 162
L G ADV+IDY A + A +G D V D VG A
Sbjct: 3346505 LCREHG-ADVLIDYTAADLKDAVKAATGGQGADIVVDVVGGA 3346383
>gb|CP000912.1| Brucella suis ATCC 23445 chromosome II, complete sequence
Length = 1400844
Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats.
Identities = 70/164 (42%), Positives = 94/164 (57%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G EGAG VV VG GV +G+RVAY GSYA ++ A L++VPD + AA
Sbjct: 550932 GNEGAGIVVAVGAGVENVRVGERVAY---AATPGSYADERILPADRLVKVPDTIDLKTAA 550762
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+++ +G+TA YL+ ++ PG T++ HAAAGG GL+ Q AK GA VIG G EK
Sbjct: 550761 SMMLKGMTAQYLLRRTFRVEPGQTILFHAAAGGVGLIAGQWAKHLGATVIGTAGSEEKIA 550582
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
LA G D VI+Y + + +GVD VYD VG+ T+
Sbjct: 550581 LARKHGY-DHVINYRSENFVERVRELTNGEGVDVVYDSVGRNTY 550453
Score = 53.1 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 53/161 (32%), Positives = 68/161 (42%), Gaps = 1/161 (0%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRV-AYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQA 59
G E AG +V +G GV G +V A G G YA + VV S L +P G +A
Sbjct: 1183541 GLEIAGDIVALGHGVKRFRKGDQVVALLAG----GGYAEYAVVHESNALPLPSGFGYIEA 1183374
Query: 60 AAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKA 119
AA+ T + V G +VH + G G Q+AK GA VI G EK
Sbjct: 1183373 AAIPETFFTVWHNVFERGGLKEGEVFLVHGGSSGIGTTAIQLAKAFGATVITTAGSKEKC 1183194
Query: 120 MLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
+G AD I+Y + KGVD + D VG
Sbjct: 1183193 DACVKLG-ADRAINYHEEDFVAVVKEMTGGKGVDVILDMVG 1183074
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 47/161 (29%), Positives = 76/161 (47%), Gaps = 1/161 (0%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E +G V+++ V+ G R+ + G+Y+ +VQA + VP G++ +AA
Sbjct: 373109 GLELSGVVLEIAEDVTRFGPGDRIM---ALVAGGAYSEEAIVQADVCIPVPAGLSMVEAA 373279
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+ T + PG TV++H G G+ +AK GAR+I CG +K
Sbjct: 373280 GIPETYFTVWSNLFQHAGLQPGETVLLHGGTSGIGVTATLLAKAIGARMITTCGSDDKCR 373459
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAP-KGVDAVYDGVG 160
+ ++G A I+Y T D+ RA +G + V D VG
Sbjct: 373460 ASEALG-AIASINY-RTTDFVEAGRALTEGRGPEVVIDMVG 373576
>gb|CP001124.1| Geobacter bemidjiensis Bem, complete genome
Length = 4615150
Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats.
Identities = 71/164 (43%), Positives = 91/164 (55%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G EGAG V VG GV+ G RVAY G +G SY ++ A ++ +PD + QAA
Sbjct: 1383483 GNEGAGVVEAVGEGVTLVKPGDRVAYAGALG---SYCQKRIIPADRVVLMPDSIGFEQAA 1383653
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A++ +GLT YL+ +Y G TVV HAAAGG GL+ CQ K GARVIG G EK
Sbjct: 1383654 AMMLKGLTVQYLIRRTYRVQQGETVVFHAAAGGVGLIACQWLKHLGARVIGTAGSEEKCE 1383833
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
LA G A+ ++Y + +GV VYDGVG+ TF
Sbjct: 1383834 LARRHG-AETCLNYRTDSIVERVREITKGEGVPVVYDGVGKDTF 1383962
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 49/165 (29%), Positives = 77/165 (46%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG VV+ G V + G V + G+ ++A + + P V+ +A+
Sbjct: 615097 GSECAGEVVETGANVRQFKKGDFVIGYPGIKRLAAFAEYVCADKGSTFVKPGNVSSEEAS 615276
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+ GLTA + G V+++ A+GG G Q+AK+ GARV +C A A
Sbjct: 615277 TLPIAGLTALRALRDLGKVAEGGHVLINGASGGVGTFAVQIAKILGARVTAVC-SASNAA 615453
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATFA 165
L +G AD V+DY A D+ + D V+D + + +FA
Sbjct: 615454 LVQDLG-ADRVLDY-AHEDF-----TKGGERFDVVFDAIAKRSFA 615567
Score = 59.7 bits (143), Expect = 3e-07, Method: Composition-based stats.
Identities = 50/166 (30%), Positives = 74/166 (44%), Gaps = 1/166 (0%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG + ++GPGV+ G RV G G YA + V A L+ VP+ V+ +AA
Sbjct: 3809474 GLEVAGIIEELGPGVTGWKKGDRVVSLVG---GGGYAEYAVAYACHLMPVPETVSFEEAA 3809304
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+ +TA V G T ++H GG Q+ K + I + + +
Sbjct: 3809303 CICESYITAFLNVFMIGGLKDGETAILHGGGGGVNTAAIQLCKALAPKSKLIVTASPEKL 3809124
Query: 121 LATSVGRADVVIDYVATPDWPPLVRA-AAPKGVDAVYDGVGQATFA 165
AD+VI++ TPD+ V+ KGVD + D VG A
Sbjct: 3809123 ERVKQLGADLVINFKETPDFSEAVKEFTNKKGVDVILDHVGAKYLA 3808986
>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence
Length = 3806533
Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats.
Identities = 76/165 (46%), Positives = 95/165 (57%), Gaps = 1/165 (0%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V VG GV G RVAY G+YA + V A+ L+ VPD ++D QAA
Sbjct: 269923 GHEAAGVVEAVGAGVRGFAPGDRVAYMNA--GLGAYADYRNVPAAKLVRVPDSISDEQAA 270096
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
AV+ +G+TA YLV ++ G V++HAAAGG G ++ AK GA VIG G EK
Sbjct: 270097 AVIFKGMTAQYLVRHTHAVKAGDAVLIHAAAGGVGQILSSWAKALGAYVIGTAGSPEKCE 270276
Query: 121 LATSVGRADVVIDYVATPDWPPLVR-AAAPKGVDAVYDGVGQATF 164
LA +G DV IDY + DW VR A +GV VYD VG+ TF
Sbjct: 270277 LARRMG-CDVAIDY-RSGDWVKAVREATGGRGVRVVYDAVGKDTF 270405
Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats.
Identities = 69/164 (42%), Positives = 90/164 (54%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G EGAG V VG GV+ +G RVAY G G+Y+ V+ A ++ +P+ ++ Q A
Sbjct: 2744407 GMEGAGVVEAVGEGVAHLSVGDRVAYAGRP--NGAYSQVRVMPADIVVRLPESISFEQGA 2744234
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A++ QGLT YL+ SY G TV++HAAAGG GL+ CQ K G VIG G EKA
Sbjct: 2744233 AMMLQGLTVQYLIRDSYRVQAGDTVLLHAAAGGVGLIACQWLKALGVTVIGTVGSDEKAE 2744054
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
LA + G V+ Y + KGV AVYD +G TF
Sbjct: 2744053 LARAHGCTHTVV-YTRESFVDRVKEITGGKGVPAVYDSIGADTF 2743925
Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats.
Identities = 67/165 (40%), Positives = 91/165 (55%), Gaps = 1/165 (0%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E G V VGP V+ G RV Y G G+YA +V A L+++PDG++D A
Sbjct: 1598868 GREAVGVVEAVGPDVTSLKPGDRVVY---SGVQGAYAQVRLVPADRLVKLPDGISDEIGA 1599038
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
AV+ +G+TA +L +Y G T++VHAAAGG GL++CQ AK GA VIG EKA
Sbjct: 1599039 AVMQKGMTAQFLCRQTYQVGKDDTILVHAAAGGVGLVLCQWAKHLGATVIGTVSTEEKAK 1599218
Query: 121 LATSVGRADVVIDYVATPDWPPLVRA-AAPKGVDAVYDGVGQATF 164
L + G +I D+ +V+ GV VYD +G+ TF
Sbjct: 1599219 LVEAHGCDHALIH--GKDDFVEVVKEITGGVGVPVVYDSIGKDTF 1599347
Score = 95.1 bits (235), Expect = 7e-18, Method: Composition-based stats.
Identities = 66/165 (40%), Positives = 93/165 (56%), Gaps = 1/165 (0%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V +GPGV+ +G RV Y G + G+Y+ +V A+ L+ +P+ + AA
Sbjct: 2370387 GVEAAGVVQAIGPGVTNVAVGDRVTYTGFINTLGAYSTERLVPAAPLIRLPETIGFETAA 2370208
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A+ +GLT+ YL+ Y G T+++HAAAGG GL+V Q AKL G VIG KA
Sbjct: 2370207 AMTMRGLTSAYLMRRIYNFKAGDTILLHAAAGGVGLIVSQWAKLLGLTVIGTVSSEAKAE 2370028
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPK-GVDAVYDGVGQATF 164
+A + G D +I+Y + D VR GV V+D VG+ TF
Sbjct: 2370027 VARAHG-CDYIINY-SHEDVAKRVRELTDGVGVSVVFDSVGKNTF 2369899
Score = 93.2 bits (230), Expect = 3e-17, Method: Composition-based stats.
Identities = 64/165 (38%), Positives = 93/165 (56%), Gaps = 1/165 (0%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG + VGPGV+ +G RV Y G G+Y+ ++ A+ L+++P ++ AA
Sbjct: 1718198 GNEAAGLIEAVGPGVTHLSVGDRVTYTGFTNTLGAYSTERLIAAAPLIKLPPEISCEVAA 1718377
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A+ +GL+A YL+ +P G T+++HAAAGG GL++ Q AKL G VIG KA
Sbjct: 1718378 AMTMRGLSASYLMRRIWPFKAGDTILLHAAAGGAGLIISQWAKLLGLNVIGTVSTDAKAE 1718557
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPK-GVDAVYDGVGQATF 164
+A + G D I+Y + D VR GV V+D VG+ TF
Sbjct: 1718558 VARAHG-CDHTINY-SHEDVAKRVRELTDGVGVSVVFDSVGKDTF 1718686
Score = 56.2 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 37/98 (37%), Positives = 51/98 (52%), Gaps = 3/98 (3%)
Frame = +2
Query: 66 GLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSV 125
G+TA Y ++ G TVVV AA+G G +V Q+AKL G R +G GG +K +
Sbjct: 1529390 GVTAWYGLNKIIQPKAGQTVVVSAASGAVGSVVGQLAKLAGCRAVGFAGGKDKCDYVVNE 1529569
Query: 126 GRADVVIDYVATPDWPPL---VRAAAPKGVDAVYDGVG 160
D IDY A D L ++ A P G+D ++ VG
Sbjct: 1529570 LGFDACIDYKAAKDSKELYTMLKEATPNGIDGYFENVG 1529683
Score = 48.5 bits (114), Expect = 7e-04, Method: Composition-based stats.
Identities = 48/163 (29%), Positives = 75/163 (46%), Gaps = 3/163 (1%)
Frame = -3
Query: 1 GEEGAGTVVKVGPG-VSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQA 59
G EGAG VV+ G ++ ++GK VA GG Y+ + + A L +P+G T A
Sbjct: 2083523 GNEGAGVVVEAGSSPAAQALMGKTVAAIGG----AMYSQYRCIPADQCLVLPEGATPADG 2083356
Query: 60 AAVLCQGLTAHYLVDSSYPCGPGSTVVVH-AAAGGTGLLVCQMAKLRGARVIGICGGAEK 118
A+ LTA +V++ G + +VH AAA G ++ Q+ G +++ I E+
Sbjct: 2083355 ASSFVNPLTALGMVETMRL--EGHSALVHTAAASNLGQMLNQICLKDGIKLVNIVRKQEQ 2083182
Query: 119 AMLATSVGRADVVIDYVATPDW-PPLVRAAAPKGVDAVYDGVG 160
A L + G V A+P + L A G +D G
Sbjct: 2083181 ADLLKAQGAVHVC--NAASPTFMQDLTEALVSTGATIAFDATG 2083059
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 58/162 (35%), Positives = 78/162 (48%), Gaps = 2/162 (1%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRV-AYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQA 59
G E AG V VG GV+ G V AY G G++A+ A+ ++ +P GV A
Sbjct: 2307107 GSELAGIVTAVGAGVTHVKPGDNVIAYLG----NGAFASHVKAPANKVVPMPPGVDYETA 2307274
Query: 60 AAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKA 119
AA T+H+ V G T++V AAGG GL ++ K GARVI EK
Sbjct: 2307275 AAFTLTYGTSHHAVVDRGELKAGQTMLVLGAAGGVGLAAIEIGKAIGARVIAAASTDEKL 2307454
Query: 120 MLATSVGRADVVIDYVATPDWPPLVRAAAP-KGVDAVYDGVG 160
+ G AD +I+Y +T D V+A G D +YD VG
Sbjct: 2307455 AVCKEHG-ADALINY-STEDLRERVKALTDGNGPDVIYDPVG 2307574
Score = 40.8 bits (94), Expect = 0.15, Method: Composition-based stats.
Identities = 53/170 (31%), Positives = 70/170 (41%), Gaps = 6/170 (3%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG +++V P V+ G+RVA G +A V A + VPD + A AA
Sbjct: 2103510 GTEAAGEIIEVAPDVTRLRPGQRVA---AALDWGGFAQEVVTTADTVYPVPDALDLASAA 2103340
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A+ T + PG T++VH A+G G Q+ +L GA VI K
Sbjct: 2103339 ALPVTYGTVWAALAWRAMLQPGETMLVHGASGSLGTAAVQVGRLMGAHVIATASTEAKRE 2103160
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPK------GVDAVYDGVGQATF 164
A G A + P AA K GVD V+D VG F
Sbjct: 2103159 AALHNGAAHALSS-------DPQSLAAEVKALCHAGGVDVVFDPVGGDLF 2103031
Score = 40.0 bits (92), Expect = 0.25, Method: Composition-based stats.
Identities = 36/111 (32%), Positives = 52/111 (46%), Gaps = 2/111 (1%)
Frame = +3
Query: 3 EGAGTVVKVGPGVSETMLGKRV-AYFGGVGCT-GSYAAFTVVQASALLEVPDGVTDAQAA 60
+GAG + +G GV + MLG R+ +FG G G+ A + V +P+ + AQ A
Sbjct: 1726020 DGAGVIDALGHGVDQKMLGTRIWLHFGQRGRPFGTAAEYICVPHELTSPLPEHLDFAQGA 1726199
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIG 111
+ +TA Y+ G V+V AG G Q+AK GA VI
Sbjct: 1726200 CLGIPAMTA-YIALFQRGAIKGKYVLVTGGAGAVGHYAVQLAKWGGAHVIA 1726349
Score = 38.9 bits (89), Expect = 0.55, Method: Composition-based stats.
Identities = 38/137 (27%), Positives = 55/137 (40%), Gaps = 5/137 (3%)
Frame = +3
Query: 34 GSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTA-HYLVDSSY----PCGPGSTVVVH 88
G YA + L P G++D +AAA+ T + D Y P G T+++
Sbjct: 1046958 GGYAQLCTAPVAQCLPAPKGLSDIEAAALPETFFTVWSNVFDRGYLGQGPRGKDETLLIQ 1047137
Query: 89 AAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAA 148
+ G G Q+AK G +V G EK +G AD I+Y +
Sbjct: 1047138 GGSSGIGTTAIQIAKALGYKVFVTAGTDEKCKACEDLG-ADRAINYKTQDFVAEVASLTE 1047314
Query: 149 PKGVDAVYDGVGQATFA 165
KGVD + D V + A
Sbjct: 1047315 GKGVDVILDMVAGSYLA 1047365
>gb|AE014292.2| Brucella suis 1330 chromosome II, complete sequence
Length = 1207381
Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats.
Identities = 70/164 (42%), Positives = 94/164 (57%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G EGAG VV VG GV +G+RVAY GSYA ++ A L++VPD + AA
Sbjct: 550346 GNEGAGIVVAVGAGVENVRVGERVAY---AATPGSYADERILPADRLVKVPDTIDLKTAA 550176
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+++ +G+TA YL+ ++ PG T++ HAAAGG GL+ Q AK GA VIG G EK
Sbjct: 550175 SMMLKGMTAQYLLRRTFRVEPGQTILFHAAAGGVGLIAGQWAKHLGATVIGTAGSEEKIA 549996
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
LA G D VI+Y + + +GVD VYD VG+ T+
Sbjct: 549995 LARKHGY-DHVINYRSENFVERVRELTNGEGVDVVYDSVGRDTY 549867
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 47/161 (29%), Positives = 76/161 (47%), Gaps = 1/161 (0%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E +G V+++ V+ G R+ + G+Y+ +VQA + VP G++ +AA
Sbjct: 371920 GLELSGVVLEIAEDVTRFGPGDRIM---ALVAGGAYSEEAIVQADVCIPVPAGLSMVEAA 372090
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+ T + PG TV++H G G+ +AK GAR+I CG +K
Sbjct: 372091 GIPETYFTVWSNLFQHAGLQPGETVLLHGGTSGIGVTATLLAKAIGARMITTCGSDDKCR 372270
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAP-KGVDAVYDGVG 160
+ ++G A I+Y T D+ RA +G + V D VG
Sbjct: 372271 ASEALG-AIASINY-RTTDFVEAGRALTEGRGPEVVIDMVG 372387
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome
Length = 4296230
Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats.
Identities = 73/164 (44%), Positives = 94/164 (57%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V VG GV + G RVAY GG G+YA + A L+++PD V+ Q A
Sbjct: 2604332 GLEAAGVVEAVGEGVDDLAPGDRVAYAGGP--LGAYADLRNMPADRLVKLPDPVSFEQGA 2604505
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A++ QGLTA YL+ +Y PG T+++HAAAGG GL+VCQ AK GA VIG G EKA
Sbjct: 2604506 AMMLQGLTAQYLLRRTYRVQPGDTILIHAAAGGVGLIVCQWAKALGATVIGTVGTDEKAA 2604685
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
LA + G D I Y + +G+ VYD +G+ TF
Sbjct: 2604686 LARAHG-CDHSIVYTRENFAERVREITGGEGLPVVYDSIGKDTF 2604814
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 51/162 (31%), Positives = 74/162 (45%), Gaps = 2/162 (1%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCT--GSYAAFTVVQASALLEVPDGVTDAQ 58
G E AGTV +G GV +G+ V G YA +V A+A+++ P G++ A+
Sbjct: 3420646 GYEAAGTVDALGQGVGGFEIGEAVCVIPEFSMNRYGVYAEQAIVPAAAVVKRPPGLSTAE 3420467
Query: 59 AAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEK 118
AAAV LTA+ + G G VV+ AA+ GL Q+A GA I + K
Sbjct: 3420466 AAAVWMPYLTAYGALIDVVRLGQGDAVVITAASSSVGLAAIQIANSVGAVPIAVTRTEAK 3420287
Query: 119 AMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
+ G A V++ A ++R G V+D VG
Sbjct: 3420286 RAELQAAGAAHVIVSQ-AQDIAAEVMRITGGDGARMVFDPVG 3420164
Score = 42.7 bits (99), Expect = 0.038, Method: Composition-based stats.
Identities = 54/182 (29%), Positives = 71/182 (39%), Gaps = 19/182 (10%)
Frame = -1
Query: 3 EGAGTVVKVGPGVSETMLGKRV------------------AYFGGVGCTGSYAAFTVVQA 44
+GAG V +G GV E +G V + G G G V A
Sbjct: 190367 DGAGVVEAIGEGVDEFAVGDAVVSTFFPHWLDGEAPIADFSTTPGDGVDGYACELVVRPA 190188
Query: 45 SALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKL 104
+A P G + AQAA + GLTA + + G +V+V GG + Q AK
Sbjct: 190187 TAFTHSPRGYSHAQAATLTTAGLTAWRALIYNGGLKAGDSVLV-LGTGGVSIFALQFAKA 190011
Query: 105 RGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLV-RAAAPKGVDAVYDGVGQAT 163
GA VI EK A ++G A I+Y + W V GVD V + G T
Sbjct: 190010 MGATVIATSSSDEKLEHARALG-ASHTINYCSQAQWASRVLDFTGGCGVDHVIEVGGPGT 189834
Query: 164 FA 165
A
Sbjct: 189833 LA 189828
Score = 37.4 bits (85), Expect = 1.5, Method: Composition-based stats.
Identities = 34/119 (28%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Frame = +2
Query: 47 LLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRG 106
L VPDG+TD Q ++C + + + +V A G GL AKLRG
Sbjct: 1859012 LAPVPDGLTDEQV--LMCPDIMSTGFAGAEAANIRIGDIVAVFAQGPIGLCATAGAKLRG 1859185
Query: 107 ARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG-QATF 164
A +I G ++ + + ADV +++ ++R +GVDA + +G Q+TF
Sbjct: 1859186 ASLIIAVDGVDERLRISRNMGADVTLNFREVDVVSEILRITGGRGVDAAVEALGLQSTF 1859362
>dbj|AP009384.1| Azorhizobium caulinodans ORS 571 DNA, complete genome
Length = 5369772
Score = 105 bits (263), Expect = 3e-21, Method: Composition-based stats.
Identities = 75/164 (45%), Positives = 92/164 (56%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G EGAG V VGP V G RVAY +G SYA V A+ L+ VP + D AA
Sbjct: 2305129 GNEGAGEVEAVGPHVEGFHAGDRVAYATSLG---SYAEARNVPANVLVHVPAAIDDRTAA 2305299
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A++ +G+TA YLV ++ PG ++V AAAGG GLL+CQ A GA VIG G KA
Sbjct: 2305300 AMMLKGMTAQYLVKHTHAVKPGDVILVQAAAGGVGLLLCQWAHALGATVIGTVGSKAKAE 2305479
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
LA + G AD VI Y + + K D VYDGVGQAT+
Sbjct: 2305480 LALANG-ADHVILYKDEDFVHRVKEITSGKMCDVVYDGVGQATY 2305608
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 70/165 (42%), Positives = 95/165 (57%), Gaps = 1/165 (0%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V VG GV+ +G R+AY G+YA + A L+ +PD ++D +AA
Sbjct: 1041972 GHEAAGIVEAVGEGVTSLKVGDRIAYINA--GIGAYADRRNLPAERLVTIPDSISDEEAA 1042145
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
AV+ +GLTA YL+ +Y PG V++HAAAGG G ++ AK GA VIG G K
Sbjct: 1042146 AVIFKGLTAQYLLRKTYKVEPGDIVLIHAAAGGVGQIMSSWAKALGAFVIGTAGSPAKCD 1042325
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAA-PKGVDAVYDGVGQATF 164
+A + G DV I+Y + DWP V AA+ + VYD VG+ TF
Sbjct: 1042326 IAKAAG-CDVAINY-SQADWPEQVIAASGGRKARVVYDSVGKDTF 1042454
Score = 61.6 bits (148), Expect = 7e-08, Method: Composition-based stats.
Identities = 58/167 (34%), Positives = 81/167 (48%), Gaps = 9/167 (5%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAY---------FGGVGCTGSYAAFTVVQASALLEVP 51
G + AG VV+ G GV++ +G RV G G + V+A L+ +P
Sbjct: 31001 GLDLAGEVVETGEGVTDFTVGDRVLVDPLNRVEGGLMGETVDGGLQQYARVRAHQLVPIP 31180
Query: 52 DGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIG 111
+GVT QAAA+ TAH ++ ++ G TV+V A+GG G +AKL GA VI
Sbjct: 31181 EGVTYEQAAALPVAYGTAHRMLFTNGGIKAGDTVLVLGASGGVGTGTVLLAKLAGAHVIA 31360
Query: 112 ICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDG 158
AEK ++G AD VIDY + D+ + A K YDG
Sbjct: 31361 CGSSAEKLERLKAMG-ADEVIDYTRS-DFTKDIYARFGKPHRRTYDG 31495
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 52/160 (32%), Positives = 69/160 (43%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AGTVV GP +G RV + G YA + A L +PDG++ +AA
Sbjct: 548938 GLEIAGTVVATGPETQRFKVGDRVC---ALVTGGGYAEYCTTSALTALPIPDGLSATEAA 548768
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A+ T V PG ++VH G G Q+AK G++V G EK
Sbjct: 548767 ALPETFFTVWSNVFDRGRLQPGEVLLVHGGTSGIGTTAIQLAKAFGSKVFVTVGSPEKCE 548588
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
A +G AD+ IDY + A KG D + D V
Sbjct: 548587 AARKLG-ADLAIDYNTQDFVAEVKSATGGKGADVILDMVA 548471
Score = 55.5 bits (132), Expect = 6e-06, Method: Composition-based stats.
Identities = 62/194 (31%), Positives = 88/194 (45%), Gaps = 30/194 (15%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGC----------------TGSYAAFTV--- 41
G E AG +V +G V +G+ V+ +G + C G F V
Sbjct: 2735254 GAEAAGEIVALGADVRGLKVGQTVSMYGALTCGHCSNCLKGRDNLCENVGGVLGFHVDGF 2735433
Query: 42 ------VQASALLEVPDGVTDAQAAAVLCQGLT----AHYLVDSSYPCGPGSTVVVHAAA 91
+ ++ P+GVT +AA C G+T H L D++ G TV+VHA
Sbjct: 2735434 ARDVLNMPERLVIPAPEGVTFEEAA---CAGITFSTVEHMLFDNA-KLEKGETVLVHAGG 2735601
Query: 92 GGTGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPK- 150
G G ++AK GA VI G EKA A ++G AD VI+Y T + +VR K
Sbjct: 2735602 SGIGSAAIRLAKDVGATVITTVGDDEKAAKAEALG-ADHVINY-KTERFEHMVRKITKKV 2735775
Query: 151 GVDAVYDGVGQATF 164
GVD V++ VG T+
Sbjct: 2735776 GVDVVFEHVGVDTW 2735817
Score = 55.1 bits (131), Expect = 7e-06, Method: Composition-based stats.
Identities = 56/167 (33%), Positives = 79/167 (47%), Gaps = 2/167 (1%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCT--GSYAAFTVVQASALLEVPDGVTDAQ 58
G + AG + VG V+ +G++V G YA + A+A+ + D V+ +
Sbjct: 2162951 GNDVAGYIETVGRDVTGLEVGQKVLLSARDLSQRGGCYAEYVCAPANAVHPLADSVSCEE 2163130
Query: 59 AAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEK 118
A + + L ++S P P TV+V AAGG G + Q+A+L G R IG AEK
Sbjct: 2163131 AVCLANYQVAWALLHEASGP-RPPQTVLVIGAAGGVGSALLQLARLAGMRTIGSVSTAEK 2163307
Query: 119 AMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATFA 165
A A ++G DVV Y A + A GVD V D V A FA
Sbjct: 2163308 AEFARAMGADDVVF-YRAENVVDRTLELTAGAGVDLVLDHVCGADFA 2163445
Score = 52.8 bits (125), Expect = 4e-05, Method: Composition-based stats.
Identities = 60/160 (37%), Positives = 79/160 (49%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V+ +GPGV+ +G RV G VG G+ VV+A L VPD + +AA
Sbjct: 848761 GGEFAGRVLALGPGVTGPKVGTRVC--GNVG-YGAARERLVVRADRLAVVPDDLDLVRAA 848931
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
++ T+ Y + G T+VV AAGG GL ++ K+ GARVI +K
Sbjct: 848932 GLIITYGTSLYALRDRGELKAGETLVVLGAAGGVGLAAVELGKILGARVIACASSPDKIA 849111
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
A S G AD+ IDY L +G D VYD VG
Sbjct: 849112 FARSHG-ADIGIDYTTENLKLRLKELTGGEGADVVYDPVG 849228
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 43/154 (27%), Positives = 65/154 (42%), Gaps = 23/154 (14%)
Frame = +2
Query: 34 GSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYP--CGPGSTVVVHAAA 91
GS+A F VQA L+ P +T + A TA+ ++ P PG V+V A+
Sbjct: 1114982 GSFAQFCRVQARQLMPRPKHLTWEECACYTLTLATAYRMLFGHAPHDIKPGQFVLVWGAS 1115161
Query: 92 GGTGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVV----------IDYVATPDWP 141
GG G+ Q+A GA VIG+ K +G V+ + V +P++
Sbjct: 1115162 GGLGVFGVQLAAASGAHVIGVISDETKRDYVLQLGARGVINRKDFKCWGQMPKVNSPEYN 1115341
Query: 142 PLVRAAAPKG-----------VDAVYDGVGQATF 164
V+ A G VD V++ G+ TF
Sbjct: 1115342 EWVKEARKFGKAIWDITGKRDVDMVFEHPGEQTF 1115443
Score = 45.8 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 43/130 (33%), Positives = 62/130 (47%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V +VG GV++ G V F + ++++ + +P G T AA
Sbjct: 44675 GFECAGRVARVGAGVTDLKPGDEVVGFA----SNAFSSHVTAPRRVFMPLPAGTTAESAA 44842
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
++ LTA Y + G +V++H AAGG GL Q+AK RGARVI +K
Sbjct: 44843 SIPVAFLTAWYGLVELARLKRGDSVLIHGAAGGVGLAAIQIAKARGARVIATVSTPDKRA 45022
Query: 121 LATSVGRADV 130
L G +V
Sbjct: 45023 LVELFGAQEV 45052
Score = 44.3 bits (103), Expect = 0.014, Method: Composition-based stats.
Identities = 59/162 (36%), Positives = 81/162 (50%), Gaps = 2/162 (1%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRV-AYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQA 59
G E AG VV VG V++ G+ V A GG G+YA F V + +P + A
Sbjct: 1471007 GLEVAGEVVAVGHEVTDIEPGEPVMAIVGG----GAYAEFARVDRGLAVRIPPALDFTGA 1471174
Query: 60 AAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKA 119
AAV+ +TA G +TV+VHAAAGG G ++A GARV A++
Sbjct: 1471175 AAVMESFVTAWEAAVHLGGTGAVTTVLVHAAAGGVGSAGVEIAHSLGARVFAT-ANAQRR 1471351
Query: 120 MLATSVGRADVVIDYVATPDWPPLVRAAAP-KGVDAVYDGVG 160
++G A+ V DY + D+ VRAA +GVD + D VG
Sbjct: 1471352 TDILNLG-AECVFDY-RSEDFEQGVRAATQGQGVDVIIDFVG 1471471
Score = 40.0 bits (92), Expect = 0.28, Method: Composition-based stats.
Identities = 39/127 (30%), Positives = 60/127 (47%)
Frame = -3
Query: 29 GVGCTGSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVH 88
G GS+A + V + + +PD + AA VLC G+T + + + PG V +
Sbjct: 368335 GYSVNGSFAEYAVADPNYVGRLPDKLDWGPAAPVLCAGVTVYKGLKET-EVKPGEWVAI- 368162
Query: 89 AAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAA 148
+ GG G + Q AK G V+ I +K LA +G A++V++ A + P V A
Sbjct: 368161 SGIGGLGHMAVQYAKAMGMHVVAIDVHPDKLELAKKLG-AELVVN--AREEDPGAVVQKA 367991
Query: 149 PKGVDAV 155
GV V
Sbjct: 367990 IGGVHGV 367970
>gb|CP000453.1| Alkalilimnicola ehrlichei MLHE-1, complete genome
Length = 3275944
Score = 105 bits (263), Expect = 3e-21, Method: Composition-based stats.
Identities = 75/165 (45%), Positives = 96/165 (58%), Gaps = 1/165 (0%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V VG GV+E +G RV Y G+YA ++ A ++ +PD + D AA
Sbjct: 2810109 GLEAAGVVEAVGDGVTEVAVGDRVVY--ASPPLGAYAEARLMPADRVVRLPDAIDDRTAA 2809936
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
++ QGLTA YL+ +YP G T+++HAAAGG GLLVCQ AK GA VIG G EKA
Sbjct: 2809935 GMMLQGLTAWYLLHRTYPVKAGDTLLIHAAAGGVGLLVCQWAKHLGATVIGTVGSDEKAE 2809756
Query: 121 LATSVGRADVVIDYVATPDWPPLVRA-AAPKGVDAVYDGVGQATF 164
LA + G D I Y +P VR A +GV VYD +G+ TF
Sbjct: 2809755 LARAHG-CDHPIVY-TRERFPDRVREITAGEGVPVVYDSIGKDTF 2809627
Score = 54.3 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 58/189 (30%), Positives = 82/189 (43%), Gaps = 38/189 (20%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAY----------------FGGVGCTGSYAAFTVVQA 44
G + GTVV VG GV E +G+RV + G G G YA +T V +
Sbjct: 2334387 GTDIVGTVVAVGEGVPEARIGERVMVDFSLYNRADDSLADIDYIGHGRDGGYAEYTAVPS 2334208
Query: 45 SALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKL 104
V ++DA+ A C LT ++++ + G V+V A+GG G + Q+ +
Sbjct: 2334207 ENAHVVDTDMSDAELATFCCAYLTGEHMLERAR-VQAGERVLVTGASGGVGSGIIQLCRA 2334031
Query: 105 RGA------------RVIGICGGA----EKAMLATSVGRA------DVVIDYVATPDWPP 142
RGA V GI A E L T+V +A DVV D VA P +
Sbjct: 2334030 RGAIPYAVTSRDKAEAVRGIGAEAVIPRESGDLVTAVDQATEGRPIDVVADLVAGPLFND 2333851
Query: 143 LVRAAAPKG 151
L+R P+G
Sbjct: 2333850 LLRVLRPEG 2333824
>gb|CP000613.1| Rhodospirillum centenum SW, complete genome
Length = 4355548
Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats.
Identities = 71/164 (43%), Positives = 91/164 (55%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V VG GV+ G RV Y G G+YA ++ A L+ +PD + D AA
Sbjct: 2886686 GMEAAGVVEAVGEGVTGFAPGDRVGYCSGP--IGAYAEARLIPAQGLVALPDWLDDRTAA 2886513
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A+L QG+TA YL+ +Y PG ++++HAAAGG GL+VCQ A GA VIG G EKA
Sbjct: 2886512 AMLLQGMTAQYLLRRTYRVNPGDSILIHAAAGGVGLIVCQWANALGATVIGTVGSEEKAE 2886333
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
LA + G I+Y + +GVD VYD VG TF
Sbjct: 2886332 LARAHG-CHHAINYTREDFVARVKEITGGRGVDVVYDSVGADTF 2886204
Score = 71.6 bits (174), Expect = 7e-11, Method: Composition-based stats.
Identities = 61/164 (37%), Positives = 81/164 (49%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V +VG GV G RV + G++ TV A+ ++ +P+ + A+ A
Sbjct: 2821131 GFECAGLVTEVGEGVGHLRPGMRVI---ALSQQGAFCTETVADAAGVIPLPEEMGFAEGA 2821301
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A T+H + G T++V AAGG GL ++ K GARVI EK
Sbjct: 2821302 AFPVAYGTSHIGLVDRGQLKAGETLLVLGAAGGVGLTAVEIGKALGARVIAAASSPEKLA 2821481
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
+A + G AD IDY A D V+ APKGVD VYD VG F
Sbjct: 2821482 IARAHG-ADETIDYAAE-DLRARVKELAPKGVDVVYDPVGGDAF 2821607
Score = 55.8 bits (133), Expect = 4e-06, Method: Composition-based stats.
Identities = 55/160 (34%), Positives = 68/160 (42%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AGTV VG GVS G + + G YAA+ V A L +P G++ +AA
Sbjct: 1914867 GLEVAGTVAAVGEGVSGWREGDALC---ALVAGGGYAAYCVAPAPQCLPIPRGLSAVEAA 1914697
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
V T V P +++VH G G Q+AK GARV G KA
Sbjct: 1914696 GVPETFFTVWSNVFERGALKPTESLLVHGGTSGIGTTAIQLAKAFGARVFATAGSPAKAR 1914517
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
+G AD IDY A + GVD V D VG
Sbjct: 1914516 ACEELG-ADRGIDYKAEDFVVVVKELTGGTGVDVVLDMVG 1914400
Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 42/97 (43%), Positives = 56/97 (57%), Gaps = 2/97 (2%)
Frame = +3
Query: 66 GLTAHY-LVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATS 124
GLTA++ L D P PG TVVV AAAG G +V Q A+LRG R +GICG EKA
Sbjct: 3542736 GLTAYFGLYDIGRP-QPGETVVVTAAAGAVGSMVGQFARLRGCRAVGICGSDEKARWLVE 3542912
Query: 125 VGRADVVIDYVATP-DWPPLVRAAAPKGVDAVYDGVG 160
D ++Y + P + ++AA P G+D ++ VG
Sbjct: 3542913 ELGFDAALNYRSGPAELRRGLKAACPSGIDVYFENVG 3543023
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 35/61 (57%)
Frame = +2
Query: 100 QMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGV 159
Q+A++RG R +GI GG +K T D +DY A PD+ ++ A P G+D +D V
Sbjct: 586415 QIARIRGCRAVGIAGGKDKCDYVTGTLGFDACVDYKA-PDFMQRLKEACPSGIDVYFDNV 586591
Query: 160 G 160
G
Sbjct: 586592 G 586594
>ref|XM_001211305.1| Aspergillus terreus NIH2624 hypothetical protein (ATEG_02127)
partial mRNA
Length = 999
Score = 105 bits (262), Expect = 4e-21, Method: Composition-based stats.
Identities = 72/169 (42%), Positives = 94/169 (55%), Gaps = 5/169 (2%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVS--ETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQ 58
G E AGTVV +GPG + +G RVA+ G TG YA +T V A+ +++P GV+D
Sbjct: 199 GREAAGTVVALGPGPNPYNFQVGDRVAWLG----TGGYAEYTAVPAAKTVKIPAGVSDED 366
Query: 59 AAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEK 118
A GLT +Y G V++HAAAGG G L+ Q+ K GA+VIG GG EK
Sbjct: 367 VMASFLSGLTVLSFAKETYAVQKGDWVLLHAAAGGAGFLMTQILKSMGAKVIGTAGGPEK 546
Query: 119 AMLATSVGRADVVIDYVAT--PDWPPLVRA-AAPKGVDAVYDGVGQATF 164
L +G AD VIDY + DW V+ +GVD VYD VG+ T+
Sbjct: 547 VALVKGLG-ADHVIDYRSEEGKDWVSKVKEITGGRGVDVVYDSVGKDTW 690
>gb|EU686638.1| Uncultured bacterium KM3-47-B8 genomic sequence
Length = 37280
Score = 105 bits (262), Expect = 4e-21, Method: Composition-based stats.
Identities = 73/164 (44%), Positives = 90/164 (54%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G EGAG V G GV++ +G RV Y +G SY VV A L+ +PDG+TD QAA
Sbjct: 16044 GNEGAGVVESTGAGVTDVSVGDRVVYCMSLG---SYTQRRVVAAKQLVRIPDGITDEQAA 15874
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
AV+ +G T YL+ +YP G TV+ HAAAGG GL+ CQ K G VIG G +EKA
Sbjct: 15873 AVMLKGCTVQYLIRRTYPVKEGETVLFHAAAGGCGLIACQWLKHLGVTVIGTVGSSEKAE 15694
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
LA + G D I Y + GV VYD VG+ TF
Sbjct: 15693 LAKAHG-CDYPIVYTDEDVAGRVREITDGAGVPVVYDSVGKDTF 15565
>gb|EU686603.1| Uncultured bacterium AD55-D2 genomic sequence
Length = 37615
Score = 105 bits (262), Expect = 4e-21, Method: Composition-based stats.
Identities = 73/164 (44%), Positives = 90/164 (54%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G EGAG V G GV++ +G RV Y +G SY VV A L+ +PDG+TD QAA
Sbjct: 7493 GNEGAGVVESTGAGVTDVSVGDRVVYCMSLG---SYTQRRVVAAKQLVRIPDGITDEQAA 7323
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
AV+ +G T YL+ +YP G TV+ HAAAGG GL+ CQ K G VIG G +EKA
Sbjct: 7322 AVMLKGCTVQYLIRRTYPVKEGETVLFHAAAGGCGLIACQWLKHLGVTVIGTVGSSEKAE 7143
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
LA + G D I Y + GV VYD VG+ TF
Sbjct: 7142 LAKAHG-CDYPIVYTDEDVAGRVREITDGAGVPVVYDSVGKDTF 7014
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
Length = 6021225
Score = 105 bits (262), Expect = 5e-21, Method: Composition-based stats.
Identities = 78/165 (47%), Positives = 95/165 (57%), Gaps = 1/165 (0%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G EG G V VG GV+E +G RVA+ GSYA V A + VPDGV+ AA
Sbjct: 3778809 GAEGTGVVTAVGDGVTEFAVGDRVAW---AAAPGSYAEQVAVPADVAIPVPDGVSAPIAA 3778979
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+VL QG+TAHYL++S Y PG TV+VHA AGG GL++ Q+A RG RVI EK
Sbjct: 3778980 SVLLQGMTAHYLIESVYRPEPGETVLVHAGAGGVGLILTQLAVARGVRVITTVSSDEKEA 3779159
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPK-GVDAVYDGVGQATF 164
L+ G A+V+ D VRA GV AVYDGVG+ TF
Sbjct: 3779160 LSREAGAAEVL---RYGDDLAERVRALTDGVGVAAVYDGVGKDTF 3779285
Score = 73.6 bits (179), Expect = 2e-11, Method: Composition-based stats.
Identities = 68/162 (41%), Positives = 87/162 (53%), Gaps = 2/162 (1%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G + AGTVV VG G +LG RV TGSYA + +A A +PDG+ AA
Sbjct: 3841181 GFQAAGTVVAVGAGADPALLGSRVV--AQTDGTGSYAEYVAARAEAATPIPDGLDTDTAA 3841354
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGA-RVIGICGGAEKA 119
AVL G A L+D++ G TV+V A A G G + + AK GA RVI GGA K
Sbjct: 3841355 AVLMPGSVATALLDTAALTG-SETVLVQAGATGIGAHLVRHAKAGGAARVIATAGGAAKL 3841531
Query: 120 MLATSVGRADVVIDYVATPDWPPLVRAAAP-KGVDAVYDGVG 160
A +G AD VID+ PDWP +R+A +D V+D +G
Sbjct: 3841532 ARAADLG-ADTVIDH-NEPDWPERLRSALDGTTLDVVFDAIG 3841651
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 64/157 (40%), Positives = 80/157 (50%), Gaps = 7/157 (4%)
Frame = +1
Query: 13 PGVSETMLGKRV------AYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAAAVLCQG 66
PGV LG RV + GG TG YA +V LL VP G+ +A A++ G
Sbjct: 4272982 PGVDTAWLGARVVGPTAASGIGGGVPTGGYAERALVTEQTLLAVPAGLDIDRAVALVHDG 4273161
Query: 67 LTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSVG 126
TA D + PG V+V AAAGG G L+ Q+A GA+V+ GA K LA +G
Sbjct: 4273162 RTALAAFDRA-TVQPGDLVLVTAAAGGLGTLLTQLAHRAGAKVVAAARGAAKLELAHRLG 4273338
Query: 127 RADVVIDYVATPDWPPLVRAA-APKGVDAVYDGVGQA 162
A + IDY + PDW RAA G V+DGVG A
Sbjct: 4273339 -AHLSIDY-SEPDWAEHARAATGGSGFHVVFDGVGGA 4273443
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 48/160 (30%), Positives = 76/160 (47%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G + G V VG V ++G+RVA +G + + ++ A+ L+ VP+ + A A
Sbjct: 5659904 GYDLVGIVTAVGQDVDAALVGRRVAALTKIG---GWTSAALLDAADLVPVPEPLDAAAAE 5659734
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+ G+TA ++ + G T++VH A GG G + Q+A+ G VIG +
Sbjct: 5659733 TFVVNGITAWQMLFRTAKVRAGQTILVHGANGGVGSTLVQLARAHGIHVIGTASARHRRA 5659554
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
+ IDY D VR AP GV+AV+D +G
Sbjct: 5659553 VEE---LGATWIDY--RTDVARQVRELAPGGVNAVFDHIG 5659449
Score = 59.7 bits (143), Expect = 3e-07, Method: Composition-based stats.
Identities = 46/130 (35%), Positives = 64/130 (49%), Gaps = 2/130 (1%)
Frame = -2
Query: 37 AAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGL 96
A V A + ++PD ++ A +L LT H+ + + PG TV+VH AAGG G
Sbjct: 5383379 AEVAVTPAEMVFKLPDNISMEAGAGILFNDLTVHFCLRNRGRLAPGETVLVHGAAGGIGT 5383200
Query: 97 LVCQMAKLRGA-RVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRA-AAPKGVDA 154
+MA GA RV+ + EKA +A + G DVV+ T W V+ +GVD
Sbjct: 5383199 STLRMAAALGASRVVAVVSTPEKAEVAKANGATDVVL----TEGWLAAVKELTGGRGVDI 5383032
Query: 155 VYDGVGQATF 164
V D VG F
Sbjct: 5383031 VLDPVGGDRF 5383002
Score = 57.8 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 58/166 (34%), Positives = 80/166 (48%), Gaps = 4/166 (2%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E +G V +VG GV E +G RV + G YA VV A+ +L VP+G+ A AA
Sbjct: 234329 GLECSGVVAEVGEGVREWQVGDRVC---ALLSGGGYAERVVVPATQVLPVPEGMDLAAAA 234159
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+ T + + G V++H G G Q+A+ RGARV G AEK
Sbjct: 234158 GLPEVAATVWSNLVMTAGLHAGQLVLIHGGGSGIGTHAIQVARQRGARVAVTAGSAEKLE 233979
Query: 121 LATSVGRADVVIDYVATPDWPPLVRA----AAPKGVDAVYDGVGQA 162
+G ADV+I+Y D+ +VRA A G D + D +G A
Sbjct: 233978 RCRELG-ADVLINY-REQDFVEVVRAQESGAGAAGADIILDNMGAA 233847
Score = 51.6 bits (122), Expect = 9e-05, Method: Composition-based stats.
Identities = 42/126 (33%), Positives = 63/126 (50%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G EG GTVV+VG V +G VA + G + +V A++ +P+G
Sbjct: 3207777 GMEGVGTVVRVGADVESVGIGDTVA----IAAKGMMRRYHLVDQYAVIPLPEGAEPGLCT 3207610
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+ G + L+D + PG TV++H AAGG G Q+A+ GAR+IG G AE+
Sbjct: 3207609 STTAFGTAEYSLLDLAR-LQPGETVLIHGAAGGVGQAAIQVARQVGARIIGTAGSAERRA 3207433
Query: 121 LATSVG 126
++G
Sbjct: 3207432 HVLALG 3207415
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 58/191 (30%), Positives = 80/191 (41%), Gaps = 31/191 (16%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFG-----------------------------GVG 31
G EGAGT+ +G GV +G VA +G G+G
Sbjct: 3722733 GHEGAGTIAALGDGVRGFAVGDSVAVYGPWGCGTCHPCEGGRENYCVRAGELGIFPPGLG 3722912
Query: 32 CTGSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYP-CGPGSTVVVHAA 90
G+ A + +V LE DG+ + + GLT ++ + S P PGST VV
Sbjct: 3722913 APGAIAEYMIVDDVRHLESLDGLDPVRTVPLTDAGLTPYHAIKRSLPKLVPGSTAVV-IG 3723089
Query: 91 AGGTGLLVCQMAK-LRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAP 149
AGG G + Q+ + L ARVI + G EK LA VG + V D +
Sbjct: 3723090 AGGLGHVAIQLLRALSPARVIALDIGEEKLELARRVGAHETVTSDEHAAD--RVKELTGG 3723263
Query: 150 KGVDAVYDGVG 160
+G AV+D VG
Sbjct: 3723264 RGATAVFDFVG 3723296
Score = 43.9 bits (102), Expect = 0.018, Method: Composition-based stats.
Identities = 54/144 (37%), Positives = 70/144 (48%), Gaps = 3/144 (2%)
Frame = +1
Query: 20 LGKRVAYFGGVGCTGSYAAFTVVQASALLEV-PDGVTDAQAAAVL-CQGLTAHYLVDSSY 77
+G V +F G + + V+ A+A+ V PD Q L GLTA+ +
Sbjct: 5567809 VGTTVTHFAG------WRDYAVLDATAVTPVDPDLAPPWQYLGALGTTGLTAYAALTDVA 5567970
Query: 78 PCGPGSTVVVHAAAGGTGLLVCQMAKLRGA-RVIGICGGAEKAMLATSVGRADVVIDYVA 136
P PG TV V AAAG G + Q+AKL GA RVIG GG K L D +D+ A
Sbjct: 5567971 PVRPGDTVFVSAAAGAVGSVAGQLAKLLGAGRVIGAAGGPAKTALLREEFGFDAALDHRA 5568150
Query: 137 TPDWPPLVRAAAPKGVDAVYDGVG 160
D + AAAP+G+D D VG
Sbjct: 5568151 G-DLAGQLAAAAPEGIDVYLDSVG 5568219
Score = 42.7 bits (99), Expect = 0.034, Method: Composition-based stats.
Identities = 46/121 (38%), Positives = 62/121 (51%), Gaps = 3/121 (2%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVA--YFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQ 58
G + AGTV+ GPGV + G RVA G G+YA VV A+ L VPDG+ A
Sbjct: 3530067 GWDFAGTVLAAGPGV-DLAAGTRVAGVVLGFDRDFGTYAEQLVVPAADLAVVPDGLDLAA 3529891
Query: 59 AAAVLCQGLTAHYLVD-SSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAE 117
A+ V GL A +VD G+ ++V AAG G V +A RG +V G+ A+
Sbjct: 3529890 ASTVPLNGLGAAQIVDLLGDAPADGNRLLVTGAAGAIGANVAALAPDRGWQVTGLARAAD 3529711
Query: 118 K 118
+
Sbjct: 3529710 E 3529708
Score = 41.2 bits (95), Expect = 0.10, Method: Composition-based stats.
Identities = 49/155 (31%), Positives = 66/155 (42%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G EG GTVV+VG GV +G V+ +GC + A + +
Sbjct: 4484632 GMEGIGTVVRVGAGVDHVAVGDTVS----LGCKDMIRRYNTADADLISRLDPDTEPGHCT 4484465
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
G TA Y + G TV+VH AAGG G Q+AKL GA VIG E+
Sbjct: 4484464 NSTAFG-TAEYALLELARVRAGETVLVHGAAGGVGSAAVQIAKLHGAVVIGTASTDERRA 4484288
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAV 155
+ G AD V+D + ++ +GVD V
Sbjct: 4484287 YVRTQG-ADHVLDSRSLNFAEDVLALTDGRGVDVV 4484186
Score = 36.2 bits (82), Expect = 3.6, Method: Composition-based stats.
Identities = 47/137 (34%), Positives = 61/137 (44%), Gaps = 7/137 (5%)
Frame = -2
Query: 31 GCTGSYAAFTVVQASAL--LEVPDGVTDAQAAAV---LCQGLTAHYLVDSSYPCGPGSTV 85
G GS+A + V + VP+G+TD QA V + GL D PG TV
Sbjct: 4258829 GYQGSHAEYVRVPFGDVNSFVVPEGITDEQALFVSDAVPTGLMGADFCD----IAPGDTV 4258662
Query: 86 VVHAAAGGTGLLVCQMAKLRGA-RVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLV 144
V +GG GL+ A+L GA RV+ I E+ LA A+ IDY A +
Sbjct: 4258661 AVW-GSGGVGLMAGHTARLLGAGRVVVIDRIPERLALARKHFDAE-TIDYTAVDSVQEAL 4258488
Query: 145 RA-AAPKGVDAVYDGVG 160
R +G DA D VG
Sbjct: 4258487 REMTGGRGPDACIDAVG 4258437
>gb|CP000527.1| Desulfovibrio vulgaris subsp. vulgaris DP4, complete genome
Length = 3462887
Score = 105 bits (262), Expect = 5e-21, Method: Composition-based stats.
Identities = 72/164 (43%), Positives = 94/164 (57%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G EGAG V+ VG GV++ G+RVAY G G+YA + A L+ +PD + AA
Sbjct: 695622 GMEGAGIVLAVGEGVTDVQPGQRVAYAGRP--IGAYAEERCIPAHRLVPLPDAIPTRMAA 695795
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A++ +G+TA YL+ YP G GST++VHAAAGG G ++ A+ GA VIG G EK
Sbjct: 695796 AMMLRGMTARYLLHGCYPVGQGSTLLVHAAAGGVGSMLVPWARHLGATVIGTAGSPEKRE 695975
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
A + G VIDY + +GVD VYD VGQATF
Sbjct: 695976 KALAAG-CHHVIDYRTGGVSARVRELTDRRGVDVVYDSVGQATF 696104
>ref|XM_652670.1| Aspergillus nidulans FGSC A4 hypothetical protein AN0158.2 partial
mRNA
Length = 999
Score = 105 bits (261), Expect = 6e-21, Method: Composition-based stats.
Identities = 71/169 (42%), Positives = 93/169 (55%), Gaps = 5/169 (2%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVS--ETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQ 58
G E G VV VGPG + +G RVA+ TGSYA +T V + ++VP+G+++
Sbjct: 199 GREAVGEVVAVGPGANPYNFQIGDRVAWLS----TGSYAEYTAVPQAFAVKVPEGISNED 366
Query: 59 AAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEK 118
GLT L +YP G V++HAAAGG G L+ Q+ K GA VIG GG EK
Sbjct: 367 VMGSFLSGLTVLTLAKETYPVQRGDWVLLHAAAGGAGFLMTQVLKSIGAIVIGTAGGPEK 546
Query: 119 AMLATSVGRADVVIDYVAT--PDWPPLVRAAAP-KGVDAVYDGVGQATF 164
L S+G AD VIDY + DW V+ +GVD VYD VG+ T+
Sbjct: 547 VELVKSLG-ADYVIDYRSEEGKDWVKKVKEITNGRGVDVVYDSVGKDTW 690
>ref|XM_001274439.1| Aspergillus clavatus NRRL 1 quinone oxidoreductase, putative
(ACLA_014510), partial mRNA
Length = 999
Score = 105 bits (261), Expect = 6e-21, Method: Composition-based stats.
Identities = 71/169 (42%), Positives = 94/169 (55%), Gaps = 5/169 (2%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVS--ETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQ 58
G EGAG +V +GPG + +G RVA+ T YA +T V A+ +++PDG++D
Sbjct: 199 GREGAGAIVALGPGPNPYNFQVGDRVAWLS----TSGYAQYTAVPAAKAVKIPDGISDED 366
Query: 59 AAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEK 118
A GLT LV +Y G V+VHAAAGG G L+ Q+ K GA VIG GG EK
Sbjct: 367 VMASFLSGLTVLSLVKETYAVQKGDWVLVHAAAGGAGFLMTQVLKSIGAHVIGTAGGPEK 546
Query: 119 AMLATSVGRADVVIDYVAT--PDWPPLVRA-AAPKGVDAVYDGVGQATF 164
L +G AD VIDY + +W V+ +GVD VYD VG+ T+
Sbjct: 547 VALVKGLG-ADHVIDYRSEEGKNWVEKVKEITGGRGVDVVYDSVGKDTW 690
>gb|CP001043.1| Burkholderia phymatum STM815 chromosome 1, complete sequence
Length = 3479187
Score = 104 bits (260), Expect = 8e-21, Method: Composition-based stats.
Identities = 70/164 (42%), Positives = 95/164 (57%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG VV VGP V++ +G+RVAY G+YA V+ A+ ++++PD + +AA
Sbjct: 2312973 GMEAAGEVVAVGPDVTDVKVGERVAYVARP--PGAYAQERVLPAAQVVKLPDAIGYEEAA 2312800
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+V+ QGLTA YL+ +YP G T+++ AAAGG GLLVCQ AK GA VIG EKA
Sbjct: 2312799 SVMLQGLTAQYLLRRTYPVKQGDTILIQAAAGGVGLLVCQWAKALGATVIGTVSSDEKAE 2312620
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
+A + G D I Y + GV VYD +G+ TF
Sbjct: 2312619 IAQAHG-CDYPIVYTRENFTKRVREITNGAGVPVVYDSIGKDTF 2312491
Score = 65.9 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 46/160 (28%), Positives = 82/160 (51%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G + G V ++G GVS G+ +A + +G+YA + + L+ VP G+ A+A
Sbjct: 2649306 GWDLVGVVDRLGSGVSGIESGQIIA---ALPISGAYAQYVCLHERELIPVPAGLDAAEAV 2649136
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+++ +TA+ ++ S PG V++H A+GG G + Q+ +L G + G C +
Sbjct: 2649135 SLVLNYVTAYQMLHRSAKVRPGQRVLIHGASGGVGSALLQLGRLAGLEMYGTCSSRGASA 2648956
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
++ G + IDY + D+ + GVD V+DG+G
Sbjct: 2648955 VSDLGG---IPIDYRQS-DFVDEIHRLTKDGVDVVFDGLG 2648848
Score = 58.9 bits (141), Expect = 5e-07, Method: Composition-based stats.
Identities = 54/157 (34%), Positives = 74/157 (47%), Gaps = 5/157 (3%)
Frame = +3
Query: 9 VKVGPGVSETMLGKRVAYFGG---VGCTGSYAAFTVVQASALLEVPDGVTDAQA--AAVL 63
V +G E + K A+ G VG +G + F L +V D A V
Sbjct: 1166727 VMIGGTAGEVVESKNAAFKPGDKVVGMSG-WQEFGTSDGKGLQKVDDTHVPLSAYLGPVG 1166903
Query: 64 CQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLAT 123
G+TA Y +++ G TVVV AA+G G +V Q+AK GAR +GI GG+EK
Sbjct: 1166904 MPGVTAWYGLNNIIAPKAGETVVVSAASGAVGSVVGQLAKQAGARAVGIAGGSEKCRYVV 1167083
Query: 124 SVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
D +DY A + L +AA P GVD ++ VG
Sbjct: 1167084 ETLGFDACVDYKAGNLYQDL-KAATPDGVDGCFENVG 1167191
Score = 38.5 bits (88), Expect = 0.66, Method: Composition-based stats.
Identities = 39/133 (29%), Positives = 58/133 (43%), Gaps = 6/133 (4%)
Frame = -1
Query: 34 GSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPG-----STVVVH 88
G YA + V L VP G +D +AAA+ T V G G T +V
Sbjct: 2262843 GGYAEYATVPLLQCLPVPKGFSDIEAAALPETFFTVWSNVFDRAMLGKGEGGENETFLVQ 2262664
Query: 89 AAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAA 148
+ G G+ Q+A G RV G EK ++G A+ I+Y T D+ ++++
Sbjct: 2262663 GGSSGIGVTAIQIAHALGFRVFATAGTDEKCRACEAIG-AERAINY-KTEDFVEVIKSLT 2262490
Query: 149 -PKGVDAVYDGVG 160
+GVD + D V
Sbjct: 2262489 NDRGVDVILDMVA 2262451
Score = 38.1 bits (87), Expect = 1.1, Method: Composition-based stats.
Identities = 58/162 (35%), Positives = 75/162 (46%), Gaps = 2/162 (1%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V VG GV++ G RV + G +A V A A + + D AA
Sbjct: 1070996 GAEVAGIVRAVGDGVTQFKPGMRVVAYTQ---QGGFAEQAVADAGACVPLADDADLEAAA 1070826
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+ T+H+ V G T++V AAGG GL ++ K GARVI EK
Sbjct: 1070825 VLTLAYGTSHHAVVDRAALKAGETMLVLGAAGGVGLAAVEIGKALGARVIAAASSDEK-- 1070652
Query: 121 LATSVGR-ADVVIDYVATPDWPPLVRAAAP-KGVDAVYDGVG 160
LAT V AD I+Y AT D ++A G D +YD VG
Sbjct: 1070651 LATCVAHGADATINY-ATEDLRERIKALTDGNGPDVIYDPVG 1070529
>emb|CU914168.1| Ralstonia solanacearum strain IPO1609 Genome Draft
Length = 3372855
Score = 104 bits (260), Expect = 8e-21, Method: Composition-based stats.
Identities = 73/165 (44%), Positives = 88/165 (53%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V VG GV+ G RVAY G TG+YA + A L+ +PD + A
Sbjct: 2143172 GMEAAGVVEAVGEGVAHVKPGDRVAYAGRP--TGAYAEVRTMPADILVRLPDAIDFETGA 2142999
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A++ QGLT YL+ SY PG TV+ HAAAGG GL+ CQ K GA VIG G KA
Sbjct: 2142998 AMMLQGLTTQYLLRDSYRVQPGDTVLFHAAAGGVGLIACQWLKALGATVIGTVGSDAKAE 2142819
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATFA 165
LA + G D I Y + KGV VYDG+G+ TFA
Sbjct: 2142818 LARAHG-CDHTIVYTRENFTERVREITGGKGVPVVYDGIGKDTFA 2142687
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 38/98 (38%), Positives = 53/98 (54%), Gaps = 3/98 (3%)
Frame = -1
Query: 66 GLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSV 125
G+TA Y ++ PG TV V AA+G G +V Q+AKL+G R +G GG +K +
Sbjct: 1414839 GVTAWYGLNRIMHAKPGQTVAVSAASGAVGSVVGQLAKLKGCRAVGFAGGKDKCDYVVNE 1414660
Query: 126 GRADVVIDYVATPDWPPL---VRAAAPKGVDAVYDGVG 160
D IDY A D L ++ A P G+DA ++ VG
Sbjct: 1414659 LGFDACIDYKAAKDPKDLYAMLKEATPDGIDAYFENVG 1414546
Score = 51.6 bits (122), Expect = 8e-05, Method: Composition-based stats.
Identities = 47/137 (34%), Positives = 61/137 (44%), Gaps = 5/137 (3%)
Frame = +1
Query: 34 GSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGS-----TVVVH 88
G YA F +L VP G++D +AAA+ T V G G+ T++V
Sbjct: 979240 GGYAEFCTAPLGQVLPVPAGLSDIEAAALPENYFTVWSNVFDRGQLGQGAHGRDETLLVQ 979419
Query: 89 AAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAA 148
+ G G QMA G RV G AEK +G A I Y T D+ +V+A
Sbjct: 979420 GGSSGIGTTAIQMASALGYRVFSTAGSAEKCTACVELG-ASRAIQY-KTEDFAEIVKAET 979593
Query: 149 PKGVDAVYDGVGQATFA 165
+GVD V D VG A A
Sbjct: 979594 GRGVDVVLDMVGGAYVA 979644
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 59/162 (36%), Positives = 80/162 (49%), Gaps = 2/162 (1%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVT-DAQA 59
G E AG V VG GV+ G V F G G++A+ A A++ +P G+ D A
Sbjct: 1779318 GSEVAGVVRAVGDGVAHVKAGDHVIAFLG---QGAFASQVKAPAKAVMPMPPGMAFDTAA 1779488
Query: 60 AAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKA 119
A L G + H +VD G T++V AAGG GL ++ K GARVI EK
Sbjct: 1779489 AFTLTYGTSHHAVVDRG-QLKAGETMLVLGAAGGVGLAAIEIGKAIGARVIAAASSDEKL 1779665
Query: 120 MLATSVGRADVVIDYVATPDWPPLVRAAAP-KGVDAVYDGVG 160
+ + G AD +I+Y AT D ++ KG D +YD VG
Sbjct: 1779666 AVCQAHG-ADALINY-ATEDLRERIKTLTDGKGPDVIYDPVG 1779785
>gb|CP001195.1| Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG203, complete
sequence
Length = 308747
Score = 104 bits (260), Expect = 8e-21, Method: Composition-based stats.
Identities = 70/165 (42%), Positives = 98/165 (59%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G EGAG V VG GV + +G RV Y +G G+YA + A+ LL++P+ ++ AA
Sbjct: 107373 GLEGAGIVAAVGDGVEDVSVGDRVGY--ALGPLGAYADARLYPANRLLKLPEDLSSHDAA 107200
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
++L +GLTA YL+ S++P GPG TV+++ AAGG G ++ A GA+VIG+
Sbjct: 107199 SLLLKGLTAQYLLTSTFPVGPGVTVLLYGAAGGLGAVMAPWAARLGAKVIGVVSRESSIE 107020
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATFA 165
A G +DVVI PD + R +GVD VYDGVG+ TFA
Sbjct: 107019 RAKVGGCSDVVIWSNDLPD--EIARITQKRGVDVVYDGVGKTTFA 106891
Score = 72.4 bits (176), Expect = 4e-11, Method: Composition-based stats.
Identities = 58/164 (35%), Positives = 81/164 (49%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG + VG GV+ T +G RVA + G A F+VV ++ +P+ + AA
Sbjct: 61404 GGEIAGVIDAVGAGVTSTAVGSRVATWQ---LGGGLAEFSVVSEDDVVAIPEELDFNAAA 61234
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A++ TAHY + G TV+V AAGG G + Q+A+ GARVI K
Sbjct: 61233 AMIVDYQTAHYALFERGGLKEGETVLVSGAAGGVGSVAIQLARRAGARVIAAVSSEAKRE 61054
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
A ++G V PD ++A AP G+D V D VG + F
Sbjct: 61053 RALTLGAHATVTS--MGPDIRSEIKALAPLGLDMVLDPVGGSIF 60928
Score = 69.7 bits (169), Expect = 3e-10, Method: Composition-based stats.
Identities = 53/158 (33%), Positives = 81/158 (51%), Gaps = 4/158 (2%)
Frame = +3
Query: 11 VGPGVSETMLGKRVAYFGGVGCTG--SYAAFTVVQASALLEV-PDGVTDAQAAAVL-CQG 66
+G VSE + A+ G G + +++ S L ++ P+ + A VL G
Sbjct: 122364 IGSTVSEVVESDNPAFVKGDIVCGFAGWQDYSLSDGSELQKLDPESAPVSTALGVLGFTG 122543
Query: 67 LTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSVG 126
+TA+ + + PG TVVV AA G G + Q+AKL+GARV+GI GG EK +
Sbjct: 122544 MTAYVGLTTIGVPKPGETVVVSAATGAVGSIAVQIAKLKGARVVGIAGGKEKTDYLVNEL 122723
Query: 127 RADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
AD +D+ A PD+ ++ A P G+D ++ VG F
Sbjct: 122724 GADAAVDHRA-PDFADQLKKAVPNGIDVDFESVGGKVF 122834
Score = 51.6 bits (122), Expect = 7e-05, Method: Composition-based stats.
Identities = 45/139 (32%), Positives = 64/139 (46%), Gaps = 18/139 (12%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRV------------------AYFGGVGCTGSYAAFTVV 42
G GT+ VG GV + +G+RV AY GG G +A +T V
Sbjct: 277524 GAAVVGTIAAVGGGVDASRIGQRVIIDPQVRDLALPERAQLVAYLGGER-DGGFAEYTAV 277348
Query: 43 QASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMA 102
A V ++DA+ A TA ++ + G G TVV+ AAGG G + Q++
Sbjct: 277347 PAENAYVVNSSLSDAELATFPTSYDTAEEMLVRAR-LGNGETVVITGAAGGVGTALVQLS 277171
Query: 103 KLRGARVIGICGGAEKAML 121
+RGA VI I G A++ L
Sbjct: 277170 LIRGATVIAIAGAAKEERL 277114
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 41/131 (31%), Positives = 61/131 (46%), Gaps = 17/131 (12%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRV-----------------AYFGGVGCTGSYAAFTVVQ 43
G AGT+V +GP VS+ +G RV + + G G +A + VV
Sbjct: 228381 GAAIAGTIVAIGPSVSDRQVGNRVLVDPCIRDLSLPRRAQLSQYIGKDVNGGFAEYAVVP 228202
Query: 44 ASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAK 103
A + ++DA+ A TA ++ + G TVV+ AAGG G + Q++
Sbjct: 228201 AINAHVLETSLSDAELATFPTSYDTAEEMLVRAR-LSEGETVVITGAAGGVGSALIQLSL 228025
Query: 104 LRGARVIGICG 114
+RGARVI I G
Sbjct: 228024 IRGARVIAIAG 227992
>gb|AE008918.1| Brucella melitensis 16M chromosome II, complete sequence
Length = 1177787
Score = 104 bits (260), Expect = 9e-21, Method: Composition-based stats.
Identities = 70/164 (42%), Positives = 94/164 (57%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G EGAG VV VG GV +G+RVAY GSYA ++ A L++VPD + AA
Sbjct: 739625 GNEGAGIVVAVGAGVENVRVGERVAY---AATPGSYADERILPADRLVKVPDTIDLKTAA 739795
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+++ +G+TA YL+ ++ PG T++ HAAAGG GL+ Q AK GA VIG G EK
Sbjct: 739796 SMMLKGMTAQYLLRRTFRVEPGQTILFHAAAGGVGLIAGQWAKHLGATVIGTAGSEEKIA 739975
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
LA G D VI+Y + + +GVD VYD VG+ T+
Sbjct: 739976 LARKHGY-DHVINYRSENFVERVRELTNGEGVDVVYDSVGRDTY 740104
Score = 48.1 bits (113), Expect = 8e-04, Method: Composition-based stats.
Identities = 47/161 (29%), Positives = 76/161 (47%), Gaps = 1/161 (0%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E +G V+++ V+ G R+ + G+Y+ +VQA + VP G++ +AA
Sbjct: 917034 GLELSGVVLEIAEDVTRFGPGDRIM---ALVAGGAYSEEAIVQADVCIPVPAGLSMVEAA 916864
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+ T + PG TV++H G G+ +AK GAR+I CG +K
Sbjct: 916863 GIPETYFTVWSNLFQRAGLQPGETVLLHGGTSGIGVTATLLAKAIGARMITTCGSDDKCR 916684
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAP-KGVDAVYDGVG 160
+ ++G A I+Y T D+ RA +G + V D VG
Sbjct: 916683 ASEALG-AIASINY-RTTDFVEAGRALTEGRGPEVVIDMVG 916567
>gb|CP000888.1| Brucella abortus S19 chromosome 2, complete sequence
Length = 1161449
Score = 104 bits (260), Expect = 9e-21, Method: Composition-based stats.
Identities = 70/164 (42%), Positives = 94/164 (57%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G EGAG VV VG GV +G+RVAY GSYA ++ A L++VPD + AA
Sbjct: 665932 GNEGAGIVVAVGAGVENVRVGERVAY---AATPGSYADERILPADRLVKVPDTIDLKTAA 666102
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+++ +G+TA YL+ ++ PG T++ HAAAGG GL+ Q AK GA VIG G EK
Sbjct: 666103 SMMLKGMTAQYLLRRTFRVEPGQTILFHAAAGGVGLIAGQWAKHLGATVIGTAGSEEKIA 666282
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
LA G D VI+Y + + +GVD VYD VG+ T+
Sbjct: 666283 LARKHGY-DHVINYRSENFVERVRELTNGEGVDVVYDSVGRDTY 666411
Score = 48.1 bits (113), Expect = 8e-04, Method: Composition-based stats.
Identities = 47/161 (29%), Positives = 76/161 (47%), Gaps = 1/161 (0%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E +G V+++ V+ G R+ + G+Y+ +VQA + VP G++ +AA
Sbjct: 817245 GLELSGVVLEIAEDVTRFGPGDRIM---ALVAGGAYSEEAIVQADVCIPVPAGLSMVEAA 817075
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+ T + PG TV++H G G+ +AK GAR+I CG +K
Sbjct: 817074 GIPETYFTVWSNLFQRAGLQPGETVLLHGGTSGIGVTATLLAKAIGARMITTCGSDDKCR 816895
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAP-KGVDAVYDGVG 160
+ ++G A I+Y T D+ RA +G + V D VG
Sbjct: 816894 ASEALG-AIASINY-RTTDFVEAGRALTEGRGPEVVIDMVG 816778
>gb|AE017224.1| Brucella abortus biovar 1 str. 9-941 chromosome II, complete sequence
Length = 1162204
Score = 104 bits (260), Expect = 9e-21, Method: Composition-based stats.
Identities = 70/164 (42%), Positives = 94/164 (57%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G EGAG VV VG GV +G+RVAY GSYA ++ A L++VPD + AA
Sbjct: 666729 GNEGAGIVVAVGAGVENVRVGERVAY---AATPGSYADERILPADRLVKVPDTIDLKTAA 666899
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+++ +G+TA YL+ ++ PG T++ HAAAGG GL+ Q AK GA VIG G EK
Sbjct: 666900 SMMLKGMTAQYLLRRTFRVEPGQTILFHAAAGGVGLIAGQWAKHLGATVIGTAGSEEKIA 667079
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
LA G D VI+Y + + +GVD VYD VG+ T+
Sbjct: 667080 LARKHGY-DHVINYRSENFVERVRELTNGEGVDVVYDSVGRDTY 667208
Score = 48.1 bits (113), Expect = 8e-04, Method: Composition-based stats.
Identities = 47/161 (29%), Positives = 76/161 (47%), Gaps = 1/161 (0%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E +G V+++ V+ G R+ + G+Y+ +VQA + VP G++ +AA
Sbjct: 818008 GLELSGVVLEIAEDVTRFGPGDRIM---ALVAGGAYSEEAIVQADVCIPVPAGLSMVEAA 817838
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+ T + PG TV++H G G+ +AK GAR+I CG +K
Sbjct: 817837 GIPETYFTVWSNLFQRAGLQPGETVLLHGGTSGIGVTATLLAKAIGARMITTCGSDDKCR 817658
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAP-KGVDAVYDGVG 160
+ ++G A I+Y T D+ RA +G + V D VG
Sbjct: 817657 ASEALG-AIASINY-RTTDFVEAGRALTEGRGPEVVIDMVG 817541
>emb|AM040265.1| Brucella melitensis biovar Abortus 2308 chromosome II, complete sequence,
strain 2308
Length = 1156948
Score = 104 bits (260), Expect = 9e-21, Method: Composition-based stats.
Identities = 70/164 (42%), Positives = 94/164 (57%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G EGAG VV VG GV +G+RVAY GSYA ++ A L++VPD + AA
Sbjct: 666717 GNEGAGIVVAVGAGVENVRVGERVAY---AATPGSYADERILPADRLVKVPDTIDLKTAA 666887
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+++ +G+TA YL+ ++ PG T++ HAAAGG GL+ Q AK GA VIG G EK
Sbjct: 666888 SMMLKGMTAQYLLRRTFRVEPGQTILFHAAAGGVGLIAGQWAKHLGATVIGTAGSEEKIA 667067
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
LA G D VI+Y + + +GVD VYD VG+ T+
Sbjct: 667068 LARKHGY-DHVINYRSENFVERVRELTNGEGVDVVYDSVGRDTY 667196
Score = 48.1 bits (113), Expect = 8e-04, Method: Composition-based stats.
Identities = 47/161 (29%), Positives = 76/161 (47%), Gaps = 1/161 (0%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E +G V+++ V+ G R+ + G+Y+ +VQA + VP G++ +AA
Sbjct: 817987 GLELSGVVLEIAEDVTRFGPGDRIM---ALVAGGAYSEEAIVQADVCIPVPAGLSMVEAA 817817
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+ T + PG TV++H G G+ +AK GAR+I CG +K
Sbjct: 817816 GIPETYFTVWSNLFQRAGLQPGETVLLHGGTSGIGVTATLLAKAIGARMITTCGSDDKCR 817637
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAP-KGVDAVYDGVG 160
+ ++G A I+Y T D+ RA +G + V D VG
Sbjct: 817636 ASEALG-AIASINY-RTTDFVEAGRALTEGRGPEVVIDMVG 817520
>emb|AM849034.1| Clavibacter michiganensis subsp. sepedonicus complete genome
Length = 3258645
Score = 104 bits (260), Expect = 9e-21, Method: Composition-based stats.
Identities = 75/165 (45%), Positives = 93/165 (56%), Gaps = 1/165 (0%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG + +G GV+ +G RVA +G+YA +++A LL VPDGV AA
Sbjct: 539712 GSEAAGVIEALGDGVAGVHVGDRVA---TAEASGTYAQHALIRAETLLPVPDGVGFETAA 539542
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A+ QGLTAHYL SSYP GPG +VHA AGG GLL+ Q+ RG VI EKA
Sbjct: 539541 ALPLQGLTAHYLATSSYPAGPGDRALVHAGAGGVGLLLTQLLVDRGVEVITTVSTEEKAA 539362
Query: 121 LATSVGRADVVIDYVATPDWPPLVRA-AAPKGVDAVYDGVGQATF 164
L+ + G V + D P VR +GVD VYDGVG+ TF
Sbjct: 539361 LSRAAGATHV----LGYDDVPVRVRELTGGRGVDVVYDGVGRDTF 539239
Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 55/160 (34%), Positives = 72/160 (45%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G + AG + VG GV+ G+ V G ++A VV A ++ P + A
Sbjct: 1393375 GSDFAGCIAAVGEGVTRFKKGQDVL---GHTVMAAHATHVVVPAGNVVAKPAQLPWEVAG 1393545
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+ GL AH ++ + G G T+VV AAAGG G + Q+A RGARVIG CG
Sbjct: 1393546 GLFLAGLVAHDVL-HAITVGEGDTLVVTAAAGGVGSIEAQLAMRRGARVIGTCGERNFDY 1393722
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
L R V V +RAAAP GV D G
Sbjct: 1393723 L-----RQIGVTPVVYGDGLADRIRAAAPNGVQGFVDNFG 1393827
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 50/160 (31%), Positives = 71/160 (44%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E +GTV VG G + +G RV + G YA V +L VPD + QAA
Sbjct: 1892240 GLEVSGTVEAVGQGATRWSVGDRVC---ALLAGGGYAELVAVDERHVLPVPDRLDLVQAA 1892410
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+ T V PG T++VH + G G + Q+A GARV G K
Sbjct: 1892411 GLPEVVATVWSNVVLDARLAPGETLLVHGGSSGIGTMAIQLATRLGARVAVTAGSPAKLD 1892590
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
++G A+++IDY L+ A +G D + D +G
Sbjct: 1892591 ACRALG-AEILIDYREQDFVAALLEATDGRGADVILDAIG 1892707
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 42/113 (37%), Positives = 53/113 (46%), Gaps = 1/113 (0%)
Frame = +1
Query: 49 EVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGA- 107
EVP + A + GLTA+ + G V V AAG G +V Q+A+L GA
Sbjct: 1193641 EVPGVASSAHLGVLGLTGLTAYVGLTRIASIKEGDVVFVSGAAGAVGSMVGQIARLLGAS 1193820
Query: 108 RVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
RV+G G AEK TS D DY D + AAP G+D +D VG
Sbjct: 1193821 RVVGSAGSAEKVERLTSHLGFDAAFDYHGG-DLEAKLAEAAPDGIDLYFDNVG 1193976
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 44/108 (40%), Positives = 54/108 (50%), Gaps = 2/108 (1%)
Frame = +1
Query: 59 AAAVLCQGLTA-HYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGAR-VIGICGGA 116
A VL QG+TA H +VD + G G V V AAGG G L Q+A+ RGA VIG G A
Sbjct: 899908 AEHVLNQGVTAFHGMVDVAR-VGDGDVVFVTGAAGGVGSLAGQIARARGASTVIGSTGSA 900084
Query: 117 EKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
KA D ID+ D +R AP G+D ++D V F
Sbjct: 900085 AKAAWLVDELGFDAAIDH-RREDVLARLRELAPDGIDVLFDTVAGPQF 900225
Score = 43.1 bits (100), Expect = 0.027, Method: Composition-based stats.
Identities = 28/78 (35%), Positives = 39/78 (50%)
Frame = -1
Query: 34 GSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGG 93
GSYA + V + +L P ++ +AAA LTA +V G V++HA AGG
Sbjct: 2778981 GSYAPYIAVPSVSLARKPARLSHVEAAATPVSALTAWGMVVDIGRAHEGQVVLIHAGAGG 2778802
Query: 94 TGLLVCQMAKLRGARVIG 111
G Q A+ GARV+
Sbjct: 2778801 VGHFAVQFARHFGARVVA 2778748
Score = 41.6 bits (96), Expect = 0.078, Method: Composition-based stats.
Identities = 53/167 (31%), Positives = 78/167 (46%), Gaps = 11/167 (6%)
Frame = +3
Query: 2 EEGAGTVVKVGPGVSETMLGKRVAYFGGVGC--TGSYAAFTVVQASALLEVPDGVTDAQA 59
++GAG + VGP V+ +G RV TG+ TV+ + +PDG++
Sbjct: 1362675 QDGAGVIDAVGPDVTGLAVGDRVWIMLAAHGRPTGTAQEKTVLPVDRVAPLPDGLSFDLG 1362854
Query: 60 AAVLCQGLTAHYLVDSSYPCGP---------GSTVVVHAAAGGTGLLVCQMAKLRGARVI 110
A++ +TAH + S GP G V+V AG G Q+A+ GA VI
Sbjct: 1362855 ASLGVPAVTAHRALTVSED-GPSRLAPGALAGKQVLVAGGAGAVGHAAIQLARWAGATVI 1363031
Query: 111 GICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYD 157
EK LAT+ G A V+DY A D +++ AP GVD + +
Sbjct: 1363032 TTVSSPEKGALATAAG-AHHVVDYKAG-DAAAEIQSIAPDGVDLIVE 1363166
>emb|CU695239.1| Ralstonia solanacearum strain MolK2 Genome Draft
Length = 700247
Score = 104 bits (260), Expect = 9e-21, Method: Composition-based stats.
Identities = 73/165 (44%), Positives = 88/165 (53%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V VG GV+ G RVAY G TG+YA + A L+ +PD + A
Sbjct: 215697 GMEAAGVVEAVGEGVAHVKPGDRVAYAGRP--TGAYAEVRTMPADILVRLPDAIDFETGA 215870
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A++ QGLT YL+ SY PG TV+ HAAAGG GL+ CQ K GA VIG G KA
Sbjct: 215871 AMMLQGLTTQYLLRDSYRVQPGDTVLFHAAAGGVGLIACQWLKALGATVIGTVGSDAKAE 216050
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATFA 165
LA + G D I Y + KGV VYDG+G+ TFA
Sbjct: 216051 LARAHG-CDHTIVYTRENFTERVREITGGKGVPVVYDGIGKDTFA 216182
Score = 52.0 bits (123), Expect = 6e-05, Method: Composition-based stats.
Identities = 47/137 (34%), Positives = 62/137 (45%), Gaps = 5/137 (3%)
Frame = +3
Query: 34 GSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGS-----TVVVH 88
G YA F +L VP G++D +AAA+ T V G G+ T++V
Sbjct: 312813 GGYAEFCTAPLGQVLPVPVGLSDIEAAALPENYFTVWSNVFDRGQLGQGAHGRGETLLVQ 312992
Query: 89 AAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAA 148
+ G G QMA + G RV G AEK +G A I Y T D+ +V+A
Sbjct: 312993 GGSSGIGTTAIQMASVLGYRVFATAGSAEKCAACVELG-ASRAIQY-KTEDFAEIVKAET 313166
Query: 149 PKGVDAVYDGVGQATFA 165
+GVD V D VG A A
Sbjct: 313167 GRGVDVVLDMVGGAYVA 313217
Score = 36.2 bits (82), Expect = 3.3, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 53/120 (44%), Gaps = 18/120 (15%)
Frame = -3
Query: 34 GSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGG 93
G Y+ VV+ +L +P G+ A AA +LC G+T + + G GS V V GG
Sbjct: 271590 GGYSDSIVVRDKFVLSIPHGLDPAGAAPLLCAGITTWSPL-HRWKVGQGSKVAV-IGLGG 271417
Query: 94 TGLLVCQMAKLRGARVI------------------GICGGAEKAMLATSVGRADVVIDYV 135
G + ++AK GA V + ++ A + + GR D++ID V
Sbjct: 271416 LGHMALKLAKALGADVTLFTRSTGKEKDAFRLGADHVVLSSDPAQMTATAGRFDLIIDTV 271237
>gb|EU686629.1| Uncultured bacterium KM3-173-A5 genomic sequence
Length = 35487
Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats.
Identities = 72/164 (43%), Positives = 89/164 (54%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G EGAG V VG GVS +G RV Y +G SYA V+ AS L+ VPD +TD QAA
Sbjct: 33663 GNEGAGVVEIVGDGVSHIKVGDRVTYCMSLG---SYAEKRVIDASCLVRVPDSITDQQAA 33833
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A++ +G T YL+ Y G T+++HAAAGG GL+ CQ AK GA VIG G KA
Sbjct: 33834 AMMLKGCTVQYLLRRIYQIQQGDTILLHAAAGGVGLIACQWAKHLGATVIGTVGSDRKAQ 34013
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
LA G D + Y + GV V+D VG+ TF
Sbjct: 34014 LAQEHG-CDHTVIYTRESVVDRVKELTDGVGVPVVFDSVGKDTF 34142
>gb|CP000449.1| Maricaulis maris MCS10, complete genome
Length = 3368780
Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats.
Identities = 70/164 (42%), Positives = 94/164 (57%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E +G V +G VS G RVAY G G G+YA +V A + ++PD V+ QAA
Sbjct: 3251664 GLEASGIVEAMGSEVSGFRTGDRVAY--GSGPLGAYAETNIVPAGRVAKLPDEVSHEQAA 3251837
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A++ +G+TAHYL+ +YP G T++ HAAAGG GLLVCQ A+ G +IG EK
Sbjct: 3251838 AIMLKGMTAHYLLKETYPVQRGETILFHAAAGGVGLLVCQWARDLGVTLIGTASTQEKCD 3252017
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
LA +G A +I+Y + +GV VYDGVG+ TF
Sbjct: 3252018 LALKMG-ATHMINYTTEDVVARVRDITNGQGVPVVYDGVGKDTF 3252146
Score = 67.0 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 56/161 (34%), Positives = 80/161 (49%), Gaps = 1/161 (0%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVT-DAQA 59
G EGAG + ++G GV +G +V + VG ++A VV A A+ +PD + DA A
Sbjct: 1806106 GTEGAGVISELGEGVEGLAVGDKVLFNTPVG---AFAEQAVVPAPAVTPIPDSMPFDAAA 1805936
Query: 60 AAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKA 119
+ G + H L + PG T++V AAGG GL ++ K GA+VI EK
Sbjct: 1805935 GLTIVYGTSYHALKQRA-EIKPGETLLVLGAAGGVGLATVELGKAMGAKVIAAASSDEKL 1805759
Query: 120 MLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
+ S G AD +I+Y + KGVD +YD VG
Sbjct: 1805758 AVCKSHG-ADELINYSTEDLKARIKELTGGKGVDVIYDPVG 1805639
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 42/99 (42%), Positives = 51/99 (51%)
Frame = -2
Query: 66 GLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSV 125
GLTA+ + PG T+ + A AG G Q AK GA VI GGAEK S+
Sbjct: 1077058 GLTAYVGLKRMIDLQPGETLWMSAGAGAVGSSGIQFAKAMGATVIATAGGAEKCAFVKSL 1076879
Query: 126 GRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
G AD V+DY AT D + A AP GVD ++ VG F
Sbjct: 1076878 G-ADHVVDYKATDDLTAAITAVAPDGVDGYFENVGGTHF 1076765
Score = 51.6 bits (122), Expect = 8e-05, Method: Composition-based stats.
Identities = 54/160 (33%), Positives = 73/160 (45%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V +G GV+ G V + G YAA+++ A ++L VP+GV AA
Sbjct: 2789941 GLEVAGHVEALGEGVTGYKAGDPVC---ALVAGGGYAAYSLAPAGSVLPVPEGVPVEDAA 2789771
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+ T V T++VH G G Q+AK GARVI G EK
Sbjct: 2789770 GLPETVFTVWTNVFEIGALSRDETLLVHGGTSGIGSTAIQLAKAAGARVIATAGTPEKVA 2789591
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
+G AD+ I+Y T D+ +V A G D + D VG
Sbjct: 2789590 QCRQLG-ADIAINYRDT-DFETVVTEAG--GADVILDMVG 2789483
Score = 35.8 bits (81), Expect = 5.3, Method: Composition-based stats.
Identities = 32/99 (32%), Positives = 48/99 (48%)
Frame = -2
Query: 34 GSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGG 93
G Y+ V+ S +L +PD + A AA +LC G+T Y + GPG V V G
Sbjct: 2512225 GGYSQKITVKESFVLRIPDTLDRAGAAPLLCAGITT-YSPLRHWKVGPGQRVGVVGLGGL 2512049
Query: 94 TGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVI 132
+ V ++A+ GA V+ K A +G ++VVI
Sbjct: 2512048 GHMAV-KLARAMGAEVVLFTTSPGKVEDAKRLGASEVVI 2511935
Score = 34.7 bits (78), Expect = 9.9, Method: Composition-based stats.
Identities = 52/170 (30%), Positives = 74/170 (43%), Gaps = 8/170 (4%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGG--VGCTGSYAAFTVVQASALLEVPDGVTDAQ 58
G + AGT+ VG GV +G + G G G+ A F + A + P+ ++ +
Sbjct: 2014619 GMDFAGTIEAVGDGVDAFAVGDEIYGCAGGLAGLPGALAEFMLADARLIARKPERLSMRE 2014798
Query: 59 AAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEK 118
AAA+ G+TA + + G TV+VH GG G L Q+A+ GA V GG +
Sbjct: 2014799 AAALPLVGITAMEGLQRA-GTRAGQTVLVHGGTGGVGHLAVQIARHLGATVCATGGGDAQ 2014975
Query: 119 AMLATSVG------RADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQA 162
+ G R + V DYVA G D V+D VG A
Sbjct: 2014976 LDIIKGYGATPINYRTETVADYVAA--------QTGGVGFDVVFDTVGGA 2015101
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence
Length = 4074542
Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats.
Identities = 70/164 (42%), Positives = 92/164 (56%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V ++G GV+ G RVAY G+YA V+ A+ L+++P+ + AA
Sbjct: 1348561 GMEAAGEVTELGEGVTALKPGDRVAYVAQP--PGAYAQERVLAAAKLVKLPEAIGYEDAA 1348734
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+ + QGLTA YL+ +Y PG T+V+HAAAGG GLLVCQ AK GA VIG G EKA
Sbjct: 1348735 SAMLQGLTAQYLLRRTYKVEPGDTIVIHAAAGGVGLLVCQWAKALGATVIGTVGSDEKAA 1348914
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
LA + G D I Y + GV VYD +G+ T+
Sbjct: 1348915 LAKAHG-CDHPIVYTRENFTERVKEITNGAGVPVVYDSIGKDTY 1349043
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 39/99 (39%), Positives = 52/99 (52%)
Frame = +1
Query: 66 GLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSV 125
G+TA Y ++ G T+VV AA+G G +V Q+AKL G R +GI GGA+K
Sbjct: 1667233 GVTAWYGLNRIIRPRAGETLVVSAASGAVGSVVGQLAKLAGCRAVGIAGGADKCRYVVDT 1667412
Query: 126 GRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
D +DY A + AAAP GVD ++ VG A
Sbjct: 1667413 LGFDACVDYKAGRL-ADDLAAAAPDGVDGCFENVGGAVL 1667526
Score = 44.3 bits (103), Expect = 0.014, Method: Composition-based stats.
Identities = 55/181 (30%), Positives = 70/181 (38%), Gaps = 19/181 (10%)
Frame = +3
Query: 3 EGAGTVVKVGPGVSETMLGKRV------------------AYFGGVGCTGSYAAFTVVQA 44
+GAG V +G GV+E G V A G G G V A
Sbjct: 3230136 DGAGVVEAIGEGVTEFAPGDAVVSTFFPYWLDGGPTVADFATVPGDGVDGYARESVVRPA 3230315
Query: 45 SALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKL 104
P G T QAA + GLTA + G +V+V GG + Q AK
Sbjct: 3230316 HWFTHAPQGYTHEQAATLTTAGLTAWRALVVDGGLKAGDSVLV-LGTGGVSIFALQFAKR 3230492
Query: 105 RGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAP-KGVDAVYDGVGQAT 163
GA VI EK A ++G AD V++Y +W V A +GVD V + G T
Sbjct: 3230493 MGATVIATSSSDEKLERARALG-ADHVVNYRRDANWAAKVLALTNGRGVDHVIEVGGPDT 3230669
Query: 164 F 164
Sbjct: 3230670 L 3230672
Score = 38.5 bits (88), Expect = 0.83, Method: Composition-based stats.
Identities = 42/133 (31%), Positives = 61/133 (45%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E +G VV+VG V+E G + F S+A +A A+ P+ ++ +AA
Sbjct: 3331555 GMELSGRVVRVGSAVTEFAPGDAILGFA----PASFATRVRTRAQAIAPKPERLSFEEAA 3331388
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
V TA+Y + G V+VH AGG G+ +A+ GA V G EK
Sbjct: 3331387 TVPTTFFTAYYALVELARLRRGERVLVHGGAGGVGIAAILLARYFGAEVFATAGSDEKRE 3331208
Query: 121 LATSVGRADVVID 133
+G AD V+D
Sbjct: 3331207 FVRLLG-ADHVLD 3331172
>gb|CP000949.1| Pseudomonas putida W619, complete genome
Length = 5774330
Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats.
Identities = 68/164 (41%), Positives = 93/164 (56%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G EGAG V VG GV+ +G RVAY GG G+Y+ + + L+++PD ++ QAA
Sbjct: 99160 GTEGAGVVEAVGEGVTRLKVGDRVAYGGGP--LGAYSEVHTLPEANLVKLPDNISFEQAA 98987
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
AV+ +GLT YL+ +Y PG ++ HAAAGG G L CQ AK GA++IG AEKA
Sbjct: 98986 AVMLKGLTVQYLLKQTYAVQPGDVILFHAAAGGVGSLACQWAKALGAKLIGTVSSAEKAE 98807
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
A ++G + IDY ++ K VYDGVG T+
Sbjct: 98806 RAKALGAWE-TIDYSREDVAKRVLELTDGKKCPVVYDGVGADTW 98678
Score = 87.4 bits (215), Expect = 1e-15, Method: Composition-based stats.
Identities = 63/164 (38%), Positives = 89/164 (54%), Gaps = 2/164 (1%)
Frame = -3
Query: 3 EGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAAAV 62
EGAG VV G GV +G RV Y G G YA+ + A L+ +PD V+D AAA+
Sbjct: 3125868 EGAGRVVATGEGVHNVQVGDRVGY--ATGPVGGYASARLYPAERLVHLPDEVSDEAAAAI 3125695
Query: 63 LCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLA 122
L +G+TA YL+ ++YP GPG+ ++++ AAG G L+ A+ GA VIG+ + A
Sbjct: 3125694 LFKGITAQYLLKTTYPVGPGTQILLYGAAGALGQLMVPWARHLGATVIGVVSRPQSMARA 3125515
Query: 123 TSVGRADVVIDYVAT--PDWPPLVRAAAPKGVDAVYDGVGQATF 164
+ G V++ AT L R +GVD VYD VG +
Sbjct: 3125514 QAAGCHHVLVFDAATLAGQVHELTRG---QGVDVVYDSVGNVSL 3125392
Score = 65.9 bits (159), Expect = 4e-09, Method: Composition-based stats.
Identities = 53/164 (32%), Positives = 75/164 (45%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V VG +G RV G G++A V +L +PD + AA
Sbjct: 5557882 GGEAAGVVAAVGERAGALQVGDRVMALTG---WGAFAEQVAVPFYNVLPIPDSMDFTTAA 5558052
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A T+ + + PG T++V A+GG GL ++ K GA+VI +EK
Sbjct: 5558053 AFGMTYGTSMHALKQRGQLQPGETLLVLGASGGVGLAAVEIGKAMGAKVIAAASNSEKLA 5558232
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
+A + G AD +IDY + R +GVD +YD VG F
Sbjct: 5558233 VAKAAG-ADELIDYSQASLKEEIKRLTGGQGVDVIYDPVGGELF 5558361
Score = 64.7 bits (156), Expect = 9e-09, Method: Composition-based stats.
Identities = 48/136 (35%), Positives = 63/136 (46%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AGT+ VG + E +G V FG +G G YA + L PDG++ A
Sbjct: 3469167 GVEVAGTIAAVGKNIHEYAVGDEV--FGFIGIVGGYATQALATPDRLAHKPDGLSLVHAG 3469340
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+ LTA + PG TV++H AAGG G Q+A+L GA V+ G
Sbjct: 3469341 GIPAAALTAWQALHEQAEIQPGQTVLIHGAAGGVGSFAVQLARLAGAHVVAT-GSTRNRD 3469517
Query: 121 LATSVGRADVVIDYVA 136
S+G A IDY A
Sbjct: 3469518 YLQSLG-AHQFIDYTA 3469562
Score = 62.0 bits (149), Expect = 7e-08, Method: Composition-based stats.
Identities = 44/102 (43%), Positives = 58/102 (56%), Gaps = 1/102 (0%)
Frame = -3
Query: 60 AAVLCQGLTAHY-LVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEK 118
+A+ G+TA++ L+D P G TVV+ AAG G +V Q+AK++G RV+GI GGA+K
Sbjct: 1564539 SALGMTGMTAYFALLDVGQP-KEGDTVVISGAAGAVGSIVGQIAKIKGCRVVGIAGGAQK 1564363
Query: 119 AMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
D VIDY A L R PKGVD +D VG
Sbjct: 1564362 CQYLKDELGFDGVIDYKAEDVLAGLKR-ECPKGVDVYFDNVG 1564240
Score = 58.5 bits (140), Expect = 6e-07, Method: Composition-based stats.
Identities = 60/181 (33%), Positives = 78/181 (43%), Gaps = 19/181 (10%)
Frame = +1
Query: 3 EGAGTVVKVGPGVSETMLGKRV------------------AYFGGVGCTGSYAAFTVVQA 44
+GAG V VG GVSE +G V A G G G +A
Sbjct: 717007 DGAGEVTAVGAGVSEFKVGDSVVSTFFPDWLDGQALVEGFASVPGDGIDGYAREQVTARA 717186
Query: 45 SALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKL 104
++ P G + A+AA + GLTA + S PG TV+V GG + Q AKL
Sbjct: 717187 TSFTLAPKGYSHAEAATLTTAGLTAWRALMSDGHLKPGDTVLVQ-GTGGVSIFALQFAKL 717363
Query: 105 RGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRA-AAPKGVDAVYDGVGQAT 163
GA VI K ++G AD +I+Y +TP W VR +GVD V + G AT
Sbjct: 717364 AGATVIATSSSDAKLERLKALG-ADHLINYKSTPAWGEKVRELTGNRGVDHVIEVGGPAT 717540
Query: 164 F 164
Sbjct: 717541 L 717543
Score = 48.5 bits (114), Expect = 7e-04, Method: Composition-based stats.
Identities = 43/134 (32%), Positives = 62/134 (46%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G + AGTV +VG VS G V G +A F V +A+ P + +AA
Sbjct: 2250306 GNDVAGTVKRVGGKVSRFRAGDEVFARVDQARMGGFAEFVAVSEAAVSLKPANLNMEEAA 2250485
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
++ LTA + PG V++ A +GG G + Q+AK GA V +
Sbjct: 2250486 SLPLVALTAWQALAEMANVQPGQKVLIQAGSGGVGSIAIQVAKHLGAFVATTTSTGNVSW 2250665
Query: 121 LATSVGRADVVIDY 134
+ ++G ADVVIDY
Sbjct: 2250666 V-KALG-ADVVIDY 2250701
Score = 45.8 bits (107), Expect = 0.004, Method: Composition-based stats.
Identities = 38/143 (26%), Positives = 63/143 (44%), Gaps = 5/143 (3%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G + G V +VG V+ G V Y G + GSY+ + +V + P + +A AA
Sbjct: 2860995 GWDAVGIVREVGNAVTLFQPGDEVFYAGAIDRPGSYSEYHLVDERIVGHKPRSLDNASAA 2860816
Query: 61 AVLCQGLTAHYLVDSSYPC----GPGSTVVVHAAAGGTGLLVCQMAK-LRGARVIGICGG 115
A+ +TA L+ G G ++++ A GG G ++ Q+A+ L VIG
Sbjct: 2860815 ALPLTSITAWELLFDRLSVEQYGGKGQSLLIIGAGGGVGSILVQLARQLTQLTVIGTASR 2860636
Query: 116 AEKAMLATSVGRADVVIDYVATP 138
+ + +G V+ V P
Sbjct: 2860635 PQTQQWVSELGAHHVIDHTVPIP 2860567
Score = 42.4 bits (98), Expect = 0.053, Method: Composition-based stats.
Identities = 42/132 (31%), Positives = 62/132 (46%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V +VGPG ++ +G RV + +G+ A VV A +L VP+G++ +AA
Sbjct: 1408713 GLECAGVVEEVGPG-ADWRVGDRVC---ALLASGAMAEEVVVDARHVLPVPEGLSLHEAA 1408880
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A+ TA + G V+VHA A G G Q+ K G V G E+
Sbjct: 1408881 ALPEVYATAWLNIFQLGAVKAGEKVLVHAGASGVGSAAIQLCKAFGNPVYVSVGSQERLA 1409060
Query: 121 LATSVGRADVVI 132
++G V+
Sbjct: 1409061 YCQALGATGGVV 1409096
Score = 39.7 bits (91), Expect = 0.31, Method: Composition-based stats.
Identities = 54/166 (32%), Positives = 77/166 (46%), Gaps = 2/166 (1%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRV-AYFGGVG-CTGSYAAFTVVQASALLEVPDGVTDAQ 58
G + AGTVV++G V G+ V GG+G G+ A + V A + P + +
Sbjct: 3569138 GLDLAGTVVELGEAVEGFTPGQEVFGMAGGIGGAQGTMAEYIAVDARLIAPKPHALGMRE 3568959
Query: 59 AAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEK 118
AAA+ +TA + G V++H AGG G + Q+AK RGA V G A+
Sbjct: 3568958 AAALPLVFITAWEGLVDRASVRSGQRVLIHGGAGGVGQVAVQLAKARGAEVYAT-GSADS 3568782
Query: 119 AMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
S+G IDY A + + A +G D VYD VG +T
Sbjct: 3568781 LDFIRSLGAT--AIDYQAQNVEAYVEQYTAGEGFDIVYDTVGGSTL 3568650
Score = 38.1 bits (87), Expect = 0.87, Method: Composition-based stats.
Identities = 39/136 (28%), Positives = 63/136 (46%)
Frame = +1
Query: 29 GVGCTGSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVH 88
G G A +V A ++VPDG+ A A+++ C G+T + V SS PG + V+
Sbjct: 2300809 GYTVDGGMAEACIVVADYAVKVPDGLDSAAASSITCAGVTTYKAVKSS-NIRPGQWIAVY 2300985
Query: 89 AAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAA 148
G L + + ARVI I E+ A +G AD+V++ + D +++A
Sbjct: 2300986 GLGGLGNLALQYAKNVFNARVIAIDVNDEQLAFAREMG-ADLVVN-ARSEDVAKVIQAQT 2301159
Query: 149 PKGVDAVYDGVGQATF 164
AV V ++ F
Sbjct: 2301160 GGAHAAVVTAVSKSAF 2301207
>gb|CP001339.1| Thioalkalivibrio sp. HL-EbGR7, complete genome
Length = 3464554
Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats.
Identities = 70/164 (42%), Positives = 94/164 (57%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V VG GV+ G RVAY G+YA ++ A+ L+++PD + + AA
Sbjct: 1733457 GMEAAGVVEDVGEGVTTLKEGDRVAY--ATPPPGAYAEARIMPAARLVKLPDNIEERTAA 1733630
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A++ +G+TAHYL+ + PG TV++HAAAGG GL+ CQ A+ GA VIG G KA
Sbjct: 1733631 AMMLRGMTAHYLLRRIHRVEPGDTVLIHAAAGGVGLIACQWARRLGATVIGTVGTDAKAE 1733810
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
+A + G D I Y + KGVDAVYD VG+ TF
Sbjct: 1733811 IARAHG-CDHPIVYTREDFVARVREITGGKGVDAVYDSVGKETF 1733939
Score = 35.8 bits (81), Expect = 4.5, Method: Composition-based stats.
Identities = 37/122 (30%), Positives = 54/122 (44%), Gaps = 3/122 (2%)
Frame = -3
Query: 13 PGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYL 72
PG + + G RV G G YA V+A L+ +P+G+T QA AV G TA
Sbjct: 1614839 PGDAVVLTGWRV----GEAHWGGYAQKARVKADWLVPLPEGLTARQAMAVGTAGFTAMLA 1614672
Query: 73 VDS--SYPCGP-GSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRAD 129
V + + P V+V A+GG G + + G V + G + A S+G
Sbjct: 1614671 VQALEDHRLSPEDGEVLVTGASGGVGSVAVSLLGRLGYSVAAVTGRPDNADYLKSLGATT 1614492
Query: 130 VV 131
+V
Sbjct: 1614491 IV 1614486
Score = 35.8 bits (81), Expect = 4.8, Method: Composition-based stats.
Identities = 36/128 (28%), Positives = 54/128 (42%), Gaps = 6/128 (4%)
Frame = +2
Query: 34 GSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVD------SSYPCGPGSTVVV 87
G YAA V A ++ +P+G+ +A + GLTA + S GP ++V
Sbjct: 3207485 GGYAARLRVPADWIIPIPEGLDTREAMLLGTAGLTAALALSRLEDNRQSVEAGP---MLV 3207655
Query: 88 HAAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAA 147
A+GG G L + RG V+ + G E +G + V+ P PL +A
Sbjct: 3207656 TGASGGVGALAVSLLAARGFEVVALTGKPELTDWLMGLGASRVLDRAAFRPGRRPLEKAQ 3207835
Query: 148 APKGVDAV 155
VD V
Sbjct: 3207836 WGGVVDTV 3207859
>gb|CP001016.1| Beijerinckia indica subsp. indica ATCC 9039, complete genome
Length = 4170153
Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats.
Identities = 73/168 (43%), Positives = 98/168 (58%), Gaps = 4/168 (2%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG ++ +GPGV++ +G RVAY V G YA +V A L+++P ++ AA
Sbjct: 3447190 GNEAAGEILALGPGVTQFKIGDRVAY---VSALGGYAEERIVPADRLVKLPKSISYETAA 3447020
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A++ +GLTA YL+ ++ G ++VHAAAGG GLL+CQ A GA VIG G EKA
Sbjct: 3447019 AMMLKGLTAQYLLRQTFKVKKGHVILVHAAAGGVGLLLCQWANALGAEVIGTVGSDEKAK 3446840
Query: 121 LATSVGRADVVI----DYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
LA G V++ D+VA L R K D VYDGVG+ATF
Sbjct: 3446839 LAKKAGAKHVILYREEDFVARVQ--ELTRG---KLCDVVYDGVGKATF 3446711
Score = 95.5 bits (236), Expect = 5e-18, Method: Composition-based stats.
Identities = 66/164 (40%), Positives = 85/164 (51%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G EGAG + G GVS +G R+A+ V GSYA V A AL+ +PD + D AA
Sbjct: 1683311 GVEGAGRIAAFGEGVSGFEVGDRIAW---VYKPGSYAERLVAPADALVPIPDTIDDRTAA 1683141
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A++ QGLTA + YP PG +VHAAAGG G L+ Q+ KLRG VIG K
Sbjct: 1683140 AIMMQGLTASHFATDFYPVQPGDVALVHAAAGGLGQLLTQIVKLRGGSVIGRVSSEAKVE 1682961
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
A G +++D L + +GV V+DG G TF
Sbjct: 1682960 AARRAGADHIIVDSEGRFTQDVLALTSG-EGVHVVFDGSGPKTF 1682832
Score = 89.0 bits (219), Expect = 5e-16, Method: Composition-based stats.
Identities = 65/164 (39%), Positives = 90/164 (54%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G EGAG V VG V++ +G R+AY G G+YAA ++ A ++PD ++ AA
Sbjct: 755224 GVEGAGVVEAVGADVADFHVGDRIAY---AGIPGAYAATRLLPAWRATKLPDDISAKTAA 755394
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A +GLTAH L+ +YP G G+T+++HA AGG G+ + + AK VI G EKA
Sbjct: 755395 ASFLRGLTAHMLLTRTYPVGRGTTLLIHAGAGGLGITLTRWAKQLDCTVIATVGSIEKAD 755574
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
+A + G AD VI T + R KGVD DG+G T
Sbjct: 755575 IARANG-ADHVIIGRETDIVAEVSRLTNAKGVDYAIDGIGGETL 755703
Score = 68.2 bits (165), Expect = 9e-10, Method: Composition-based stats.
Identities = 55/167 (32%), Positives = 81/167 (48%), Gaps = 2/167 (1%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG +VK+G GVS+ +G V G +G YA + + A+ L VP G++ +AA
Sbjct: 1447790 GLEVAGKIVKLGEGVSQWQIGDEVCALLG---SGGYAEYALADAALCLPVPKGLSLIEAA 1447960
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A+ T + V + PG ++H + G G Q+AK GA+V G AEK
Sbjct: 1447961 ALPETYFTVYDNVFTRGRLQPGENFLIHGGSSGIGSTAIQLAKQFGAKVFTTAGSAEKCA 1448140
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKG--VDAVYDGVGQATFA 165
++G AD IDY T D+ +R +D + D VG + A
Sbjct: 1448141 FCRTLG-ADHAIDY-KTSDFVEEIRKITDNKYPIDVILDMVGGSYIA 1448275
Score = 53.1 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 53/161 (32%), Positives = 78/161 (48%), Gaps = 2/161 (1%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G +G G + G GV +G R AY + GS+A FT++ A ++L +P V D AA
Sbjct: 3369213 GVDGVGVIAATGDGV-RLPIGLRGAYHQSLARDGSFAEFTIIDARSILPIPASVADVVAA 3369037
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEK-A 119
A+ C GLTA + P V+V A G G ++ Q+A G RV A +
Sbjct: 3369036 ALPCPGLTA-WQALRKVPRRMVRDVLVTGAGGSVGSILAQLAARCGWRVWVTAASAHRDK 3368860
Query: 120 MLATSVGRADVVIDYVATPDW-PPLVRAAAPKGVDAVYDGV 159
+LA + V DY P+W LV + P+ + A++D V
Sbjct: 3368859 LLALGITG---VFDY-RDPNWCDRLVESLGPRRLYAIFDTV 3368749
Score = 45.8 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 47/160 (29%), Positives = 73/160 (45%), Gaps = 1/160 (0%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCT-GSYAAFTVVQASALLEVPDGVTDAQA 59
G E AG V++VG V G V + C +A + A+ ++ P +T
Sbjct: 1284499 GLECAGRVLRVGSAVKGLEPGDPV-----IACAKNGFATHVTLPAAVVIRRPANLTAEAG 1284335
Query: 60 AAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKA 119
A + +TA+Y + + +++H AGG GL Q+A+ RGARVI G EK
Sbjct: 1284334 ATIPVAFMTAYYALINCASLKAREWILIHGGAGGVGLAALQIAQWRGARVIATAGSPEKR 1284155
Query: 120 MLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGV 159
L +G AD V+D + + + R KGV V + +
Sbjct: 1284154 RLLGLLG-ADHVLDSRSGAMFDEIRRITGGKGVHVVLNSL 1284038
Score = 37.7 bits (86), Expect = 1.4, Method: Composition-based stats.
Identities = 35/114 (30%), Positives = 57/114 (50%)
Frame = -2
Query: 34 GSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGG 93
G Y+ VV+ L VPDG+ ++AA +LC G+T Y ++ GPGS V V G
Sbjct: 2004530 GGYSKHLVVREEFALRVPDGLDLSKAAPLLCAGITT-YSPLRTWNVGPGSRVGVIGLGGL 2004354
Query: 94 TGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAA 147
+ V ++A GA V + EK A ++G +++ + D +++AA
Sbjct: 2004353 GHMAV-KLAAAMGADVTVLSRTKEKETDALALGADRLLV----STDEAAMIKAA 2004207
Score = 35.8 bits (81), Expect = 4.5, Method: Composition-based stats.
Identities = 29/100 (29%), Positives = 44/100 (44%)
Frame = +3
Query: 29 GVGCTGSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVH 88
G G +A + V + + +P G+ + A VLC GLT + + + PG+ V +
Sbjct: 867093 GYSVNGCFAEYVVADPNYVAHLPQGLDPIKVAPVLCAGLTVYKGLKMT-DTKPGNWVAI- 867266
Query: 89 AAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRA 128
+ GG G + Q G VI I EK A +G A
Sbjct: 867267 SGVGGLGQMAVQYGIAMGLNVIAIDIDEEKLATAKKLGAA 867386
>gb|CP000570.1| Burkholderia pseudomallei 668 chromosome I, complete sequence
Length = 3912947
Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats.
Identities = 70/164 (42%), Positives = 92/164 (56%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V ++G GV+ G RVAY G+YA V+ A+ L+++P+ + AA
Sbjct: 1212265 GMEAAGEVTELGEGVTALKPGDRVAYVAQP--PGAYAQERVLAAAKLVKLPEAIGYEDAA 1212438
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+ + QGLTA YL+ +Y PG T+V+HAAAGG GLLVCQ AK GA VIG G EKA
Sbjct: 1212439 SAMLQGLTAQYLLRRTYKVEPGDTIVIHAAAGGVGLLVCQWAKALGATVIGTVGSDEKAA 1212618
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
LA + G D I Y + GV VYD +G+ T+
Sbjct: 1212619 LAKAHG-CDHPIVYTRENFTERVKEITNGAGVPVVYDSIGKDTY 1212747
Score = 52.0 bits (123), Expect = 7e-05, Method: Composition-based stats.
Identities = 42/108 (38%), Positives = 55/108 (50%)
Frame = -1
Query: 57 AQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGA 116
A AV G+TA Y ++ G T+VV AA+G G +V Q+AKL G R +GI GGA
Sbjct: 2268905 AYLGAVGMPGVTAWYGLNRIIRPRAGETLVVSAASGAVGSVVGQLAKLAGCRAVGIAGGA 2268726
Query: 117 EKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
+K D +DY A + AAAP GVD ++ VG A
Sbjct: 2268725 DKCRYVVDTLGFDACVDYKAGRL-ADDLAAAAPDGVDGCFENVGGAVL 2268585
Score = 44.3 bits (103), Expect = 0.014, Method: Composition-based stats.
Identities = 55/181 (30%), Positives = 70/181 (38%), Gaps = 19/181 (10%)
Frame = +1
Query: 3 EGAGTVVKVGPGVSETMLGKRV------------------AYFGGVGCTGSYAAFTVVQA 44
+GAG V +G GV+E G V A G G G V A
Sbjct: 3064195 DGAGVVEAIGEGVTEFAPGDAVVSTFFPYWLDGGPTVADFATVPGDGVDGYARESVVRPA 3064374
Query: 45 SALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKL 104
P G T QAA + GLTA + G +V+V GG + Q AK
Sbjct: 3064375 HWFTHAPQGYTHEQAATLTTAGLTAWRALVVDGGLKAGDSVLV-LGTGGVSIFALQFAKR 3064551
Query: 105 RGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAP-KGVDAVYDGVGQAT 163
GA VI EK A ++G AD V++Y +W V A +GVD V + G T
Sbjct: 3064552 MGATVIATSSSDEKLERARALG-ADHVVNYRRDANWAAKVLALTNGRGVDHVIEVGGPDT 3064728
Query: 164 F 164
Sbjct: 3064729 L 3064731
Score = 41.2 bits (95), Expect = 0.12, Method: Composition-based stats.
Identities = 43/133 (32%), Positives = 62/133 (46%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E +G VV+VG V+E G + F S+A +A A+ P+ ++ +AA
Sbjct: 3165440 GMELSGRVVRVGSAVTEFAPGDAILGFA----PASFATRVRTRAQAIAPKPERLSFEEAA 3165273
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
V TA+Y + G V+VH AGG G+ Q+A+ GA V G EK
Sbjct: 3165272 TVPTTFFTAYYALVELARLRRGERVLVHGGAGGVGIAAIQLARYFGAEVFATAGSDEKRE 3165093
Query: 121 LATSVGRADVVID 133
+G AD V+D
Sbjct: 3165092 FVRLLG-ADHVLD 3165057
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
Length = 4126292
Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats.
Identities = 70/164 (42%), Positives = 92/164 (56%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V ++G GV+ G RVAY G+YA V+ A+ L+++P+ + AA
Sbjct: 1461467 GMEAAGEVTELGEGVTALKPGDRVAYVAQP--PGAYAQERVLAAAKLVKLPEAIGYEDAA 1461640
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+ + QGLTA YL+ +Y PG T+V+HAAAGG GLLVCQ AK GA VIG G EKA
Sbjct: 1461641 SAMLQGLTAQYLLRRTYKVEPGDTIVIHAAAGGVGLLVCQWAKALGATVIGTVGSDEKAA 1461820
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
LA + G D I Y + GV VYD +G+ T+
Sbjct: 1461821 LAKAHG-CDHPIVYTRENFTKRVKEITNGAGVPVVYDSIGKDTY 1461949
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 39/99 (39%), Positives = 52/99 (52%)
Frame = -3
Query: 66 GLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSV 125
G+TA Y ++ G T+VV AA+G G +V Q+AKL G R +GI GGA+K
Sbjct: 2716236 GVTAWYGLNRIIRPRAGETLVVSAASGAVGSVVGQLAKLAGCRAVGIAGGADKCRYVVDT 2716057
Query: 126 GRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
D +DY A + AAAP GVD ++ VG A
Sbjct: 2716056 LGFDACVDYKAGRL-ADDLAAAAPDGVDGCFENVGGAVL 2715943
Score = 44.3 bits (103), Expect = 0.014, Method: Composition-based stats.
Identities = 55/181 (30%), Positives = 70/181 (38%), Gaps = 19/181 (10%)
Frame = +1
Query: 3 EGAGTVVKVGPGVSETMLGKRV------------------AYFGGVGCTGSYAAFTVVQA 44
+GAG V +G GV+E G V A G G G V A
Sbjct: 3488908 DGAGVVEAIGEGVTEFAPGDAVVSTFFPYWLDGGPTVADFATVPGDGVDGYARESVVRPA 3489087
Query: 45 SALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKL 104
P G T QAA + GLTA + G +V+V GG + Q AK
Sbjct: 3489088 HWFTHAPQGYTHEQAATLTTAGLTAWRALVVDGGLKAGDSVLV-LGTGGVSIFALQFAKR 3489264
Query: 105 RGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAP-KGVDAVYDGVGQAT 163
GA VI EK A ++G AD V++Y +W V A +GVD V + G T
Sbjct: 3489265 MGATVIATSSSDEKLERARALG-ADHVVNYRRDANWAAKVLALTNGRGVDHVIEVGGPDT 3489441
Query: 164 F 164
Sbjct: 3489442 L 3489444
Score = 41.2 bits (95), Expect = 0.12, Method: Composition-based stats.
Identities = 43/133 (32%), Positives = 62/133 (46%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E +G VV+VG V+E G + F S+A +A A+ P+ ++ +AA
Sbjct: 3590159 GMELSGRVVRVGSAVTEFAPGDAILGFA----PASFATRVRTRAQAIAPKPERLSFEEAA 3589992
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
V TA+Y + G V+VH AGG G+ Q+A+ GA V G EK
Sbjct: 3589991 TVPTTFFTAYYALVELARLRRGERVLVHGGAGGVGIAAIQLARYFGAEVFATAGSDEKRE 3589812
Query: 121 LATSVGRADVVID 133
+G AD V+D
Sbjct: 3589811 FVRLLG-ADHVLD 3589776
>gb|CP000548.1| Burkholderia mallei NCTC 10247 chromosome I, complete sequence
Length = 3495687
Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats.
Identities = 70/164 (42%), Positives = 92/164 (56%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V ++G GV+ G RVAY G+YA V+ A+ L+++P+ + AA
Sbjct: 352599 GMEAAGEVTELGEGVTALKPGDRVAYVAQP--PGAYAQERVLAAAKLVKLPEAIGYEDAA 352772
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+ + QGLTA YL+ +Y PG T+V+HAAAGG GLLVCQ AK GA VIG G EKA
Sbjct: 352773 SAMLQGLTAQYLLRRTYKVEPGDTIVIHAAAGGVGLLVCQWAKALGATVIGTVGSDEKAA 352952
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
LA + G D I Y + GV VYD +G+ T+
Sbjct: 352953 LAKAHG-CDHPIVYTRENFTERVKEITNGAGVPVVYDSIGKDTY 353081
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 39/99 (39%), Positives = 52/99 (52%)
Frame = -2
Query: 66 GLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSV 125
G+TA Y ++ G T+VV AA+G G +V Q+AKL G R +GI GGA+K
Sbjct: 1183040 GVTAWYGLNRIIRPRAGETLVVSAASGAVGSVVGQLAKLAGCRAVGIAGGADKCRYVVDT 1182861
Query: 126 GRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
D +DY A + AAAP GVD ++ VG A
Sbjct: 1182860 LGFDACVDYKAGRL-ADDLAAAAPDGVDGCFENVGGAVL 1182747
Score = 44.3 bits (103), Expect = 0.014, Method: Composition-based stats.
Identities = 55/181 (30%), Positives = 70/181 (38%), Gaps = 19/181 (10%)
Frame = +2
Query: 3 EGAGTVVKVGPGVSETMLGKRV------------------AYFGGVGCTGSYAAFTVVQA 44
+GAG V +G GV+E G V A G G G V A
Sbjct: 1850495 DGAGVVEAIGEGVTEFAPGDAVVSTFFPYWLDGGPTVADFATVPGDGVDGYARESVVRPA 1850674
Query: 45 SALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKL 104
P G T QAA + GLTA + G +V+V GG + Q AK
Sbjct: 1850675 HWFTHAPQGYTHEQAATLTTAGLTAWRALVVDGGLKAGDSVLV-LGTGGVSIFALQFAKR 1850851
Query: 105 RGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAP-KGVDAVYDGVGQAT 163
GA VI EK A ++G AD V++Y +W V A +GVD V + G T
Sbjct: 1850852 MGATVIATSSSDEKLERARALG-ADHVVNYRRDANWAAKVLALTNGRGVDHVIEVGGPDT 1851028
Query: 164 F 164
Sbjct: 1851029 L 1851031
Score = 41.2 bits (95), Expect = 0.12, Method: Composition-based stats.
Identities = 43/133 (32%), Positives = 62/133 (46%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E +G VV+VG V+E G + F S+A +A A+ P+ ++ +AA
Sbjct: 2126065 GMELSGRVVRVGSAVTEFAPGDAILGFA----PASFATRVRTRAQAIAPKPERLSFEEAA 2125898
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
V TA+Y + G V+VH AGG G+ Q+A+ GA V G EK
Sbjct: 2125897 TVPTTFFTAYYALVELARLRRGERVLVHGGAGGVGIAAIQLARYFGAEVFATAGSDEKRE 2125718
Query: 121 LATSVGRADVVID 133
+G AD V+D
Sbjct: 2125717 FVRLLG-ADHVLD 2125682
>gb|CP000572.1| Burkholderia pseudomallei 1106a chromosome I, complete sequence
Length = 3988455
Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats.
Identities = 70/164 (42%), Positives = 92/164 (56%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V ++G GV+ G RVAY G+YA V+ A+ L+++P+ + AA
Sbjct: 1222772 GMEAAGEVTELGEGVTALKPGDRVAYVAQP--PGAYAQERVLAAAKLVKLPEAIGYEDAA 1222945
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+ + QGLTA YL+ +Y PG T+V+HAAAGG GLLVCQ AK GA VIG G EKA
Sbjct: 1222946 SAMLQGLTAQYLLRRTYKVEPGDTIVIHAAAGGVGLLVCQWAKALGATVIGTVGSDEKAA 1223125
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
LA + G D I Y + GV VYD +G+ T+
Sbjct: 1223126 LAKAHG-CDHPIVYTRENFTERVKEITNGAGVPVVYDSIGKDTY 1223254
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 39/99 (39%), Positives = 52/99 (52%)
Frame = -1
Query: 66 GLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSV 125
G+TA Y ++ G T+VV AA+G G +V Q+AKL G R +GI GGA+K
Sbjct: 2302551 GVTAWYGLNRIIRPRAGETLVVSAASGAVGSVVGQLAKLAGCRAVGIAGGADKCRYVVDT 2302372
Query: 126 GRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
D +DY A + AAAP GVD ++ VG A
Sbjct: 2302371 LGFDACVDYKAGRL-ADDLAAAAPDGVDGCFENVGGAVL 2302258
Score = 44.3 bits (103), Expect = 0.014, Method: Composition-based stats.
Identities = 55/181 (30%), Positives = 70/181 (38%), Gaps = 19/181 (10%)
Frame = +1
Query: 3 EGAGTVVKVGPGVSETMLGKRV------------------AYFGGVGCTGSYAAFTVVQA 44
+GAG V +G GV+E G V A G G G V A
Sbjct: 3080182 DGAGVVEAIGEGVTEFAPGDAVVSTFFPYWLDGGPTVADFATVPGDGVDGYARESVVRPA 3080361
Query: 45 SALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKL 104
P G T QAA + GLTA + G +V+V GG + Q AK
Sbjct: 3080362 HWFTHAPQGYTHEQAATLTTAGLTAWRALVVDGGLKAGDSVLV-LGTGGVSIFALQFAKR 3080538
Query: 105 RGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAP-KGVDAVYDGVGQAT 163
GA VI EK A ++G AD V++Y +W V A +GVD V + G T
Sbjct: 3080539 MGATVIATSSSDEKLERARALG-ADHVVNYRRDANWAAKVLALTNGRGVDHVIEVGGPDT 3080715
Query: 164 F 164
Sbjct: 3080716 L 3080718
Score = 40.8 bits (94), Expect = 0.13, Method: Composition-based stats.
Identities = 43/133 (32%), Positives = 62/133 (46%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E +G VV+VG V+E G + F S+A +A A+ P+ ++ +AA
Sbjct: 3181740 GMELSGRVVRVGSAVTEFAPGDAILGFA----PASFATRVRTRAQAIAPKPERLSFEEAA 3181573
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
V TA+Y + G V+VH AGG G+ Q+A+ GA V G EK
Sbjct: 3181572 TVPTTFFTAYYALVELARLRRGERVLVHGGAGGVGIAAIQLARYFGAEVFATAGSDEKRE 3181393
Query: 121 LATSVGRADVVID 133
+G AD V+D
Sbjct: 3181392 FVRLLG-ADHVLD 3181357
>gb|CP000546.1| Burkholderia mallei NCTC 10229 chromosome I, complete sequence
Length = 3458208
Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats.
Identities = 70/164 (42%), Positives = 92/164 (56%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V ++G GV+ G RVAY G+YA V+ A+ L+++P+ + AA
Sbjct: 808419 GMEAAGEVTELGEGVTALKPGDRVAYVAQP--PGAYAQERVLAAAKLVKLPEAIGYEDAA 808246
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+ + QGLTA YL+ +Y PG T+V+HAAAGG GLLVCQ AK GA VIG G EKA
Sbjct: 808245 SAMLQGLTAQYLLRRTYKVEPGDTIVIHAAAGGVGLLVCQWAKALGATVIGTVGSDEKAA 808066
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
LA + G D I Y + GV VYD +G+ T+
Sbjct: 808065 LAKAHG-CDHPIVYTRENFTERVKEITNGAGVPVVYDSIGKDTY 807937
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 39/99 (39%), Positives = 52/99 (52%)
Frame = +3
Query: 66 GLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSV 125
G+TA Y ++ G T+VV AA+G G +V Q+AKL G R +GI GGA+K
Sbjct: 3435213 GVTAWYGLNRIIRPRAGETLVVSAASGAVGSVVGQLAKLAGCRAVGIAGGADKCRYVVDT 3435392
Query: 126 GRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
D +DY A + AAAP GVD ++ VG A
Sbjct: 3435393 LGFDACVDYKAGRL-ADDLAAAAPDGVDGCFENVGGAVL 3435506
Score = 44.3 bits (103), Expect = 0.014, Method: Composition-based stats.
Identities = 55/181 (30%), Positives = 70/181 (38%), Gaps = 19/181 (10%)
Frame = -3
Query: 3 EGAGTVVKVGPGVSETMLGKRV------------------AYFGGVGCTGSYAAFTVVQA 44
+GAG V +G GV+E G V A G G G V A
Sbjct: 2767705 DGAGVVEAIGEGVTEFAPGDAVVSTFFPYWLDGGPTVADFATVPGDGVDGYARESVVRPA 2767526
Query: 45 SALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKL 104
P G T QAA + GLTA + G +V+V GG + Q AK
Sbjct: 2767525 HWFTHAPQGYTHEQAATLTTAGLTAWRALVVDGGLKAGDSVLV-LGTGGVSIFALQFAKR 2767349
Query: 105 RGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAP-KGVDAVYDGVGQAT 163
GA VI EK A ++G AD V++Y +W V A +GVD V + G T
Sbjct: 2767348 MGATVIATSSSDEKLERARALG-ADHVVNYRRDANWAAKVLALTNGRGVDHVIEVGGPDT 2767172
Query: 164 F 164
Sbjct: 2767171 L 2767169
Score = 41.2 bits (95), Expect = 0.12, Method: Composition-based stats.
Identities = 43/133 (32%), Positives = 62/133 (46%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E +G VV+VG V+E G + F S+A +A A+ P+ ++ +AA
Sbjct: 1074799 GMELSGRVVRVGSAVTEFAPGDAILGFA----PASFATRVRTRAQAIAPKPERLSFEEAA 1074632
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
V TA+Y + G V+VH AGG G+ Q+A+ GA V G EK
Sbjct: 1074631 TVPTTFFTAYYALVELARLRRGERVLVHGGAGGVGIAAIQLARYFGAEVFATAGSDEKRE 1074452
Query: 121 LATSVGRADVVID 133
+G AD V+D
Sbjct: 1074451 FVRLLG-ADHVLD 1074416
>gb|CP000526.1| Burkholderia mallei SAVP1 chromosome I, complete sequence
Length = 3497479
Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats.
Identities = 70/164 (42%), Positives = 92/164 (56%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V ++G GV+ G RVAY G+YA V+ A+ L+++P+ + AA
Sbjct: 1062800 GMEAAGEVTELGEGVTALKPGDRVAYVAQP--PGAYAQERVLAAAKLVKLPEAIGYEDAA 1062973
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+ + QGLTA YL+ +Y PG T+V+HAAAGG GLLVCQ AK GA VIG G EKA
Sbjct: 1062974 SAMLQGLTAQYLLRRTYKVEPGDTIVIHAAAGGVGLLVCQWAKALGATVIGTVGSDEKAA 1063153
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
LA + G D I Y + GV VYD +G+ T+
Sbjct: 1063154 LAKAHG-CDHPIVYTRENFTERVKEITNGAGVPVVYDSIGKDTY 1063282
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 39/99 (39%), Positives = 52/99 (52%)
Frame = -1
Query: 66 GLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSV 125
G+TA Y ++ G T+VV AA+G G +V Q+AKL G R +GI GGA+K
Sbjct: 1903519 GVTAWYGLNRIIRPRAGETLVVSAASGAVGSVVGQLAKLAGCRAVGIAGGADKCRYVVDT 1903340
Query: 126 GRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
D +DY A + AAAP GVD ++ VG A
Sbjct: 1903339 LGFDACVDYKAGRL-ADDLAAAAPDGVDGCFENVGGAVL 1903226
Score = 44.3 bits (103), Expect = 0.014, Method: Composition-based stats.
Identities = 55/181 (30%), Positives = 70/181 (38%), Gaps = 19/181 (10%)
Frame = -3
Query: 3 EGAGTVVKVGPGVSETMLGKRV------------------AYFGGVGCTGSYAAFTVVQA 44
+GAG V +G GV+E G V A G G G V A
Sbjct: 902657 DGAGVVEAIGEGVTEFAPGDAVVSTFFPYWLDGGPTVADFATVPGDGVDGYARESVVRPA 902478
Query: 45 SALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKL 104
P G T QAA + GLTA + G +V+V GG + Q AK
Sbjct: 902477 HWFTHAPQGYTHEQAATLTTAGLTAWRALVVDGGLKAGDSVLV-LGTGGVSIFALQFAKR 902301
Query: 105 RGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAP-KGVDAVYDGVGQAT 163
GA VI EK A ++G AD V++Y +W V A +GVD V + G T
Sbjct: 902300 MGATVIATSSSDEKLERARALG-ADHVVNYRRDANWAAKVLALTNGRGVDHVIEVGGPDT 902124
Query: 164 F 164
Sbjct: 902123 L 902121
Score = 41.2 bits (95), Expect = 0.12, Method: Composition-based stats.
Identities = 43/133 (32%), Positives = 62/133 (46%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E +G VV+VG V+E G + F S+A +A A+ P+ ++ +AA
Sbjct: 548735 GMELSGRVVRVGSAVTEFAPGDAILGFA----PASFATRVRTRAQAIAPKPERLSFEEAA 548902
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
V TA+Y + G V+VH AGG G+ Q+A+ GA V G EK
Sbjct: 548903 TVPTTFFTAYYALVELARLRRGERVLVHGGAGGVGIAAIQLARYFGAEVFATAGSDEKRE 549082
Query: 121 LATSVGRADVVID 133
+G AD V+D
Sbjct: 549083 FVRLLG-ADHVLD 549118
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence
Length = 3510148
Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats.
Identities = 70/164 (42%), Positives = 92/164 (56%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V ++G GV+ G RVAY G+YA V+ A+ L+++P+ + AA
Sbjct: 1970907 GMEAAGEVTELGEGVTALKPGDRVAYVAQP--PGAYAQERVLAAAKLVKLPEAIGYEDAA 1970734
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+ + QGLTA YL+ +Y PG T+V+HAAAGG GLLVCQ AK GA VIG G EKA
Sbjct: 1970733 SAMLQGLTAQYLLRRTYKVEPGDTIVIHAAAGGVGLLVCQWAKALGATVIGTVGSDEKAA 1970554
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
LA + G D I Y + GV VYD +G+ T+
Sbjct: 1970553 LAKAHG-CDHPIVYTRENFTERVKEITNGAGVPVVYDSIGKDTY 1970425
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 39/99 (39%), Positives = 52/99 (52%)
Frame = -1
Query: 66 GLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSV 125
G+TA Y ++ G T+VV AA+G G +V Q+AKL G R +GI GGA+K
Sbjct: 1485721 GVTAWYGLNRIIRPRAGETLVVSAASGAVGSVVGQLAKLAGCRAVGIAGGADKCRYVVDT 1485542
Query: 126 GRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
D +DY A + AAAP GVD ++ VG A
Sbjct: 1485541 LGFDACVDYKAGRL-ADDLAAAAPDGVDGCFENVGGAVL 1485428
Score = 44.3 bits (103), Expect = 0.014, Method: Composition-based stats.
Identities = 55/181 (30%), Positives = 70/181 (38%), Gaps = 19/181 (10%)
Frame = +2
Query: 3 EGAGTVVKVGPGVSETMLGKRV------------------AYFGGVGCTGSYAAFTVVQA 44
+GAG V +G GV+E G V A G G G V A
Sbjct: 2104364 DGAGVVEAIGEGVTEFAPGDAVVSTFFPYWLDGGPTVADFATVPGDGVDGYARESVVRPA 2104543
Query: 45 SALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKL 104
P G T QAA + GLTA + G +V+V GG + Q AK
Sbjct: 2104544 HWFTHAPQGYTHEQAATLTTAGLTAWRALVVDGGLKAGDSVLV-LGTGGVSIFALQFAKR 2104720
Query: 105 RGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAP-KGVDAVYDGVGQAT 163
GA VI EK A ++G AD V++Y +W V A +GVD V + G T
Sbjct: 2104721 MGATVIATSSSDEKLERARALG-ADHVVNYRRDANWAAKVLALTNGRGVDHVIEVGGPDT 2104897
Query: 164 F 164
Sbjct: 2104898 L 2104900
Score = 41.2 bits (95), Expect = 0.12, Method: Composition-based stats.
Identities = 43/133 (32%), Positives = 62/133 (46%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E +G VV+VG V+E G + F S+A +A A+ P+ ++ +AA
Sbjct: 2375023 GMELSGRVVRVGSAVTEFAPGDAILGFA----PASFATRVRTRAQAIAPKPERLSFEEAA 2374856
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
V TA+Y + G V+VH AGG G+ Q+A+ GA V G EK
Sbjct: 2374855 TVPTTFFTAYYALVELARLRRGERVLVHGGAGGVGIAAIQLARYFGAEVFATAGSDEKRE 2374676
Query: 121 LATSVGRADVVID 133
+G AD V+D
Sbjct: 2374675 FVRLLG-ADHVLD 2374640
>gb|CP000774.1| Parvibaculum lavamentivorans DS-1, complete genome
Length = 3914745
Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats.
Identities = 72/164 (43%), Positives = 96/164 (58%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V VG GV++ G RVAY G G+YA V A++ ++PDGV+D +AA
Sbjct: 1395944 GMEAAGVVEAVGEGVTQFAKGDRVAY--ASGPVGAYAEAHNVAAASAAKIPDGVSDEEAA 1395771
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+++ +GLTA +L+ ++ G T++ HAAAGG GL+ CQ AK GA VIG EKA
Sbjct: 1395770 SMMLKGLTAQFLLRQTFKVEKGQTILWHAAAGGVGLIACQWAKHLGATVIGTTSSDEKAA 1395591
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
+A + G D VIDY + K V VYDGVG+ATF
Sbjct: 1395590 IARANG-CDHVIDYTKEDVAERVKEITGGKKVPVVYDGVGKATF 1395462
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 61/159 (38%), Positives = 79/159 (49%), Gaps = 3/159 (1%)
Frame = -2
Query: 5 AGTVVKVGPGVSETMLGKRVAYFGG--VGCTGSYAAFTVVQASALLEVPDGVTDAQAAAV 62
AGTV+ G VSE M K + G V + + V A ++P + +V
Sbjct: 1210814 AGTVM-AGGSVSEVMEAKAPGFAKGDLVFADTGWQDYAAVPAKGAQKLPKMEPLSHLLSV 1210638
Query: 63 L-CQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAML 121
GLTA++ + G TVVV AAAG G +V Q+AK++G VIGI GGA K +
Sbjct: 1210637 YGIAGLTAYFGLLEVGKPKAGDTVVVSAAAGSVGTIVGQIAKIKGCTVIGIAGGAAKCKM 1210458
Query: 122 ATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
T D IDY A P L R AAPKG+D +D VG
Sbjct: 1210457 LTDELGFDAAIDYKAEPVGKAL-RKAAPKGIDVYFDNVG 1210344
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 55/161 (34%), Positives = 72/161 (44%), Gaps = 1/161 (0%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRV-AYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQA 59
G E AG VV GPGV+ G +V A GG G YA + + + L VP G T +A
Sbjct: 2276249 GLEVAGEVVATGPGVTMWKAGDKVCALVGG----GGYAEYCLAHEAHALPVPQGFTMTEA 2276082
Query: 60 AAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKA 119
AA+ T V PG T++VH + G G Q+A L G+ VI G AEK
Sbjct: 2276081 AALPETFFTVWTNVFERGALKPGETLLVHGGSSGIGTTAIQLASLFGSTVIATAGSAEKC 2275902
Query: 120 MLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
+G A ++Y R +GVD + D VG
Sbjct: 2275901 AACEKLG-AHAAVNYREQDFVAEAKRLTDGRGVDVILDMVG 2275782
Score = 60.8 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 59/182 (32%), Positives = 83/182 (45%), Gaps = 20/182 (10%)
Frame = +3
Query: 3 EGAGTVVKVGPGVSETMLGKRVA------YFGG------VGCT-------GSYAAFTVVQ 43
+G G +V+ G GV+ +G RVA +F G +G T G + +
Sbjct: 2706498 DGCGEIVEAGEGVTRLKVGDRVAPSFFQGWFAGGPRAEVLGATALGGPIDGCAQEYMCLS 2706677
Query: 44 ASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAK 103
A + + P ++DA+ A + C GLTA + G TV+V GG + Q AK
Sbjct: 2706678 AEGMSKAPANLSDAEVACLPCAGLTAWRALVVEGNIKAGDTVLVQ-GTGGVSIFALQFAK 2706854
Query: 104 LRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRA-AAPKGVDAVYDGVGQA 162
+ GARVI EK A +G AD I+Y ATP+W R +GVD V + G
Sbjct: 2706855 VMGARVIVTSSSDEKLERAKKLG-ADDFINYKATPNWAGEARKLTGGRGVDHVVEVGGAD 2707031
Query: 163 TF 164
TF
Sbjct: 2707032 TF 2707037
Score = 60.1 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 39/96 (40%), Positives = 56/96 (58%), Gaps = 1/96 (1%)
Frame = +2
Query: 66 GLTAHY-LVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATS 124
GLTA++ L++ P PG+TV+V AAAG G +V Q+AK++G R +GI GG +K
Sbjct: 407663 GLTAYFGLLELGRP-EPGNTVLVSAAAGAVGSIVGQIAKIKGCRAVGIAGGPDKCRHIVE 407839
Query: 125 VGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
D +DY DW + AA P G+D ++ VG
Sbjct: 407840 DLGFDAAVDY-KRKDWREQLAAATPDGIDVNFENVG 407944
Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 44/128 (34%), Positives = 56/128 (43%)
Frame = -2
Query: 33 TGSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAG 92
TG A FT V S G +A + G+TA + G TV V AA+G
Sbjct: 1204904 TGPAAGFTPVDPSL------GPIEAFLGTLGMPGMTAWAGLFKVANLKDGETVFVSAASG 1204743
Query: 93 GTGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGV 152
G +VCQ+AK G V+G G EK V D I+Y D V A PKG+
Sbjct: 1204742 AVGSVVCQLAKAHGCYVVGSAGSDEKCKWLEEVAGIDKAINYKTCGDLTKAVADAFPKGI 1204563
Query: 153 DAVYDGVG 160
D ++ VG
Sbjct: 1204562 DVYFENVG 1204539
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 56/161 (34%), Positives = 78/161 (48%), Gaps = 1/161 (0%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG VV +G G + ++GKRV + G+ A + A++ + VPD ++ AA
Sbjct: 2595270 GSEVAGKVVALGEGAPDALMGKRVM---ALSPRGALAGKIALPAASCIPVPDRMSAEAAA 2595100
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+ TA Y ++ G TV+V AAGG G+ +AK GARVI EK
Sbjct: 2595099 GFIVSYCTALYGFETCGHLREGETVLVLGAAGGVGMAAIDVAKAMGARVIAAASTGEKRA 2594920
Query: 121 LATSVGRADVVIDYVATPDW-PPLVRAAAPKGVDAVYDGVG 160
A + AD +DY P+W L + VD VYD VG
Sbjct: 2594919 AAKAR-GADFTLDY-TNPEWRKELEPLTGRRDVDLVYDPVG 2594803
Score = 49.7 bits (117), Expect = 3e-04, Method: Composition-based stats.
Identities = 56/164 (34%), Positives = 73/164 (44%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G + AGT+V+VG V+ G+RV V GS+A V A VPD + +AA
Sbjct: 2602760 GYQAAGTIVEVGAEVTHLKPGQRVT---TVNMHGSHAELRSVFARTAWVVPDNMDIREAA 2602590
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A+ TAH + PG TV+V A AG GL Q+AK GA VI E+
Sbjct: 2602589 AIPVPFGTAHDCLFEFGRLQPGETVLVQAGAGAVGLAAIQIAKRAGATVIATASSDERLE 2602410
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
G D I+Y R +GV+ V D VG +T
Sbjct: 2602409 SLKKYG-MDHGINYKTQDLVAEAKRLTDNRGVNLVVDPVGGSTL 2602281
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 56/165 (33%), Positives = 77/165 (46%), Gaps = 1/165 (0%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G EGAG V VG GV++ G RV G+ G +A + A A +P + A+AA
Sbjct: 483152 GMEGAGLVASVGEGVTKFKPGDRVV--AGLR-IGGFAEEVNISAEACRPIPGNMDFAKAA 483322
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A LTA+ + G T++VH + GG GL +M KL GA VI EK
Sbjct: 483323 AYPAAYLTAYVALVCRGHLQKGETLLVHGSTGGVGLAAVEMGKLLGATVIATSASDEKLK 483502
Query: 121 LATSVGRADVVIDYVATPDWPPLVRA-AAPKGVDAVYDGVGQATF 164
+ G AD V++ T + V+ +G D +YD VG F
Sbjct: 483503 VVKQRG-ADHVLN--VTKGFREQVKELTGGRGADVIYDPVGGDVF 483628
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 34/96 (35%), Positives = 50/96 (52%), Gaps = 1/96 (1%)
Frame = -2
Query: 66 GLTAHY-LVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATS 124
GLT+++ L++ P G TV++ +AAG G Q+AK++G RV+GI G EK
Sbjct: 1203716 GLTSYFGLLELGQP-KEGDTVLISSAAGPVGATAGQIAKMKGCRVVGIAGSKEKCDYVKG 1203540
Query: 125 VGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
+G D Y D ++ P GVD +D VG
Sbjct: 1203539 LG-FDACFSYRGA-DLRAAIKEHCPDGVDIYFDNVG 1203438
Score = 44.3 bits (103), Expect = 0.014, Method: Composition-based stats.
Identities = 30/100 (30%), Positives = 45/100 (45%), Gaps = 2/100 (2%)
Frame = -3
Query: 34 GSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYP--CGPGSTVVVHAAA 91
GS+A F VQ+ L+ P +T ++A TA+ ++ P PG V+V A+
Sbjct: 1755439 GSFAQFCRVQSQQLMPRPKHLTWEESACYTLTLATAYRMLFGHRPHILSPGQNVLVWGAS 1755260
Query: 92 GGTGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVV 131
GG G Q+ GA IG+ K S+G V+
Sbjct: 1755259 GGLGSFAVQLCATAGAHAIGVISDDSKHDFVMSMGAKGVI 1755140
Score = 44.3 bits (103), Expect = 0.015, Method: Composition-based stats.
Identities = 51/167 (30%), Positives = 73/167 (43%), Gaps = 7/167 (4%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E +G VVKVG GV + +G RV G G G +A + + + +PD + A+
Sbjct: 1513878 GGEVSGIVVKVGEGVDKVKVGDRV--IGSCGW-GGFAEEIALDQARVTPIPDEMDYVTAS 1514048
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A L T+H+ + PG T++V AAGG GL ++ K GARVI EK
Sbjct: 1514049 AFLMTYGTSHHALKDRANLKPGETLLVLGAAGGVGLAAVELGKAMGARVIAAASSEEKLA 1514228
Query: 121 LATSVGRADVVIDYVATPD-------WPPLVRAAAPKGVDAVYDGVG 160
+ G + ++ D + G D VYD VG
Sbjct: 1514229 VCKEHGADETLLYPTGALDKDAQKALTDKIKELTGGNGADVVYDPVG 1514369
Score = 41.2 bits (95), Expect = 0.11, Method: Composition-based stats.
Identities = 41/141 (29%), Positives = 63/141 (44%), Gaps = 6/141 (4%)
Frame = +2
Query: 21 GKRVAYFG---GVGCTGSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSY 77
G RV G G G G YA V+ L+++PD +++ +A A+ G T+ V +
Sbjct: 817769 GDRVVLNGYGVGEGHNGGYAQKARVKGDWLVKLPDAISNERAMAIGTAGYTSMLCVLALE 817948
Query: 78 PCG---PGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDY 134
G V+V AAGG G + + G RVI G A +A S+G +D++
Sbjct: 817949 KNGVTPDKGDVLVTGAAGGVGSVAIALLSKLGYRVIASTGRASEADYLKSLGASDIIDRN 818128
Query: 135 VATPDWPPLVRAAAPKGVDAV 155
+ P+ + VDAV
Sbjct: 818129 ELSAPGKPIGKERWAGAVDAV 818191
Score = 38.1 bits (87), Expect = 0.86, Method: Composition-based stats.
Identities = 47/112 (41%), Positives = 59/112 (52%), Gaps = 2/112 (1%)
Frame = +3
Query: 51 PDGVTDAQAAAVL-CQGLTAHY-LVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGAR 108
P+GV A A +L G TA+ L++ P PG TVVV AAAG G LV Q+AKL G R
Sbjct: 1265292 PEGVPLADAFGILSVAGPTAYVGLLEIGKP-KPGDTVVVTAAAGAVGALVGQIAKLHGCR 1265468
Query: 109 VIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
V+G+ G +K T D IDY L R AP G+D ++ VG
Sbjct: 1265469 VVGVAGSEDKCRWLTDELGFDAAIDYRKENVLDALKR-EAPNGIDVHFENVG 1265621
>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome
Length = 3402093
Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats.
Identities = 70/164 (42%), Positives = 92/164 (56%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG VV VGPGV+ G RVAY+ +G YA + A L+++PD +T Q A
Sbjct: 1633692 GNEAAGEVVSVGPGVTNFHPGDRVAYYFDLG---GYATDRNIPADKLVKLPDHITYEQGA 1633522
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
++ +GLT YL+ ++ G V++HAAAGG GLL CQ AK GA VIG G KA
Sbjct: 1633521 VLMLKGLTVWYLLHKTFKVEHGHRVLIHAAAGGIGLLACQWAKALGANVIGTVGSKAKAD 1633342
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
LA + G D VI Y + + + + D VYDGVG+ TF
Sbjct: 1633341 LALANG-CDHVILYEEEDFVARVKQISRNELCDVVYDGVGKMTF 1633213
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 48/160 (30%), Positives = 69/160 (43%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG VV +G G S G +V + G YA + V + + VP + +A
Sbjct: 2988461 GLEVAGEVVALGEGASRYRPGDKVM---SLVSGGGYAQYCVAHEAIAIPVPTAFSMIEAG 2988631
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+T + V G T+++H + G G + Q+AK+ GAR I G EKA
Sbjct: 2988632 GTPETLITVWHNVFERGALKAGETLLIHGGSSGIGTMAIQLAKVFGARTIVTVGSKEKAG 2988811
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
+G AD I+Y + A A G D + D VG
Sbjct: 2988812 ACLGLG-ADHAINYKLQDFVAEVKAATAGAGADLILDMVG 2988928
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
Length = 4967148
Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats.
Identities = 70/164 (42%), Positives = 95/164 (57%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G EGAG V VG V++ +G RVAY G+YA ++ A L+++PD + + AA
Sbjct: 4963809 GLEGAGVVEAVGDDVTDLKVGDRVAYANPP--LGAYAEVRLMPADRLVKLPDAIDERTAA 4963636
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A++ QG+TA YL+ +Y G T+++HAAAGG GLLVCQ A+ GA VIG G EKA
Sbjct: 4963635 AMMLQGMTAQYLLRRTYRVQAGDTILIHAAAGGVGLLVCQWARHLGATVIGTVGSPEKAE 4963456
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
LA + G D I Y + + +GV VYD VG+ TF
Sbjct: 4963455 LAKAHG-CDHPILYKSEDFVAKVREITNGEGVPVVYDSVGKDTF 4963327
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 55/164 (33%), Positives = 73/164 (44%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V +V GV+ G RV G++A V + + +PDG+ AA
Sbjct: 812843 GMELAGVVTEVADGVTTAKPGDRVM---ATVTGGAFAEEAVCDQTDVYVLPDGLDFVTAA 812673
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
T+H + G T+VVH AAGG GL ++ + GA VIG GG +K
Sbjct: 812672 GFPVAYGTSHLGLKGKAGLKSGETLVVHGAAGGVGLTAVEVGRALGATVIGTAGGPDKVK 812493
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
+A G A IDY A + +G D VYD VG F
Sbjct: 812492 VALEHG-AHFGIDYKAEDIRERVKALTDGRGADVVYDPVGGQVF 812364
Score = 58.2 bits (139), Expect = 8e-07, Method: Composition-based stats.
Identities = 62/166 (37%), Positives = 81/166 (48%), Gaps = 6/166 (3%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCT------GSYAAFTVVQASALLEVPDGV 54
G + AGTV +G GV+ LG+RV + C G+YA + V+ A + +P G
Sbjct: 1680309 GWDAAGTVAALGDGVTGLSLGERVWSY----CRKPEIQWGTYAEYVVMSAYGVAPMPAGF 1680142
Query: 55 TDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICG 114
T AQA V LTA + PG +V++HA AGG G +AK GA VI
Sbjct: 1680141 TFAQACTVPLAALTAWQSLLEVAGLRPGQSVLIHAGAGGVGGFAIPIAKWVGATVIATAK 1679962
Query: 115 GAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
+ S+G AD VIDY AT D+ RA P GVD + VG
Sbjct: 1679961 AGNHDYV-RSLG-ADHVIDYSAT-DFVAATRALVPDGVDMAFGTVG 1679833
Score = 52.0 bits (123), Expect = 6e-05, Method: Composition-based stats.
Identities = 55/161 (34%), Positives = 73/161 (45%), Gaps = 1/161 (0%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AGT+ +G G + LG RV + G YA + V A L +P G +AA
Sbjct: 2869079 GLEVAGTIAALGEGAASPALGSRVC---ALAPGGGYAEYCTVDARHCLPIPAGYDMIRAA 2869249
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A+ T + V G +VH AGG G Q+AK GA V G K
Sbjct: 2869250 ALPETFFTVWHNVVERGQLKAGERFLVHGGAGGIGTTAIQLAKALGATVFATANGEAKGK 2869429
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAP-KGVDAVYDGVG 160
+G AD IDY +T D+ +++A KGVD + D VG
Sbjct: 2869430 ACRDLG-ADFAIDY-STADFVEVIKAETKGKGVDVILDMVG 2869546
Score = 44.3 bits (103), Expect = 0.013, Method: Composition-based stats.
Identities = 29/100 (29%), Positives = 47/100 (47%), Gaps = 2/100 (2%)
Frame = -3
Query: 34 GSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYP--CGPGSTVVVHAAA 91
GS+A F VQA +++ P +T ++A TA+ ++ P PG V+V AA
Sbjct: 348898 GSFAQFCRVQAQQVMQRPKHLTWEESACYTLTLATAYRMLFGHRPHVLRPGHNVLVWGAA 348719
Query: 92 GGTGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVV 131
GG G + Q+ + G IG+ +K +G V+
Sbjct: 348718 GGLGSMAIQLIAVSGGNAIGVVSEEDKREFVLGLGAKGVI 348599
Score = 37.4 bits (85), Expect = 1.6, Method: Composition-based stats.
Identities = 43/137 (31%), Positives = 56/137 (40%), Gaps = 5/137 (3%)
Frame = +2
Query: 34 GSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLV----DSSYPCGPGSTVVVHA 89
G YAA V+A L+ +P G++ QA AV G TA V D V+V
Sbjct: 3323153 GGYAAKARVKADWLVPLPQGLSARQAMAVGTAGFTAMLAVMALEDHGLRTSDEGEVLVTG 3323332
Query: 90 AAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDY-VATPDWPPLVRAAA 148
AAGG G + + G RV G S+G + +V V P PL+
Sbjct: 3323333 AAGGLGSVAVLLLSKLGYRVAASTGRESLGEYLRSLGASSIVDRAEVGAPPAKPLLSERW 3323512
Query: 149 PKGVDAVYDGVGQATFA 165
VD+ VG AT A
Sbjct: 3323513 AAAVDS----VGGATLA 3323551
>gb|CP000850.1| Salinispora arenicola CNS-205, complete genome
Length = 5786361
Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats.
Identities = 74/164 (45%), Positives = 94/164 (57%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G EG+GTV+ VG GV+ G R+A+ GC GSYA +V A ++ VPD ++ AA
Sbjct: 2436363 GFEGSGTVLAVGDGVTGVHEGDRIAW---SGCPGSYATHCLVPAQRVVPVPDPISLTDAA 2436533
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
AVL QG+TAH+LV P +V AAAGG G L+ Q+A LRGA VIG + KA
Sbjct: 2436534 AVLVQGMTAHFLVSDVAPLAEADVCLVQAAAGGVGGLLTQLAVLRGATVIGTVSSSAKAA 2436713
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
A G VV DY P P ++ +GVD VYD VG+ TF
Sbjct: 2436714 AARQAGATHVV-DYSREPFHPRVLEITGGRGVDVVYDAVGRDTF 2436842
Score = 56.2 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 53/169 (31%), Positives = 73/169 (43%), Gaps = 18/169 (10%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVG-CTGSYAAFTVVQASALLEVPDGVTDAQA 59
G + AG V VG V++ G A FG +G G++A + + P +T QA
Sbjct: 719438 GRDFAGVVDAVGAHVTQLRPGD--AVFGDLGEANGAFAEYVCIPEHLAAPKPTNLTPQQA 719265
Query: 60 AAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKA 119
AA+ G+TA + PG V+++ A+GG G L Q+AK GA V G+C
Sbjct: 719264 AALPLAGITALMGLSDVGQVEPGHRVLINGASGGVGTLAVQLAKALGASVTGVC-STRNV 719088
Query: 120 MLATSVG-----------------RADVVIDYVATPDWPPLVRAAAPKG 151
L S+G R DVV+D V L RA P G
Sbjct: 719087 DLVRSLGADHVVDYTRSDFTRGSRRHDVVLDLVGNRSLTALRRALTPTG 718941
Score = 56.2 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 55/165 (33%), Positives = 77/165 (46%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V VGP V G RV F G + + + +++ +PD V AQAA
Sbjct: 2756877 GLEFAGDVTAVGPAVRRLRAGDRVFGFTSFGAGANAEYKCLSERASITTMPDNVAYAQAA 2756698
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A + TA + + PG V+V A+G G Q+AK GA V G+C G A
Sbjct: 2756697 AAVDGFTTAWHFLHDLAKVQPGQRVLVIGASGSIGTYAIQLAKYLGAVVHGVCSG-RNAK 2756521
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATFA 165
L S+G AD V DY + + A++D VG+++FA
Sbjct: 2756520 LVESLG-ADRVFDYTVED------FTTSGERYSAIFDTVGRSSFA 2756407
Score = 53.1 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 44/135 (32%), Positives = 67/135 (49%), Gaps = 1/135 (0%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAF-TVVQASALLEVPDGVTDAQA 59
G + AG V VG V+ +G V + G +A + T+ + +L+ P G++ QA
Sbjct: 4426376 GFDLAGQVEAVGRNVTTLRVGDEVFGCQDLEHAGVFAEYVTIPHDAGVLKKPVGLSLEQA 4426197
Query: 60 AAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKA 119
A+V LTA+ + PG ++V+ AAGG G Q+ K GA V +C
Sbjct: 4426196 ASVPVAALTAYQALRHHGRLQPGHKILVNGAAGGVGTFAVQIGKALGAEVTAVCSTRNVE 4426017
Query: 120 MLATSVGRADVVIDY 134
M+ ++G AD VIDY
Sbjct: 4426016 MV-RALG-ADHVIDY 4425978
Score = 52.8 bits (125), Expect = 4e-05, Method: Composition-based stats.
Identities = 46/149 (30%), Positives = 63/149 (42%), Gaps = 10/149 (6%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V VGPGV+ +G RV V G++A + VV A + +P + +AA
Sbjct: 1160013 GSELAGVVEAVGPGVTNLAVGDRVFTRVDVMKLGAFAPYAVVAADLVAPMPQSLDFTEAA 1160192
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICG------ 114
+ GLTA + G + + AGG G L Q+A GA V
Sbjct: 1160193 GLPLAGLTALQALRDELNIEKGQRIFISGGAGGVGTLAIQLAAWMGAHVATTASPAGENL 1160372
Query: 115 ----GAEKAMLATSVGRADVVIDYVATPD 139
GAE + + DV+ DY A D
Sbjct: 1160373 VRSLGAETVLNYQTTSFKDVLRDYDAVLD 1160459
Score = 52.0 bits (123), Expect = 7e-05, Method: Composition-based stats.
Identities = 49/129 (37%), Positives = 64/129 (49%), Gaps = 2/129 (1%)
Frame = -1
Query: 34 GSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGG 93
G YA + + +E+P G+ D QA + QG TA+ + + G +V V AAAGG
Sbjct: 3304656 GGYAEVAAAREAHTVEIPAGIDDPQALGLFEQGSTAYGALSLAGRLRAGESVAVSAAAGG 3304477
Query: 94 TGLLVCQMAKLRGAR-VIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVR-AAAPKG 151
G L Q+A GA VIG+ + K T +G ADV +D A P VR AA G
Sbjct: 3304476 VGHLAVQLAVALGASPVIGLASTSAKRRFVTGLG-ADVALD-PADPMLADRVREAAGGTG 3304303
Query: 152 VDAVYDGVG 160
VD D VG
Sbjct: 3304302 VDLFVDSVG 3304276
Score = 51.6 bits (122), Expect = 7e-05, Method: Composition-based stats.
Identities = 42/96 (43%), Positives = 51/96 (53%), Gaps = 1/96 (1%)
Frame = -3
Query: 66 GLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGA-RVIGICGGAEKAMLATS 124
GLTA+ + PG TV V AAG G +V Q+AKLRGA RV+G G K +
Sbjct: 3943837 GLTAYAGLIEVAAMQPGETVFVSGAAGAVGSMVGQIAKLRGAGRVVGSAGSPAKVERLRA 3943658
Query: 125 VGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
+G D DY P L RAAAP G+D +D VG
Sbjct: 3943657 LG-FDAAFDYHDGPVSEQL-RAAAPDGIDVYFDNVG 3943556
Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 35/84 (41%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
Frame = +2
Query: 81 PGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDW 140
PG T+V+ A+G G LV Q+AK GARV+G K T +G D V+ Y D
Sbjct: 2774258 PGDTLVISGASGAVGTLVGQLAKRAGARVVGTTSSPAKIGFLTELG-FDAVVPYRLGDD- 2774431
Query: 141 PPLVRA----AAPKGVDAVYDGVG 160
P VR AAP GVD +D +G
Sbjct: 2774432 PDRVREELLRAAPDGVDRYFDNLG 2774503
Score = 48.1 bits (113), Expect = 9e-04, Method: Composition-based stats.
Identities = 54/165 (32%), Positives = 78/165 (47%), Gaps = 5/165 (3%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRV---AYFGGVGCTGSYAAFTVVQASALLEVPDGVTDA 57
G E AG V VG V +G+RV FGG +A V AS +L +PDG+
Sbjct: 3211999 GYEVAGVVDAVGAEVVGLEVGQRVLALVRFGG------HADSVCVPASRVLPMPDGLGFT 3212160
Query: 58 QAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAK-LRGARVIGICGGA 116
+ AA+ LTA++++ P + V+VH AAGG G+ V Q+ + + G G A
Sbjct: 3212161 EGAALPVNYLTAYHMLFRVANLRPEARVLVHMAAGGVGIAVLQLCRTVPGVVTFGTASAA 3212340
Query: 117 EKAMLATSVGRADVVIDYVATPDWPPLVRAAAP-KGVDAVYDGVG 160
+ +L IDY T D+ VR +G+D V D +G
Sbjct: 3212341 KHDVLREE--GCTHPIDY-RTEDYVTRVRELTDGEGLDLVLDSLG 3212466
Score = 43.9 bits (102), Expect = 0.019, Method: Composition-based stats.
Identities = 45/162 (27%), Positives = 70/162 (43%), Gaps = 26/162 (16%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVS------------------------ETMLGKRVAYFGGVGCTGSY 36
G + AG V++ GPGV+ +TML + +G G
Sbjct: 4542776 GSDAAGVVLRTGPGVTRWQAGDEVVAHCLSVELEEAAGHDDTMLDPQQRIWGFETNFGGL 4542955
Query: 37 AAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCG--PGSTVVVHAAAGGT 94
A VV+A+ L+ P ++ +AA+ TA+ + S + G V++ A+GG
Sbjct: 4542956 AELAVVKANQLMPKPRHLSWEEAASPGLVNSTAYRQLVSHHGANMKQGDVVLIWGASGGL 4543135
Query: 95 GLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVA 136
G QMA GA + + +KA L +G AD+VID A
Sbjct: 4543136 GSYATQMALTGGAIPVCVVSSPDKAELCRRMG-ADLVIDRAA 4543258
Score = 35.0 bits (79), Expect = 8.2, Method: Composition-based stats.
Identities = 40/149 (26%), Positives = 57/149 (38%), Gaps = 31/149 (20%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRV-AYFGGVGC--------------------------- 32
G E G V +VGP V+ +G RV A + GC
Sbjct: 2422502 GHEPVGEVAEVGPDVTSRQVGDRVGATWVRAGCGRCDYCQRNLPVSGQTAINCPSPTTTG 2422323
Query: 33 ---TGSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHA 89
G +A + V +A + +PDG+ AA V+C G TA + ++ P P V V
Sbjct: 2422322 FSVLGGHAEYLVTRADETVLIPDGLPFELAAPVMCAGYTAWSALRAANPL-PHERVAV-L 2422149
Query: 90 AAGGTGLLVCQMAKLRGARVIGICGGAEK 118
G G L Q A+ G + I +K
Sbjct: 2422148 GIGALGHLAVQFARATGFETVAITRSVDK 2422062
>emb|CU234118.1| Bradyrhizobium sp. ORS278,complete sequence
Length = 7456587
Score = 102 bits (255), Expect = 3e-20, Method: Composition-based stats.
Identities = 67/168 (39%), Positives = 95/168 (56%), Gaps = 4/168 (2%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V+ VGPGV+ RVAY+ +G YA + L+++PD +T Q A
Sbjct: 3954780 GNEAAGEVIAVGPGVTHFHPSDRVAYYENLG---GYATERNIGWQRLVKLPDHITYEQGA 3954950
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
++ +GLT YL+ ++ P V++HAAAGG GLL CQ A+ GA VIG G KA
Sbjct: 3954951 VLMLKGLTVWYLLHKTFKVEPHHRVLIHAAAGGIGLLACQWARALGAHVIGTVGSKAKAD 3955130
Query: 121 LATSVGRADVVI----DYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
LA + G V++ D+VA + + + +G D VYDGVG++TF
Sbjct: 3955131 LALANGCDHVILYNEEDFVAR-----VKQISRGEGCDVVYDGVGKSTF 3955259
Score = 86.7 bits (213), Expect = 2e-15, Method: Composition-based stats.
Identities = 58/153 (37%), Positives = 86/153 (56%), Gaps = 4/153 (2%)
Frame = -2
Query: 16 SETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDS 75
++ +G RVAY G G+Y+ ++ A+ LL++PD + D AAA++ +GLTA YL+
Sbjct: 5554571 TDLKVGDRVAY--GSSPLGAYSEARLMPAALLLKLPDEIDDKTAAAMMLKGLTAQYLIRQ 5554398
Query: 76 SYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVI--- 132
+Y G T+++HAAAGG GL++ Q AK G VIG +KA LA + G ++
Sbjct: 5554397 TYRVKAGETILLHAAAGGVGLILSQWAKHLGVTVIGTVSSDDKAQLAEAHGCEHTIVYSR 5554218
Query: 133 -DYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
D+VA + K V VYD VG+ TF
Sbjct: 5554217 EDFVARVN-----EITGGKKVPVVYDSVGKDTF 5554134
Score = 68.6 bits (166), Expect = 7e-10, Method: Composition-based stats.
Identities = 61/180 (33%), Positives = 82/180 (45%), Gaps = 18/180 (10%)
Frame = +2
Query: 3 EGAGTVVKVGPGVSETMLGKRV--AYF--------------GGVG--CTGSYAAFTVVQA 44
+GAG V VG GVS G RV ++F G +G G+ + + + A
Sbjct: 3018092 DGAGVVEAVGEGVSTFAPGDRVIGSFFESWTGGEPSETKMRGALGGAVDGTLSEYRIFPA 3018271
Query: 45 SALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKL 104
AL+ P +TD +AA + C G+TA V PG TV+ GG + Q+AKL
Sbjct: 3018272 QALVRTPAHLTDIEAATLPCAGVTAWSAVVKLGGIRPGQTVLTQ-GTGGVSIFALQIAKL 3018448
Query: 105 RGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
GARVI K T +G A+V ++Y TPDW R GVD V + G T
Sbjct: 3018449 AGARVIATSSSEAKIARLTELG-AEVTLNYKTTPDWGKHAREITRHGVDLVVEVGGVGTL 3018625
Score = 58.2 bits (139), Expect = 8e-07, Method: Composition-based stats.
Identities = 53/164 (32%), Positives = 79/164 (48%), Gaps = 2/164 (1%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V ++GP +G RV G ++A +T+ L P + +AA
Sbjct: 5157922 GMEWAGEVAELGPDAKGVKVGDRVMGSGA----AAFAEYTLADHGRLFHAPSNMNFDEAA 5158089
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGAR-VIGICGGAEKA 119
+ T H V ++ PG +V+V A+ G GL+ Q+AKL+GAR VIG A +
Sbjct: 5158090 TLPIALSTMHNAVVTNGALQPGQSVLVQGASSGVGLMAMQIAKLKGARLVIGSSTDATRR 5158269
Query: 120 MLATSVGRADVVIDYVATPDW-PPLVRAAAPKGVDAVYDGVGQA 162
G AD+ ID + P W +++A +GVD + D V A
Sbjct: 5158270 GRLKEFG-ADLAID-SSDPAWVDQVLQATNGQGVDLIIDQVSGA 5158395
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 54/161 (33%), Positives = 79/161 (49%), Gaps = 1/161 (0%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVT-DAQA 59
G E AG + VG GV++ +G RV G G+ + A+A++++PD + D A
Sbjct: 266130 GAEVAGIIESVGDGVTDLKVGDRVV--ASCGHNGAREKIAL-PAAAIVKIPDHLDFDRAA 266300
Query: 60 AAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKA 119
++ G H L D + P PG T+ V AAGGTGL C++ +L G +VI EK
Sbjct: 266301 GIIIIYGTALHALEDRASP-KPGETLAVLGAAGGTGLAACELGQLMGLKVIACASSDEKL 266477
Query: 120 MLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
A G A + ++Y L R KG D ++D VG
Sbjct: 266478 AFAKQHG-ATLTLNYAKDDLKEGLRRLTDGKGADIIFDPVG 266597
Score = 49.3 bits (116), Expect = 4e-04, Method: Composition-based stats.
Identities = 51/174 (29%), Positives = 76/174 (43%), Gaps = 14/174 (8%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G + AG V VGP V+ G V Y G + G+ A F +V + P ++ A+AA
Sbjct: 4828309 GYDAAGVVEAVGPEVTLFKAGDEVFYAGSILRQGTNAEFHLVDERIVGHKPKSLSFAEAA 4828488
Query: 61 AVLCQGLTAHYLVDSSYPCGPGS-----TVVVHAAAGGTGLLVCQMA-KLRGARVIGICG 114
A+ +TA L+ PG T+++ AAGG G ++ Q+A +L G V+
Sbjct: 4828489 ALPLTSITAWELLFDRLGAVPGKSLDDRTLLITGAAGGVGSILTQLARRLTGLTVLATAT 4828668
Query: 115 GAEKAMLATSVGRADVVIDYVATP--------DWPPLVRAAAPKGVDAVYDGVG 160
E S+G A VID+ A P PP+ A+ D Y +
Sbjct: 4828669 RPESRDWCLSLG-AHAVIDH-AKPMKEQIDALKLPPVALIASLTHTDQHYKAIA 4828824
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 44/167 (26%), Positives = 75/167 (44%), Gaps = 2/167 (1%)
Frame = -2
Query: 1 GEEGAGTVVKVGPG-VSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQA 59
G EGAG VVK G ++ ++G+ VA G Y+ + ++ S L +P G T +
Sbjct: 4283924 GNEGAGVVVKTGSSDAAKALMGRTVAAIGA----AMYSQYRCLKISECLPLPAGTTPEEG 4283757
Query: 60 AAVLCQGLTAHYLVDSSYPCGPGSTVVVH-AAAGGTGLLVCQMAKLRGARVIGICGGAEK 118
A+ LT+ + ++ G T +VH AAA G ++ ++ G ++ I + +
Sbjct: 4283756 ASCFVNPLTSLGMTETMKR--EGHTALVHTAAASNLGQMLNKICLKDGIPLVNIVRSSAQ 4283583
Query: 119 AMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATFA 165
A L +G A V+D + L+ A G +D +G A
Sbjct: 4283582 AELLRGIG-AKYVVDSTSPAFMDELIAALVETGATIAFDAIGGGKLA 4283445
Score = 44.7 bits (104), Expect = 0.010, Method: Composition-based stats.
Identities = 55/164 (33%), Positives = 75/164 (45%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V++ G V++ +G +V G A V AS L +P A+ A
Sbjct: 3113358 GVEAAGDVIEAGAAVTDHAVGDKVIVRMRFGAYAEEAV---VAASQLTPLPSPFDYAEGA 3113528
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
L TAH+ + PG T++VH A GG GL ++ KL GA VI EK
Sbjct: 3113529 TYLAGHGTAHHALVDRGQLKPGETLLVHGAGGGVGLAAVELGKLIGATVIAAASSEEKLA 3113708
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
A + G AD ++ Y P + R +GVD V+D VG F
Sbjct: 3113709 AARARG-ADHLVLYAREPFRDAVKRITGGRGVDVVFDPVGGEVF 3113837
Score = 41.2 bits (95), Expect = 0.11, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 35/65 (53%)
Frame = +2
Query: 100 QMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGV 159
Q+AK++GAR IGI GG +K S D +D+ PD ++ A P G+D ++ V
Sbjct: 3369968 QIAKIKGARAIGIAGGKDKCDYVRSEFGFDDCLDH-RDPDLAAKLKVACPDGIDVYFENV 3370144
Query: 160 GQATF 164
G F
Sbjct: 3370145 GGPVF 3370159
Score = 36.2 bits (82), Expect = 4.0, Method: Composition-based stats.
Identities = 49/186 (26%), Positives = 72/186 (38%), Gaps = 47/186 (25%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRV------------------------AYFGGVGCTGSY 36
G E AG V VGPGV +G V + F G+ G Y
Sbjct: 4544523 GHENAGWVEAVGPGVEGVKVGDSVICHPLVTSGHCLACRRGNDMHALDSSFPGINANGGY 4544344
Query: 37 AAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLV-DSSYPCGPGSTVVVHAAAGGTG 95
A + + +L+++P + A GLTA+ +S PG VVV A G
Sbjct: 4544343 AQYLLTGQRSLIKLPKSLAPKDVAPYTDAGLTAYRAAKKASRHLLPGEYVVVIGAGGLGH 4544164
Query: 96 LLVCQMAKLRGARVIGI------------C---------GGAEKAMLATSVGR-ADVVID 133
+ + +A L A ++ + C GG +A+LA + GR A+ VID
Sbjct: 4544163 IGIQVLAALCAAEIVVVDRSEKSLELAKTCGAHHLVKAEGGEVEAVLALTGGRGAEAVID 4543984
Query: 134 YVATPD 139
+V D
Sbjct: 4543983 FVGEGD 4543966
Score = 35.8 bits (81), Expect = 5.4, Method: Composition-based stats.
Identities = 37/125 (29%), Positives = 55/125 (44%), Gaps = 3/125 (2%)
Frame = +2
Query: 34 GSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTA--HYLVDSSYPCGPGS-TVVVHAA 90
G+YA V+ L+ +P G++ A A+ G TA L + P S VVV A
Sbjct: 2171798 GAYAEKARVKGDWLVALPQGLSARDAMAIGTAGFTAMLSVLALEKHGLTPASGPVVVTGA 2171977
Query: 91 AGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPK 150
AGG G + + G VI G +A S+G A+++ + PL +
Sbjct: 2171978 AGGVGSVATAVLAKLGYHVIASTGRVAEADYLKSLGAAEIIDRNELSGPAKPLAKERWAG 2172157
Query: 151 GVDAV 155
GVD+V
Sbjct: 2172158 GVDSV 2172172
>gb|CP000926.1| Pseudomonas putida GB-1, complete genome
Length = 6078430
Score = 102 bits (255), Expect = 3e-20, Method: Composition-based stats.
Identities = 66/164 (40%), Positives = 92/164 (56%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V VG GV+ +G RVA+ GG G+Y+ + + L+++PD ++ QAA
Sbjct: 95796 GTEAAGVVEAVGEGVTRLKVGDRVAHAGGP--LGAYSEVHTLPEANLVKLPDNISFEQAA 95623
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
AV+ +GLT YL+ +Y PG ++ HAAAGG G L CQ AK GA++IG AEKA
Sbjct: 95622 AVMLKGLTVQYLLKQTYEVKPGDVILFHAAAGGVGSLACQWAKALGAKLIGTVSSAEKAE 95443
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
A ++G + IDY ++ K VYDGVG T+
Sbjct: 95442 RAKALGAWE-TIDYSHEDVAKRVLELTDGKKCPVVYDGVGADTW 95314
Score = 94.0 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 65/165 (39%), Positives = 96/165 (58%), Gaps = 1/165 (0%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V VG GV++ +G RV Y G + G+Y ++ A+AL+++P+ + AA
Sbjct: 3169646 GVEAAGVVEAVGEGVTQVGVGDRVTYTGFLNTLGAYCTERLIPAAALIKLPETIAFETAA 3169467
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A+ +GLT+ YL+ Y PG +V++HAAAGG GL+V Q A+L G VIG KA
Sbjct: 3169466 AMTMRGLTSAYLLRRLYAFKPGDSVLLHAAAGGVGLIVAQWARLLGLNVIGTVSTEAKAE 3169287
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPK-GVDAVYDGVGQATF 164
+A + G + +I+Y + D VR GV+ V+D VG+ TF
Sbjct: 3169286 VARAHG-CNHIINY-SVEDVASRVRELTDGVGVNVVFDSVGKNTF 3169158
Score = 82.8 bits (203), Expect = 3e-14, Method: Composition-based stats.
Identities = 60/164 (36%), Positives = 91/164 (55%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G EGAG V +G GV +G RVAY +G G+YA+ + A L+ +P + D AA
Sbjct: 2574549 GLEGAGRVTALGDGVRNVQVGDRVAY--AMGPVGAYASGRLFPAERLVNLPPQLEDEAAA 2574722
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
AVL +G+TA YL+ +++ GPG+ V+++ AAG G L+ A+ GA VIG+ +
Sbjct: 2574723 AVLFKGITAQYLLKTTFAVGPGTQVLLYGAAGALGQLMAPWARHLGATVIGVVSRPQSVA 2574902
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
A + G V++ AT + + +GVD VYD VG+ +
Sbjct: 2574903 RAQAAGCQHVLVFDAATLA-SQVRKLTQGQGVDVVYDCVGKVSL 2575031
Score = 61.6 bits (148), Expect = 8e-08, Method: Composition-based stats.
Identities = 61/181 (33%), Positives = 79/181 (43%), Gaps = 19/181 (10%)
Frame = -2
Query: 3 EGAGTVVKVGPGVSETMLGKRV------------------AYFGGVGCTGSYAAFTVVQA 44
+GAG VV VG GV+E +G V A G G G +A
Sbjct: 5339553 DGAGEVVAVGAGVTEFQVGDSVVSTFFPDWLDGQANVEGFAQVPGDGLDGYAREQVTARA 5339374
Query: 45 SALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKL 104
+A P G + A+AA + GLTA + S PG TV+V GG + Q AKL
Sbjct: 5339373 TAFTLAPKGFSHAEAATLTTAGLTAWRALMSDDHLKPGDTVLVQ-GTGGVSIFALQFAKL 5339197
Query: 105 RGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRA-AAPKGVDAVYDGVGQAT 163
GA VI K ++G AD +I+Y +TP W VR +GVD V + G AT
Sbjct: 5339196 AGATVIATSSSDAKLERLKALG-ADHLINYKSTPAWGEKVRELTGNRGVDHVIEVGGPAT 5339020
Query: 164 F 164
Sbjct: 5339019 L 5339017
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 45/102 (44%), Positives = 58/102 (56%), Gaps = 1/102 (0%)
Frame = -2
Query: 60 AAVLCQGLTAHY-LVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEK 118
+A+ G+TA++ L+D P G TVV+ AAG G +V Q+AK++G RV+GI GGAEK
Sbjct: 1567824 SALGMTGMTAYFALLDVGQP-KAGDTVVISGAAGAVGSIVGQIAKVKGCRVVGIAGGAEK 1567648
Query: 119 AMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
D VIDY A L R PKGVD +D VG
Sbjct: 1567647 CRYLLDELGFDGVIDYKAEDVLAGLKR-ECPKGVDVYFDNVG 1567525
Score = 60.1 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 53/164 (32%), Positives = 73/164 (44%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V VG +G RV G G++A V +L +P + AA
Sbjct: 5889172 GGEAAGVVAAVGEKAGTFKVGDRVMALTG---WGAFAEQVAVPFYNVLPIPASMDFTTAA 5889342
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A T+ + + G T++V A+GG GL ++ K GARVI AEK
Sbjct: 5889343 AFGMTYGTSMHALRQRGQLQAGETLLVLGASGGVGLAAVEIGKAMGARVIAAASSAEKLA 5889522
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
+A + G AD +IDY + R +GVD +YD VG F
Sbjct: 5889523 VAKAAG-ADELIDYSQASLREEIKRLTGGQGVDVIYDPVGGELF 5889651
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 46/142 (32%), Positives = 67/142 (47%), Gaps = 5/142 (3%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G + G V +VGP V+ G V Y G + GSY+ F VV + P + +A AA
Sbjct: 3425409 GWDAVGVVREVGPEVTLFRPGDEVFYAGAIDRPGSYSEFHVVDERIVGHKPRSLDNASAA 3425588
Query: 61 AVLCQGLTAHYLVDSSYPC----GPGSTVVVHAAAGGTGLLVCQMA-KLRGARVIGICGG 115
A+ +TA L+ G G +++V AAGG G ++ Q+A KL VIG
Sbjct: 3425589 ALPLTSITAWELLFDRLGVEENGGQGQSLLVIGAAGGVGSILVQLASKLTQLTVIGTASR 3425768
Query: 116 AEKAMLATSVGRADVVIDYVAT 137
E ++G A VID+ +
Sbjct: 3425769 PETQAWVKALG-AHHVIDHTES 3425831
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 48/147 (32%), Positives = 72/147 (48%), Gaps = 1/147 (0%)
Frame = -1
Query: 17 ETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSS 76
E LG RVAY + GS+A ++ AS ++ +P ++D+ AAAV C LTA + +
Sbjct: 2275171 ELPLGSRVAYHQSLARDGSFAEHCLLDASLVMHIPSALSDSAAAAVPCPALTA-WQALAK 2274995
Query: 77 YPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVA 136
P G V+V A G G + Q+A RG RV A L ++G + V DY
Sbjct: 2274994 IPAGTSRDVLVIGAGGAVGFYLAQLAAQRGLRVWATASQRHHAAL-KALGTSG-VFDY-H 2274824
Query: 137 TPDWPPLVRAA-APKGVDAVYDGVGQA 162
DW ++ A + + A++D V A
Sbjct: 2274823 DADWQQQLQVALGERPLHALFDTVSGA 2274743
Score = 45.8 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 46/158 (29%), Positives = 70/158 (44%), Gaps = 25/158 (15%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKR--VAYF-----------------------GGVGCTGS 35
G EG G V +VGPGV+ G R VA+F G G
Sbjct: 3954477 GHEGIGVVQEVGPGVTSLKPGDRASVAWFYQGCGHCEYCNSGNETLCREVKNSGYTVDGG 3954656
Query: 36 YAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTG 95
A +VQA ++VPDG+ A A+++ C G+T + V S PG + ++ G
Sbjct: 3954657 MAEACIVQADYSVKVPDGLDSAAASSITCAGVTTYKAVKIS-NIRPGQWIAIYGLGGLGN 3954833
Query: 96 LLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVID 133
L + + A+VI I E+ A+ +G AD+V++
Sbjct: 3954834 LALQYAKNVFNAKVIAIDVNEEQLRFASEMG-ADLVVN 3954944
Score = 40.4 bits (93), Expect = 0.21, Method: Composition-based stats.
Identities = 41/132 (31%), Positives = 63/132 (47%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V +VG G ++ +G RV + +G+ A VV A +L VP+G++ +AA
Sbjct: 1467247 GLECAGVVEEVGAG-ADWRVGDRVC---ALLASGAMAEEVVVDARHVLPVPEGLSLQEAA 1467414
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A+ TA + G V+VHA A G G Q+ K G+ V G ++
Sbjct: 1467415 ALPEVYATAWLNIFQLGAVKAGEKVLVHAGASGVGSAAIQLCKAFGSPVWVSVGSQDRLA 1467594
Query: 121 LATSVGRADVVI 132
++G A V+
Sbjct: 1467595 YCQALGAAGGVV 1467630
>gb|CP000494.1| Bradyrhizobium sp. BTAi1, complete genome
Length = 8264687
Score = 102 bits (255), Expect = 3e-20, Method: Composition-based stats.
Identities = 68/164 (41%), Positives = 95/164 (57%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G EGAG V ++G GV++ +G RVAY G G+Y+ ++ A+ LL++PDG+ D AA
Sbjct: 6077268 GSEGAGVVEELGEGVTDLKVGDRVAY--GSSPLGAYSEARLIPAAQLLKLPDGIDDKTAA 6077095
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A++ +GLT YL+ +Y G T+++HAAAGG GL++ Q AK GA VIG EKA
Sbjct: 6077094 AMMLKGLTVQYLIRQTYRVKAGETILLHAAAGGVGLILSQWAKHLGASVIGTVSSDEKAE 6076915
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
A + G D I Y + A + V VYD VG+ TF
Sbjct: 6076914 QARAHG-CDHTIVYSREDFVARVGEITAGRKVPVVYDSVGKDTF 6076786
Score = 101 bits (252), Expect = 6e-20, Method: Composition-based stats.
Identities = 67/168 (39%), Positives = 95/168 (56%), Gaps = 4/168 (2%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V+ VGPGV+ G RVAY+ +G YA + L+++PD +T Q A
Sbjct: 4353339 GNEAAGEVIAVGPGVTHFHPGDRVAYYENLG---GYATERNIAWQRLVKLPDHITYEQGA 4353169
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
++ +GLT YL+ ++ P V++HAAAGG GLL CQ A+ GA VIG G KA
Sbjct: 4353168 VLMLKGLTVWYLLHKTFKVEPHHRVLIHAAAGGIGLLACQWARALGAHVIGTVGSRAKAD 4352989
Query: 121 LATSVGRADVVI----DYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
LA + G V++ D+VA + + + + D VYDGVG++TF
Sbjct: 4352988 LALANGCDHVILYNEEDFVAR-----VKQISRGELCDVVYDGVGKSTF 4352860
Score = 97.1 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 69/166 (41%), Positives = 99/166 (59%), Gaps = 1/166 (0%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V G V+ +G RVAY GG G+YA+ + A + +PD V+DA+AA
Sbjct: 7722557 GVEAAGIVTAKGSDVTGLSVGDRVAYAGGPA--GAYASERNLPAWRAMPLPDSVSDARAA 7722384
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+ L +G+TA L+ +Y GPG+T++VH+AAGG G ++ ++A+LRGA +IG KA
Sbjct: 7722383 STLLKGITAAMLLGRTYVVGPGTTLLVHSAAGGLGQVLTRLARLRGATIIGTVSSEAKAD 7722204
Query: 121 LATSVGRADVVIDYVATPDWPPLVRA-AAPKGVDAVYDGVGQATFA 165
LA + G +++ A D+ VR A +GVD YDGVG T A
Sbjct: 7722203 LARAAGAHHLIVGRDA--DFVDAVRRWTAGRGVDVAYDGVGGRTLA 7722072
Score = 61.6 bits (148), Expect = 9e-08, Method: Composition-based stats.
Identities = 57/181 (31%), Positives = 80/181 (44%), Gaps = 19/181 (10%)
Frame = -3
Query: 3 EGAGTVVKVGPGVSETMLGKRV-------------------AYFGGVGCTGSYAAFTVVQ 43
+GAG V VG GV G+RV A GG G+ + + +
Sbjct: 5594403 DGAGVVEAVGDGVVGVAPGERVIGSFFESWSAGEPSEAKMRAALGG-AVDGTLSEYRIFP 5594227
Query: 44 ASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAK 103
A AL+ P ++D +AA + C G+TA V PG TV+ GG + Q+AK
Sbjct: 5594226 AHALVRTPAHLSDIEAATLPCAGVTAWSAVVKLGGIRPGQTVLTQ-GTGGVSIFALQIAK 5594050
Query: 104 LRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQAT 163
+ GARVI K ++G ADV ++Y +PDW R +GVD V + G T
Sbjct: 5594049 MAGARVIATSSNEAKIARLEALG-ADVTLNYKTSPDWGKKAREITGQGVDLVVEVGGVGT 5593873
Query: 164 F 164
Sbjct: 5593872 L 5593870
Score = 55.5 bits (132), Expect = 6e-06, Method: Composition-based stats.
Identities = 52/161 (32%), Positives = 76/161 (47%), Gaps = 2/161 (1%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V ++GP +G +V G ++A +T+ L P + +AA
Sbjct: 3245069 GMEWAGEVAELGPDAKGLKVGDKVMGSGA----AAFAEYTLADHGRLFHAPSNMNFDEAA 3244902
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGAR-VIGICGGAEKA 119
+ T H V ++ PG V++ A+ G GL+ Q+AKL+GA VIG A +
Sbjct: 3244901 TLPIALTTMHNAVVTNGALQPGQRVLIQGASSGVGLMAMQIAKLKGASLVIGSSTDATRR 3244722
Query: 120 MLATSVGRADVVIDYVATPDWPPLVR-AAAPKGVDAVYDGV 159
G AD+ ID + P W VR A A +GVD + D V
Sbjct: 3244721 ARLAEFG-ADLAID-SSDPAWVDQVREATAGEGVDLIVDQV 3244605
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 55/161 (34%), Positives = 78/161 (48%), Gaps = 1/161 (0%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVT-DAQA 59
G E AG + VG GV++ G RV G G+ + A+A++++PD + D A
Sbjct: 251737 GAEVAGVIESVGEGVTDLKAGDRVV--ASCGHNGARQKIAL-PAAAIVKIPDNLDFDRAA 251907
Query: 60 AAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKA 119
++ G H L D + P PG T+ V AAGGTGL C++ KL G +VI EK
Sbjct: 251908 GIIIIYGTALHALEDRASP-KPGETLAVLGAAGGTGLAACELGKLMGLKVIACASSDEKL 252084
Query: 120 MLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
A G A + ++Y L R KG D ++D VG
Sbjct: 252085 EFARQHG-ATLTLNYAKEDLKEGLRRLTDGKGADIIFDPVG 252204
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 46/167 (27%), Positives = 78/167 (46%), Gaps = 2/167 (1%)
Frame = -2
Query: 1 GEEGAGTVVKVGPG-VSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQA 59
G EGAGTVVK G ++ ++G+ VA GG Y+ + ++ S L +P G T A+
Sbjct: 4682887 GNEGAGTVVKTGSSEAAKALMGRTVAAIGG----AMYSQYRCLKISECLPLPTGTTAAEG 4682720
Query: 60 AAVLCQGLTAHYLVDSSYPCGPGSTVVVH-AAAGGTGLLVCQMAKLRGARVIGICGGAEK 118
A+ LT+ + ++ G T +VH AAA G ++ ++ G ++ I A +
Sbjct: 4682719 ASCFVNPLTSLGMTETMRR--EGHTALVHTAAASNLGQMLNKICLKDGIPLVNIVRSAAQ 4682546
Query: 119 AMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATFA 165
A + +G A ++D + L+ A G +D +G A
Sbjct: 4682545 AEILRGIG-ATYIVDSTSPTFMDELIAALVETGATIAFDAIGGGKLA 4682408
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 42/100 (42%), Positives = 58/100 (58%), Gaps = 1/100 (1%)
Frame = +1
Query: 66 GLTAHY-LVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATS 124
G+TA+ L+D P PG TVVV AA+G G V Q+AK++GAR IGI GG +K +
Sbjct: 3780286 GMTAYTGLLDIGQP-KPGETVVVAAASGAVGSAVGQIAKIKGARAIGIAGGKDKCDYVKN 3780462
Query: 125 VGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
D +D+ PD ++AA PKG+D ++ VG F
Sbjct: 3780463 EFGFDDCLDH-RDPDLAAKLKAACPKGIDVYFENVGGPVF 3780579
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 43/140 (30%), Positives = 66/140 (47%), Gaps = 6/140 (4%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G + AG V VGP V+ G V Y G + G+ A F +V + P ++ A+AA
Sbjct: 5268704 GYDAAGVVEAVGPEVTLFKAGDEVFYAGSILRQGTNAEFHLVDERIVGRKPKTLSFAEAA 5268883
Query: 61 AVLCQGLTAHYLVDSSYPCGPGS-----TVVVHAAAGGTGLLVCQMA-KLRGARVIGICG 114
A+ +TA L+ PG T+++ AAGG G ++ Q+A +L G V+
Sbjct: 5268884 ALPLTSITAWELLFDRLGAVPGKSLDDRTLLITGAAGGVGSILIQLARRLTGLTVLATAT 5269063
Query: 115 GAEKAMLATSVGRADVVIDY 134
E S+G A V+D+
Sbjct: 5269064 RPESRDWCLSLG-AHAVVDH 5269120
Score = 39.7 bits (91), Expect = 0.30, Method: Composition-based stats.
Identities = 52/164 (31%), Positives = 72/164 (43%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V++ G V+ +G RV G A Q + L P A+ A
Sbjct: 5492901 GVEAAGDVIETGTAVTGRSVGDRVIVRMRFGAYAEEAVVAARQLTPL---PSTFDYAEGA 5492731
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
L TA++ + G T++VH A GG GL ++ KL GA VI EK
Sbjct: 5492730 TYLAGHGTAYHALVDRGQLRSGETLLVHGAGGGVGLAAVELGKLLGATVIAAASSEEKLA 5492551
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
+A + G AD ++ Y P + R +GVD V+D VG F
Sbjct: 5492550 VARARG-ADHLVLYAREPFRDAVKRITDGRGVDVVFDPVGGEVF 5492422
Score = 35.8 bits (81), Expect = 5.1, Method: Composition-based stats.
Identities = 49/186 (26%), Positives = 71/186 (38%), Gaps = 47/186 (25%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRV------------------------AYFGGVGCTGSY 36
G E AG V VGPGV +G V + F G+ G Y
Sbjct: 3794138 GHENAGWVEAVGPGVEGVKVGDSVICHPLVTSGHCLACRRGNDMHALDSSFPGINANGGY 3794317
Query: 37 AAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLV-DSSYPCGPGSTVVVHAAAGGTG 95
A + + +L+++P + A GLTA+ +S PG VV A G
Sbjct: 3794318 AQYLLTGQRSLIKLPKSLAPKDVAPYTDAGLTAYRAAKKASRHLLPGEYAVVIGAGGLGH 3794497
Query: 96 LLVCQMAKLRGARVIGI------------C---------GGAEKAMLATSVGR-ADVVID 133
+ + +A L A +I + C GG +A+LA + GR A+ VID
Sbjct: 3794498 IGIQVLAALCAAEIIVVDRSDKSLELAKTCGAHHLVKADGGEVEAVLALTGGRGAEAVID 3794677
Query: 134 YVATPD 139
+V D
Sbjct: 3794678 FVGEGD 3794695
>ref|XM_001906460.1| Podospora anserina DSM 980 hypothetical protein (PODANSg3526)
partial mRNA
Length = 975
Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats.
Identities = 73/169 (43%), Positives = 92/169 (54%), Gaps = 5/169 (2%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETML--GKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQ 58
G E AGTVV +GP E L G RV + G YA ++ V A+ L++PD V+
Sbjct: 199 GREAAGTVVALGPKTEEFNLKVGDRVIWLANAG----YAEYSAVPAAKTLKLPDTVSYED 366
Query: 59 AAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEK 118
A A GLT L +Y PG V++HAAAGG G L+ Q+ K GA+VIG GG EK
Sbjct: 367 ATASFMSGLTVLALARETYTVQPGDWVLLHAAAGGAGFLMTQLLKHVGAKVIGTAGGPEK 546
Query: 119 AMLATSVGRADVVIDYVAT--PDWPPLVR-AAAPKGVDAVYDGVGQATF 164
L S+G AD VIDY + DW V +GVD VYD VG+ T+
Sbjct: 547 VELVKSLG-ADHVIDYRSEEGKDWVKTVMDITGGRGVDVVYDSVGKDTW 690
>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome
Length = 4406967
Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats.
Identities = 69/168 (41%), Positives = 95/168 (56%), Gaps = 4/168 (2%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V VGPGV++ G RVAY+ +G +YA A L+++PD +T Q A
Sbjct: 2266920 GNEAAGEVAAVGPGVTDFHPGDRVAYYVNLG---AYATERNAPADKLVKLPDHITYEQGA 2266750
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
++ +GLT YL+ ++ G V++HAAAGG GLL CQ AK GA VIG G KA
Sbjct: 2266749 VLMLKGLTVWYLLHKTFKVEQGHRVLIHAAAGGIGLLACQWAKALGANVIGTVGSKAKAD 2266570
Query: 121 LATSVGRADVVI----DYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
LA + G V++ D+VA + + + + D VYDGVG+ TF
Sbjct: 2266569 LALANGCDHVILYKDEDFVAR-----VKQISRNELCDVVYDGVGKTTF 2266441
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence
Length = 3716413
Score = 102 bits (253), Expect = 5e-20, Method: Composition-based stats.
Identities = 71/165 (43%), Positives = 89/165 (53%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E +G V VG GV+ G RVAY G TG+YA + A L+ +P+ + A
Sbjct: 2367563 GMEASGVVEAVGEGVTHVRPGDRVAYAGRP--TGAYAEVRTMPADILVRLPEAIGFETGA 2367390
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A++ QGLTA YL+ SY PG TV+ HAAAGG GL+ CQ K GA VIG G KA
Sbjct: 2367389 AMMLQGLTAQYLLRDSYRVQPGDTVLFHAAAGGVGLIACQWLKALGATVIGTVGSDAKAA 2367210
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATFA 165
LA + G D I Y + KGV VYDG+G+ TF+
Sbjct: 2367209 LARAHG-CDHTIVYTRENFTERVREITGGKGVPVVYDGIGKDTFS 2367078
Score = 59.7 bits (143), Expect = 3e-07, Method: Composition-based stats.
Identities = 38/98 (38%), Positives = 53/98 (54%), Gaps = 3/98 (3%)
Frame = +2
Query: 66 GLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSV 125
G+TA Y ++ PG TV V AA+G G +V Q+AKL+G R +G GG +K +
Sbjct: 1893575 GVTAWYGLNRIMHPKPGQTVAVSAASGAVGSVVGQLAKLKGCRAVGFAGGKDKCDYVVNE 1893754
Query: 126 GRADVVIDYVATPDWPPL---VRAAAPKGVDAVYDGVG 160
D IDY A D L ++ A P G+DA ++ VG
Sbjct: 1893755 LGFDACIDYKAAKDPKELYAMLKEATPDGIDAYFENVG 1893868
Score = 52.0 bits (123), Expect = 7e-05, Method: Composition-based stats.
Identities = 58/161 (36%), Positives = 76/161 (47%), Gaps = 1/161 (0%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVT-DAQA 59
G E AG V VG GVS G V F G G++A+ A ++ +P G+ D A
Sbjct: 1272528 GSELAGVVRAVGDGVSHVKAGDPVIAFLG---QGAFASQVKAPAKMVMPMPPGMAFDTAA 1272358
Query: 60 AAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKA 119
A L G + H +VD PG T++V AAGG GL ++ K GARVI EK
Sbjct: 1272357 AFTLTYGTSHHAVVDRG-QLRPGETMLVLGAAGGVGLAAIEIGKAIGARVIAAASSDEKL 1272181
Query: 120 MLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
+ G AD +I+Y A + KG D +YD VG
Sbjct: 1272180 AVCREHG-ADALINYAAEDLRERIKALTDGKGPDVIYDPVG 1272061
Score = 48.1 bits (113), Expect = 8e-04, Method: Composition-based stats.
Identities = 43/137 (31%), Positives = 60/137 (43%), Gaps = 5/137 (3%)
Frame = -2
Query: 34 GSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGS-----TVVVH 88
G YA F +L VP G++D +AAA+ T V G G+ T++V
Sbjct: 2238339 GGYAEFCTAPLGQVLPVPAGLSDIEAAALPENYFTVWSNVFDRGQLGQGAHGKGETLLVQ 2238160
Query: 89 AAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAA 148
+ G G QMA G RV G EK ++G A + T D+ +V+A
Sbjct: 2238159 GGSSGIGTTAIQMASALGYRVFATAGSDEKCAACVALGAARAI--RYRTEDFAEVVKAET 2237986
Query: 149 PKGVDAVYDGVGQATFA 165
+GVD V D VG + A
Sbjct: 2237985 GRGVDVVLDMVGGSYVA 2237935
Score = 44.7 bits (104), Expect = 0.011, Method: Composition-based stats.
Identities = 34/104 (32%), Positives = 51/104 (49%)
Frame = -1
Query: 34 GSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGG 93
G Y+ VV +L +P+G+ A AA +LC G+T + + GPGS V V GG
Sbjct: 679708 GGYSNTLVVSDKFVLSIPNGLDPAGAAPLLCAGITTWEPL-HQWKVGPGSQVAV-VGLGG 679535
Query: 94 TGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVAT 137
G + ++AK GA V + K + A +G VV+ A+
Sbjct: 679534 LGHMALKLAKALGAEVTLLTRSPNKELDARRLGANHVVLSTDAS 679403
Score = 36.2 bits (82), Expect = 4.1, Method: Composition-based stats.
Identities = 31/95 (32%), Positives = 36/95 (37%), Gaps = 25/95 (26%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAY-------------------------FGGVGCTGS 35
G E GTV GPGVS G+RV F G G
Sbjct: 1611337 GHEIVGTVDACGPGVSGLTTGERVGVPWLGWSCGTCPFCRRDQENLCDRPRFTGYTRDGG 1611158
Query: 36 YAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAH 70
YA +TV A L +P DA AA +LC GL +
Sbjct: 1611157 YAEYTVCDARYCLPIPARYDDAHAAPLLCAGLIGY 1611053
>gb|CP000578.1| Rhodobacter sphaeroides ATCC 17029 chromosome 2, complete sequence
Length = 1219053
Score = 102 bits (253), Expect = 5e-20, Method: Composition-based stats.
Identities = 72/164 (43%), Positives = 94/164 (57%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V ++G GVS G RVAY G+ V+ A L+ +P+GVTD AA
Sbjct: 35576 GGEAAGVVEELGEGVSGFAPGDRVAY---TMPNGACRTARVLPADRLVRLPEGVTDEVAA 35406
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+++ +GLTAHYL+ SS+ G V+VHAAAGG G L+ Q K +GA G GGA KA
Sbjct: 35405 SIMLKGLTAHYLIHSSFRVEAGHHVLVHAAAGGVGQLLGQWLKAKGAITYGTVGGAAKAE 35226
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
+A + G D VIDY AT + +G D VYD VG+ T+
Sbjct: 35225 MARASG-FDHVIDYEATEFAEAVRELTGGRGCDVVYDSVGRTTW 35097
Score = 60.8 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 35/80 (43%), Positives = 47/80 (58%)
Frame = +1
Query: 81 PGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDW 140
PG TVVV AA+G G V Q+AKL+G R +G+ GGA+K D ID+ A PD+
Sbjct: 210808 PGETVVVAAASGPVGATVGQIAKLKGCRAVGVAGGADKCRYVVETLGFDACIDHRA-PDF 210984
Query: 141 PPLVRAAAPKGVDAVYDGVG 160
+ AA P G+D ++ VG
Sbjct: 210985 EAQLAAACPNGIDIYFENVG 211044
Score = 38.5 bits (88), Expect = 0.70, Method: Composition-based stats.
Identities = 33/102 (32%), Positives = 48/102 (47%), Gaps = 4/102 (3%)
Frame = +2
Query: 34 GSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCG---PGS-TVVVHA 89
G Y+ + V+A L +P+G T A+A A+ G TA V + G PG V+V
Sbjct: 730514 GGYSRYQSVKAGHLTRLPEGFTPAEAMAIGTAGYTAALCVLALEDWGTIAPGQGEVLVTG 730693
Query: 90 AAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVV 131
AAGG G + + RG RV+ G + +G +D V
Sbjct: 730694 AAGGVGSVAVALLAARGYRVVAATGRESQHDFLRGLGASDFV 730819
>gb|CP001151.1| Rhodobacter sphaeroides KD131 chromosome 2, complete sequence
Length = 1297647
Score = 102 bits (253), Expect = 5e-20, Method: Composition-based stats.
Identities = 71/164 (43%), Positives = 95/164 (57%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V ++G GV+ G RVAY G+ V+ A L+ +P+GVTD AA
Sbjct: 463424 GGEAAGVVEELGEGVTGFAPGDRVAY---TMPNGACRTARVLPADRLVRLPEGVTDEVAA 463254
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+++ +GLTAHYL+ SS+ G V+VHAAAGG G L+ Q K +GA G GGA+KA
Sbjct: 463253 SIMLKGLTAHYLIHSSFRVEAGHYVLVHAAAGGVGQLLGQWLKAKGAITYGTVGGADKAE 463074
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
+A + G D VIDY AT + +G D VYD VG+ T+
Sbjct: 463073 MARASG-FDHVIDYEATDFAEAVRELTGGRGCDVVYDSVGRTTW 462945
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 35/80 (43%), Positives = 47/80 (58%)
Frame = +2
Query: 81 PGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDW 140
PG TVVV AA+G G V Q+AKL+G R +G+ GGA+K D ID+ A PD+
Sbjct: 639071 PGETVVVAAASGPVGATVGQIAKLKGCRAVGVAGGADKCRYVVETLGFDACIDHRA-PDF 639247
Query: 141 PPLVRAAAPKGVDAVYDGVG 160
+ AA P G+D ++ VG
Sbjct: 639248 EAQLAAACPDGIDVYFENVG 639307
Score = 38.5 bits (88), Expect = 0.70, Method: Composition-based stats.
Identities = 33/102 (32%), Positives = 48/102 (47%), Gaps = 4/102 (3%)
Frame = +2
Query: 34 GSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCG---PGS-TVVVHA 89
G Y+ + V+A L +P+G T A+A A+ G TA V + G PG V+V
Sbjct: 1271030 GGYSRYQSVKAGHLTRLPEGFTPAEAMAIGTAGYTAALCVLALEDWGTIAPGQGEVLVTG 1271209
Query: 90 AAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVV 131
AAGG G + + RG RV+ G + +G +D V
Sbjct: 1271210 AAGGVGSVAVALLAARGYRVVAATGRESQHDFLRGLGASDFV 1271335
>gb|CP000749.1| Marinomonas sp. MWYL1, complete genome
Length = 5100344
Score = 102 bits (253), Expect = 5e-20, Method: Composition-based stats.
Identities = 66/164 (40%), Positives = 90/164 (54%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G EGAG V+ VG V +G+RVA+ V GSYA + AS+L+ +PD + D AA
Sbjct: 2801081 GVEGAGRVLAVGDEVKNFDIGQRVAW---VYAPGSYAEKISIPASSLVHIPDDIDDKTAA 2801251
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+++ QGLTA + YP G VHAA+GG GLL+ Q+ KL G +VIG A K
Sbjct: 2801252 SLMMQGLTASHFATDFYPIQTGDIAFVHAASGGVGLLLTQIIKLHGGKVIGRVSSASKVA 2801431
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
A + G V++D L R + +GV V+DG G +TF
Sbjct: 2801432 TAKAAGADHVIVDTEGKFAEEAL-RLSGGEGVHVVFDGSGPSTF 2801560
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 41/132 (31%), Positives = 61/132 (46%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G +GAGT+V++G V+ +G+RV YF TGS A F A+ + D ++ + A
Sbjct: 5030963 GSDGAGTIVELGANVTGFEVGQRV-YFSR-NLTGSSAEFAACAATHTYPLADALSFEEGA 5031136
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
V TAH + G V+VH A G G+ Q+A G V+ G A A
Sbjct: 5031137 CVGIPYTTAHRALFGRANGKAGDKVLVHGATGAVGIATVQLALAAGMEVVASSGTAAGAD 5031316
Query: 121 LATSVGRADVVI 132
L G +++
Sbjct: 5031317 LLRQQGVKTIIM 5031352
Score = 49.3 bits (116), Expect = 4e-04, Method: Composition-based stats.
Identities = 44/151 (29%), Positives = 62/151 (41%), Gaps = 25/151 (16%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAY-------------------------FGGVGCTGS 35
G EG G +V+VG V LG RV G G
Sbjct: 276932 GHEGVGEIVEVGSAVKHLALGDRVGIPWLYSACGHCEYCLTGNENLCLSQQNAGYSVDGG 276753
Query: 36 YAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTG 95
YA + A +++VP+G+ +AA + C G+T + + S PG V + GG G
Sbjct: 276752 YAEYCAAHAEYVVKVPEGLGYVEAAPLFCAGVTTYKALKVS-GAKPGDWVALF-GVGGLG 276579
Query: 96 LLVCQMAKLRGARVIGICGGAEKAMLATSVG 126
L Q A G RV+ + G+ K LA S+G
Sbjct: 276578 HLAVQYAVAMGFRVVAVDTGSAKRELAMSLG 276486
Score = 48.1 bits (113), Expect = 8e-04, Method: Composition-based stats.
Identities = 35/105 (33%), Positives = 51/105 (48%)
Frame = -2
Query: 56 DAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGG 115
+A + + G+TA++ V G T++V AAAG G LV QMAK G V+G+ G
Sbjct: 999196 EAILSVIALPGITAYHGVFEVLKPEAGQTLIVTAAAGSVGSLVGQMAKNLGLTVVGVAGS 999017
Query: 116 AEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
EK T D I+Y D+ + A P G+D ++ G
Sbjct: 999016 DEKCQWLTKELGFDHAINY-KDADFIEQLTNATPNGIDLFFENTG 998885
Score = 45.1 bits (105), Expect = 0.009, Method: Composition-based stats.
Identities = 45/158 (28%), Positives = 69/158 (43%), Gaps = 25/158 (15%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRV-------------------------AYFGGVGCTGS 35
G EG G VV +G GV+ G RV A FGG G
Sbjct: 2231254 GHEGIGIVVALGEGVTAVKEGDRVGVPWLYSACGHCEHCLAAWETVCGEAEFGGYTKNGG 2231075
Query: 36 YAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTG 95
+A + + + + +P G++ +AA ++C G+T + + + PG VV+ + GG G
Sbjct: 2231074 FAEYILANPNYVAHIPAGLSATEAAPLICAGITTYKGLKET-KAKPGDWVVI-SGIGGLG 2230901
Query: 96 LLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVID 133
L Q AK G V + +K AT +G AD V++
Sbjct: 2230900 HLAVQYAKAMGLHVCAVDIDDKKLEHATQLG-ADAVVN 2230790
Score = 43.5 bits (101), Expect = 0.026, Method: Composition-based stats.
Identities = 47/156 (30%), Positives = 66/156 (42%), Gaps = 25/156 (16%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGC------------------------TGSY 36
G E +G V VG GV+ +G +V + C G +
Sbjct: 43342 GHEFSGVVAAVGEGVTHVKIGDKVCVDPVISCGECYACRAGRFNVCAKLQVFGVHRNGGF 43521
Query: 37 AAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGL 96
FT AS +L +PD VT QAA V + + L S PG T++V+ AG GL
Sbjct: 43522 GEFTSAPASNVLVLPDNVTLEQAALVEPYSIATNVL--SRMEPIPGDTLLVY-GAGVIGL 43692
Query: 97 LVCQMAKLRG-ARVIGICGGAEKAMLATSVGRADVV 131
+ Q+AK G R+I E+ A S+G DV+
Sbjct: 43693 TIVQVAKAMGIERIIVTDIVDERLETAKSLGATDVI 43800
Score = 36.2 bits (82), Expect = 3.9, Method: Composition-based stats.
Identities = 37/123 (30%), Positives = 51/123 (41%), Gaps = 2/123 (1%)
Frame = +2
Query: 6 GTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA--AVL 63
G + VG G +G RV G +A V + + ++PD VTD +A+ V
Sbjct: 891011 GVIDSVGKGADHFKVGDRVV------SNGPHADVVRVAKNLVAKIPDNVTDEEASFTVVA 891172
Query: 64 CQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLAT 123
GL L + + G VV G GLL QM + +G RV+ I K LA
Sbjct: 891173 SIGLQGIRLANPTM----GECFVV-TGVGLIGLLTVQMLRAQGCRVLAIDFDQSKLELAK 891337
Query: 124 SVG 126
G
Sbjct: 891338 QFG 891346
>ref|XM_002326495.1| Populus trichocarpa predicted protein, mRNA
Length = 1266
Score = 102 bits (253), Expect = 6e-20, Method: Composition-based stats.
Identities = 65/168 (38%), Positives = 93/168 (55%), Gaps = 4/168 (2%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E G V+ VGPG++ +G VAY G GSYA ++ A+ ++ VP+ ++ AA
Sbjct: 342 GREAVGEVIAVGPGLTGRKVGDVVAYAGDP--MGSYAEEQILPANKVVSVPESISPVIAA 515
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+V+ +G+T +L+ + PG T++VHAAAGG G L+CQ A GA VIG EKA
Sbjct: 516 SVMLKGMTTQFLLRRCFKVEPGHTILVHAAAGGVGSLLCQWANALGATVIGTVSTKEKAA 695
Query: 121 LATSVGRADVVI----DYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
A G V++ D+VA + + GVD VYD VG+ TF
Sbjct: 696 QAKEDGCQHVILYQEEDFVARVN-----EITSCNGVDVVYDSVGKDTF 824
>gb|CP000463.1| Rhodopseudomonas palustris BisA53, complete genome
Length = 5505494
Score = 101 bits (251), Expect = 8e-20, Method: Composition-based stats.
Identities = 68/164 (41%), Positives = 93/164 (56%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG VV VG GV+ G RVAY+ +G +YA + A L+++PD +T Q A
Sbjct: 3151027 GNEAAGEVVAVGSGVTNFHPGDRVAYYSNLG---AYATERNIPADKLVKLPDHITYEQGA 3151197
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
++ +GLT YL+ ++ PG ++VHAAAGG GLL+CQ AK GA VIG G KA
Sbjct: 3151198 VLMLKGLTVWYLLHKTFKVEPGHRILVHAAAGGVGLLMCQWAKAMGAHVIGTVGSKAKAE 3151377
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
+A + G D I Y + + + + D VYDGVG+ TF
Sbjct: 3151378 MAEAAG-CDHAIVYTEEDFVARVKQISRNELCDVVYDGVGKTTF 3151506
Score = 62.8 bits (151), Expect = 3e-08, Method: Composition-based stats.
Identities = 60/157 (38%), Positives = 79/157 (50%), Gaps = 5/157 (3%)
Frame = +3
Query: 9 VKVGPGVSETMLGKRVAYFGG---VGCTGSYAAFTVVQASALLEVPDGVTDAQAAAVL-C 64
V G GV+E + K G G TG + F+ V A L ++P +V
Sbjct: 131070 VMAGGGVAEVVSSKAPGLAAGDLVFGDTG-WQEFSAVPARELSKLPKLEPMTHLLSVYGI 131246
Query: 65 QGLTAHY-LVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLAT 123
GLTA++ L+D P G TVVV AAAG G +V Q+AK++G RV+GI GG EK T
Sbjct: 131247 AGLTAYFGLLDVGQP-KAGETVVVSAAAGSVGSIVGQIAKIKGCRVVGIAGGQEKCDWLT 131423
Query: 124 SVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
D +DY + L R AAP G+D +D VG
Sbjct: 131424 GELGFDAAVDYKDGALFKAL-RKAAPDGIDVYFDNVG 131531
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 56/189 (29%), Positives = 77/189 (40%), Gaps = 25/189 (13%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGC----------------TGSYAAFTV--- 41
G E AGT+ VG GV+ +G++VA +G C G F V
Sbjct: 2234074 GAEAAGTIAAVGDGVTRFKVGQKVAMYGAQTCGHCKPCLEGRDNFCENVGGLIGFHVDGF 2233895
Query: 42 ------VQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTG 95
+ ++ VPD V+ AA T +++ + PG TV+VHA G G
Sbjct: 2233894 ARELLNMPERLVIPVPDNVSVRDAACAPIAFSTVQHMLFDNAKLQPGETVLVHAGGSGIG 2233715
Query: 96 LLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAV 155
+ MAK G VI G K +G AD VI+Y + KGVD V
Sbjct: 2233714 TVAIMMAKAIGCTVITTVGDDSKIEGVKKLG-ADHVINYRTDRFEHETRKITKKKGVDVV 2233538
Query: 156 YDGVGQATF 164
++ VG TF
Sbjct: 2233537 FEHVGADTF 2233511
Score = 58.5 bits (140), Expect = 7e-07, Method: Composition-based stats.
Identities = 54/159 (33%), Positives = 80/159 (50%), Gaps = 1/159 (0%)
Frame = +2
Query: 3 EGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVT-DAQAAA 61
E AG + VG GV++ +G RV G G+ + A++++++PD + D A
Sbjct: 44216 EVAGVIESVGEGVTDLKVGDRVV--ASCGYNGAREKIAL-PAASIVKIPDHLNFDRAAGI 44386
Query: 62 VLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAML 121
++ G H L D + P PG T+ V AAGGTGL C++ KL G +VI EK
Sbjct: 44387 IITYGTALHALEDRASP-KPGETLAVLGAAGGTGLAACELGKLMGLKVIACASSDEKLEF 44563
Query: 122 ATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
A G A++ ++Y L R KGVD ++D VG
Sbjct: 44564 AKQHG-AELTLNYTKEDLKEGLKRLTGGKGVDIIFDPVG 44677
Score = 52.4 bits (124), Expect = 5e-05, Method: Composition-based stats.
Identities = 42/137 (30%), Positives = 62/137 (45%)
Frame = -1
Query: 29 GVGCTGSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVH 88
G C G+ A + V LE+PD + AQ AA+ LTA ++ S PG TV+V
Sbjct: 674834 GEHCDGTMAEYVCVPTENALEIPDSLDFAQGAALGVNYLTAWRMLFSKAKLQPGETVLVF 674655
Query: 89 AAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAA 148
GG Q+AK GARV+ A+KA A + G + ++
Sbjct: 674654 GIGGGVSFAALQIAKAAGARVLVTSRSADKASRARAHGADAAIDAPADKIP-AAVMELTG 674478
Query: 149 PKGVDAVYDGVGQATFA 165
+GVD V + +G A ++
Sbjct: 674477 GRGVDVVIENIGGAMWS 674427
Score = 51.6 bits (122), Expect = 8e-05, Method: Composition-based stats.
Identities = 51/168 (30%), Positives = 79/168 (47%), Gaps = 3/168 (1%)
Frame = +3
Query: 1 GEEGAGTVVKVGPG-VSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQA 59
G EGAGTVVK G ++ + GK VA GG YA F +++A+ L +P G + A
Sbjct: 2881971 GNEGAGTVVKAGASPAAQALAGKTVAMIGG----AMYAQFRLMKAADCLPLPVGASAADG 2882138
Query: 60 AAVLCQGLTAHYLVDSSYPCGPGSTVVVH-AAAGGTGLLVCQMAKLRGARVIGICGGAEK 118
A+ LTA +V++ G T +VH AAA G ++ ++ G ++ I +
Sbjct: 2882139 ASCFVNPLTALGMVETMRR--EGHTALVHTAAASNLGQMLQKICLKDGIALVNIVRSEAQ 2882312
Query: 119 AMLATSVGRADVVIDYVATPDW-PPLVRAAAPKGVDAVYDGVGQATFA 165
A L +G V I +P++ L +A G +D +G A
Sbjct: 2882313 AQLLRDIGARHVCIS--TSPNFMQELTQAMVDSGATIAFDAIGGGKLA 2882450
Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 35/84 (41%), Positives = 49/84 (58%)
Frame = -2
Query: 81 PGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDW 140
PG TVVV AA+G G V Q+AK++GAR +GI GG +K + D +D+ PD
Sbjct: 3651061 PGETVVVAAASGAVGSAVGQIAKIKGARAVGIAGGKDKCDYVVNELGFDACLDH-RDPDL 3650885
Query: 141 PPLVRAAAPKGVDAVYDGVGQATF 164
++ A PKG+D ++ VG A F
Sbjct: 3650884 AAQLKEACPKGIDVYFENVGGAVF 3650813
Score = 45.4 bits (106), Expect = 0.005, Method: Composition-based stats.
Identities = 57/168 (33%), Positives = 76/168 (45%), Gaps = 4/168 (2%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRV---AYFGGVGCTGSYAAFTVVQASALLEVPDGVTDA 57
G E +G V+++G V + +G +V FGG YA VV A L P G
Sbjct: 2548738 GVEVSGEVIEIGEDVRDVAIGAKVIAKMRFGG------YADEVVVDAKQLSPWPAGFDAG 2548899
Query: 58 QAAAVLC-QGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGA 116
+AA L G H LV+ + PG ++VH A GG GL ++ KL GA VI
Sbjct: 2548900 EAATFLAGHGTAWHALVERGH-LQPGEVLLVHGAGGGVGLAAVELGKLLGAEVIATASSD 2549076
Query: 117 EKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
K +A G AD +I Y P + R +G D V+D VG F
Sbjct: 2549077 AKLAMARERG-ADHLIRYDREPFRDAVKRITQNRGADLVFDPVGGEVF 2549217
Score = 44.7 bits (104), Expect = 0.011, Method: Composition-based stats.
Identities = 47/166 (28%), Positives = 72/166 (43%), Gaps = 13/166 (7%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G + AG V VGP V+ G V Y G + G+ A +V + P + AQAA
Sbjct: 3981285 GYDAAGVVDAVGPDVTLFKPGDEVFYAGSILRPGTNAELHLVDERIVGRKPLTLDFAQAA 3981464
Query: 61 AVLCQGLTAHYLVDSSYPCGPGS-----TVVVHAAAGGTGLLVCQMA-KLRGARVIGICG 114
A+ +TA L+ PG T+++ AGG G ++ Q+A +L G V+
Sbjct: 3981465 ALPLTAITAWELLFDRLSVQPGKSFDPRTLLIVGGAGGVGSILIQLARRLTGVSVVATAS 3981644
Query: 115 GAEKAMLATSVGRADVVIDY-------VATPDWPPLVRAAAPKGVD 153
E ++G A VID+ + T PP+ A+ G +
Sbjct: 3981645 RPETTKWCLALG-AHAVIDHTQPMKPQIDTLKLPPVALIASLTGTE 3981779
>gb|CP000685.1| Flavobacterium johnsoniae UW101, complete genome
Length = 6096872
Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 65/160 (40%), Positives = 87/160 (54%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G EGAG VV SE +G RVA+ + A V + +L +P+ ++ AA
Sbjct: 295271 GYEGAGIVVNAN-NHSEYKVGDRVAF---ADAPFANAELVAVNINHVLPLPENISFETAA 295438
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+VL QGLTAHYL S+ G TV++HA AGG G ++ Q++KL GA +IG+ AEKA
Sbjct: 295439 SVLLQGLTAHYLATDSHKTQKGETVLIHAVAGGVGQILTQISKLLGASIIGLTSSAEKAK 295618
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
+ G AD + Y DW V A GVD VYD +G
Sbjct: 295619 VGFDQG-ADHIFLY--NDDWKSQVFKVAANGVDVVYDSIG 295729
Score = 55.1 bits (131), Expect = 7e-06, Method: Composition-based stats.
Identities = 49/164 (29%), Positives = 74/164 (45%), Gaps = 5/164 (3%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G + G V VG V+ +G V Y G + GS A + ++ + P +TDA+AA
Sbjct: 3953454 GWDAVGIVQAVGEKVTLFDVGDLVYYAGDITKQGSNAEYQIIDERIVGNKPTSLTDAEAA 3953275
Query: 61 AVLCQGLTAHYLVDSSYPCGP----GSTVVVHAAAGGTGLLVCQMA-KLRGARVIGICGG 115
A+ GLTA ++ P G ++++ AGG G + Q+A K+ G VI
Sbjct: 3953274 AIPLTGLTAWEILFDRIRINPEKDKGKSILIIGGAGGVGSIAIQLAKKIAGLTVIATASR 3953095
Query: 116 AEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGV 159
E G AD V+D+ + VR A + VD + D V
Sbjct: 3953094 PETIDRCKKQG-ADFVVDH---KNLIESVREAGFQNVDFILDFV 3952975
Score = 51.6 bits (122), Expect = 8e-05, Method: Composition-based stats.
Identities = 41/134 (30%), Positives = 60/134 (44%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G + AG VV+ G VS +G ++ GS+A + V + L P ++ QAA
Sbjct: 3670137 GHDIAGIVVETGSKVSRFKIGDQIYGRAADFHIGSFAEYIAVNENDLAVKPINISMEQAA 3670316
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
++ GLT G V + A +GG G + Q AK GA V M
Sbjct: 3670317 SIPLVGLTVWQAFVEKAKLRKGQKVFIQAGSGGVGTIAIQFAKHLGAFVATTASEKNFDM 3670496
Query: 121 LATSVGRADVVIDY 134
L ++G AD++IDY
Sbjct: 3670497 L-KALG-ADIIIDY 3670532
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 49/90 (54%)
Frame = -1
Query: 31 GCTGSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAA 90
G +G+ A +V+ + ++ +P+G+ DA AAA+ + + PG TV+++ A
Sbjct: 3374627 GISGTIAEKALVEKNRMVVLPEGIDDAVAAAIPNAVAGSAMALRFKAGIQPGETVLINGA 3374448
Query: 91 AGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
G TG + Q+AK GA+ I + G EK +
Sbjct: 3374447 TGFTGQMAIQIAKHYGAKKIIVTGRNEKTL 3374358
Score = 40.0 bits (92), Expect = 0.27, Method: Composition-based stats.
Identities = 35/165 (21%), Positives = 72/165 (43%), Gaps = 3/165 (1%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRV-AYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQA 59
G E +G + +G ++E +G V G +G G+YA + V ++ P ++ +A
Sbjct: 4772420 GREFSGIITAIGTEITEFKIGDAVFCGSGSMGSNGTYAEYICVPEEIAVKKPQNISFEEA 4772241
Query: 60 AAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKA 119
A + GLTA ++ + AAGG G + ++ + + G +++
Sbjct: 4772240 AGIPSAGLTALQSF-KRMNASAADSIFITGAAGGVGNMFIKLLTANSFKKFWVTAGNDES 4772064
Query: 120 MLA-TSVG-RADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQA 162
+ + ++G + + +I+Y + + K D V D VG +
Sbjct: 4772063 IASLINLGVKREQIINYKKENVYETALSLNENKKFDIVVDLVGNS 4771929
Score = 37.4 bits (85), Expect = 1.5, Method: Composition-based stats.
Identities = 31/99 (31%), Positives = 45/99 (45%)
Frame = -1
Query: 34 GSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGG 93
G Y+ VV +L+VP + A A +LC G+T + + G GS V V GG
Sbjct: 3936464 GGYSEKVVVDEHFVLKVPSNLNLAAVAPLLCAGITTWSPL-RHWKVGKGSKVAV-VGLGG 3936291
Query: 94 TGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVI 132
G + ++AK GA V +K A +G V+I
Sbjct: 3936290 LGHMAIKLAKGLGAEVTLFSRTPDKIQDAIDLGADSVII 3936174
>gb|CP000740.1| Sinorhizobium medicae WSM419 plasmid pSMED02, complete genome
Length = 1245408
Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 67/164 (40%), Positives = 91/164 (55%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G EGAG + VG GV E +G RVA+ GSYA + A +L+++PD + DA AA
Sbjct: 289322 GVEGAGRAIAVGDGVDELEVGDRVAW---AYAPGSYAQRHSIPAGSLVKIPDAIDDATAA 289152
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+V+ QGLTA + YP G +VHAAAGG GLL+ Q+ +L+G RVIG +K
Sbjct: 289151 SVMMQGLTASHFATDFYPVQAGDIALVHAAAGGVGLLLTQIIRLKGGRVIGRVSSEDKVA 288972
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
A G V++D ++R +GV+ VYDG G TF
Sbjct: 288971 CARKAGAEHVIVD-AEGQFADDVLRVTGGEGVNVVYDGSGPKTF 288843
Score = 52.8 bits (125), Expect = 4e-05, Method: Composition-based stats.
Identities = 39/121 (32%), Positives = 58/121 (47%)
Frame = -2
Query: 44 ASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAK 103
A ++ +P VT A VL +G+TA YL+ S+Y G+ V+++ G G ++ AK
Sbjct: 782318 ADRVIPLPQSVTSYITATVLFEGITAQYLLKSTYQVKQGTVVLLYGVGGALGQIMAPWAK 782139
Query: 104 LRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQAT 163
GA VIG+ A A +G D V+ + + D VYDGVG+ T
Sbjct: 782138 HLGATVIGVVSKASSVDRARVLG-CDEVLVWRKGDLAEKVAAFTNGHKADLVYDGVGKLT 781962
Query: 164 F 164
F
Sbjct: 781961 F 781959
Score = 44.7 bits (104), Expect = 0.011, Method: Composition-based stats.
Identities = 48/166 (28%), Positives = 69/166 (41%), Gaps = 2/166 (1%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCT--GSYAAFTVVQASALLEVPDGVTDAQ 58
G E AG V ++G GV G V+ +Y A+ L P +T +
Sbjct: 813601 GLEAAGLVERIGLGVQGFEPGDPVSVLPPKSMVRWPAYGELATFPAALLARHPPSLTWEE 813422
Query: 59 AAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEK 118
AAAV Q LTA+ + G VV+ AA+ GL Q+A GA + + + K
Sbjct: 813421 AAAVWMQYLTAYGGLVDIGGLRRGDFVVITAASSSVGLAAIQIANRIGAIPVAVTRTSAK 813242
Query: 119 AMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
L G A V+ + +R +P+GV V+D VG F
Sbjct: 813241 RQLLLEAGAAHVIAS--QEEELEARLRRVSPRGVRLVFDPVGGPVF 813110
>emb|AM999887.1| Wolbachia endosymbiont of Culex quinquefasciatus Pel strain wPip complete
genome
Length = 1482455
Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 64/167 (38%), Positives = 90/167 (53%), Gaps = 4/167 (2%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETM-LGKRVAYFGGVGCT---GSYAAFTVVQASALLEVPDGVTD 56
G E G V K+G +S+ + +G RV Y CT G+Y +V L+++P+ + D
Sbjct: 896680 GVEAVGVVEKLGKKISDGLKVGDRVGY-----CTAPPGAYCEKRIVHQKYLIKIPNDIPD 896516
Query: 57 AQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGA 116
AAAVL +G+TAHYLV+ SY PG+ V+VH A GG G ++CQ AK + VIG
Sbjct: 896515 EVAAAVLFKGMTAHYLVNQSYKIRPGAFVLVHGANGGLGQIICQWAKDKKGIVIGSISSD 896336
Query: 117 EKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQAT 163
EK +A G I+Y ++ +GV AVYD +G AT
Sbjct: 896335 EKMKIALQSG-CTYAINYNDKDFVSKIMEITKNRGVGAVYDPIGYAT 896198
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome
Length = 7074893
Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 66/164 (40%), Positives = 91/164 (55%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G EGAG V VG V+ +G RVAY G G G+Y+ V+ + L+ +PD ++ QAA
Sbjct: 28327 GAEGAGVVEAVGSAVTRFKVGDRVAY--GSGPLGAYSDVHVLPEANLVRLPDAISFEQAA 28154
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
V+ +GLT YL+ +Y G TV+ HAAAGG G L CQ AK G ++IG EKA
Sbjct: 28153 GVMLKGLTVQYLLRQTYELQGGETVLFHAAAGGVGSLACQWAKALGVKLIGTVSSPEKAA 27974
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
+A ++G + IDY ++ K VYDGVG+ T+
Sbjct: 27973 IAKALGAWE-TIDYSHEDVARRVLELTGGKKCPVVYDGVGKDTW 27845
Score = 92.4 bits (228), Expect = 5e-17, Method: Composition-based stats.
Identities = 63/164 (38%), Positives = 93/164 (56%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G EGAG VV +G GVS +G RVAY G GSYA+ + A L+++P+ ++ AA
Sbjct: 2616586 GLEGAGRVVIIGEGVSNVQVGDRVAY--ATGPIGSYASARLYPAERLVKIPETLSFDDAA 2616759
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
AV+ +G+TA YL+ ++YP G TV+++ AGG G ++ AK GA VIG+
Sbjct: 2616760 AVMFKGITAQYLLKTTYPVTHGKTVLIYGVAGGLGEIMVPWAKHLGATVIGVVSKQASVE 2616939
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
A + G D V+ + A + R + VD VYD +G+A+F
Sbjct: 2616940 KALTSG-CDEVLVFDANNLASEVSRITQGRKVDVVYDPIGRASF 2617068
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 65/167 (38%), Positives = 79/167 (47%), Gaps = 2/167 (1%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V+ G G S +G RV FG + TG YA V + S+L +P +T QA
Sbjct: 2646010 GVEVAGRVLATGRGASRFEVGDRV--FGFINITGGYAGKAVARESSLALLPRSLTALQAG 2646183
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
AV LTA + PG V++HAAAGG G + Q+AK GA VI A
Sbjct: 2646184 AVPATALTAWQALTEHAGVQPGQKVLIHAAAGGVGSMAVQIAKYLGAEVIASASADNHAY 2646363
Query: 121 LATSVGRADVVIDYVAT--PDWPPLVRAAAPKGVDAVYDGVGQATFA 165
L +G AD VIDY W P VD V D VG+ T A
Sbjct: 2646364 L-KGLG-ADQVIDYRRQDFTQWRP--------AVDVVLDLVGEQTQA 2646474
Score = 62.4 bits (150), Expect = 5e-08, Method: Composition-based stats.
Identities = 54/164 (32%), Positives = 73/164 (44%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V VG V G RV G GS+A V +L +P + AA
Sbjct: 6794846 GGEAAGVVSAVGEKVGHLKAGDRVMALTG---WGSFAEQVAVPGYNVLPIPAAMDFNTAA 6795016
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A T+ + + PG T++V A+GG GL ++ K GARVI AEK
Sbjct: 6795017 AFSMTYGTSMHALKQRGNLQPGETLLVLGASGGVGLAAVEIGKAMGARVIAAASSAEKLA 6795196
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
+A + G AD +I+Y + + R G D +YD VG F
Sbjct: 6795197 VAKAAG-ADELINYSESSLKDEIKRLTGGNGADVIYDPVGGDLF 6795325
Score = 61.6 bits (148), Expect = 8e-08, Method: Composition-based stats.
Identities = 51/138 (36%), Positives = 75/138 (54%), Gaps = 3/138 (2%)
Frame = +1
Query: 30 VGCTGSYAAFTVVQASALLEVPDGV-TDAQAAAVL-CQGLTAHY-LVDSSYPCGPGSTVV 86
VG TG + + + L+ VP G+ + + A VL G+TA+ L+D P G T+V
Sbjct: 2127586 VGATG-WQSHCICDGRNLIPVPSGLPSPSMALGVLGMPGMTAYMGLMDIGQP-KAGETLV 2127759
Query: 87 VHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRA 146
V AA+G G +V Q+AKL+G RV+G+ GGA+K D ID+ +PD+ +
Sbjct: 2127760 VGAASGAVGSVVGQVAKLKGLRVVGVAGGADKCRYVVEELGFDACIDH-KSPDFADELAQ 2127936
Query: 147 AAPKGVDAVYDGVGQATF 164
A KGVD ++ VG F
Sbjct: 2127937 ACFKGVDIYFENVGGKVF 2127990
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 45/134 (33%), Positives = 64/134 (47%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G + AG VV+VGP V G V G++A + V +A+ P T +AA
Sbjct: 3121849 GNDLAGVVVEVGPQVQRFKPGDEVYARPPETRIGTFAQWIAVNENAIALKPANTTMTEAA 3121670
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
++ LTA ++ + G V++HA AGG G L Q+AK GA V A
Sbjct: 3121669 SIPLVALTAWQVLVETAQLKKGQKVLIHAGAGGVGTLAIQLAKHLGAFVATTTSTANVEW 3121490
Query: 121 LATSVGRADVVIDY 134
+ ++G AD VIDY
Sbjct: 3121489 V-KALG-ADQVIDY 3121454
Score = 52.4 bits (124), Expect = 5e-05, Method: Composition-based stats.
Identities = 38/102 (37%), Positives = 55/102 (53%), Gaps = 1/102 (0%)
Frame = -1
Query: 60 AAVLCQGLTAHY-LVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEK 118
+A+ G+TA++ L+D P G TVV+ AAG G + Q+A+++G RV+GI GG +K
Sbjct: 1962110 SALGMTGMTAYFALLDVGAP-KAGDTVVLSGAAGAVGSIAGQIARIKGCRVVGIAGGQDK 1961934
Query: 119 AMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
D IDY D ++ PKGVD +D VG
Sbjct: 1961933 CRFLIDELGFDGAIDY-KNEDVHAGLKRECPKGVDVYFDNVG 1961811
Score = 52.4 bits (124), Expect = 6e-05, Method: Composition-based stats.
Identities = 49/165 (29%), Positives = 71/165 (43%), Gaps = 5/165 (3%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTG--SYAAFTVVQASALLEVPDGVTDAQ 58
G E AG V VG GV + +G +VA F Y V+ SAL PD ++ +
Sbjct: 3728454 GHEMAGVVTAVGEGVDDLAVGDKVASFPAESPNDYPVYGELIVLPRSALTRYPDVLSPIE 3728275
Query: 59 AAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEK 118
AA L A++ PG +V A+ G Q+ K G RVI AE+
Sbjct: 3728274 AAVHYTPLLIAYFAYADLARVKPGQFALVTDASHCAGPSFVQLGKALGVRVIAATKTAEE 3728095
Query: 119 AMLATSVGRADVVIDYVATPDWPPLV---RAAAPKGVDAVYDGVG 160
S+G V++ T + L+ + +GVD V+DG+G
Sbjct: 3728094 REYLLSLGAEKVIV----TEEQDLLMQINKLTDNRGVDVVFDGLG 3727972
Score = 44.3 bits (103), Expect = 0.014, Method: Composition-based stats.
Identities = 41/126 (32%), Positives = 58/126 (46%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E +G V +VGPG S + + A G G A VV A +L VP+G++ A+AA
Sbjct: 5102241 GLECSGVVSEVGPGSSWQVGDRVCALLAG----GGMAEEVVVDARHVLPVPEGLSLAEAA 5102074
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A+ TA + PG V++HA A G G Q+ K G G A++
Sbjct: 5102073 ALPEVYSTAWLNLFQLAALKPGEKVLLHAGASGVGSAAIQLCKAFGNPCWVSVGSADRLA 5101894
Query: 121 LATSVG 126
S+G
Sbjct: 5101893 YCESLG 5101876
Score = 43.5 bits (101), Expect = 0.025, Method: Composition-based stats.
Identities = 55/182 (30%), Positives = 75/182 (41%), Gaps = 20/182 (10%)
Frame = -2
Query: 3 EGAGTVVKVGPGVSETMLGKRV------------------AYFGGVGCTGSYAAFTVVQA 44
+GAG V VG GVSE +G V + G G G YA V+Q
Sbjct: 4003534 DGAGVVEAVGEGVSEFEVGDAVVSCFFPHWHDGGPAIADFSTTPGDGVDG-YAREVVIQP 4003358
Query: 45 SA-LLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAK 103
S P G + A+AA + GLTA + G TV+V GG + Q+AK
Sbjct: 4003357 SHWFTHAPKGYSHAEAATLTTAGLTAWRALVVDGALKAGETVLV-LGTGGVSIFALQLAK 4003181
Query: 104 LRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDW-PPLVRAAAPKGVDAVYDGVGQA 162
GA VI K +G AD ++Y P+W +++ +GVD V + G
Sbjct: 4003180 AMGATVIATSSSDAKLAKVRELG-ADHTLNYRTHPEWGAEVLKLTGGRGVDHVVEVGGPG 4003004
Query: 163 TF 164
T
Sbjct: 4003003 TL 4002998
Score = 39.7 bits (91), Expect = 0.37, Method: Composition-based stats.
Identities = 53/185 (28%), Positives = 77/185 (41%), Gaps = 25/185 (13%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAY------------------------FGGVGCTGSY 36
G E G VV +GPGV +LG+RVA F G+ G +
Sbjct: 3886063 GHEFCGQVVALGPGVDARLLGQRVAVEPEYRCGECSYCQMGQYNLCESMGFIGLMGDGGF 3886242
Query: 37 AAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGL 96
A VV A L +PD V+ QAA + + H L SS G V G GL
Sbjct: 3886243 AEQAVVPAYMLHLLPDSVSFKQAAVLEPAAVAYHALNQSSLMAGDSCAVF---GLGPIGL 3886413
Query: 97 LVCQMAKLRGA-RVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAV 155
L+ +A+LRG R+ + E+ LA G ++ + A P +R + G+D+
Sbjct: 3886414 LLVLLARLRGVERIYAVDLDPERRRLALEFGASEALDG--ADPQLQARLRQLSAGGIDSA 3886587
Query: 156 YDGVG 160
++ G
Sbjct: 3886588 FEAAG 3886602
Score = 35.4 bits (80), Expect = 6.3, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 30/50 (60%)
Frame = -3
Query: 34 GSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGS 83
G Y+ VV+ +L VP+G+ A+AA +LC G+T Y ++ GPGS
Sbjct: 2685096 GGYSKHLVVREEFVLRVPEGLDLAKAAPLLCAGITT-YSPLRTWNVGPGS 2684950
>ref|XM_001543765.1| Ajellomyces capsulatus NAm1 predicted protein (HCAG_00861) partial
mRNA
Length = 1017
Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 69/170 (40%), Positives = 95/170 (55%), Gaps = 6/170 (3%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSET--MLGKRVAYFGGVGCTGSYAAFTVVQASA-LLEVPDGVTDA 57
G E GT+V VGPG + +G+RVA+ TG YA +T V A A + VP G++D
Sbjct: 214 GREAVGTIVAVGPGANPKNFTVGERVAWMN----TGGYAEYTAVPAEANVARVPAGLSDE 381
Query: 58 QAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAE 117
A A GLT V +YP G +++HAAAGG G L+ Q+ K+ GA+VI G
Sbjct: 382 DAVAGFLSGLTTLTFVREAYPVKQGDWILIHAAAGGAGFLMTQLVKMTGAKVIATAGSPA 561
Query: 118 KAMLATSVGRADVVIDYVAT--PDW-PPLVRAAAPKGVDAVYDGVGQATF 164
K L +G ADVVIDY + +W ++ +GVDAV+D VG+ T+
Sbjct: 562 KVELVKGLG-ADVVIDYRSAEGANWEEKVMDVTGGEGVDAVFDSVGKDTW 708
>gb|CP000084.1| Candidatus Pelagibacter ubique HTCC1062, complete genome
Length = 1308759
Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats.
Identities = 64/164 (39%), Positives = 88/164 (53%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E G + +VG V +G RVA+ GSY+ + L+ VP+G++D A+
Sbjct: 148660 GLEACGIIEEVGSEVDLFKVGDRVAH--SSMPIGSYSEKQLFPQEKLVLVPEGISDEIAS 148833
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
++ +G+TA YL+ +YP G V+ HAAAGG G ++CQ A GA VIG G EK
Sbjct: 148834 CIMLKGITAEYLLHRAYPIKKGDKVLYHAAAGGVGQILCQWANALGAEVIGTVGSKEKEA 149013
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
+A G VI+Y T + + A GVD VYDGVG TF
Sbjct: 149014 IAKKNG-CHHVINYTDTNFVEEVEKIAGKNGVDVVYDGVGIKTF 149142
Score = 38.1 bits (87), Expect = 0.92, Method: Composition-based stats.
Identities = 50/179 (27%), Positives = 72/179 (40%), Gaps = 14/179 (7%)
Frame = -3
Query: 1 GEEGAGTVV-----KVGPGVSETMLGKRVA--YFGGVGCTGSYAAFTVVQASALLEVPDG 53
G + AGTV+ K G + G RV YFGG Y+ F V L++ P
Sbjct: 1187131 GIDFAGTVLESDNSKFIKGDEVILTGWRVGEIYFGG------YSQFAKVNGDYLVKKPKD 1186970
Query: 54 VTDAQAAAVLCQGLTA---HYLVDSSYPCGPGST---VVVHAAAGGTGLLVCQMAKLRGA 107
++ QA + GLTA + + + G V+V A+GG G + + G
Sbjct: 1186969 ISSKQAMILGTAGLTALLCSFAIKAREELLLGEKVKDVLVTGASGGVGSIAVMILNKFGY 1186790
Query: 108 RVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGV-DAVYDGVGQATFA 165
V + G AE S+G +++ D PL KG+ D V D VG A
Sbjct: 1186789 DVTAVTGKAENEKYLRSLGAKNIINKADLDKDARPL-----DKGLWDGVVDTVGGKILA 1186628
>gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complete sequence
Length = 2580084
Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats.
Identities = 61/165 (36%), Positives = 92/165 (55%), Gaps = 1/165 (0%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G + G V VGPGV++ +G RV Y +G G+Y+ V+ A L+ +PDG+ D AA
Sbjct: 1110405 GSDAVGVVEAVGPGVTDIRVGDRVGYL--LGPQGAYSDVRVMPADVLIPLPDGIADRTAA 1110578
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
++ +G+TA YL YP G T++ HAAAGG GL+ CQ A+ G +IG EKA
Sbjct: 1110579 TLMMKGMTAQYLFRQVYPLKGGETILYHAAAGGVGLIACQWARALGVTMIGTVSSDEKAE 1110758
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAP-KGVDAVYDGVGQATF 164
+A + G ++ + + V+A KGV V+D +G++T
Sbjct: 1110759 IAKANGCTHTIV--TSRENIAERVKALTDGKGVPVVFDSIGKSTL 1110887
Score = 91.7 bits (226), Expect = 7e-17, Method: Composition-based stats.
Identities = 64/165 (38%), Positives = 92/165 (55%), Gaps = 1/165 (0%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG + VG GV+ +G RV Y G G+Y+ ++ A L+++P+ ++ AA
Sbjct: 1838962 GNEAAGVIEAVGSGVTHLAVGDRVTYTGFTPTLGAYSTDRLISADPLIKLPEAISCEVAA 1839141
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A+ +GL+A YL+ YP G T+++HAAAGG GL++ Q AKL G VIG KA
Sbjct: 1839142 AMTMRGLSAAYLMRRIYPFKAGDTILLHAAAGGAGLIISQWAKLLGLTVIGTVSTDAKAE 1839321
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPK-GVDAVYDGVGQATF 164
+A + G D I+Y + D VR GV V+D VG+ TF
Sbjct: 1839322 VARAHG-CDHTINY-SHEDVAKRVRELTDGVGVSVVFDSVGKDTF 1839450
Score = 80.1 bits (196), Expect = 2e-13, Method: Composition-based stats.
Identities = 61/127 (48%), Positives = 76/127 (59%)
Frame = -1
Query: 34 GSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGG 93
G YA F V+Q S + +PDGV++A A A+ T+ Y + G TV+VHAAAGG
Sbjct: 2094054 GGYAQFAVIQKSEAIVIPDGVSNAAALALRSNYPTSLYALREVGQLKAGETVLVHAAAGG 2093875
Query: 94 TGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVD 153
G +AK GARVIG GGAEK A S+G AD V+DY DW +V+ AP+GVD
Sbjct: 2093874 VGSAAVALAKWLGARVIGTAGGAEKVKAALSLG-ADAVVDY-RRDDWVDMVKQLAPQGVD 2093701
Query: 154 AVYDGVG 160
VYD VG
Sbjct: 2093700 VVYDPVG 2093680
Score = 52.0 bits (123), Expect = 7e-05, Method: Composition-based stats.
Identities = 48/157 (30%), Positives = 69/157 (43%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG +V VG V +G V + G YA + V S L +P+G++ +AA
Sbjct: 726519 GLEVAGEIVSVGRDVIRFAVGDLVC---ALVPGGGYAEYAVAHESNTLTIPEGLSMVEAA 726349
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A+ LT + G +V++H A G G +AK GA I G++
Sbjct: 726348 ALPETFLTVWLNLFQRGKFSAGESVLIHGGASGIGTTATMLAKAFGASKIITTVGSDTQR 726169
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYD 157
A+ ADV +DY + RA +GVD V D
Sbjct: 726168 DASIALGADVAVDYRNEDFVEAVARATDGRGVDVVVD 726058
Score = 41.2 bits (95), Expect = 0.10, Method: Composition-based stats.
Identities = 62/165 (37%), Positives = 78/165 (47%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G + AGTV+ VG VS G V G +G G+YA VV + L P ++ AA
Sbjct: 740591 GVDAAGTVLAVGRNVSTLAPGDEV--MGFIGIVGAYANRIVVDPARLARKPARLSFTDAA 740418
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A LTA + G +V++HAAAGG G Q+AKL GA VIG +
Sbjct: 740417 ATPAATLTAWQALHEHGELRKGQSVLIHAAAGGVGSAAVQLAKLAGAHVIGTASPGNREY 740238
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATFA 165
+ S+G A+ VIDY AT A VD V D VG T A
Sbjct: 740237 V-QSLGAAE-VIDYHATD------FAKQVSDVDLVLDLVGGTTQA 740127
Score = 39.3 bits (90), Expect = 0.44, Method: Composition-based stats.
Identities = 38/135 (28%), Positives = 61/135 (45%), Gaps = 1/135 (0%)
Frame = +1
Query: 31 GCTGSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAA 90
G Y QA+ L +PDG+TD Q ++C + + + + +V A
Sbjct: 2259859 GTQAEYVLVPDAQAN-LAPIPDGLTDEQV--LMCPDIMSTGFSGAEHANIKIGDIVAVFA 2260029
Query: 91 AGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPK 150
G GL A+LRGA +I G + + + ADV +++ T ++R +
Sbjct: 2260030 QGPIGLCATAGARLRGASLIIAVDGIDDRLNISRQMGADVTLNFRNTDVVQEILRITGGR 2260209
Query: 151 GVDAVYDGVG-QATF 164
GVDA + +G QATF
Sbjct: 2260210 GVDASIEALGTQATF 2260254
>gb|CP000480.1| Mycobacterium smegmatis str. MC2 155, complete genome
Length = 6988209
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 70/169 (41%), Positives = 97/169 (57%), Gaps = 4/169 (2%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G EGAG V +VG GV++ +G RV Y +G +YA V A ++ +P G++ AA
Sbjct: 4225850 GHEGAGVVERVGAGVTDIGVGDRVGYIDPIG---AYADLVVRPADRVIPLPPGISTRLAA 4226020
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+L +G+T+ YLV +YP G T++VHAAAGG G ++CQ A+ GA VIG G A K
Sbjct: 4226021 GMLMKGMTSEYLVRRTYPVRQGQTILVHAAAGGVGQILCQWARYLGATVIGTVGSAAKRQ 4226200
Query: 121 LATSVGRADVVIDYVATPDWPPLVRA----AAPKGVDAVYDGVGQATFA 165
+A + G V+++ D LV A A +GV VYDGVG FA
Sbjct: 4226201 IAANAGCEHVIVN-----DEEDLVAAVRDITAGRGVPVVYDGVGGDGFA 4226332
Score = 93.6 bits (231), Expect = 2e-17, Method: Composition-based stats.
Identities = 68/167 (40%), Positives = 85/167 (50%), Gaps = 3/167 (1%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E GTV +G V+ +G RV VG +YA + V A + VPDGV A
Sbjct: 3181644 GTEVCGTVAAIGNDVAALKVGDRVVTANAVG---AYADYCVAPADFVAYVPDGVAPEAVA 3181474
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+ L +G+TAHYL+ S+YP P TV+VHA AGG GL++ Q A G RVI EKA
Sbjct: 3181473 SALLKGMTAHYLLKSTYPVQPSDTVLVHAGAGGVGLILTQWATSLGTRVITTASTPEKAE 3181294
Query: 121 LATSVGRADVVIDYVATPDWPPLVRA---AAPKGVDAVYDGVGQATF 164
L+ G +V+ P R GV AVYDGVG TF
Sbjct: 3181293 LSRQAGAVEVLDYPDPDDPQPFASRVRELTGGAGVAAVYDGVGATTF 3181153
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 43/121 (35%), Positives = 65/121 (53%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G + AGTV ++G GVS +G+RV +G + G++A+ V A L +PDG+ +AA
Sbjct: 473493 GGDFAGTVTQLGAGVSGLEIGQRV--YGSM--QGAFASRFNVPAQFLAPIPDGIGAVEAA 473326
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+ LT D + PG V++HAA+GG GL QMA+ GA V +++
Sbjct: 473325 TIPAAALTVRLAFDWA-QLKPGDKVLIHAASGGVGLAAIQMAQQSGAEVFATASTFKRST 473149
Query: 121 L 121
L
Sbjct: 473148 L 473146
Score = 59.3 bits (142), Expect = 4e-07, Method: Composition-based stats.
Identities = 62/166 (37%), Positives = 87/166 (52%), Gaps = 4/166 (2%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G + AG V VGPGV+E +G V G TG+YA + + +A+ L+ P +T A
Sbjct: 6792473 GSDVAGIVDAVGPGVTEWAVGNEVL---GRSATGAYAEYALAEAAELIGKPGEITWEVAG 6792643
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAE--- 117
++ G TAH ++D G T++VHAAAGG G Q+A RG VIG G
Sbjct: 6792644 SLAGAGGTAHAVLDR-LDLKSGETLLVHAAAGGVGTFAVQLAGARGVSVIGTAGEGNHDY 6792820
Query: 118 -KAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQA 162
+++ AT V D +++ VRAAAP+GVDAV D G+
Sbjct: 6792821 LRSIGATPVTYGDGLLER---------VRAAAPQGVDAVLDASGRG 6792931
Score = 58.2 bits (139), Expect = 8e-07, Method: Composition-based stats.
Identities = 41/118 (34%), Positives = 60/118 (50%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E +G VV++G G + +G+RV GS A + V+ L +P V AA
Sbjct: 4526620 GHELSGVVVELGYGTTRFTIGQRVFGLADWARNGSLAEYAAVETRHLAPLPYDVDHTLAA 4526441
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEK 118
A+ GL+A + G TV++H AAGG G + Q+A+ GARVIG A++
Sbjct: 4526440 ALPISGLSAWQGLFEHAQLVAGQTVLIHGAAGGVGSIAVQLAREVGARVIGTGRAADR 4526267
Score = 54.3 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 52/165 (31%), Positives = 75/165 (45%), Gaps = 1/165 (0%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG VV+ P + G RV G +G A + + ++PD V A
Sbjct: 2111329 GAEVAG-VVRSAPAGASVAAGDRV--LGLTMLSGGMAEVVALPEDRVFKLPDAVPFDAGA 2111159
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMA-KLRGARVIGICGGAEKA 119
+L +T H+++ + G TV+VH AAGG G V ++A L AR I + EK
Sbjct: 2111158 GILFNDMTVHFVLRTRGRLSGGETVLVHGAAGGIGSSVLRLAPALGAARTIAVVSTEEKG 2110979
Query: 120 MLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
+A + G +DVV+ A + +GVD V D VG F
Sbjct: 2110978 EIARAAGASDVVL---ADGFRDAVKELTDGRGVDMVVDPVGGDRF 2110853
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 38/111 (34%), Positives = 57/111 (51%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E +G V ++G G + +G+RV G+ A + V+A L + + AA
Sbjct: 5838212 GHEVSGVVAELGFGTTGLAVGQRVFGLTDWCRNGTLAEYVAVEARNLAPLSATIDHTTAA 5838391
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIG 111
A+ GLTA + + PG TV++H AAGG G + Q+A+ GA VIG
Sbjct: 5838392 ALPISGLTAWQGLFTHGHLTPGETVLIHGAAGGVGSIAVQLAREAGAHVIG 5838544
Score = 52.4 bits (124), Expect = 6e-05, Method: Composition-based stats.
Identities = 57/165 (34%), Positives = 77/165 (46%), Gaps = 1/165 (0%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AGTV + P S G+RV+ F +G YA ++ P+ + DA AA
Sbjct: 121299 GMEVAGTV-RSAPESSGFAPGQRVSAFTMIG---GYAEQVAALPDNVIPTPENLDDASAA 121466
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A+L T + + PG TV+V +AGG G Q+AK GA VI + A
Sbjct: 121467 ALLGNYYTTQFALARRGALVPGETVLVLGSAGGIGTASIQLAKAHGAGVIAMVHRAGAED 121646
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAP-KGVDAVYDGVGQATF 164
+ +G ADVV+ T W V AA +GVD V D +G F
Sbjct: 121647 FVSGLG-ADVVLPL--TDGWRDAVLAATDGRGVDLVVDPIGGPAF 121772
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 47/134 (35%), Positives = 64/134 (47%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E +GTV +G GVS +G+ V + G YA + V A +L VPDGV+ AA
Sbjct: 6418549 GLEVSGTVEALGDGVSGWSVGQPVC---ALLAGGGYAEYVAVPAPQVLPVPDGVSLRDAA 6418719
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+ T V + G ++VH A G G Q+AK GARV G EK
Sbjct: 6418720 GLPEVACTVWSNVVMTAGLTAGHLLLVHGGASGIGTHAIQVAKAMGARVAVTAGSEEKLG 6418899
Query: 121 LATSVGRADVVIDY 134
+ +G AD+ I+Y
Sbjct: 6418900 ICRDLG-ADITINY 6418938
Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 31/95 (32%), Positives = 48/95 (50%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E G V VGPGV+ +G RV GGV G ++ F +A ++P+G+++ +AA
Sbjct: 4823644 GSEFGGVVTAVGPGVTTHRVGDRV---GGVSANGCWSNFVTCEADLATKLPEGISEHEAA 4823814
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTG 95
AV T + G +++H+A GG G
Sbjct: 4823815 AVGLAYGTVWLGLTELARMSAGDKILIHSATGGVG 4823919
Score = 49.3 bits (116), Expect = 5e-04, Method: Composition-based stats.
Identities = 59/160 (36%), Positives = 75/160 (46%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V + GV++ +G RV G G G++A V AS L + + D AA
Sbjct: 4924962 GSEFAGVVTETADGVTDFAVGDRVV---GTGMHGAFAEEVCVDASCLQRAVERLDDRGAA 4925132
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A TA + + S G VVV A GG GL Q+A GARV + +EK
Sbjct: 4925133 ASGVAHRTAFHALRSVARVSTGDDVVVLGAGGGVGLAAVQIAAALGARVTAVASSSEKLD 4925312
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
A G A ++D+ A P L R A P G DAV D VG
Sbjct: 4925313 AAARYG-AHHLVDHTAGPLRAAL-RDAVPDGADAVLDPVG 4925426
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 60/190 (31%), Positives = 78/190 (41%), Gaps = 25/190 (13%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRV------AYFGGV------------------GCTGSY 36
G + AGTVV +G GV +G RV + GV G Y
Sbjct: 333437 GSDLAGTVVALGDGVQRFAVGDRVISNFVPEWLDGVRPGDARTLPYRTLGGHHPGVLAEY 333616
Query: 37 AAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGL 96
AF + P + DA+AA + C GLTA + + G TV+V GG L
Sbjct: 333617 VAFP---EDWFVRAPWSLGDAEAATLPCSGLTAWFALVERGRVRAGETVLVE-GTGGVAL 333784
Query: 97 LVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRA-AAPKGVDAV 155
+AK+ GA VI + A A +G AD VID DW V A +GVD V
Sbjct: 333785 FALAIAKIHGAEVI-VSASATNLARARELG-ADHVIDR-RREDWTDAVLTLTADRGVDHV 333955
Query: 156 YDGVGQATFA 165
+ VG + A
Sbjct: 333956 LEIVGGSHLA 333985
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 56/178 (31%), Positives = 77/178 (43%), Gaps = 16/178 (8%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V ++G GV LG+RV G G YA + V + L+ +PDGV+ A
Sbjct: 3483347 GLEIAGVVSELGDGVDAGWLGRRVFAMPMTG--GGYAEYVAVSSDQLIPLPDGVSARSAV 3483174
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICG------ 114
A+ L A V+ PG +V V A GG G++ Q+ RGA V
Sbjct: 3483173 ALGMNALVAKIAVE-RMGSAPGESVYVRGAGGGIGIMAVQICNARGAHVTATTSSALRGE 3482997
Query: 115 -----GAEKAMLATSVGRA-----DVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQA 162
GAE + + G + D+++D VA P V P G + GVG A
Sbjct: 3482996 RLRALGAEHVVDRHASGESDSRSYDLIVDTVAGPQLGSYVAKLKPNGRYILCGGVGGA 3482823
Score = 45.8 bits (107), Expect = 0.004, Method: Composition-based stats.
Identities = 50/135 (37%), Positives = 66/135 (48%), Gaps = 5/135 (3%)
Frame = -1
Query: 34 GSYAAFTVVQASALL-EVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAG 92
G YA + ++ A A++ VPD V+D AA C Y ++ G TVVV A G
Sbjct: 2944923 GGYADYFLLPAKAVVYTVPDSVSDEIAAGANCALSQVMYGLER-VDLQLGETVVVQGA-G 2944750
Query: 93 GTGLLVCQMAKLRGAR-VIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLV---RAAA 148
GL +AK RGA+ VI I G E+ LA + G AD VID AT D + R
Sbjct: 2944749 ALGLYAVAVAKARGAKTVIAIDGVPERLELAKAFG-ADEVIDITATTDKDRVKIVRRLTD 2944573
Query: 149 PKGVDAVYDGVGQAT 163
+G D V + VG +
Sbjct: 2944572 RQGADVVVEVVGHPS 2944528
Score = 44.3 bits (103), Expect = 0.012, Method: Composition-based stats.
Identities = 44/133 (33%), Positives = 59/133 (44%), Gaps = 1/133 (0%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G EG G V VGP V ++GKRV G+++ V A ++EVPD D Q
Sbjct: 2229946 GAEGVGIVEAVGPEVDSNLVGKRVIVLPTY-TYGTWSEKVVAAAHDVIEVPDA--DPQQL 2230116
Query: 61 AVLC-QGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKA 119
A+L TAH L+D G V AA G V +A+ RG + + I E A
Sbjct: 2230117 AMLSINPPTAHLLLDRFVNLQVGDWVGQTAANSAVGRYVTTLARRRGLKTLNIV-RREDA 2230293
Query: 120 MLATSVGRADVVI 132
+ DVV+
Sbjct: 2230294 VEDVRAAGGDVVV 2230332
Score = 44.3 bits (103), Expect = 0.014, Method: Composition-based stats.
Identities = 44/156 (28%), Positives = 67/156 (42%), Gaps = 1/156 (0%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRV-AYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQA 59
G EGAG + VG + +G V + + G++A + + +L P ++ A
Sbjct: 4505910 GVEGAGVIRSVGSDQTGFRIGDEVLCHPVPLRDQGTWAPYLIAPVGSLARKPPEISWETA 4506089
Query: 60 AAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKA 119
A LTA +V + G T++VH A G TG L+ Q+A LRG V+
Sbjct: 4506090 AVFPIPALTAEQVVGDALALGDSDTLLVHGAGGLTGGLIVQLAALRGVDVLATASPRSAD 4506269
Query: 120 MLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAV 155
+ R V+DY P WP +A + AV
Sbjct: 4506270 RVRGYGARE--VLDY-RDPLWPHHAKALTTTPIRAV 4506368
Score = 43.9 bits (102), Expect = 0.016, Method: Composition-based stats.
Identities = 42/132 (31%), Positives = 58/132 (43%), Gaps = 2/132 (1%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFG--GVGCTGSYAAFTVVQASALLEVPDGVTDAQ 58
G EGAG V VG V +G RV G+YA + V A ++ PDGV
Sbjct: 4142431 GVEGAGFVHAVGSAVEGLSVGDRVIITAVPDADIRGTYAEYVTVPAQRVIGWPDGVDLVG 4142252
Query: 59 AAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEK 118
AAA+ TA+ + PG V++ AA+ G GL Q+A GA + + +K
Sbjct: 4142251 AAALWVSYSTAYGALIEKARIRPGDHVLITAASSGVGLAAIQVANQIGAIPLAVTRSPDK 4142072
Query: 119 AMLATSVGRADV 130
+ G A V
Sbjct: 4142071 KSALLNAGAAAV 4142036
Score = 41.2 bits (95), Expect = 0.12, Method: Composition-based stats.
Identities = 39/105 (37%), Positives = 52/105 (49%)
Frame = +2
Query: 29 GVGCTGSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVH 88
G G Y+ V+ SAL+ VP+G AA +LC G+T + + P +T+V
Sbjct: 6884078 GTTVDGGYSEMLYVRESALVRVPEGFDALTAAPLLCAGVTVFNALRAGD--APPNTLVAV 6884251
Query: 89 AAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVID 133
GG G L Q AK G V I G +KA LA ++G AD ID
Sbjct: 6884252 QGLGGLGHLGVQYAKKLGYEVAAIARGTDKADLAATLG-ADHYID 6884383
Score = 41.2 bits (95), Expect = 0.12, Method: Composition-based stats.
Identities = 46/151 (30%), Positives = 61/151 (40%), Gaps = 25/151 (16%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVA--YFG-----------------------GVGCTGS 35
G E AG + +G GV E +G RVA +FG G G
Sbjct: 6884973 GHEVAGQIDAIGAGVEEWQIGDRVAVGWFGFYCGSCYRCRRGDFVHCERSKVTGAAFPGG 6885152
Query: 36 YAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTG 95
YA VV S L +PD ++ AA + C G+T + + S PG V + G
Sbjct: 6885153 YAEMLVVHQSGLARIPDTLSATDAAPLACAGVTMFHSLRES-GARPGDVVAILGVGGLGH 6885329
Query: 96 LLVCQMAKLRGARVIGICGGAEKAMLATSVG 126
L V Q A G + I G EKA +A +G
Sbjct: 6885330 LGV-QFAAKMGFVTVAIARGNEKADMAMQLG 6885419
Score = 39.7 bits (91), Expect = 0.30, Method: Composition-based stats.
Identities = 46/147 (31%), Positives = 67/147 (45%), Gaps = 3/147 (2%)
Frame = +1
Query: 20 LGKRVA-YFGGVGCT--GSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSS 76
+G RVA GG+G T GSYA +T V+ + + + + +Q AA+ TA + S
Sbjct: 4100005 VGDRVAALMGGLGRTINGSYAEYTRVRTANVARIDVDLPWSQLAALPETYATAWTCLFRS 4100184
Query: 77 YPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVA 136
PG +++ A G +MA GARVI E+ T++G + +
Sbjct: 4100185 LELEPGQLLLIRGATSSFGQAALKMAVNAGARVIATTRKPEQFTTLTAMG---ALRGELE 4100355
Query: 137 TPDWPPLVRAAAPKGVDAVYDGVGQAT 163
PD R K VDAV D VG +T
Sbjct: 4100356 GPDLAR--RLPEAKSVDAVLDLVGNST 4100430
Score = 39.7 bits (91), Expect = 0.34, Method: Composition-based stats.
Identities = 42/143 (29%), Positives = 57/143 (39%), Gaps = 34/143 (23%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVA--------------------YFGGVGCTGSYAAF- 39
G E AG V +VG V++ +G RV Y G G G+Y A
Sbjct: 2400298 GHEIAGVVTEVGSEVTKYKVGDRVGVGCFVDSCRECDNCKAGLEQYCTGTGMVGTYNAID 2400119
Query: 40 -------------TVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVV 86
VV + +L +PD + AA +LC G+T Y + GPG V
Sbjct: 2400118 RDGTPTHGGYSGAIVVDENYVLRIPDSLPLDAAAPLLCAGITT-YSPLRHWNAGPGKKVA 2399942
Query: 87 VHAAAGGTGLLVCQMAKLRGARV 109
V GG G + ++AK GA V
Sbjct: 2399941 V-IGLGGLGHVAVKLAKAMGADV 2399876
Score = 39.7 bits (91), Expect = 0.34, Method: Composition-based stats.
Identities = 42/143 (29%), Positives = 57/143 (39%), Gaps = 34/143 (23%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVA--------------------YFGGVGCTGSYAAF- 39
G E AG V +VG V++ +G RV Y G G G+Y A
Sbjct: 1107036 GHEIAGVVTEVGSEVTKYKVGDRVGVGCFVDSCRECDNCKAGLEQYCTGTGMVGTYNAID 1106857
Query: 40 -------------TVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVV 86
VV + +L +PD + AA +LC G+T Y + GPG V
Sbjct: 1106856 RDGTPTHGGYSGAIVVDENYVLRIPDSLPLDAAAPLLCAGITT-YSPLRHWNAGPGKKVA 1106680
Query: 87 VHAAAGGTGLLVCQMAKLRGARV 109
V GG G + ++AK GA V
Sbjct: 1106679 V-IGLGGLGHVAVKLAKAMGADV 1106614
Score = 38.9 bits (89), Expect = 0.62, Method: Composition-based stats.
Identities = 59/208 (28%), Positives = 75/208 (36%), Gaps = 47/208 (22%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGC---------------------------- 32
G EG+G V VG GV + G V GC
Sbjct: 1200760 GHEGSGVVTAVGEGVDDLEPGDHVVLSWVPGCGECRYCKAGRPAQCSLVASVVAVKGTLY 1200581
Query: 33 ------------------TGSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVD 74
SYA VV + ++V A V C T V
Sbjct: 1200580 DGTTRLSNERGTVHHYLGVSSYAEQVVVPRNGAIKVRKDAPLEDIAIVGCAIATGVGAVR 1200401
Query: 75 SSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGA-RVIGICGGAEKAMLATSVGRADVVID 133
++ PGSTV V GG GL Q A+L GA R++ + AEK LA +G D V D
Sbjct: 1200400 NTAGVEPGSTVAV-IGCGGVGLACVQGARLAGASRIVAVDVVAEKLELARKLGATDAV-D 1200227
Query: 134 YVATPDWPPLVRAAAPKGVDAVYDGVGQ 161
AT D +R P G D V+D +G+
Sbjct: 1200226 ASATDDVVAAMREVLPDGYDYVFDAIGK 1200143
Score = 38.1 bits (87), Expect = 1.0, Method: Composition-based stats.
Identities = 54/188 (28%), Positives = 76/188 (40%), Gaps = 25/188 (13%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCT------------------------GSY 36
G E +G + K+GPGV+ G RV G C G++
Sbjct: 5377904 GHEASGVIAKLGPGVTGWSEGDRVIVAAGRPCMSCPNCLRGDIGNCLRIQLMAFAYDGAW 5378083
Query: 37 AAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGL 96
A +TV QA L VPD V QAA + T + V + G G +V V G
Sbjct: 5378084 AEYTVAQAVGLTRVPDNVPLEQAAILADAVSTPYGAVVRTGKVGIGESVGVWGVGGVGTH 5378263
Query: 97 LVCQMAKLRGAR-VIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAV 155
+V Q+++L GA VI + E A +VG AD D + +G+D
Sbjct: 5378264 IV-QLSRLVGAAPVIAVDIKPEVLERALAVG-ADYAFDARDEDLADKIAGVTGGRGLDVA 5378437
Query: 156 YDGVGQAT 163
+D VG A+
Sbjct: 5378438 FDAVGLAS 5378461
Score = 37.7 bits (86), Expect = 1.3, Method: Composition-based stats.
Identities = 34/89 (38%), Positives = 46/89 (51%)
Frame = +2
Query: 34 GSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGG 93
G+YA + VV + P G T A+AA + GLTA +D PG TV V AAG
Sbjct: 3378461 GAYAEYLVVAPDQVTRAPAGSTHAEAATLPMNGLTARLALDV-LDLAPGETVAVTGAAGA 3378637
Query: 94 TGLLVCQMAKLRGARVIGICGGAEKAMLA 122
G Q+AK+ G RVI A+ +++A
Sbjct: 3378638 VGGYAIQLAKVDGLRVIADAAPADSSLVA 3378724
Score = 37.4 bits (85), Expect = 1.6, Method: Composition-based stats.
Identities = 37/134 (27%), Positives = 52/134 (38%), Gaps = 25/134 (18%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRV-------------------------AYFGGVGCTGS 35
G E G VV GP V G RV + + G G
Sbjct: 3679517 GHEVVGEVVAAGPDVHGFAAGDRVGVAWLRYTCGRCAYCLRGRENLCPESRYTGWDADGG 3679338
Query: 36 YAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTG 95
YA +T V A+ +P G +D + A +LC G+ + + + P S + GG+
Sbjct: 3679337 YAEYTTVPAAYAHRLPGGYSDTELAPLLCAGIIGYRALMRTRL--PASGRLGIYGFGGSA 3679164
Query: 96 LLVCQMAKLRGARV 109
L Q+A RGARV
Sbjct: 3679163 HLTAQVALARGARV 3679122
Score = 35.8 bits (81), Expect = 4.8, Method: Composition-based stats.
Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 25/95 (26%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVA--YFGG-----------------------VGCTGS 35
G E AGTV ++GPGV + +G RVA +FGG + G
Sbjct: 3531860 GHEIAGTVAEIGPGVEDFAVGDRVAIGWFGGHCGTCVPCRKGLFIHCVNGQVPSLSYPGG 3531681
Query: 36 YAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAH 70
YA A+AL +PD ++ +AA + C G+T +
Sbjct: 3531680 YAESVTAPANALARIPDELSFVEAAPMGCAGVTTY 3531576
Score = 35.8 bits (81), Expect = 4.9, Method: Composition-based stats.
Identities = 35/100 (35%), Positives = 46/100 (46%), Gaps = 1/100 (1%)
Frame = +2
Query: 41 VVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQ 100
V+ S L VPDGV D A+ C + V+ + GP TVVV AG G+L
Sbjct: 6362447 VLPGSGRLRVPDGVPDDLASMASCALRSVVNAVEQAGRVGPEHTVVVQ-GAGPLGILATG 6362623
Query: 101 MAKLRGA-RVIGICGGAEKAMLATSVGRADVVIDYVATPD 139
+ GA RVI + + +A+ G D VI A PD
Sbjct: 6362624 LFAQAGAGRVITVGAPDTRLEIASEFGAHD-VISLAAHPD 6362740
>gb|CP000712.1| Pseudomonas putida F1, complete genome
Length = 5959964
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 67/164 (40%), Positives = 91/164 (55%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V VG GVS +G RVA+ GG G+Y+ + + L+++PD ++ QAA
Sbjct: 94539 GTEAAGVVEAVGEGVSRLKVGDRVAHAGGP--LGAYSEVHTLPEANLVKLPDTISFEQAA 94366
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
AV+ +GLT YL+ +Y G ++ HAAAGG G L CQ AK GA++IG AEKA
Sbjct: 94365 AVMLKGLTVQYLLKQTYEVKAGDVILFHAAAGGVGSLACQWAKALGAKLIGTVSSAEKAE 94186
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
A ++G A IDY ++ K VYDGVG T+
Sbjct: 94185 RAKALG-AWATIDYSREDVAKRVLELTDGKKCPVVYDGVGADTW 94057
Score = 95.5 bits (236), Expect = 6e-18, Method: Composition-based stats.
Identities = 65/165 (39%), Positives = 97/165 (58%), Gaps = 1/165 (0%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V VG GV++ ++G RV Y G + G+Y ++ A+AL+++P+ + AA
Sbjct: 3059740 GVEAAGVVEAVGEGVTQVVVGDRVTYTGFLNTLGAYCTERLIPAAALIKLPETIAFETAA 3059561
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A+ +GLT+ YL+ Y PG +V++HAAAGG GL+V Q A+L G VIG KA
Sbjct: 3059560 AMTMRGLTSAYLLRRLYDFKPGDSVLLHAAAGGVGLIVAQWARLLGLNVIGTVSTEAKAE 3059381
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPK-GVDAVYDGVGQATF 164
+A + G + +I+Y + D VR GV+ V+D VG+ TF
Sbjct: 3059380 VARAHG-CNHIINY-SVEDVASRVRELTDGVGVNVVFDSVGKTTF 3059252
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 52/136 (38%), Positives = 65/136 (47%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AGTV VG V ++G V FG +G G YA V A L P GV A+
Sbjct: 4188731 GVEVAGTVAAVGKNVQGFVVGDEV--FGFIGIVGGYATQAVAAADRLAHKPAGVPLLHAS 4188558
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+ LTA + PG TV++H AAGG G Q+A+L GA V+ +
Sbjct: 4188557 GIPAAALTAWQALHEHANLQPGQTVLIHGAAGGVGSFAVQLARLAGAYVVTTALAGNRDY 4188378
Query: 121 LATSVGRADVVIDYVA 136
L S+G A VIDY A
Sbjct: 4188377 L-YSLG-AQQVIDYTA 4188336
Score = 62.0 bits (149), Expect = 6e-08, Method: Composition-based stats.
Identities = 61/181 (33%), Positives = 79/181 (43%), Gaps = 19/181 (10%)
Frame = -3
Query: 3 EGAGTVVKVGPGVSETMLGKRV------------------AYFGGVGCTGSYAAFTVVQA 44
+GAG VV VG GV+E +G V A G G G +A
Sbjct: 5200305 DGAGEVVAVGAGVTEFQVGDNVVSTFFPDWLDGQANVEGFARVPGDGIDGYAREQVTARA 5200126
Query: 45 SALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKL 104
+A P G + A+AA + GLTA + S PG TV+V GG + Q AKL
Sbjct: 5200125 TAFTLAPQGFSHAEAATLTTAGLTAWRALMSDDHLKPGDTVLVQ-GTGGVSIFALQFAKL 5199949
Query: 105 RGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRA-AAPKGVDAVYDGVGQAT 163
GA VI K ++G AD +I+Y +TP W VR +GVD V + G AT
Sbjct: 5199948 AGATVIATSSSDAKLERLKALG-ADHLINYKSTPAWGEKVRELTGNRGVDHVIEVGGPAT 5199772
Query: 164 F 164
Sbjct: 5199771 L 5199769
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 42/101 (41%), Positives = 55/101 (54%)
Frame = +3
Query: 60 AAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKA 119
+A+ G+TA++ + G TVV+ AAG G +V Q+AK++G RV+GI GGAEK
Sbjct: 4376763 SALGMTGMTAYFALLEVGQPKAGDTVVISGAAGAVGSIVGQIAKIKGCRVVGIAGGAEKC 4376942
Query: 120 MLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
D VIDY A L R PKGVD +D VG
Sbjct: 4376943 QYLKDELGFDGVIDYKAEDVLAGLKR-ECPKGVDVYFDNVG 4377062
Score = 59.3 bits (142), Expect = 4e-07, Method: Composition-based stats.
Identities = 53/164 (32%), Positives = 73/164 (44%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V VG +G RV G G++A V +L +P + AA
Sbjct: 5751751 GGEAAGVVAAVGEKAGAFKVGDRVMALTG---WGAFAEQVAVPFYNVLPIPASMDFTTAA 5751921
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A T+ + + G T++V A+GG GL ++ K GARVI AEK
Sbjct: 5751922 AFGMTYGTSMHALRQRGQLQAGETLLVLGASGGVGLAAVEIGKAMGARVIAAASSAEKLA 5752101
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
+A + G AD +IDY + R +GVD +YD VG F
Sbjct: 5752102 VAKAAG-ADELIDYSQANLREEIKRLTGGQGVDVIYDPVGGELF 5752230
Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 45/141 (31%), Positives = 68/141 (48%), Gaps = 5/141 (3%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G + AG V +VG V+ G +V Y G + GSY+ + +V + P + AQAA
Sbjct: 3095064 GWDAAGIVREVGAQVTLFKPGDQVYYAGSIARPGSYSEYHLVDERIVGHQPRSLGAAQAA 3094885
Query: 61 AVLCQGLTAHYLVDSSYPC----GPGSTVVVHAAAGGTGLLVCQMAK-LRGARVIGICGG 115
A+ +TA L+ G G +++ AAGG G ++ Q+A+ L VIG
Sbjct: 3094884 ALPLTAITAWELLFDRLGIVEGGGEGDALLIVGAAGGVGSMLVQLARQLTRLTVIGTASR 3094705
Query: 116 AEKAMLATSVGRADVVIDYVA 136
AE + +G A VID+ A
Sbjct: 3094704 AETSNWVRELG-AHHVIDHSA 3094645
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 48/146 (32%), Positives = 69/146 (47%), Gaps = 1/146 (0%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRV-AYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQA 59
G + AG V +VG V+ G V A +G TG+ A F VV SA P ++ QA
Sbjct: 3081720 GSDLAGIVTEVGSNVTRFKPGDAVFASLFDLG-TGAIAEFAVVPESAAALKPANLSFEQA 3081544
Query: 60 AAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKA 119
A++ GLT+ + G V + +GG G Q+AK GA+V G
Sbjct: 3081543 ASIPMVGLTSWQALKERLTLQAGQKVFIPGGSGGIGTFAIQLAKHLGAKV-GTTTSTGNV 3081367
Query: 120 MLATSVGRADVVIDYVATPDWPPLVR 145
L ++G AD V+DY T D+ ++R
Sbjct: 3081366 DLVRALG-ADEVVDY-KTQDFETVLR 3081295
Score = 45.1 bits (105), Expect = 0.009, Method: Composition-based stats.
Identities = 45/158 (28%), Positives = 70/158 (44%), Gaps = 25/158 (15%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKR--VAYF-----------------------GGVGCTGS 35
G EG G V +VGPGV+ G R VA+F G G
Sbjct: 2205253 GHEGIGVVQEVGPGVTSLKPGDRASVAWFYQGCGHCEYCNSGNETLCRDVKNSGYTVDGG 2205074
Query: 36 YAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTG 95
A +V+A ++VPDG+ A A+++ C G+T + V S PG + ++ G
Sbjct: 2205073 MAEACIVKADYSVKVPDGLDSAAASSITCAGVTTYKAVKIS-NVRPGQWIAIYGLGGLGN 2204897
Query: 96 LLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVID 133
L + + A+VI I E+ A+ +G AD+V++
Sbjct: 2204896 LALQYAKNVFNAKVIAIDVNEEQLRFASEMG-ADLVVN 2204786
Score = 40.8 bits (94), Expect = 0.15, Method: Composition-based stats.
Identities = 47/161 (29%), Positives = 72/161 (44%), Gaps = 1/161 (0%)
Frame = -2
Query: 1 GEEGAGTVVKVGP-GVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQA 59
G E AG V G V + G RV FG S+A V A+A+ +P+G++ A
Sbjct: 4410385 GFEFAGVVQGKGAEAVGDFAPGDRVVGFGPC----SFANRLVTNANAVARIPEGMSFEAA 4410218
Query: 60 AAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKA 119
A + T +Y + PG V++H AAGG G+ Q+AK GA + G EK
Sbjct: 4410217 ATIPSTFFTVYYALHHLARLEPGEKVLIHGAAGGVGIAAIQIAKWLGAEIHATAGSDEKR 4410038
Query: 120 MLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
+G + + D + ++ A +GVD V + +
Sbjct: 4410037 DFLRLLGVSHIY-DSRSLAYADQVLAATGGRGVDVVLNSLA 4409918
Score = 37.0 bits (84), Expect = 1.9, Method: Composition-based stats.
Identities = 40/132 (30%), Positives = 61/132 (46%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E +G V +VG G + +G RV + +G+ A VV A +L VP+G+ +AA
Sbjct: 4508311 GLECSGVVEEVGAGAA-WRVGDRVC---ALLASGAMAEEVVVDARHVLPVPEGLGLHEAA 4508144
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A+ TA + G V+VHA A G G Q+ K G+ V G ++
Sbjct: 4508143 ALPEVYATAWLNIFQLGAVKAGEKVLVHAGASGVGSAAIQLCKAFGSPVWVSVGSQDRLA 4507964
Query: 121 LATSVGRADVVI 132
++G A V+
Sbjct: 4507963 YCQALGAAGGVV 4507928
Score = 37.0 bits (84), Expect = 2.0, Method: Composition-based stats.
Identities = 51/166 (30%), Positives = 74/166 (44%), Gaps = 2/166 (1%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGG--VGCTGSYAAFTVVQASALLEVPDGVTDAQ 58
G + AGTVV++G V+ G+ V G G G+ A + V A + P + +
Sbjct: 3086674 GLDLAGTVVELGEAVAGFTPGQEVFGMAGGIAGAQGTLAEYIAVDARLIASKPHALGMRE 3086495
Query: 59 AAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEK 118
AAA+ +TA + G V++H AGG G + Q+AK RGA V G A
Sbjct: 3086494 AAALPLVFITAWEGLVDHANVRSGQRVLIHGGAGGVGQVAVQLAKARGAEVYAT-GSAGN 3086318
Query: 119 AMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
++G IDY + + A +G D VYD VG +T
Sbjct: 3086317 LDFIRALGAT--AIDYQTQRVEAYVEQFTAGEGFDIVYDTVGGSTL 3086186
>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome
Length = 3570858
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 71/164 (43%), Positives = 92/164 (56%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G EGAG V+ VG GV+E G+RVAY G G+YA + A L+ +PD + AA
Sbjct: 2863104 GMEGAGIVLAVGEGVTEVQPGQRVAYAGRP--IGAYAEERCIPARRLVPLPDAIPTRMAA 2862931
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A++ +G+TA YL+ YP G+T++VHAAAGG G ++ A GA VIG G EK
Sbjct: 2862930 AMMLRGMTARYLLHGCYPVRQGTTLLVHAAAGGVGSMLVPWACHLGATVIGTAGSPEKRE 2862751
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
A + G VIDY + +GVD VYD VGQATF
Sbjct: 2862750 KALAAG-CHHVIDYRTGGVAARIRELTDGRGVDVVYDSVGQATF 2862622
>gb|CP001197.1| Desulfovibrio vulgaris str. 'Miyazaki F', complete genome
Length = 4040304
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 73/165 (44%), Positives = 93/165 (56%), Gaps = 1/165 (0%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G EGAGTV VG GV+E G RVAY G G+YA ++ A L+ +PD + AA
Sbjct: 1447500 GMEGAGTVEAVGDGVTEVRPGDRVAYAGNP--VGAYAERRLIPAHRLVTLPDDIDFVTAA 1447673
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
++ +G+TA YL+ YP G+T++VHAAAGG G LV A+ GA VIG G KA
Sbjct: 1447674 GMMLRGMTARYLLYGCYPVTEGTTMLVHAAAGGVGSLVVPWARHLGAMVIGTAGDEAKAE 1447853
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAP-KGVDAVYDGVGQATF 164
A + G V++ D VR +GVD VYD VGQATF
Sbjct: 1447854 RARANGCQHVIL--YRQEDVAARVRELTDGRGVDVVYDSVGQATF 1447982
>emb|AJ937762.1| Uncultured gamma proteobacterium fosmid clone b1bcf1.1.c04
Length = 38209
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 72/164 (43%), Positives = 93/164 (56%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G EGAG + VG GV+ G RVAY G+YA + A+ L+++P+ ++ QAA
Sbjct: 32814 GLEGAGEIQAVGEGVT-LREGDRVAYCSA--GFGAYAQALNLPAARLVKIPEDISFEQAA 32984
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
AVL +G T YL+ +YP PG T + HAAAGG GLL Q AK GA VIG G EKA
Sbjct: 32985 AVLLKGQTTEYLLQRTYPLQPGETCLFHAAAGGVGLLFGQWAKSIGANVIGTVGSDEKAR 33164
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
LA + G A VI+Y ++ + V VYDGVG+ TF
Sbjct: 33165 LALAHGFAH-VINYRTEDVVQRVLEITGGEKVPVVYDGVGRDTF 33293
>gb|CP001013.1| Leptothrix cholodnii SP-6, complete genome
Length = 4909403
Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats.
Identities = 72/169 (42%), Positives = 96/169 (56%), Gaps = 4/169 (2%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G EGAG V VG GV+ G RVAY GSY V+ A ++++PDG+ A
Sbjct: 1314115 GMEGAGIVEMVGEGVTHLQEGDRVAY--ASQPPGSYCEARVMPAKCVVQLPDGIDFETGA 1314288
Query: 61 AVLCQGLTAHYLVDSSYPCG---PGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAE 117
A++ +GLT YL+ S+ P G PG T++ HAAAGG GL+ CQ A+ G +IG G E
Sbjct: 1314289 AMMLKGLTVQYLLRSTQPQGGLKPGDTILFHAAAGGVGLIACQWARAMGLNLIGTAGSPE 1314468
Query: 118 KAMLATSVGRADVVIDYVATPDWPPLVRA-AAPKGVDAVYDGVGQATFA 165
K LA +G A I+Y T D+ V+ +GV AVYD +G+ TFA
Sbjct: 1314469 KCALALEMG-ASHAINY-RTEDFVARVKEITGGRGVKAVYDSIGRDTFA 1314609
Score = 93.2 bits (230), Expect = 3e-17, Method: Composition-based stats.
Identities = 64/170 (37%), Positives = 91/170 (53%), Gaps = 6/170 (3%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G + G V VG GV+E G RV Y +G G+Y+ ++ A L+ +PDGV+D A+
Sbjct: 2380099 GSDAVGVVEAVGEGVTEFKPGDRVGYL--LGPQGAYSDVRLIPADVLIPLPDGVSDRTAS 2379926
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A++ +G+TA YL YP G T++ HAAAGG GL+ CQ A+ G +IG EKA
Sbjct: 2379925 ALMMKGMTAQYLFRQVYPLQGGETILYHAAAGGVGLVACQWARALGVTMIGTVSTEEKAA 2379746
Query: 121 LATSVGRADVVIDYVATPDWPPLVRA------AAPKGVDAVYDGVGQATF 164
+A + G A ++ P+ + A KGV VYD VG+ T
Sbjct: 2379745 IAHAHGCAHTIVTGGTAPEALAGLIAKRVREITDGKGVPVVYDSVGKDTL 2379596
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 52/189 (27%), Positives = 79/189 (41%), Gaps = 24/189 (12%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGC------------------------TGSY 36
G +GAG V +V G + G+ V GVGC G+
Sbjct: 3021085 GLDGAGIVDEVDAGETLLQPGQAVVLHPGVGCGRCEFCHRGDVPLCTRVSYLGEHRDGTL 3021264
Query: 37 AAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGL 96
A + + AS + +PDG+ A+AAA+ LTA ++ P TV++ GG L
Sbjct: 3021265 AQYVSLPASNVFPMPDGLDFAEAAALGVNHLTAWRMLFGKARVQPWETVLIFGIGGGVSL 3021444
Query: 97 LVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVY 156
Q+ K+ GAR I K A ++G AD ++ ++ +GVD V
Sbjct: 3021445 AALQLVKMIGARAIVTSRDDAKLQRALAIG-ADHAVNGRTDDVARSVLALTGGRGVDVVI 3021621
Query: 157 DGVGQATFA 165
+ VG A +A
Sbjct: 3021622 ENVGSAVWA 3021648
Score = 51.6 bits (122), Expect = 9e-05, Method: Composition-based stats.
Identities = 41/127 (32%), Positives = 55/127 (43%)
Frame = +1
Query: 34 GSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGG 93
G YA + V L VP G D QAAA+ T V G T++V G
Sbjct: 1584400 GGYAQYCVAPVGQCLPVPAGFDDVQAAALPETFFTVWSNVFERARLQSGETLLVQGGTSG 1584579
Query: 94 TGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVD 153
G+ Q+AK RGA VI G +K ++G AD I+Y + +R +GVD
Sbjct: 1584580 IGVTAIQLAKARGATVIATAGSDDKCQACLALG-ADHAINYRSQDFAAEALRLTDGRGVD 1584756
Query: 154 AVYDGVG 160
+ D V
Sbjct: 1584757 VILDMVA 1584777
Score = 43.9 bits (102), Expect = 0.018, Method: Composition-based stats.
Identities = 44/135 (32%), Positives = 61/135 (45%), Gaps = 1/135 (0%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRV-AYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQA 59
G + AG V++VG V+ G V A +G TG+ A F VV P + QA
Sbjct: 4073643 GSDLAGVVIEVGSRVTRFKPGDAVFASVFDLG-TGTLAEFAVVPERVAALKPPNLDFVQA 4073467
Query: 60 AAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKA 119
A+V GLT+ + G G V + A +GG G Q+AK GA+V
Sbjct: 4073466 ASVPMVGLTSWQALKERAGLGSGKKVFIPAGSGGIGTFAIQLAKHLGAKVATTVSTG-NV 4073290
Query: 120 MLATSVGRADVVIDY 134
L +G AD ++DY
Sbjct: 4073289 ELVRGLG-ADEIVDY 4073248
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence
Length = 5888780
Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats.
Identities = 67/164 (40%), Positives = 91/164 (55%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V VG GVS +G RVAY GG G+Y+ + + L+++P+ ++ QAA
Sbjct: 30271 GTEAAGVVEAVGEGVSRIKVGDRVAYAGGP--LGAYSEVHTLPEANLVKLPEAISFEQAA 30098
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
AV+ +GLT YL+ +Y PG V+ HAAAGG G L CQ AK GA++IG EKA
Sbjct: 30097 AVMLKGLTTQYLLKQTYAVQPGDFVLFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAE 29918
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
A ++G A IDY ++ + VYDGVG T+
Sbjct: 29917 RAKALG-AWATIDYSQEDVAKRVLELTDGQKCSVVYDGVGADTW 29789
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 55/164 (33%), Positives = 74/164 (45%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V VG +G RV G G++A V +L +P G+ AA
Sbjct: 5646844 GGEAAGVVAAVGEKAGAFKVGDRVMALTG---WGAFAEQVAVPFYNVLPIPAGMDFTTAA 5647014
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A T+ + + G T++V A+GG GL ++ K GARVI AEK
Sbjct: 5647015 AFGMTYGTSMHALTQRGQLKAGETLLVLGASGGVGLAAVEIGKALGARVIAAASSAEKLA 5647194
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
+A + G AD +IDY + R +GVD VYD VG F
Sbjct: 5647195 VAKAAG-ADELIDYSQASLKDEIKRLTGGQGVDVVYDPVGGELF 5647323
Score = 59.3 bits (142), Expect = 4e-07, Method: Composition-based stats.
Identities = 59/181 (32%), Positives = 79/181 (43%), Gaps = 19/181 (10%)
Frame = +2
Query: 3 EGAGTVVKVGPGVSETMLGKRV------------------AYFGGVGCTGSYAAFTVVQA 44
+GAG VV VG GVSE +G V A G G G +A
Sbjct: 748982 DGAGEVVAVGAGVSEFKVGDAVVSTFFPSWLDGQAQVEGFASVPGDGIDGYAREQVTARA 749161
Query: 45 SALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKL 104
++ P G + A+AA + GLTA + S PG +V+V GG + Q AKL
Sbjct: 749162 TSFTHAPKGYSHAEAATLTTAGLTAWRALMSDDHLKPGDSVLVQ-GTGGVSIFALQFAKL 749338
Query: 105 RGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRA-AAPKGVDAVYDGVGQAT 163
GA VI K ++G AD +++Y +TP W VR +GVD V + G AT
Sbjct: 749339 AGATVIATSSSDAKLERLKALG-ADHLVNYKSTPAWGEKVRELTGNRGVDHVIEVGGPAT 749515
Query: 164 F 164
Sbjct: 749516 L 749518
Score = 58.5 bits (140), Expect = 6e-07, Method: Composition-based stats.
Identities = 44/102 (43%), Positives = 56/102 (54%), Gaps = 1/102 (0%)
Frame = -3
Query: 60 AAVLCQGLTAHY-LVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEK 118
+A+ G+TA++ L+D P G TVV+ AAG G + Q+AKL+G RVIGI GGA+K
Sbjct: 1586880 SALGMTGMTAYFALLDVGQP-KAGETVVISGAAGAVGSIAGQIAKLKGCRVIGIAGGAQK 1586704
Query: 119 AMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
D VIDY A L R P GVD +D VG
Sbjct: 1586703 CQYLKDELGFDGVIDYKAEDVLAGLKR-ECPGGVDVYFDNVG 1586581
Score = 40.0 bits (92), Expect = 0.23, Method: Composition-based stats.
Identities = 42/132 (31%), Positives = 62/132 (46%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V +VG G ++ +G RV + +G+ A VV A +L VP+G++ +AA
Sbjct: 1501388 GLECAGVVEEVGAG-ADWRVGDRVC---ALLASGAMAEEVVVDARHVLPVPEGLSLHEAA 1501555
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A+ TA + G V+VHA A G G Q+ K G+ V G E+
Sbjct: 1501556 ALPEVYATAWLNIFQLGGLKAGEKVLVHAGASGVGSAAIQLCKAFGSPVWVSVGSPERLA 1501735
Query: 121 LATSVGRADVVI 132
+G A V+
Sbjct: 1501736 YCQGLGAAGGVV 1501771
>gb|EZ028240.1| TSA: Acropora millepora SeqIndex5006, mRNA sequence
Length = 1173
Score = 91.7 bits (226), Expect(2) = 2e-19, Method: Composition-based stats.
Identities = 56/119 (47%), Positives = 79/119 (66%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AGTV K+G V +G+RVAY V + ++A F+++ AS L+++P+ V+ QAA
Sbjct: 269 GVEAAGTVEKLGDDVKGFSVGERVAY--TVIGSKAHADFSILAASRLVKIPEKVSFEQAA 442
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKA 119
+ QG+TAHYLV ++ G+ V+VHAAAGGTG L+CQ+AK GA VIG C K+
Sbjct: 443 TAMIQGITAHYLVHTTGRVTAGTKVLVHAAAGGTGSLLCQVAKNAGAFVIGTCSTEAKS 619
Score = 28.9 bits (63), Expect(2) = 2e-19, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = +1
Query: 116 AEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
+EK A G AD VI Y +++ KGV+ ++DG+G++TF
Sbjct: 610 SEKQKKAKEAG-ADEVILYRDKDFVEEVLKITDKKGVNVIFDGIGKSTF 753
>gb|CP001337.1| Chloroflexus aggregans DSM 9485, complete genome
Length = 4684931
Score = 99.8 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 75/164 (45%), Positives = 94/164 (57%), Gaps = 1/164 (0%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AGTV +G GVS +G RV G V G YA + + A L+ +P+ V AA
Sbjct: 2235029 GLEVAGTVDALGEGVSNWAVGDRV---GCVTAIGGYAEYALAFADKLVRIPENVDLETAA 2234859
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
AVL QG+TAHYL S++P G ++HAAAGG GLL+ Q+AK GARVIG EKA
Sbjct: 2234858 AVLLQGMTAHYLALSTFPLKAGDACLIHAAAGGVGLLLIQIAKRLGARVIGTVSTEEKAA 2234679
Query: 121 LATSVGRADVVIDYVATPDWPPLVRA-AAPKGVDAVYDGVGQAT 163
LA + G +VVI + RA +GVD VYD VG +T
Sbjct: 2234678 LARAAGADEVVI--YTRESFVERARAFTNGRGVDVVYDSVGAST 2234553
Score = 40.4 bits (93), Expect = 0.21, Method: Composition-based stats.
Identities = 30/94 (31%), Positives = 44/94 (46%), Gaps = 1/94 (1%)
Frame = +2
Query: 34 GSYAAFTVVQASALLEV-PDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAG 92
GS+ F V QA + V PD +A + +L G T + + ++ PG T+ + AA
Sbjct: 4119914 GSHQQFMVAQAPQCMPVLPDMTLEAAGSYILNLG-TIYRALFTTLRVQPGRTIFIEGAAT 4120090
Query: 93 GTGLLVCQMAKLRGARVIGICGGAEKAMLATSVG 126
GTGL + A G VIG+ +A S G
Sbjct: 4120091 GTGLDAVRTAARNGLNVIGMVSSPSRAATVLSAG 4120192
Score = 35.4 bits (80), Expect = 5.6, Method: Composition-based stats.
Identities = 47/158 (29%), Positives = 62/158 (39%), Gaps = 25/158 (15%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAY----FGGVGCTGSYAAFTVVQASALLE------- 49
G EG G V VG GV+ G RVA + GC + + + S L
Sbjct: 1798602 GHEGVGIVESVGTGVTNVKEGDRVAIPWLGYACGGCKYCASGWETLCESQLNTGYFLDGA 1798423
Query: 50 --------------VPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTG 95
VP GV+ AA + C G+T + V S S +V GG G
Sbjct: 1798422 YAQYAKAYAKYVGIVPPGVSPLDAAPLTCAGVTTYKAVKVS--GARPSELVAIFGVGGLG 1798249
Query: 96 LLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVID 133
L Q AK+ GA V I E+ A +G AD+ I+
Sbjct: 1798248 HLALQYAKIAGATVAAIDLLDERLQTARELG-ADITIN 1798138
>emb|CU633897.1| Podospora anserina genomic DNA chromosome 1, supercontig 6
Length = 1167431
Score = 99.8 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 73/169 (43%), Positives = 92/169 (54%), Gaps = 5/169 (2%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETML--GKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQ 58
G E AGTVV +GP E L G RV + G YA ++ V A+ L++PD V+
Sbjct: 164026 GREAAGTVVALGPKTEEFNLKVGDRVIWLANAG----YAEYSAVPAAKTLKLPDTVSYED 163859
Query: 59 AAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEK 118
A A GLT L +Y PG V++HAAAGG G L+ Q+ K GA+VIG GG EK
Sbjct: 163858 ATASFMSGLTVLALARETYTVQPGDWVLLHAAAGGAGFLMTQLLKHVGAKVIGTAGGPEK 163679
Query: 119 AMLATSVGRADVVIDYVAT--PDWPPLVR-AAAPKGVDAVYDGVGQATF 164
L S+G AD VIDY + DW V +GVD VYD VG+ T+
Sbjct: 163678 VELVKSLG-ADHVIDYRSEEGKDWVKTVMDITGGRGVDVVYDSVGKDTW 163535
Score = 60.1 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 60/177 (33%), Positives = 84/177 (47%), Gaps = 12/177 (6%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVV-----QASALLEVPDGVT 55
G+E AGT+ +G RV Y +YA +T++ QA+ L P +T
Sbjct: 756071 GKEAAGTIT--ASSHPSYPVGSRVVYLA----DNTYAQYTLLTFPLTQATIL---PASLT 755919
Query: 56 DAQAAAVLCQGLTAHYLVDSS------YPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARV 109
A A QGLTA V + G +VHAAAGGTG ++ Q+ + GA++
Sbjct: 755918 PETACAAYLQGLTALTFVREAAGITQQLGISEGPWTLVHAAAGGTGSMLVQILAVMGAKI 755739
Query: 110 IGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAA-PKGVDAVYDGVGQATFA 165
I GG +K LA +G VV + + V+ KGVD V+DGVG+ATF
Sbjct: 755738 IATAGGKQKCELAKKLGAGWVVDSSLPQEEVIQQVKEITNNKGVDVVFDGVGKATFG 755568
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 47/130 (36%), Positives = 62/130 (47%), Gaps = 2/130 (1%)
Frame = -1
Query: 25 AYFGGVGCTGSYAAFTVVQASALLEVPD--GVTDAQAAAVLCQGLTAHYLVDSSYPCGPG 82
A G GS+ + V AS + + P GV AA +LC GLT + + S PG
Sbjct: 339839 AQLSGYTVDGSFQQYAVANASHVAKFPKDKGVELDAAAPILCAGLTVYTGLKQS-EARPG 339663
Query: 83 STVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPP 142
V + A GG G L Q AK G VI I GG EK +G A+V +DY+ + D
Sbjct: 339662 QYVAIVGAGGGLGSLATQYAKAMGLHVIAIDGGPEKGESCKKLG-AEVYVDYLKSKDLVA 339486
Query: 143 LVRAAAPKGV 152
V+AA G+
Sbjct: 339485 DVKAATADGL 339456
>gb|AE015451.1| Pseudomonas putida KT2440 complete genome
Length = 6181863
Score = 99.8 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 67/164 (40%), Positives = 91/164 (55%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V VG GVS +G RVA+ GG G+Y+ + + L+++PD ++ QAA
Sbjct: 82945 GTEAAGVVEAVGEGVSRLKVGDRVAHAGGP--LGAYSEVHTLPEANLVKLPDTISFEQAA 82772
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
AV+ +GLT YL+ +Y G ++ HAAAGG G L CQ AK GA++IG AEKA
Sbjct: 82771 AVMLKGLTVQYLLKQTYEVKAGDVILFHAAAGGVGSLACQWAKALGAKLIGTVSSAEKAE 82592
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
A ++G A IDY ++ K VYDGVG T+
Sbjct: 82591 RAKALG-AWATIDYSREDVAKRVLELTDGKKCPVVYDGVGADTW 82463
Score = 79.0 bits (193), Expect = 5e-13, Method: Composition-based stats.
Identities = 59/164 (35%), Positives = 89/164 (54%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G EGAG V +G GV +G RVAY +G G+YA+ + A L+ +P + D AA
Sbjct: 4098505 GLEGAGRVSAIGDGVHNVQVGDRVAY--AMGPVGAYASGRLFPAERLVPLPPQLEDEAAA 4098332
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
AVL +G+TA YL+ ++Y GPG+ V+++ AAG G L+ A+ GA VIG+ +
Sbjct: 4098331 AVLFKGITAQYLLKTTYAVGPGTQVLLYGAAGALGQLMVPWARHLGATVIGVVSRLQSVE 4098152
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
A + G V++ + A + +GV VYD VG+ +
Sbjct: 4098151 RARAAGCQHVLV-FDAKTLASQVRELTQGQGVAVVYDCVGKVSL 4098023
Score = 62.0 bits (149), Expect = 6e-08, Method: Composition-based stats.
Identities = 61/181 (33%), Positives = 79/181 (43%), Gaps = 19/181 (10%)
Frame = -1
Query: 3 EGAGTVVKVGPGVSETMLGKRV------------------AYFGGVGCTGSYAAFTVVQA 44
+GAG VV VG GV+E +G V A G G G +A
Sbjct: 5420907 DGAGEVVAVGAGVTEFQVGDNVVSTFFPDWLDGQANVEGFARVPGDGIDGYAREQVTARA 5420728
Query: 45 SALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKL 104
+A P G + A+AA + GLTA + S PG TV+V GG + Q AKL
Sbjct: 5420727 TAFTLAPQGFSHAEAATLTTAGLTAWRALMSDDHLKPGDTVLVQ-GTGGVSIFALQFAKL 5420551
Query: 105 RGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRA-AAPKGVDAVYDGVGQAT 163
GA VI K ++G AD +I+Y +TP W VR +GVD V + G AT
Sbjct: 5420550 AGATVIATSSSDAKLERLKALG-ADHLINYKSTPAWGEKVRELTGNRGVDHVIEVGGPAT 5420374
Query: 164 F 164
Sbjct: 5420373 L 5420371
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 42/101 (41%), Positives = 55/101 (54%)
Frame = -2
Query: 60 AAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKA 119
+A+ G+TA++ + G TVV+ AAG G +V Q+AK++G RV+GI GGAEK
Sbjct: 2042180 SALGMTGMTAYFALLEVGQPKAGDTVVISGAAGAVGSIVGQIAKIKGCRVVGIAGGAEKC 2042001
Query: 120 MLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
D VIDY A L R PKGVD +D VG
Sbjct: 2042000 QYLKDELGFDGVIDYKAEDVLAGLKR-ECPKGVDVYFDNVG 2041881
Score = 59.3 bits (142), Expect = 4e-07, Method: Composition-based stats.
Identities = 53/164 (32%), Positives = 73/164 (44%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V VG +G RV G G++A V +L +P + AA
Sbjct: 5942789 GGEAAGVVAAVGEKAGAFKVGDRVMALTG---WGAFAEQVAVPFYNVLPIPASMDFTTAA 5942959
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A T+ + + G T++V A+GG GL ++ K GARVI AEK
Sbjct: 5942960 AFGMTYGTSMHALRQRGQLQAGETLLVLGASGGVGLAAVEIGKAMGARVIAAASSAEKLA 5943139
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
+A + G AD +IDY + R +GVD +YD VG F
Sbjct: 5943140 VAKAAG-ADELIDYSQANLREEIKRLTGGQGVDVIYDPVGGELF 5943268
Score = 57.8 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 39/100 (39%), Positives = 54/100 (54%), Gaps = 1/100 (1%)
Frame = +1
Query: 66 GLTAHY-LVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATS 124
G TA+ L+D P G T+VV AA G G V Q+ K++G V+G+ GGAEK A
Sbjct: 2822824 GFTAYMGLLDIGRP-QAGETLVVAAATGPVGATVGQIGKIKGCHVVGVAGGAEKCRHAVE 2823000
Query: 125 VGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
V D +D+ A PD+ + A P G+D ++ VG F
Sbjct: 2823001 VLGFDACLDHRA-PDFAEQLAKACPAGIDIYFENVGGKVF 2823117
Score = 49.7 bits (117), Expect = 3e-04, Method: Composition-based stats.
Identities = 49/146 (33%), Positives = 70/146 (47%), Gaps = 1/146 (0%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRV-AYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQA 59
G + AG V +VG V+ G V A +G TG+ A F VV SA P ++ QA
Sbjct: 3386361 GSDLAGIVTEVGSNVTRFKPGDAVFASLFDLG-TGAIAEFAVVPESAAALKPANLSFEQA 3386537
Query: 60 AAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKA 119
A++ GLT+ + G V + A +GG G Q+AK GA+V G
Sbjct: 3386538 ASIPMVGLTSWQALKERLKLQAGQKVFIPAGSGGIGTFAIQLAKHLGAKV-GTTTSTGNV 3386714
Query: 120 MLATSVGRADVVIDYVATPDWPPLVR 145
L ++G AD V+DY T D+ ++R
Sbjct: 3386715 DLVRALG-ADEVVDY-KTQDFETVLR 3386786
Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 44/141 (31%), Positives = 67/141 (47%), Gaps = 5/141 (3%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G + AG +VG V+ G +V Y G + GSY+ + +V + P + AQAA
Sbjct: 3357136 GWDAAGVDREVGRQVTLFKPGDQVYYAGSIARPGSYSEYHLVDERIVGHQPRSLGAAQAA 3357315
Query: 61 AVLCQGLTAHYLVDSSYPC----GPGSTVVVHAAAGGTGLLVCQMAK-LRGARVIGICGG 115
A+ +TA L+ G G +++ AAGG G ++ Q+A+ L VIG
Sbjct: 3357316 ALPLTAITAWELLFDRLGIAEGGGEGDALLIVGAAGGVGSMLVQLARQLTRLTVIGTASR 3357495
Query: 116 AEKAMLATSVGRADVVIDYVA 136
AE + +G A VID+ A
Sbjct: 3357496 AETSNWVRELG-AHHVIDHSA 3357555
Score = 45.1 bits (105), Expect = 0.008, Method: Composition-based stats.
Identities = 45/158 (28%), Positives = 70/158 (44%), Gaps = 25/158 (15%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKR--VAYF-----------------------GGVGCTGS 35
G EG G V +VGPGV+ G R VA+F G G
Sbjct: 4363081 GHEGIGVVQEVGPGVTSLKPGDRASVAWFYQGCGHCEYCNSGNETLCRDVKNSGYTVDGG 4363260
Query: 36 YAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTG 95
A +V+A ++VPDG+ A A+++ C G+T + V S PG + ++ G
Sbjct: 4363261 MAEACIVKADYSVKVPDGLDSAAASSITCAGVTTYKAVKIS-NVRPGQWIAIYGLGGLGN 4363437
Query: 96 LLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVID 133
L + + A+VI I E+ A+ +G AD+V++
Sbjct: 4363438 LALQYAKNVFNAKVIAIDVNEEQLRFASEMG-ADLVVN 4363548
Score = 38.1 bits (87), Expect = 0.92, Method: Composition-based stats.
Identities = 54/166 (32%), Positives = 76/166 (45%), Gaps = 2/166 (1%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRV-AYFGGVG-CTGSYAAFTVVQASALLEVPDGVTDAQ 58
G + AGTVV++G V G+ V GG+G G+ A + V A + P + +
Sbjct: 3365522 GLDLAGTVVELGEAVDGFTPGQEVFGMAGGIGGAQGTLAEYIAVDARLIASKPHALGMRE 3365701
Query: 59 AAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEK 118
AAA+ +TA + G V++H AGG G + Q+AK RGA V G A
Sbjct: 3365702 AAALPLVFITAWEGLVDHANVRSGQRVLIHGGAGGVGQVAVQLAKARGAEVYAT-GSAGS 3365878
Query: 119 AMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
S+G IDY A + + A +G D VYD VG +T
Sbjct: 3365879 LDFIRSLGAT--AIDYQAQGVEAYVEQYTAGEGFDIVYDTVGGSTL 3366010
Score = 37.4 bits (85), Expect = 1.7, Method: Composition-based stats.
Identities = 40/132 (30%), Positives = 61/132 (46%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E +G V +VG G + +G RV + +G+ A VV A +L VP+G+ +AA
Sbjct: 1920731 GLECSGVVEEVGAGAA-WRVGDRVC---ALLASGAMAEEVVVDARHVLPVPEGLGLHEAA 1920898
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A+ TA + G V+VHA A G G Q+ K G+ V G ++
Sbjct: 1920899 ALPEVYATAWLNIFQLGAVKAGEKVLVHAGASGVGSAAIQLCKAFGSPVWVSVGSQDRLA 1921078
Query: 121 LATSVGRADVVI 132
++G A V+
Sbjct: 1921079 YCQALGAAGGVV 1921114
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
Length = 5013479
Score = 99.8 bits (247), Expect = 3e-19, Method: Composition-based stats.
Identities = 75/166 (45%), Positives = 91/166 (54%), Gaps = 1/166 (0%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V VG GV G RVA+ GG GC YA VV A L+ +PD ++D AA
Sbjct: 3413492 GVEAAGRVEAVGAGVDHVRPGDRVAFVGGPGC---YAEARVVPADRLVRLPDAISDRTAA 3413322
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+ +GLTA L+ +YP G TV+ HAAAGG GL+ Q K GA VIG G EKA
Sbjct: 3413321 GAMLKGLTAQVLIRRTYPVKAGDTVLWHAAAGGVGLIAIQWLKALGATVIGTVGSDEKAA 3413142
Query: 121 LATSVGRADVVIDYVATPDWPPLVRA-AAPKGVDAVYDGVGQATFA 165
LA + G VV+ D+ VR +GV VYD VG+ TFA
Sbjct: 3413141 LARAHGCDHVVV--YTREDFVARVRELTGGEGVPVVYDSVGKTTFA 3413010
Score = 72.4 bits (176), Expect = 5e-11, Method: Composition-based stats.
Identities = 63/188 (33%), Positives = 87/188 (46%), Gaps = 24/188 (12%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGC------------------------TGSY 36
G + AG V VGPGV E +G V G+ C +G
Sbjct: 3221528 GSDVAGVVDAVGPGVDEPRVGAEVVLAPGLSCGRCVRCRSGEENLCRGYAILGEHVSGGQ 3221349
Query: 37 AAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGL 96
A VV A L P ++ +AAAV LTA + + + PG TV+VHAA G G+
Sbjct: 3221348 AEAVVVPARNALPRPPNLSFEEAAAVPLTFLTAWHALVARARVRPGETVLVHAAGSGVGV 3221169
Query: 97 LVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVY 156
Q+AKL GARVI G K A ++G AD V++Y A + R +GV+ V+
Sbjct: 3221168 AAVQIAKLHGARVIATAGSDAKLERARALG-ADEVVNYEAKDFVQEVKRLTQRRGVEVVF 3220992
Query: 157 DGVGQATF 164
+ VG+ T+
Sbjct: 3220991 EHVGRKTW 3220968
Score = 64.3 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 59/164 (35%), Positives = 77/164 (46%), Gaps = 2/164 (1%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGV--GCTGSYAAFTVVQASALLEVPDGVTDAQ 58
G + +G V VGPGV G V Y + GSYA V A+ + P +T Q
Sbjct: 3170973 GYDASGVVEAVGPGVKGFAPGDEVFYTPEIFGNALGSYAERNAVAAAIVAHKPARLTHVQ 3171152
Query: 59 AAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEK 118
AAA+ G TA+ V PG T++V AGG G Q+ + GARVI G A +
Sbjct: 3171153 AAAIPLAGGTAYEAVVRRLQVRPGETLLVQGGAGGVGSFAVQLGRACGARVIATAGNANQ 3171332
Query: 119 AMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQA 162
A L ++G ADV +DY + GVDAV+ VG A
Sbjct: 3171333 ATL-RALG-ADVCLDYERDDLAGAVREETGGAGVDAVFSTVGGA 3171458
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 57/163 (34%), Positives = 81/163 (49%), Gaps = 18/163 (11%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRV------------------AYFGGVGCTGSYAAFTVV 42
+GAG VV++GPGV+ +G+RV A GG G + V+
Sbjct: 4054472 ASDGAGEVVEIGPGVTGAAVGERVIASIFPRWRDGPFRRETAAQLGG-SLDGMLTEYAVL 4054648
Query: 43 QASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMA 102
A AL+ +P ++ +AAA+ C G TA + P G TV+ +GG LL Q+A
Sbjct: 4054649 PAEALVRIPPHLSFEEAAALPCAGATAWNALTGGRPLSAGETVLT-LGSGGVSLLALQLA 4054825
Query: 103 KLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVR 145
+ GAR + GA +A +++G AD VID ATPDW VR
Sbjct: 4054826 RSAGARTLVTTSGAARAARLSALG-ADEVIDREATPDWAAEVR 4054951
Score = 49.7 bits (117), Expect = 3e-04, Method: Composition-based stats.
Identities = 41/126 (32%), Positives = 60/126 (47%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V VG GV+ G RV + + A +V L+ +PD ++ +A
Sbjct: 4692672 GLELAGEVAAVGAGVTAWKPGDRVM---AIAAGEAQAELCLVHERMLVRIPDRLSFEEAG 4692842
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A+ G+T+H + + PG V++HA G Q+AK GA VIG AEK
Sbjct: 4692843 AIPEAGMTSHDALFTLGGLRPGWPVLIHAVGSGVSTAAVQIAKAAGATVIGTSRTAEKLE 4693022
Query: 121 LATSVG 126
A ++G
Sbjct: 4693023 RARALG 4693040
Score = 45.4 bits (106), Expect = 0.007, Method: Composition-based stats.
Identities = 49/130 (37%), Positives = 66/130 (50%), Gaps = 2/130 (1%)
Frame = +2
Query: 33 TGSYAAFTVVQASALLEVPDGVTDAQAAAVL-CQGLTA-HYLVDSSYPCGPGSTVVVHAA 90
T + + + L+ + D + A VL G TA H L++ P PG TVVV AA
Sbjct: 3617534 TSGWQDYALSDGQDLVPLADTAHPSYALGVLGMPGFTAYHGLLNIGQP-RPGETVVVAAA 3617710
Query: 91 AGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPK 150
+G G +V Q+AKLRGAR +GI GGAEK T D +D A P + A P
Sbjct: 3617711 SGAVGAVVGQLAKLRGARAVGITGGAEKCRYVTEELGFDACLDRHA-PHLAERLAGACPA 3617887
Query: 151 GVDAVYDGVG 160
G+D ++ VG
Sbjct: 3617888 GIDVYFENVG 3617917
Score = 37.7 bits (86), Expect = 1.1, Method: Composition-based stats.
Identities = 43/153 (28%), Positives = 55/153 (35%), Gaps = 27/153 (17%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRV-------------------------AYFGGVGCTGS 35
G E G V +VGPGV+ G R+ A F G G
Sbjct: 1631091 GHEIVGRVDRVGPGVTRFKAGDRIGVPWLGWTCGRCAACRSGRENLCSAARFTGYHLDGG 1630912
Query: 36 YAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTG 95
YA V A +P DA AA +LC GL H ++ G+ + G
Sbjct: 1630911 YAELAVADARYAFAIPGDYEDADAAPLLCAGLIGH----RAWAPVRGAQRLGLYGFGAAA 1630744
Query: 96 LLVCQMAKLRGARVIGI--CGGAEKAMLATSVG 126
LV Q+A+ G RV G AE A +G
Sbjct: 1630743 HLVVQLARHAGQRVFAFTRAGDAEAQAFALQLG 1630645
Score = 37.4 bits (85), Expect = 1.8, Method: Composition-based stats.
Identities = 55/181 (30%), Positives = 75/181 (41%), Gaps = 21/181 (11%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAY--------------------FGGVGCTGSYAAFT 40
G + AG V VG GV+ G RVA GG G A +
Sbjct: 865972 GSDAAGEVAAVGEGVTRVRPGDRVALTFQQAWISGRPDPAALHASTLGGPR-EGVLAEYA 865796
Query: 41 VVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQ 100
+ A ++ P+ +T A+A+ + G+TA + + GPGS VVV G + Q
Sbjct: 865795 LADAEGVVRYPEHLTFAEASTLPIAGVTAWQALFTEAQVGPGSVVVVQGTGGVAAFAI-Q 865619
Query: 101 MAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRA-AAPKGVDAVYDGV 159
+A++ GARVI A K A ++G D ID P W V A G D V D
Sbjct: 865618 LARVAGARVIITSRSAAKLERARALGAHD-GIDTGVEPAWDERVLALTGGTGADVVVDVA 865442
Query: 160 G 160
G
Sbjct: 865441 G 865439
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
Length = 7036071
Score = 99.8 bits (247), Expect = 3e-19, Method: Composition-based stats.
Identities = 67/164 (40%), Positives = 92/164 (56%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V +VG GV G R+AY VG +YA V+ A ++++PDG++D QAA
Sbjct: 374372 GSEAAGVVREVGEGVDWLKPGDRIAYSTNVG---AYAEQRVIAAGLVVKIPDGISDEQAA 374202
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A++ +G+TA YL+ ++ G T++ HAAAGG GL++ Q AK GA VIG +K
Sbjct: 374201 AMMLKGMTAEYLLRRTFKVKAGDTILFHAAAGGVGLILGQWAKHLGATVIGTASSTDKIE 374022
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
LA + G D VI+Y + K D VYD VG TF
Sbjct: 374021 LAKAHG-FDHVINYREQDFVAGVAAITGGKKCDVVYDSVGNDTF 373893
Score = 90.5 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 76/169 (44%), Positives = 96/169 (56%), Gaps = 4/169 (2%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVA--YFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQ 58
G E AG V VG GV LG+RVA F G YA + A + +PD V+
Sbjct: 2099010 GVEVAGIVEAVGEGVDAAFLGRRVAAPLFASQRPYGGYAEQVTISADLTVPLPDDVSFEA 2098831
Query: 59 AAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRG-ARVIGICGGAE 117
A A++ QGLTA +L+ S P G TV+V AAAGG G L+ Q+AK +G A+VI GGA
Sbjct: 2098830 ATALMVQGLTALHLLRQSPP--EGRTVLVPAAAGGVGSLLVQLAKAKGAAKVIAAAGGAG 2098657
Query: 118 KAMLATSVGRADVVIDYVATPDWPPLVRA-AAPKGVDAVYDGVGQATFA 165
K LA S+G AD +DY+ + DWP VRA +G D +YD VG A A
Sbjct: 2098656 KIELALSLG-ADAAVDYIGS-DWPARVRALTGGEGADIIYDTVGGALTA 2098516
Score = 65.9 bits (159), Expect = 4e-09, Method: Composition-based stats.
Identities = 62/180 (34%), Positives = 84/180 (46%), Gaps = 17/180 (9%)
Frame = -1
Query: 3 EGAGTVVKVGPGVSETMLGKRV--AYFG-------------GVGCT--GSYAAFTVVQAS 45
+GAG VV +G V+ +G RV +YF +GCT G A + V+
Sbjct: 6726813 DGAGDVVAIGDAVTRFAVGDRVTGSYFARWIDGRINAGLIDQLGCTLDGMLAEYAVLDEQ 6726634
Query: 46 ALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLR 105
+PD + +AA + C G+TA V + PG V+V +GG L Q AKL
Sbjct: 6726633 WAARLPDHLDWHEAATLSCAGVTAWNAVTGAGIPKPGQWVLV-IGSGGVSLFALQFAKLL 6726457
Query: 106 GARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATFA 165
G RV + EKA ++G AD+VI P+W VR GVD V + G ATFA
Sbjct: 6726456 GCRVAAVTSRGEKADRLRTLG-ADLVISTSDMPEWGAAVRDQT-GGVDLVVETGGPATFA 6726283
Score = 64.3 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 52/133 (39%), Positives = 66/133 (49%), Gaps = 1/133 (0%)
Frame = +1
Query: 34 GSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGG 93
G + + + A A + P G T A+AAA+ C G+TA + S PG TV+V G
Sbjct: 1572472 GFASEYVCMPAQAFTKAPAGYTHAEAAALTCTGVTAWRGLVVSGKVKPGDTVLV-LGTGS 1572648
Query: 94 TGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRA-AAPKGV 152
L Q AK GARVI EK + +G AD VI+Y A PDW VR +GV
Sbjct: 1572649 VSLFALQFAKAAGARVIATSSDEEKLERLSRLG-ADAVINYKAVPDWSRKVRELTGGRGV 1572825
Query: 153 DAVYDGVGQATFA 165
D V + G AT A
Sbjct: 1572826 DHVIEVGGPATLA 1572864
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 59/182 (32%), Positives = 86/182 (47%), Gaps = 19/182 (10%)
Frame = -2
Query: 3 EGAGTVVKVGPGVSETMLGKRVAYFG------------------GVGCTGSYAAFTVVQA 44
+GAG +V +G GV+ +G RV G+ GS A + + A
Sbjct: 1586234 DGAGEIVALGEGVTSFSMGDRVVAHAKPRWIGGRPRPYEMTQMRGISLPGSLAEYVALPA 1586055
Query: 45 SALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKL 104
++L+ VP ++ A+ + G TA + ++ GPGS VVV GG + Q+AK
Sbjct: 1586054 NSLVPVPAHLSFEAASTLPIAGTTAWNALRTA-NVGPGS-VVVLLGTGGVSIFTLQLAKA 1585881
Query: 105 RGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWP-PLVRAAAPKGVDAVYDGVGQAT 163
GA VI EK A ++G AD +I+Y ATPDW ++ G D V + G AT
Sbjct: 1585880 AGATVIITSSSDEKLERAKALG-ADHLINYRATPDWDGKVLELTGGLGADLVVETGGTAT 1585704
Query: 164 FA 165
FA
Sbjct: 1585703 FA 1585698
Score = 61.6 bits (148), Expect = 8e-08, Method: Composition-based stats.
Identities = 60/191 (31%), Positives = 83/191 (43%), Gaps = 26/191 (13%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGC-------------------------TGS 35
G E +G V VGPGVS + G+ V+ +G C G
Sbjct: 990431 GAEASGEVEAVGPGVSSLLPGQLVSIYGARTCGLCRACREGRDNLCEHVSGVHGFHLDGF 990610
Query: 36 YAAFTVVQASALLEVPDGVTDAQAA-AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGT 94
+ A L+ P GV+D AA A + G H L D++ PG T++VHA G
Sbjct: 990611 AQEKINLPARLLVPAPPGVSDIGAAVAPVTFGTVEHMLFDNAR-LQPGETILVHAGGSGI 990787
Query: 95 GLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDA 154
G Q+AK G +I G +K A ++G AD VI+Y + + KGVD
Sbjct: 990788 GSAAIQLAKRMGCTIITTVGSNDKIDKAKALG-ADHVINYREDRFEGVVRKLTKKKGVDV 990964
Query: 155 VYDGVGQATFA 165
V++ VG TFA
Sbjct: 990965 VFEHVGADTFA 990997
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 49/160 (30%), Positives = 69/160 (43%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E +G V +G +S +G RV + G YA + V + ++L +P G T +AA
Sbjct: 3032103 GLEVSGEVAALGDEISRWRIGDRVC---ALTPGGGYAEYVKVHSGSVLPLPAGFTHTEAA 3031933
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
AV T + V G T++VH + G G Q+A GA VI G EK
Sbjct: 3031932 AVPENYFTVWHNVFERGALKKGETLLVHGGSSGIGTTAIQLASAFGAYVITTAGSKEKCD 3031753
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
+G AD I+Y + A KG + D VG
Sbjct: 3031752 ACLKLG-ADRAINYREEDFVTAVKEATDGKGATVILDMVG 3031636
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 56/182 (30%), Positives = 81/182 (44%), Gaps = 18/182 (9%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAY----------------FGGVGCTGSYAAFTVVQA 44
G + GT+V VG GVS +G+RV + G G G YA + V A
Sbjct: 5883694 GTDTVGTIVSVGEGVSPERIGERVMVDFSIYNRDDDSLADIDYMGHGRDGGYAEYQTVPA 5883515
Query: 45 SALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKL 104
V ++D + A C LT +++ + G V+V A+GG G + Q+A+
Sbjct: 5883514 ENAHVVDTDMSDVELATFCCAYLTGEQMLERA-GLKAGERVLVTGASGGVGSGIVQLARA 5883338
Query: 105 RGARVIGICG-GAEKAMLATSVGRADVVIDYVATPDWPPLV-RAAAPKGVDAVYDGVGQA 162
RGA + G G E+A+L +G V+ VA D P V + +D V D VG A
Sbjct: 5883337 RGAIPYAVVGKGKEQAVL--DIGAEAVITRGVA--DLPRAVAEVTGGQPIDVVADLVGGA 5883170
Query: 163 TF 164
F
Sbjct: 5883169 IF 5883164
Score = 48.9 bits (115), Expect = 5e-04, Method: Composition-based stats.
Identities = 55/189 (29%), Positives = 75/189 (39%), Gaps = 26/189 (13%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCT------------------------GSY 36
G E AG VV G VS G RV VGC GS+
Sbjct: 952331 GHELAGVVVAAGKQVSRWKAGDRVTVPFAVGCGRCFECSSGNHQVCEHQTQPGFTGWGSF 952510
Query: 37 AAFTVVQA--SALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGT 94
A + ++ + L+ +PD + A AA++ C+ +T+ + PG V VH GG
Sbjct: 952511 AEYVGIEHADTNLVRLPDEMEYATAASLGCRFVTSFRAIVDQGRVKPGEWVAVH-GCGGV 952687
Query: 95 GLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDA 154
GL +A GA VI I EK A +G A I+ TP+ V+ A G
Sbjct: 952688 GLSAIMIASSMGANVIAIDLTDEKLEFARKIG-AVATINASTTPNVVKAVKQIANGGAHM 952864
Query: 155 VYDGVGQAT 163
D +G T
Sbjct: 952865 SMDALGHPT 952891
Score = 48.5 bits (114), Expect = 8e-04, Method: Composition-based stats.
Identities = 49/137 (35%), Positives = 62/137 (45%), Gaps = 3/137 (2%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGV---GCTGSYAAFTVVQASALLEVPDGVTDA 57
G + +GTV +G GV+ +G V FG +YA VV A + P
Sbjct: 2258836 GWDISGTVEALGAGVTGLKVGDEV--FGMPRFPKQAAAYAELAVVPADEVAPKPKAADHI 2259009
Query: 58 QAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAE 117
QA A+ GLTA + G V+VHAAAGG G L Q+AK RGA VI +
Sbjct: 2259010 QAGALPLAGLTAWQGLVRHGALKSGQRVLVHAAAGGVGHLAVQIAKARGAYVIAT--ASP 2259183
Query: 118 KAMLATSVGRADVVIDY 134
+ AD VIDY
Sbjct: 2259184 NKLDFVRKLSADEVIDY 2259234
Score = 45.8 bits (107), Expect = 0.004, Method: Composition-based stats.
Identities = 50/167 (29%), Positives = 70/167 (41%), Gaps = 3/167 (1%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYF--GGVGCTGSYAAFTVVQASALLEVPDGVTDAQ 58
G E AG V VG GV + + G V+ + C +Y A +++ P +
Sbjct: 5914540 GLEAAGVVETVGEGVKDFVPGDAVSVIPPQSMVCWPAYGEVVAYPAGLIVKHPSSLDWQT 5914361
Query: 59 AAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEK 118
AAAV Q LTA+ + G VV+ AA+ GL Q+A GA I + + K
Sbjct: 5914360 AAAVWMQYLTAYGALIDIARLSSGDAVVITAASSSVGLAAIQIANKIGATAIAVTRTSVK 5914181
Query: 119 AMLATSVGRADVVIDYVATPDWPP-LVRAAAPKGVDAVYDGVGQATF 164
G A VV+ +A D L A P+ V V D +G F
Sbjct: 5914180 KQALLDAGAAHVVV--LAEEDLAARLSEIAGPQAVRVVLDAIGGPIF 5914046
Score = 43.1 bits (100), Expect = 0.026, Method: Composition-based stats.
Identities = 41/134 (30%), Positives = 62/134 (46%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G + AG VV+ G + LG V G G++A + + + P ++ +AA
Sbjct: 1729014 GHDVAGIVVRAGSKARKFKLGDEVYARSRDGRIGTFAQSIAMDEADVALKPKNLSMEEAA 1728835
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
++ GLTA ++ + G V + A +GG G Q+AK GA V A A
Sbjct: 1728834 SIPLVGLTAWQVLVETAGLKKGQKVFIQAGSGGVGTFAIQLAKHLGATVATT-ASAANAD 1728658
Query: 121 LATSVGRADVVIDY 134
L +G AD+VIDY
Sbjct: 1728657 LVKGLG-ADIVIDY 1728619
Score = 41.6 bits (96), Expect = 0.078, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 37/61 (60%)
Frame = +1
Query: 100 QMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGV 159
Q+A+++GAR +GI GGA+K D V+D+ A ++ ++AA P G+D ++ V
Sbjct: 5633626 QIARIKGARAVGIAGGADKCAFVRRELGFDAVVDHRAD-NFAEQLKAACPDGIDVYFENV 5633802
Query: 160 G 160
G
Sbjct: 5633803 G 5633805
Score = 35.0 bits (79), Expect = 8.2, Method: Composition-based stats.
Identities = 39/132 (29%), Positives = 59/132 (44%), Gaps = 5/132 (3%)
Frame = +2
Query: 29 GVGCT--GSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCG---PGS 83
GVG T G+YA V+ L+ +P+G++ A AV G TA V + G
Sbjct: 2568725 GVGETHFGAYAGRARVKGDWLVPLPEGISAHDAMAVGTAGYTAMLCVMALERHGILPDRG 2568904
Query: 84 TVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPL 143
VVV AAGG G + + G VI G ++ ++G A+V+ + PL
Sbjct: 2568905 PVVVTGAAGGVGSVAVSILSSLGYHVIASTGRNAESPYLINLGAAEVISRDELSQPAKPL 2569084
Query: 144 VRAAAPKGVDAV 155
+ G+D+V
Sbjct: 2569085 AKERWAGGIDSV 2569120
>emb|AM167904.1| Bordetella avium 197N complete genome
Length = 3732255
Score = 99.8 bits (247), Expect = 3e-19, Method: Composition-based stats.
Identities = 67/164 (40%), Positives = 90/164 (54%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G EGAG V VG V +G RVAY G G+YA V A ++++P GV+ +AA
Sbjct: 2348229 GFEGAGEVEAVGADVKHIKVGDRVAY--GQSPLGAYAQARNVPADQVVKLPKGVSFEEAA 2348056
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A++ +GLT YL +Y G T++ HAAAGG GL+ CQ AK G ++IG EKA
Sbjct: 2348055 ALMLKGLTVQYLFRQTYRLQGGETILFHAAAGGVGLIACQWAKALGVKLIGTVSSPEKAE 2347876
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
LA + G + IDY ++ K V VYDGVG+ T+
Sbjct: 2347875 LARAYGAWE-TIDYSRENVAERVLELTGGKKVPVVYDGVGKDTW 2347747
>emb|AM286415.1| Yersinia enterocolitica subsp. enterocolitica 8081 complete genome
Length = 4615899
Score = 99.4 bits (246), Expect = 3e-19, Method: Composition-based stats.
Identities = 65/164 (39%), Positives = 87/164 (53%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V KVG V+ +G RV Y G+Y+ V A + +P+ ++ QAA
Sbjct: 4199921 GTEAAGIVTKVGAAVNSLKVGDRVVY--AQSTLGAYSEIHNVAAEKVALLPEQISFEQAA 4200094
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A +GLT YL+ +Y PG + HAAAGG GL+ CQ AK GAR+IG G EKA
Sbjct: 4200095 ASFLKGLTVQYLLRQTYEIKPGQVFLFHAAAGGVGLIACQWAKALGARLIGTVGSDEKAE 4200274
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
LA + G A I+Y + + VD VYD VG++T+
Sbjct: 4200275 LAKANG-AWATINYRTENIAERVAELTNGEKVDVVYDSVGKSTW 4200403
Score = 59.3 bits (142), Expect = 4e-07, Method: Composition-based stats.
Identities = 42/100 (42%), Positives = 55/100 (55%), Gaps = 1/100 (1%)
Frame = +2
Query: 66 GLTAHY-LVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATS 124
G TA+ L+D P G T+VV AA+G G +V Q+ KL+G +VIGI GGAEK
Sbjct: 2779010 GFTAYMGLLDIGQP-KAGETLVVAAASGAVGSVVGQIGKLKGCKVIGIAGGAEKCRYVVE 2779186
Query: 125 VGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
D ID+ AT D+ + A G+D Y+ VG A F
Sbjct: 2779187 ELGFDACIDHRAT-DFAQQLEKACSAGIDIYYENVGGAVF 2779303
Score = 48.9 bits (115), Expect = 6e-04, Method: Composition-based stats.
Identities = 36/129 (27%), Positives = 60/129 (46%)
Frame = +2
Query: 29 GVGCTGSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVH 88
G+ G YA + V+ + L +P +T+ +AAA+ T + G TV++H
Sbjct: 2793377 GLIAGGGYAQYCVIHETNALFIPPSLTEIEAAALPETFFTVWTNLFQRGHFTAGETVLIH 2793556
Query: 89 AAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAA 148
+ G G ++K GA+++ + G+E+ A AD+ I+Y RA A
Sbjct: 2793557 GGSSGIGTTAILLSKAFGAKMVIVTVGSEEKRQACLTLGADIAINYHTEDFVTETKRATA 2793736
Query: 149 PKGVDAVYD 157
KGVD + D
Sbjct: 2793737 GKGVDVIVD 2793763
>gb|CP000438.1| Pseudomonas aeruginosa UCBPP-PA14, complete genome
Length = 6537648
Score = 99.4 bits (246), Expect = 3e-19, Method: Composition-based stats.
Identities = 66/164 (40%), Positives = 87/164 (53%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G EGAG V VG V+ +G RVAY G G+Y+ V+ L+ +PDG+ QAA
Sbjct: 25383 GSEGAGEVEAVGSEVTRFKVGDRVAY--ATGPLGAYSELHVLAEEKLVHLPDGIDFEQAA 25210
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
AV+ +GLT YL+ +Y G T++ HAAAGG GL CQ AK G ++IG EKA
Sbjct: 25209 AVMLKGLTTQYLLRQTYELRGGETILFHAAAGGVGLFACQWAKALGVQLIGTVSSPEKAR 25030
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
LA G + IDY ++ K VYD VG+ T+
Sbjct: 25029 LARQHGAWE-TIDYSHENVARRVLELTDGKKCPVVYDSVGKDTW 24901
Score = 98.2 bits (243), Expect = 7e-19, Method: Composition-based stats.
Identities = 68/164 (41%), Positives = 96/164 (58%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G EGAG V +GPGVS G RVAY G G+YA+ + A LL++PD + AA
Sbjct: 2554646 GLEGAGVVAALGPGVSGLAPGDRVAY--ATGPLGAYASARLYPAERLLKLPDTLAFEDAA 2554473
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A+L +G+TAHYL+ ++YP GPG+ ++++ AAG G L+ A+ GA VIG+ AE
Sbjct: 2554472 ALLFKGITAHYLLHATYPVGPGTRILLYGAAGAVGQLMAAWARHLGAWVIGVVSKAESVE 2554293
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
A + G D V+ + A + A + VD VYD +G+ATF
Sbjct: 2554292 RARAAG-CDEVLVFDAASLAAQVAELTAGRKVDVVYDPIGRATF 2554164
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 54/164 (32%), Positives = 76/164 (46%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V VG V+ G RV G GS+A V ++ +P+G+ A AA
Sbjct: 6164079 GGEAAGVVAAVGEKVAHVRPGDRVMALTG---WGSFAEQVKVPGYNVMPIPEGMDFASAA 6164249
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A T+ + + PG T++V A+GG GL ++ K GARVI +K
Sbjct: 6164250 AFGMTYGTSMHALKQRANLQPGETLLVLGASGGVGLAAVEIGKAMGARVIAAASTPDKLA 6164429
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
+A + G AD +I+Y L +GVD +YD VG F
Sbjct: 6164430 VAKAAG-ADELINYSEGSLREQLKALTGGQGVDVIYDPVGGELF 6164558
Score = 59.7 bits (143), Expect = 3e-07, Method: Composition-based stats.
Identities = 40/102 (39%), Positives = 56/102 (54%), Gaps = 1/102 (0%)
Frame = +1
Query: 60 AAVLCQGLTAHY-LVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEK 118
+A+ G+TA++ L+D P G TVV+ AAG G + Q+A+L+G RV+GI GGAEK
Sbjct: 3847966 SALGMTGMTAYFALLDVGQPKN-GETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEK 3848142
Query: 119 AMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
D IDY D ++ PKG+D +D VG
Sbjct: 3848143 CRFLVEELGFDGAIDY-KNEDLAAGLKRECPKGIDVFFDNVG 3848265
Score = 58.5 bits (140), Expect = 8e-07, Method: Composition-based stats.
Identities = 41/100 (41%), Positives = 54/100 (54%), Gaps = 1/100 (1%)
Frame = -1
Query: 66 GLTAHY-LVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATS 124
G TA+ L+D P G T+VV AA G G V Q+ KL+G RV+G+ GGAEK A
Sbjct: 3232152 GFTAYMGLLDIGKP-QAGETLVVGAATGPVGATVGQIGKLKGCRVVGVAGGAEKCRHAVQ 3231976
Query: 125 VGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
V D +D+ A D+ + A P G+D Y+ VG F
Sbjct: 3231975 VLGFDACLDHHAA-DFAERLAEACPDGIDIYYENVGGKVF 3231859
Score = 53.1 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 56/168 (33%), Positives = 76/168 (45%), Gaps = 4/168 (2%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAY-FGGVGCT--GSYAAFTVVQASALLEVPDGVTDA 57
G E G V++ G + +G+RVA GG+ + GSYA V S ++ +PD
Sbjct: 865751 GIEAVGEVLQDPAG--QFRVGQRVATAMGGMQFSRNGSYAEEVTVLRSNVVALPDSELSW 865578
Query: 58 QAAAVLCQG-LTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGA 116
+ A L Q LT +D S PG T++V A GL AK RG RV+ A
Sbjct: 865577 EELAALPQAYLTVWGALDRSLAIQPGQTLLVRGATSSVGLAALTYAKARGLRVLASTRSA 865398
Query: 117 EKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
E +G V ID + + AAAP+GVDA + VG T
Sbjct: 865397 EHTARLRQLGADQVFID---DGELCASILAAAPEGVDAALEVVGAPTL 865263
Score = 49.7 bits (117), Expect = 4e-04, Method: Composition-based stats.
Identities = 50/161 (31%), Positives = 69/161 (42%), Gaps = 1/161 (0%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRV-AYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQA 59
G E AGTV VG VS +G+ V A G G YA F V L +PDG+ +A
Sbjct: 4420917 GLEIAGTVRAVGSEVSRFAVGEAVMALIPG----GGYAQFAVADERTTLHLPDGLGMEEA 4421084
Query: 60 AAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKA 119
AA+ +T + G T++VH A G G + K GA I +E
Sbjct: 4421085 AALPETFMTVWVNLFQRGGFKAGETLLVHGGASGIGTAATMLGKAFGAAKIFTTISSEAQ 4421264
Query: 120 MLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
A+ AD+ I+Y ++R +GVD + D V
Sbjct: 4421265 REASLRLGADLAINYTEQDFVEEVLRGTEGRGVDVIVDIVA 4421387
Score = 48.1 bits (113), Expect = 8e-04, Method: Composition-based stats.
Identities = 54/169 (31%), Positives = 78/169 (46%), Gaps = 4/169 (2%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAY----FGGVGCTGSYAAFTVVQASALLEVPDGVTD 56
G + +G V VGPGV+ G V Y F G GSYA + + S + P ++
Sbjct: 1220944 GHDVSGVVEAVGPGVTAVAPGDEVWYTPQIFEG---QGSYAEYHLAAESIIGRKPAALSH 1220774
Query: 57 AQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGA 116
+AA++ G TA + + G +++VH AGG G + Q+AK GARV
Sbjct: 1220773 LEAASLSLVGGTAWEALVTRAALRVGESILVHGGAGGVGHVAIQLAKAMGARVFTTV--R 1220600
Query: 117 EKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATFA 165
E T ADV+IDY ++R GVD V+D +G T +
Sbjct: 1220599 EVNFEFTRQMGADVLIDYQKQDYVEAILRETGGHGVDVVFDSIGGDTLS 1220453
Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 54/159 (33%), Positives = 81/159 (50%), Gaps = 5/159 (3%)
Frame = +1
Query: 9 VKVGPGVSETMLGKRVAYFGG--VGCTGSYAAFTVVQASALLEVPDGVTDAQAAAVL-CQ 65
V G G++E + + ++ G V + F VV A+ L+ +P +V
Sbjct: 1331548 VMAGLGLAEVVESRSASFQPGDLVCAETGWQTFAVVPAAGLIRLPRLEPLTHLLSVYGVA 1331727
Query: 66 GLTAHY-LVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEK-AMLAT 123
GLTA++ L++ + P G T+ V AAAG G +V Q+A++RG R +GI GGA K A L
Sbjct: 1331728 GLTAYFGLLECARPV-QGETLAVSAAAGAVGSIVGQIARIRGCRTVGIAGGASKCAWLVR 1331904
Query: 124 SVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQA 162
+G D +DY T +R P G+DA +D G A
Sbjct: 1331905 ELG-FDAALDY-KTGTLADDLRRTCPDGIDAYFDNTGGA 1332015
Score = 40.0 bits (92), Expect = 0.26, Method: Composition-based stats.
Identities = 41/128 (32%), Positives = 56/128 (43%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V +VG G + + + A G G A VV A +L VP G++ A+AA
Sbjct: 1904560 GLECAGVVSEVGAGSTWQVGDRVCALLAG----GGMAEEVVVDARHVLPVPAGLSLAEAA 1904727
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+ TA + PG V++HA A G G Q+ K G G AE+
Sbjct: 1904728 GIPEVYATAWLNLFQLAALQPGEKVLLHAGASGVGSAGIQLCKAFGNPCWVSVGSAERLA 1904907
Query: 121 LATSVGRA 128
S+G A
Sbjct: 1904908 YCESLGAA 1904931
Score = 36.6 bits (83), Expect = 2.6, Method: Composition-based stats.
Identities = 40/130 (30%), Positives = 50/130 (38%), Gaps = 24/130 (18%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAY------------------------FGGVGCTGSY 36
G E G V +GPGV +G RVA F G+ G +
Sbjct: 943569 GHEFCGVVAALGPGVEGLRIGDRVAVEPEYRCGECRYCREGRYNLCESMGFIGLMGDGGF 943390
Query: 37 AAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGL 96
A V A L +PD V QAA + + H L SS PG V G GL
Sbjct: 943389 AERARVPAYMLHRLPDAVGFRQAAVLEPAAVALHALRRSSL--APGQRCAVF-GLGPIGL 943219
Query: 97 LVCQMAKLRG 106
L+ +A+LRG
Sbjct: 943218 LLVMLARLRG 943189
Score = 35.8 bits (81), Expect = 5.3, Method: Composition-based stats.
Identities = 34/124 (27%), Positives = 50/124 (40%), Gaps = 17/124 (13%)
Frame = +3
Query: 29 GVGCTGSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVV- 87
G+ G Y+ VV A +L +P G+ AA +LC G+T+ Y + GPGS V V
Sbjct: 3127884 GLPTFGGYSERIVVSARFVLRIPQGLDPKAAAPLLCAGITS-YSPLRHWKIGPGSRVAVV 3128060
Query: 88 -------------HAAAGGTGLLVCQMAKLRGARVIG---ICGGAEKAMLATSVGRADVV 131
A L K AR +G + + +A GR D++
Sbjct: 3128061 GLGGLGHMGLKFARALGAEVALFTRSPGKEEEARRLGADQVILSTDPQRMAAVAGRFDLI 3128240
Query: 132 IDYV 135
+D V
Sbjct: 3128241 LDTV 3128252
>gb|CP000304.1| Pseudomonas stutzeri A1501, complete genome
Length = 4567418
Score = 99.4 bits (246), Expect = 3e-19, Method: Composition-based stats.
Identities = 67/164 (40%), Positives = 91/164 (55%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G EGAG V VG GV G RVAY G G+YA + + A L+++PD ++ QAA
Sbjct: 28208 GTEGAGVVDAVGEGVQHLQPGDRVAY--ATGPLGAYAEYHTLPARHLVKLPDSISYEQAA 28035
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
AV+ +GLT YL+ ++ G TV+ HAAAGG G + CQ A GAR+IG+ G AEKA
Sbjct: 28034 AVMLKGLTCQYLLRQTHALQAGETVLFHAAAGGVGSIACQWAHALGARLIGVVGSAEKAA 27855
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
A ++G A ID ++ K VYD VG+ ++
Sbjct: 27854 RAKALG-AWATIDRSCEDVVQRVLELTEGKKCPVVYDSVGKNSW 27726
Score = 70.9 bits (172), Expect = 1e-10, Method: Composition-based stats.
Identities = 58/164 (35%), Positives = 76/164 (46%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V VG VS +G RV G GS+A V S L +P + A AA
Sbjct: 4432074 GGEAAGVVAAVGEKVSHLKVGDRVMALTG---WGSFAEQVAVAGSNALPIPPSMDFATAA 4432244
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A T+ + + PG T++V A+GG GL ++ K GARVI AEK
Sbjct: 4432245 AFSMTYGTSMHALKQRASLQPGETLLVLGASGGVGLAAVEIGKAVGARVIAAASSAEKLE 4432424
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
+A + G AD +I+Y L +GVD +YD VG F
Sbjct: 4432425 VARNAG-ADELINYSEVSLKERLKELTGGQGVDVIYDPVGGKLF 4432553
Score = 61.6 bits (148), Expect = 9e-08, Method: Composition-based stats.
Identities = 39/101 (38%), Positives = 55/101 (54%)
Frame = +2
Query: 60 AAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKA 119
+A+ G+TA++ + S G TVV+ AAG G + Q+AK++G RV+GI GGA+K
Sbjct: 2816549 SALGMTGMTAYFALLSVGQPKAGETVVISGAAGAVGSIAGQIAKIKGCRVVGIAGGADKC 2816728
Query: 120 MLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
T D IDY D ++ PKGVD +D VG
Sbjct: 2816729 RFLTEKLGFDGAIDY-KNEDLAAALKRECPKGVDVYFDNVG 2816848
Score = 58.9 bits (141), Expect = 5e-07, Method: Composition-based stats.
Identities = 56/182 (30%), Positives = 78/182 (42%), Gaps = 19/182 (10%)
Frame = -2
Query: 3 EGAGTVVKVGPGVSETMLGKRV------------------AYFGGVGCTGSYAAFTVVQA 44
+GAG VV VG GV+E +G V A G G G +A
Sbjct: 3087667 DGAGEVVAVGSGVTEFAVGDAVVSTFFPDWLAGEPLVEGFATVPGDGVDGYAREMVTARA 3087488
Query: 45 SALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKL 104
++ P G + A+A+ + GLTA + + PG +V++ GG + Q AK+
Sbjct: 3087487 TSFTHAPKGYSHAEASTLTTAGLTAWRALMADGKLKPGDSVLIQ-GTGGVSIFALQFAKM 3087311
Query: 105 RGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAP-KGVDAVYDGVGQAT 163
GA VI K +G AD +I+Y TP W VR +GVD V + G AT
Sbjct: 3087310 AGATVIATSSSDAKLERLREMG-ADHLINYRTTPAWGETVRELTDGRGVDHVIEVGGPAT 3087134
Query: 164 FA 165
A
Sbjct: 3087133 LA 3087128
Score = 52.8 bits (125), Expect = 4e-05, Method: Composition-based stats.
Identities = 48/166 (28%), Positives = 74/166 (44%), Gaps = 6/166 (3%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGG--VGCTGSYAAFTVVQASALLEVPDGVTDAQ 58
G E AG V+ VG GV +G +VA F + YA ++ AL+ PD ++ ++
Sbjct: 2353593 GSEVAGEVLAVGEGVQGFSVGDQVAGFPAHDLNQYPLYAEHALLPQQALVHYPDMLSASE 2353414
Query: 59 AAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEK 118
AA L +++ + PG V+++ AA TG Q+AK G RVI C +E
Sbjct: 2353413 AAIHYTPMLVSYFALVELAQLEPGQYVLINQAAHCTGPAAVQLAKALGGRVIATCDTSED 2353234
Query: 119 AMLATSVGRADVVI----DYVATPDWPPLVRAAAPKGVDAVYDGVG 160
+G V++ D V L + +GV+ V D G
Sbjct: 2353233 RDYLRELGAETVIVTEEEDLVGR-----LQKLTEGRGVEVVLDACG 2353111
Score = 36.6 bits (83), Expect = 3.1, Method: Composition-based stats.
Identities = 38/137 (27%), Positives = 60/137 (43%), Gaps = 6/137 (4%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFG---GVGCTGSYAAFTVVQASALLEVPDGVTDA 57
G + AG V V+E G V G G+ G + + V A+ +++ P G++
Sbjct: 2442742 GIDAAGVVAS--SSVAEFAEGDEVIVTGYDLGMNTAGGFGQYIRVPAAWIIKRPQGLSLR 2442569
Query: 58 QAAAVLCQGLTAHYLVDSSYPCG--PG-STVVVHAAAGGTGLLVCQMAKLRGARVIGICG 114
A + GLTA VD G PG + V+V A GG G + + G +V + G
Sbjct: 2442568 DAMILGTAGLTAALCVDKLEQAGLEPGDAPVLVTGATGGVGSIAVALLASLGYKVAAVTG 2442389
Query: 115 GAEKAMLATSVGRADVV 131
A++ T +G +V
Sbjct: 2442388 KADQVDFLTRLGATQIV 2442338
>gb|AE004091.2| Pseudomonas aeruginosa PAO1, complete genome
Length = 6264404
Score = 99.4 bits (246), Expect = 3e-19, Method: Composition-based stats.
Identities = 66/164 (40%), Positives = 87/164 (53%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G EGAG V VG V+ +G RVAY G G+Y+ V+ L+ +PDG+ QAA
Sbjct: 25362 GSEGAGEVEAVGSEVTRFKVGDRVAY--ATGPLGAYSELHVLAEEKLVHLPDGIDFEQAA 25189
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
AV+ +GLT YL+ +Y G T++ HAAAGG GL CQ AK G ++IG EKA
Sbjct: 25188 AVMLKGLTTQYLLRQTYELRGGETILFHAAAGGVGLFACQWAKALGVQLIGTVSSPEKAR 25009
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
LA G + IDY ++ K VYD VG+ T+
Sbjct: 25008 LARQHGAWE-TIDYSHENVARRVLELTDGKKCPVVYDSVGKDTW 24880
Score = 97.4 bits (241), Expect = 1e-18, Method: Composition-based stats.
Identities = 68/164 (41%), Positives = 96/164 (58%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G EGAG V +GPGVS G RVAY G G+YA+ + A LL++PD + AA
Sbjct: 3027258 GLEGAGVVAALGPGVSGLAPGDRVAY--ATGPLGAYASARLYPAERLLKLPDTLAFEDAA 3027431
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A+L +G+TAHYL+ ++YP GPG+ ++++ AAG G L+ A+ GA VIG+ AE
Sbjct: 3027432 ALLFKGITAHYLLYATYPVGPGTRILLYGAAGAVGQLMAAWARHLGAWVIGVVSKAESVE 3027611
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
A + G D V+ + A + A + VD VYD +G+ATF
Sbjct: 3027612 RARAAG-CDEVLVFDAASLAAQVAELTAGRKVDVVYDPIGRATF 3027740
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 54/164 (32%), Positives = 76/164 (46%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V VG V+ G RV G GS+A V ++ +P+G+ A AA
Sbjct: 5891866 GGEAAGVVAAVGEKVAHVRPGDRVMALTG---WGSFAEQVKVPGYNVMPIPEGMDFASAA 5892036
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A T+ + + PG T++V A+GG GL ++ K GARVI +K
Sbjct: 5892037 AFGMTYGTSMHALKQRANLQPGETLLVLGASGGVGLAAVEIGKAMGARVIAAASTPDKLA 5892216
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
+A + G AD +I+Y L +GVD +YD VG F
Sbjct: 5892217 VAKAAG-ADELINYSEGSLREQLKALTGGQGVDVIYDPVGGELF 5892345
Score = 59.7 bits (143), Expect = 3e-07, Method: Composition-based stats.
Identities = 40/102 (39%), Positives = 56/102 (54%), Gaps = 1/102 (0%)
Frame = -3
Query: 60 AAVLCQGLTAHY-LVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEK 118
+A+ G+TA++ L+D P G TVV+ AAG G + Q+A+L+G RV+GI GGAEK
Sbjct: 1795512 SALGMTGMTAYFALLDVGQPKN-GETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEK 1795336
Query: 119 AMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
D IDY D ++ PKG+D +D VG
Sbjct: 1795335 CRFLVEELGFDGAIDY-KNEDLAAGLKRECPKGIDVFFDNVG 1795213
Score = 58.5 bits (140), Expect = 7e-07, Method: Composition-based stats.
Identities = 41/100 (41%), Positives = 54/100 (54%), Gaps = 1/100 (1%)
Frame = +2
Query: 66 GLTAHY-LVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATS 124
G TA+ L+D P G T+VV AA G G V Q+ KL+G RV+G+ GGAEK A
Sbjct: 2416775 GFTAYMGLLDIGKP-QAGETLVVAAATGPVGATVGQIGKLKGCRVVGVAGGAEKCRHAVQ 2416951
Query: 125 VGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
V D +D+ A D+ + A P G+D Y+ VG F
Sbjct: 2416952 VLGFDACLDHHAA-DFAERLAEACPDGIDIYYENVGGKVF 2417068
Score = 52.4 bits (124), Expect = 6e-05, Method: Composition-based stats.
Identities = 52/161 (32%), Positives = 69/161 (42%), Gaps = 1/161 (0%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRV-AYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQA 59
G E AGTV VG VS +G+ V A G G YA F V L +PDG+ +A
Sbjct: 1229015 GLEIAGTVRAVGSEVSRFAVGEAVMALIPG----GGYAQFAVADERTTLHLPDGLGMEEA 1228848
Query: 60 AAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKA 119
AA+ +T + G T++VH A G G + K GA I +E
Sbjct: 1228847 AALPETFMTVWVNLFQRGGFKAGETLLVHGGASGIGTAATMLGKAFGAAKIFTTISSEAQ 1228668
Query: 120 MLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
A+ ADV IDY ++R +GVD + D V
Sbjct: 1228667 REASLRLGADVAIDYTEQDFVEEVLRGTEGRGVDVIVDIVA 1228545
Score = 40.8 bits (94), Expect = 0.15, Method: Composition-based stats.
Identities = 42/132 (31%), Positives = 58/132 (43%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V +VG G + + + A G G A VV A +L VP G++ A+AA
Sbjct: 3642663 GLECAGVVSEVGAGCTWQVGDRVCALLAG----GGMAEEVVVDARHVLPVPAGLSLAEAA 3642496
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+ TA + PG V++HA A G G Q+ K G G AE+
Sbjct: 3642495 GIPEVYATAWLNLFQLAALQPGEKVLLHAGASGVGSAGIQLCKAFGNPCWVSVGSAERLA 3642316
Query: 121 LATSVGRADVVI 132
S+G A V+
Sbjct: 3642315 YCESLGAAGGVL 3642280
Score = 36.6 bits (83), Expect = 2.8, Method: Composition-based stats.
Identities = 40/130 (30%), Positives = 50/130 (38%), Gaps = 24/130 (18%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAY------------------------FGGVGCTGSY 36
G E G V +GPGV +G RVA F G+ G +
Sbjct: 4579714 GHEFCGVVAALGPGVEGPRIGDRVAVEPEYRCGECRYCREGRYNLCESMGFIGLMGDGGF 4579893
Query: 37 AAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGL 96
A V A L +PD V QAA + + H L SS PG V G GL
Sbjct: 4579894 AERARVPAYMLHRLPDAVGFRQAAVLEPAAVALHALRRSSL--APGQRCAVF-GLGPIGL 4580064
Query: 97 LVCQMAKLRG 106
L+ +A+LRG
Sbjct: 4580065 LLVMLARLRG 4580094
Score = 35.8 bits (81), Expect = 4.7, Method: Composition-based stats.
Identities = 34/124 (27%), Positives = 50/124 (40%), Gaps = 17/124 (13%)
Frame = -2
Query: 29 GVGCTGSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVV- 87
G+ G Y+ VV A +L +P G+ AA +LC G+T+ Y + GPGS V V
Sbjct: 2505064 GLPTFGGYSERIVVSARFVLRIPQGLDPKAAAPLLCAGITS-YSPLRHWKVGPGSRVAVV 2504888
Query: 88 -------------HAAAGGTGLLVCQMAKLRGARVIG---ICGGAEKAMLATSVGRADVV 131
A L K AR +G + + +A GR D++
Sbjct: 2504887 GLGGLGHMGLKFARALGAEVALFTRSPGKEEEARRLGADQVILSTDPQRMAAVAGRFDLI 2504708
Query: 132 IDYV 135
+D V
Sbjct: 2504707 LDTV 2504696
>emb|X85015.1|PAHEMFGEN Pseudomonas aeruginosa qor, hemF and aroE genes
Length = 3101
Score = 99.4 bits (246), Expect = 3e-19, Method: Composition-based stats.
Identities = 66/164 (40%), Positives = 87/164 (53%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G EGAG V VG V+ +G RVAY G G+Y+ V+ L+ +PDG+ QAA
Sbjct: 848 GSEGAGEVEAVGSEVTRFKVGDRVAY--ATGPLGAYSELHVLAEEKLVHLPDGIDFEQAA 675
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
AV+ +GLT YL+ +Y G T++ HAAAGG GL CQ AK G ++IG EKA
Sbjct: 674 AVMLKGLTTQYLLRQTYELRGGETILFHAAAGGVGLFACQWAKALGVQLIGTVSSPEKAR 495
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
LA G + IDY ++ K VYD VG+ T+
Sbjct: 494 LARQHGAWE-TIDYSHENVARRVLELTDGKKCPVVYDSVGKDTW 366
>gb|CP000662.1| Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA01, complete sequence
Length = 877879
Score = 99.4 bits (246), Expect = 4e-19, Method: Composition-based stats.
Identities = 70/164 (42%), Positives = 94/164 (57%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V ++G GV+ G RVAY G+ VV A L+++PD + D AA
Sbjct: 760161 GGEAAGVVEELGEGVAGLAPGDRVAY---TMPNGACRTARVVPADRLVKLPDEIADEVAA 760331
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+++ +GLTAHYL+ SS+ G V+VHAAAGG G L+ Q K +GA IG GG KA
Sbjct: 760332 SIMLKGLTAHYLIHSSFRVEAGHHVLVHAAAGGVGQLLGQWLKEKGAVTIGTVGGPAKAE 760511
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
LA + G D VIDY A ++ +G D VYD VG++T+
Sbjct: 760512 LARANGY-DHVIDYEAVDFAEAVMDLTGGRGCDVVYDSVGRSTW 760640
>gb|CP001186.1| Bacillus cereus G9842, complete genome
Length = 5387334
Score = 99.4 bits (246), Expect = 4e-19, Method: Composition-based stats.
Identities = 66/161 (40%), Positives = 87/161 (54%), Gaps = 1/161 (0%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G EGAG V KVG V+ LG R+A+ + A V + ++ +PD ++ AA
Sbjct: 3357506 GYEGAGIVEKVGADVTTINLGDRIAF---ADVPFANAELVAVPSEKVIPLPDSISFETAA 3357676
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+VL QGLTAHYL SY +VHAAAGG G L+ QM KL G +VIG+ EKA
Sbjct: 3357677 SVLLQGLTAHYLTQDSYQLKQSDIALVHAAAGGVGQLLVQMIKLYGGKVIGLTSSKEKAK 3357856
Query: 121 LATSVGRADVVIDYVATPDW-PPLVRAAAPKGVDAVYDGVG 160
+AT G AD V Y +W ++ GV+ VY+ VG
Sbjct: 3357857 IATLAG-ADHVFLY--NEEWHTKVLEMTNGTGVNVVYESVG 3357970
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 47/164 (28%), Positives = 79/164 (48%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G + AG + KVG V+ +G + G++A + + + P ++ +AA
Sbjct: 3384255 GNDFAGVITKVGSKVTRFKVGDAIYARPRKNMIGTFAEYIAIHEDDIALKPKNLSFEEAA 3384434
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
++ GLT++ + G +++HA +GG G Q+AK+ GA V A A
Sbjct: 3384435 SIPLVGLTSYQALHDIMQLQKGQKILIHAGSGGVGTFAIQLAKIMGATVTTTASEA-GAN 3384611
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
L TS+G AD +I+Y T + ++ K DAV+D +G AT
Sbjct: 3384612 LVTSLG-ADEIINY-KTEKFEDIL-----KNYDAVFDTIGGATL 3384722
Score = 60.8 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 53/160 (33%), Positives = 74/160 (46%), Gaps = 1/160 (0%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G + AG V +VG V G+RV F GSYA + V + +PD V AA
Sbjct: 1997261 GIDAAGIVERVGSQVKNIHPGQRVIAFPQ---NGSYAEYVVANENLTFVLPDEVDFQTAA 1997091
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGA-RVIGICGGAEKA 119
A T++ L+ + G +V++HAAAGG G Q+AK GA VIG G K
Sbjct: 1997090 ACPIVSFTSYNLLANVARLQQGESVLIHAAAGGIGTTAIQLAKRLGAGTVIGTVGSEVKR 1996911
Query: 120 MLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGV 159
+A + G AD VI + + +GVD + D +
Sbjct: 1996910 KIALNAG-ADYVICHQDEDFVKKVNELTNGEGVDVILDSI 1996794
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 41/160 (25%), Positives = 69/160 (43%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G EG G V VG GV+ ++GKRV G G++ + A ++ +PD + D AA
Sbjct: 997643 GYEGVGIVEDVGAGVTRDLIGKRVLPLRG---EGTWQEYVKTSADFVVPIPDSIDDFTAA 997473
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+ LTA + ++V+A G L Q++++ + I + +
Sbjct: 997472 QMYINPLTAWVTCTETLNLQRNDVLLVNACGSAIGHLFAQLSQILNFQFIAVTRNNKHTE 997293
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
+G A VID P + ++ +G DA D +G
Sbjct: 997292 ELLRLGAA-YVIDTSTAPLYETVMTLTNGRGADAAIDSIG 997176
Score = 51.6 bits (122), Expect = 9e-05, Method: Composition-based stats.
Identities = 45/137 (32%), Positives = 67/137 (48%), Gaps = 2/137 (1%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEV-PDGVTDAQA 59
G E +G + +G V++ G V + G YA +T V S L+ + P VT +A
Sbjct: 167736 GVELSGEIEDIGTDVTQFKKGDPVFALTELN-LGGYAEYTCVHESGLIALKPTNVTYEEA 167560
Query: 60 AAVLCQGLTA-HYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEK 118
A + G +A H+L G V+++ A+G G Q+AK GA V IC +
Sbjct: 167559 AVIPFGGTSALHFLRKGQIK--KGQRVLIYGASGSVGTAAVQLAKYFGATVTAICSSSNF 167386
Query: 119 AMLATSVGRADVVIDYV 135
L T++G AD VIDY+
Sbjct: 167385 D-LVTALG-ADNVIDYM 167341
Score = 49.3 bits (116), Expect = 4e-04, Method: Composition-based stats.
Identities = 52/190 (27%), Positives = 81/190 (42%), Gaps = 26/190 (13%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYF-------------------------GGVGCTGS 35
G EG G V K+ V+ +G RV+ G G
Sbjct: 2110142 GHEGVGIVTKIADDVNSLKIGDRVSIAWMFQSCGRCEYCVTGRETFCREVKNAGYSVDGG 2110321
Query: 36 YAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTG 95
A +V A ++VP+G+ AQA+++ C G+T + + S PG +V++ GG G
Sbjct: 2110322 MAEQCIVTADYAVKVPEGLDPAQASSITCAGVTTYKAIKVS-DIKPGQPIVIY-GCGGLG 2110495
Query: 96 LLVCQMAK-LRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDA 154
L Q AK + GA+VI + +K LA VG AD+ I+ ++ +V+ A
Sbjct: 2110496 NLAIQYAKNVFGAKVIAVDINDDKLALAKEVG-ADMTINPISQGPADKIVQEELGGAYAA 2110672
Query: 155 VYDGVGQATF 164
V V + F
Sbjct: 2110673 VVTAVSKVAF 2110702
Score = 45.1 bits (105), Expect = 0.008, Method: Composition-based stats.
Identities = 45/181 (24%), Positives = 74/181 (40%), Gaps = 17/181 (9%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCT-----------------GSYAAFTVVQ 43
G +G+G V ++G GVS L V +G G++A + +V
Sbjct: 2555002 GSDGSGVVTEIGEGVSNIKLHTEVIINPSIGWEHATEVPELPEVLGGPKDGTFAEYVIVP 2555181
Query: 44 ASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAK 103
A ++E P +T ++ + LTA+ + + G V++ GG AK
Sbjct: 2555182 AENVVEKPSYLTWEESGVLSLSALTAYRALFTKGRLKCGEHVLIPGIGGGVATFAMLFAK 2555361
Query: 104 LRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQAT 163
GA+V K LA G AD I + + +W ++ + VD + D +G AT
Sbjct: 2555362 AIGAKVSVTSRVENKRELAEKYG-AD--ISFHSAGNWEESLQG---EKVDLIIDSIGPAT 2555523
Query: 164 F 164
F
Sbjct: 2555524 F 2555526
Score = 36.6 bits (83), Expect = 3.1, Method: Composition-based stats.
Identities = 45/164 (27%), Positives = 61/164 (37%), Gaps = 26/164 (15%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGC-------------------------TGS 35
G E +G V+++G GV+ +G RV C G
Sbjct: 665734 GHEFSGEVIEIGEGVTSHKVGDRVVVEPIYSCGKCEACKHGHYNVCEQLVFHGLGGEGGG 665913
Query: 36 YAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTG 95
++ +TVV + +PD +T Q A V + H + S G V G G
Sbjct: 665914 FSEYTVVPEDMVHHIPDEMTYEQGALVEPAAVAVHAVRQSKLKEGEAVAVF---GCGPIG 666084
Query: 96 LLVCQMAKLRGAR-VIGICGGAEKAMLATSVGRADVVIDYVATP 138
LLV Q AK GA VI + E+ LA G DYV P
Sbjct: 666085 LLVIQAAKAAGATPVIAVELSKERQELAKLAG-----ADYVLNP 666201
>dbj|AP010918.1| Mycobacterium bovis BCG str. Tokyo 172 DNA, complete genome
Length = 4371711
Score = 99.0 bits (245), Expect = 4e-19, Method: Composition-based stats.
Identities = 79/171 (46%), Positives = 91/171 (53%), Gaps = 7/171 (4%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSET----MLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTD 56
G E GTV VGPGV+ +G RV G+YA F AS +VPD VT
Sbjct: 1638396 GSEVCGTVEAVGPGVTAADTAISVGDRVV---SASANGAYAEFCTAPASLTAKVPDDVTS 1638226
Query: 57 AQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGA 116
AA+ L +GLTAHYL+ S YP G TV+VHA AGG GL++ Q A G RVI A
Sbjct: 1638225 EVAASALLKGLTAHYLLKSVYPVKRGDTVLVHAGAGGVGLILTQWATHLGVRVITTVSTA 1638046
Query: 117 EKAMLATSVGRADVVIDYVATPDWPPLVRA---AAPKGVDAVYDGVGQATF 164
EKA L+ G ADVV+DY W R GV AVYDGVG TF
Sbjct: 1638045 EKAKLSKDAG-ADVVLDY-PEDAWQFAGRVRELTGGTGVQAVYDGVGATTF 1637899
Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 57/165 (34%), Positives = 75/165 (45%), Gaps = 1/165 (0%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG VV+ P S+ G RV G TG A V+ + ++PD +T A
Sbjct: 3453969 GAEIAG-VVRSAPDNSQVRSGDRVV--GLTMLTGGMAEVAVLSPERVFKLPDNMTFEAGA 3454139
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGA-RVIGICGGAEKA 119
VL LT ++ + G TV+VH AAGG G ++A GA R + + EKA
Sbjct: 3454140 GVLFNDLTVYFALAVRGRLQAGETVLVHGAAGGIGTSTLRLAPALGASRTVAVVSTQEKA 3454319
Query: 120 MLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
LAT G DVV+ A + +GVD V D VG F
Sbjct: 3454320 ELATVAGATDVVL---AEGFKDAVQELTNGRGVDIVVDPVGGDRF 3454445
Score = 52.4 bits (124), Expect = 5e-05, Method: Composition-based stats.
Identities = 39/109 (35%), Positives = 54/109 (49%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G EGAG V++ GP V++ +G V +G G VV + VP G + AQAA
Sbjct: 3240460 GAEGAGVVLETGPEVTDLAVGDAV-----MGFLGGAGPLAVVDQQLVTRVPQGWSFAQAA 3240296
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARV 109
AV LTA Y + G +V++HA GG G+ Q+A+ G V
Sbjct: 3240295 AVPVVFLTAWYGLADLAEIKAGESVLIHAGTGGVGMAAVQLARQWGVEV 3240149
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 37/126 (29%), Positives = 59/126 (46%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E G V +G V +G+RV FG G++ A ++ +PD + D +AA
Sbjct: 3207055 GGECVGYVTAIGDEVDGVEVGQRVIAFG----PGTFGTHLGTIADLVVPIPDTLADNEAA 3207222
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
LTA + + PG V++H+A GG G+ +AK+ GAR+ G K
Sbjct: 3207223 TFGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKRE 3207402
Query: 121 LATSVG 126
+ + +G
Sbjct: 3207403 MLSRLG 3207420
Score = 43.9 bits (102), Expect = 0.018, Method: Composition-based stats.
Identities = 39/93 (41%), Positives = 50/93 (53%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G + AG V VGPGVSE +G RV GG+ G +A F A +P+G+TDAQAA
Sbjct: 1709203 GTDFAGVVSAVGPGVSELKVGDRV---GGMSPNGCWATFVTCDARLATRLPEGLTDAQAA 1709033
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGG 93
AV TA Y + G V++H+A GG
Sbjct: 1709032 AVTTASATAWYGLQDLARIKAGDKVLIHSATGG 1708934
Score = 43.5 bits (101), Expect = 0.021, Method: Composition-based stats.
Identities = 44/109 (40%), Positives = 60/109 (55%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G EGAG V +VGPGV+ +G V G +G GS A VV A ++++P+ AA
Sbjct: 1864079 GAEGAGVVTEVGPGVTGLAVGDPV--MGLLGVAGSEA---VVDARLVVKLPNRWPLTDAA 1864243
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARV 109
V LTA+ + PG +V+VHAAAGG G+ Q+A+L G V
Sbjct: 1864244 GVPVVFLTAYCALRVLAQVQPGESVLVHAAAGGVGMAAVQLARLWGLEV 1864390
Score = 42.0 bits (97), Expect = 0.062, Method: Composition-based stats.
Identities = 50/163 (30%), Positives = 71/163 (43%), Gaps = 1/163 (0%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRV-AYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQA 59
G E +G V VGPGV+E G+ V A G G YA + V A +L +P V +
Sbjct: 4192473 GLEVSGIVAAVGPGVTEWSAGQEVCALLAG----GGYAEYVAVPADQVLPIPPSVNLVDS 4192640
Query: 60 AAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKA 119
AA+ T + + PG V++H A G G Q+A+ ARV G EK
Sbjct: 4192641 AALPEVACTVWSNLVMTAHLRPGQLVLIHGGASGIGSHAIQVARALAARVAITAGSPEKL 4192820
Query: 120 MLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQA 162
L +G A + I+Y L + G D + D +G +
Sbjct: 4192821 ELCRDLG-AQITINYRDEDFVARLKQETDGSGADIILDIMGAS 4192946
Score = 41.2 bits (95), Expect = 0.12, Method: Composition-based stats.
Identities = 50/162 (30%), Positives = 74/162 (45%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G + AG V VGPGV++ +G V GG+ G + F A +P G+ DAQAA
Sbjct: 4264736 GTDFAGVVTAVGPGVTDHKVGDHV---GGMSPNGCWGTFVTCDARLAATLPPGLGDAQAA 4264566
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
AV TA Y + G TV++H+ GG G +A+ GA + G ++
Sbjct: 4264565 AVTTAHATAWYGLHELARIRAGDTVLIHSGTGGVGQAAIAIARAAGAEIFATAGTPQRRE 4264386
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQA 162
L ++G + V D + + R +GVD V + V A
Sbjct: 4264385 LLRNMG-IEHVYDSRSIEFAEQIRRDTNGRGVDVVLNSVTGA 4264263
Score = 41.2 bits (95), Expect = 0.12, Method: Composition-based stats.
Identities = 31/103 (30%), Positives = 52/103 (50%), Gaps = 1/103 (0%)
Frame = +3
Query: 27 FGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAH-YLVDSSYPCGPGSTV 85
+ G G YA FT V A+ +P G +D++ A +LC G+ + L+ + P PG +
Sbjct: 2092875 YTGWDADGGYAEFTTVPAAFAHHLPSGYSDSELAPLLCAGIIGYRSLLRTELP--PGGRL 2093048
Query: 86 VVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRA 128
++ GG+ + Q+A +GA + + GA LA +G A
Sbjct: 2093049 GLY-GFGGSAHITAQVALAQGAEIHVMTRGARARKLALQLGAA 2093174
Score = 39.3 bits (90), Expect = 0.40, Method: Composition-based stats.
Identities = 55/166 (33%), Positives = 79/166 (47%), Gaps = 2/166 (1%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG VV+ P + +G+RV+ FG G YA V + ++ P + DA A
Sbjct: 176113 GMETAG-VVRSAPSDAGFHVGERVSAFG---VLGGYAEQIAVPVANVVRSPVELDDAGAV 176280
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAK-LRGARVIGICGGAEKA 119
++L T ++ + PG TV+V AAGG G Q+AK ++ +VI +
Sbjct: 176281 SLLVNYNTMYFALARRAALRPGDTVLVLGAAGGVGTAAVQIAKAMQAGKVIAMVHREGAI 176460
Query: 120 MLATSVGRADVVIDYVATPDWPPLVR-AAAPKGVDAVYDGVGQATF 164
S+G ADVV+ T W VR +GVD V D +G TF
Sbjct: 176461 DYVASLG-ADVVLPL--TEGWAQQVRDHTYGQGVDIVVDPIGGPTF 176589
Score = 37.0 bits (84), Expect = 2.3, Method: Composition-based stats.
Identities = 28/80 (35%), Positives = 38/80 (47%)
Frame = +1
Query: 30 VGCTGSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHA 89
+G G + VV A + VP G + +AAAV LTA Y + G V+VHA
Sbjct: 1857817 MGLLGLVGSEAVVDARLVTMVPAGWSLVEAAAVPVAFLTAFYGLSVLAEVAAGQKVLVHA 1857996
Query: 90 AAGGTGLLVCQMAKLRGARV 109
GG G+ +A+ GA V
Sbjct: 1857997 GTGGVGMAAVSLARYWGAEV 1858056
Score = 37.0 bits (84), Expect = 2.4, Method: Composition-based stats.
Identities = 50/138 (36%), Positives = 62/138 (44%), Gaps = 4/138 (2%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRV---AYFGGVGCTGSYAAFTVVQASALLEVPDGVTDA 57
G E AGTV VG GV +G+RV FGG Y V A+ + +PD ++
Sbjct: 2141926 GYEVAGTVEAVGDGVDPNRVGERVLAGTRFGG------YCEIVNVAATDSVVLPDALSFE 2141765
Query: 58 QAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAE 117
Q AAV TA + G V++HAAAGG G+ Q AK A V G +
Sbjct: 2141764 QGAAVPVNYATAWAALHGYGSLRAGERVLIHAAAGGVGIAAVQFAKAAKAEVHGTASPQK 2141585
Query: 118 KAMLAT-SVGRADVVIDY 134
LA V RA IDY
Sbjct: 2141584 HQKLAEFGVDRA---IDY 2141540
Score = 35.4 bits (80), Expect = 5.9, Method: Composition-based stats.
Identities = 36/126 (28%), Positives = 55/126 (43%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G + AG V VGP V+E +G V GG+ G ++ F A + +P + A AA
Sbjct: 1320727 GIDFAGVVTAVGPDVTEHRIGDHV---GGMSANGCWSTFVRCDARLAVTLPPELPVAAAA 1320897
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
AV TA Y + V++H+ GG G +A+ G + G A++
Sbjct: 1320898 AVPTASATAWYALHDLARICSDDKVLIHSGTGGVGQAAIAIARAAGCEIFATAGSAQRRQ 1321077
Query: 121 LATSVG 126
L +G
Sbjct: 1321078 LLHDMG 1321095
>gb|CP000717.1| Mycobacterium tuberculosis F11, complete genome
Length = 4424435
Score = 99.0 bits (245), Expect = 4e-19, Method: Composition-based stats.
Identities = 79/171 (46%), Positives = 91/171 (53%), Gaps = 7/171 (4%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSET----MLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTD 56
G E GTV VGPGV+ +G RV G+YA F AS +VPD VT
Sbjct: 1645067 GSEVCGTVEAVGPGVTAADTAISVGDRVV---SASANGAYAEFCTAPASLTAKVPDDVTS 1644897
Query: 57 AQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGA 116
AA+ L +GLTAHYL+ S YP G TV+VHA AGG GL++ Q A G RVI A
Sbjct: 1644896 EVAASALLKGLTAHYLLKSVYPVKRGDTVLVHAGAGGVGLILTQWATHLGVRVITTVSTA 1644717
Query: 117 EKAMLATSVGRADVVIDYVATPDWPPLVRA---AAPKGVDAVYDGVGQATF 164
EKA L+ G ADVV+DY W R GV AVYDGVG TF
Sbjct: 1644716 EKAKLSKDAG-ADVVLDY-PEDAWQFAGRVRELTGGTGVQAVYDGVGATTF 1644570
Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 57/165 (34%), Positives = 75/165 (45%), Gaps = 1/165 (0%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG VV+ P S+ G RV G TG A V+ + ++PD +T A
Sbjct: 3521395 GAEIAG-VVRSAPDNSQVRSGDRVV--GLTMLTGGMAEVAVLSPERVFKLPDNMTFEAGA 3521565
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGA-RVIGICGGAEKA 119
VL LT ++ + G TV+VH AAGG G ++A GA R + + EKA
Sbjct: 3521566 GVLFNDLTVYFALAVRGRLQAGETVLVHGAAGGIGTSTLRLAPALGASRTVAVVSTQEKA 3521745
Query: 120 MLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
LAT G DVV+ A + +GVD V D VG F
Sbjct: 3521746 ELATVAGATDVVL---AEGFKDAVQELTNGRGVDIVVDPVGGDRF 3521871
Score = 52.4 bits (124), Expect = 5e-05, Method: Composition-based stats.
Identities = 39/109 (35%), Positives = 54/109 (49%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G EGAG V++ GP V++ +G V +G G VV + VP G + AQAA
Sbjct: 3304946 GAEGAGVVLETGPEVTDLAVGDAV-----MGFLGGAGPLAVVDQQLVTRVPQGWSFAQAA 3304782
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARV 109
AV LTA Y + G +V++HA GG G+ Q+A+ G V
Sbjct: 3304781 AVPVVFLTAWYGLADLAEIKAGESVLIHAGTGGVGMAAVQLARQWGVEV 3304635
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 37/126 (29%), Positives = 59/126 (46%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E G V +G V +G+RV FG G++ A ++ +PD + D +AA
Sbjct: 3271712 GGECVGYVTAIGDEVDGVEVGQRVIAFG----PGTFGTHLGTIADLVVPIPDTLADNEAA 3271879
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
LTA + + PG V++H+A GG G+ +AK+ GAR+ G K
Sbjct: 3271880 TFGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKRE 3272059
Query: 121 LATSVG 126
+ + +G
Sbjct: 3272060 MLSRLG 3272077
Score = 48.5 bits (114), Expect = 7e-04, Method: Composition-based stats.
Identities = 49/163 (30%), Positives = 70/163 (42%), Gaps = 1/163 (0%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRV-AYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQA 59
G E +G V VGPGV+E G+ V A G G YA + V A +L +P V +
Sbjct: 4235878 GLEVSGIVAAVGPGVTEWSAGQEVCALLAG----GGYAEYVAVPADQVLPIPPSVNLVDS 4236045
Query: 60 AAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKA 119
AA+ T + + PG V++H A G G Q+ + ARV G EK
Sbjct: 4236046 AALPEVACTVWSNLVMTAHLRPGQLVLIHGGASGIGSHAIQVVRALAARVAITAGSPEKL 4236225
Query: 120 MLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQA 162
L +G A + I+Y L + G D + D +G +
Sbjct: 4236226 ELCRDLG-AQITINYRDEDFVARLKQETDGSGADIILDIMGAS 4236351
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 45/109 (41%), Positives = 61/109 (55%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G EGAG V +VGPGV+ +G V G +G GS A VV A ++++P+ AA
Sbjct: 1881303 GAEGAGVVTEVGPGVTGLAVGDPV--MGLLGVAGSEA---VVDARLVVKLPNRWPLTDAA 1881467
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARV 109
V LTA+Y + PG +V+VHAAAGG G+ Q+A+L G V
Sbjct: 1881468 GVPVVFLTAYYALRVLAQVQPGESVLVHAAAGGVGMAAVQLARLWGLEV 1881614
Score = 43.9 bits (102), Expect = 0.017, Method: Composition-based stats.
Identities = 39/93 (41%), Positives = 50/93 (53%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G + AG V VGPGVSE +G RV GG+ G +A F A +P+G+TDAQAA
Sbjct: 1728606 GTDFAGVVSAVGPGVSELKVGDRV---GGMSPNGCWATFVTCDARLATRLPEGLTDAQAA 1728436
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGG 93
AV TA Y + G V++H+A GG
Sbjct: 1728435 AVTTASATAWYGLQDLARIKAGDKVLIHSATGG 1728337
Score = 41.2 bits (95), Expect = 0.12, Method: Composition-based stats.
Identities = 50/162 (30%), Positives = 74/162 (45%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G + AG V VGPGV++ +G V GG+ G + F A +P G+ DAQAA
Sbjct: 4308145 GTDFAGVVTAVGPGVTDHKVGDHV---GGMSPNGCWGTFVTCDARLAATLPPGLGDAQAA 4307975
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
AV TA Y + G TV++H+ GG G +A+ GA + G ++
Sbjct: 4307974 AVTTAHATAWYGLHELARIRAGDTVLIHSGTGGVGQAAIAIARAAGAEIFATAGTPQRRE 4307795
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQA 162
L ++G + V D + + R +GVD V + V A
Sbjct: 4307794 LLRNMG-IEHVYDSRSIEFAEQIRRDTNGRGVDVVLNSVTGA 4307672
Score = 41.2 bits (95), Expect = 0.12, Method: Composition-based stats.
Identities = 31/103 (30%), Positives = 52/103 (50%), Gaps = 1/103 (0%)
Frame = +2
Query: 27 FGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAH-YLVDSSYPCGPGSTV 85
+ G G YA FT V A+ +P G +D++ A +LC G+ + L+ + P PG +
Sbjct: 2118116 YTGWDADGGYAEFTTVPAAFAHHLPSGYSDSELAPLLCAGIIGYRSLLRTELP--PGGRL 2118289
Query: 86 VVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRA 128
++ GG+ + Q+A +GA + + GA LA +G A
Sbjct: 2118290 GLY-GFGGSAHITAQVALAQGAEIHVMTRGARARKLALQLGAA 2118415
Score = 39.3 bits (90), Expect = 0.40, Method: Composition-based stats.
Identities = 55/166 (33%), Positives = 79/166 (47%), Gaps = 2/166 (1%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG VV+ P + +G+RV+ FG G YA V + ++ P + DA A
Sbjct: 176199 GMETAG-VVRSAPSDAGFHVGERVSAFG---VLGGYAEQIAVPVANVVRSPVELDDAGAV 176366
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAK-LRGARVIGICGGAEKA 119
++L T ++ + PG TV+V AAGG G Q+AK ++ +VI +
Sbjct: 176367 SLLVNYNTMYFALARRAALRPGDTVLVLGAAGGVGTAAVQIAKAMQAGKVIAMVHREGAI 176546
Query: 120 MLATSVGRADVVIDYVATPDWPPLVR-AAAPKGVDAVYDGVGQATF 164
S+G ADVV+ T W VR +GVD V D +G TF
Sbjct: 176547 DYVASLG-ADVVLPL--TEGWAQQVRDHTYGQGVDIVVDPIGGPTF 176675
Score = 37.0 bits (84), Expect = 2.3, Method: Composition-based stats.
Identities = 28/80 (35%), Positives = 38/80 (47%)
Frame = +2
Query: 30 VGCTGSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHA 89
+G G + VV A + VP G + +AAAV LTA Y + G V+VHA
Sbjct: 1875038 MGLLGLVGSEAVVDARLVTMVPAGWSLVEAAAVPVAFLTAFYGLSVLAEVAAGQKVLVHA 1875217
Query: 90 AAGGTGLLVCQMAKLRGARV 109
GG G+ +A+ GA V
Sbjct: 1875218 GTGGVGMAAVSLARYWGAEV 1875277
Score = 37.0 bits (84), Expect = 2.4, Method: Composition-based stats.
Identities = 50/138 (36%), Positives = 62/138 (44%), Gaps = 4/138 (2%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRV---AYFGGVGCTGSYAAFTVVQASALLEVPDGVTDA 57
G E AGTV VG GV +G+RV FGG Y V A+ + +PD ++
Sbjct: 2167166 GYEVAGTVEAVGDGVDPNRVGERVLAGTRFGG------YCEIVNVAATDSVVLPDALSFE 2167005
Query: 58 QAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAE 117
Q AAV TA + G V++HAAAGG G+ Q AK A V G +
Sbjct: 2167004 QGAAVPVNYATAWAALHGYGSLRAGERVLIHAAAGGVGIAAVQFAKAAKAEVHGTASPQK 2166825
Query: 118 KAMLAT-SVGRADVVIDY 134
LA V RA IDY
Sbjct: 2166824 HQKLAEFGVDRA---IDY 2166780
Score = 35.4 bits (80), Expect = 6.5, Method: Composition-based stats.
Identities = 36/126 (28%), Positives = 55/126 (43%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G + AG V VGP V+E +G V GG+ G ++ F A + +P + A AA
Sbjct: 1321870 GIDFAGVVTAVGPDVTEHRIGDHV---GGMSANGCWSTFVRCDARLAVTLPPELPVAAAA 1322040
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
AV TA Y + V++H+ GG G +A+ G + G A++
Sbjct: 1322041 AVPTASATAWYALHDLARICSDDKVLIHSGTGGVGQAAIAIARAAGCEIFATAGSAQRRQ 1322220
Query: 121 LATSVG 126
L +G
Sbjct: 1322221 LLHDMG 1322238
>gb|CP000611.1| Mycobacterium tuberculosis H37Ra, complete genome
Length = 4419977
Score = 99.0 bits (245), Expect = 4e-19, Method: Composition-based stats.
Identities = 79/171 (46%), Positives = 91/171 (53%), Gaps = 7/171 (4%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSET----MLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTD 56
G E GTV VGPGV+ +G RV G+YA F AS +VPD VT
Sbjct: 1642000 GSEVCGTVEAVGPGVTAADTAISVGDRVV---SASANGAYAEFCTAPASLTAKVPDDVTS 1641830
Query: 57 AQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGA 116
AA+ L +GLTAHYL+ S YP G TV+VHA AGG GL++ Q A G RVI A
Sbjct: 1641829 EVAASALLKGLTAHYLLKSVYPVKRGDTVLVHAGAGGVGLILTQWATHLGVRVITTVSTA 1641650
Query: 117 EKAMLATSVGRADVVIDYVATPDWPPLVRA---AAPKGVDAVYDGVGQATF 164
EKA L+ G ADVV+DY W R GV AVYDGVG TF
Sbjct: 1641649 EKAKLSKDAG-ADVVLDY-PEDAWQFAGRVRELTGGTGVQAVYDGVGATTF 1641503
Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 57/165 (34%), Positives = 75/165 (45%), Gaps = 1/165 (0%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG VV+ P S+ G RV G TG A V+ + ++PD +T A
Sbjct: 3520428 GAEIAG-VVRSAPDNSQVRSGDRVV--GLTMLTGGMAEVAVLSPERVFKLPDNMTFEAGA 3520598
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGA-RVIGICGGAEKA 119
VL LT ++ + G TV+VH AAGG G ++A GA R + + EKA
Sbjct: 3520599 GVLFNDLTVYFALAVRGRLQAGETVLVHGAAGGIGTSTLRLAPALGASRTVAVVSTQEKA 3520778
Query: 120 MLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
LAT G DVV+ A + +GVD V D VG F
Sbjct: 3520779 ELATVAGATDVVL---AEGFKDAVQELTNGRGVDIVVDPVGGDRF 3520904
Score = 52.4 bits (124), Expect = 5e-05, Method: Composition-based stats.
Identities = 39/109 (35%), Positives = 54/109 (49%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G EGAG V++ GP V++ +G V +G G VV + VP G + AQAA
Sbjct: 3305465 GAEGAGVVLETGPEVTDLAVGDAV-----MGFLGGAGPLAVVDQQLVTRVPQGWSFAQAA 3305301
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARV 109
AV LTA Y + G +V++HA GG G+ Q+A+ G V
Sbjct: 3305300 AVPVVFLTAWYGLADLAEIKAGESVLIHAGTGGVGMAAVQLARQWGVEV 3305154
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 37/126 (29%), Positives = 59/126 (46%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E G V +G V +G+RV FG G++ A ++ +PD + D +AA
Sbjct: 3272231 GGECVGYVTAIGDEVDGVEVGQRVIAFG----PGTFGTHLGTIADLVVPIPDTLADNEAA 3272398
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
LTA + + PG V++H+A GG G+ +AK+ GAR+ G K
Sbjct: 3272399 TFGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKRE 3272578
Query: 121 LATSVG 126
+ + +G
Sbjct: 3272579 MLSRLG 3272596
Score = 48.5 bits (114), Expect = 7e-04, Method: Composition-based stats.
Identities = 49/163 (30%), Positives = 70/163 (42%), Gaps = 1/163 (0%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRV-AYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQA 59
G E +G V VGPGV+E G+ V A G G YA + V A +L +P V +
Sbjct: 4231323 GLEVSGIVAAVGPGVTEWSAGQEVCALLAG----GGYAEYVAVPADQVLPIPPSVNLVDS 4231490
Query: 60 AAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKA 119
AA+ T + + PG V++H A G G Q+ + ARV G EK
Sbjct: 4231491 AALPEVACTVWSNLVMTAHLRPGQLVLIHGGASGIGSHAIQVVRALAARVAITAGSPEKL 4231670
Query: 120 MLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQA 162
L +G A + I+Y L + G D + D +G +
Sbjct: 4231671 ELCRDLG-AQITINYRDEDFVARLKQETDGSGADIILDIMGAS 4231796
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 45/109 (41%), Positives = 61/109 (55%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G EGAG V +VGPGV+ +G V G +G GS A VV A ++++P+ AA
Sbjct: 1887431 GAEGAGVVTEVGPGVTGLAVGDPV--MGLLGVAGSEA---VVDARLVVKLPNRWPLTDAA 1887595
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARV 109
V LTA+Y + PG +V+VHAAAGG G+ Q+A+L G V
Sbjct: 1887596 GVPVVFLTAYYALRVLAQVQPGESVLVHAAAGGVGMAAVQLARLWGLEV 1887742
Score = 43.9 bits (102), Expect = 0.017, Method: Composition-based stats.
Identities = 39/93 (41%), Positives = 50/93 (53%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G + AG V VGPGVSE +G RV GG+ G +A F A +P+G+TDAQAA
Sbjct: 1725486 GTDFAGVVSAVGPGVSELKVGDRV---GGMSPNGCWATFVTCDARLATRLPEGLTDAQAA 1725316
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGG 93
AV TA Y + G V++H+A GG
Sbjct: 1725315 AVTTASATAWYGLQDLARIKAGDKVLIHSATGG 1725217
Score = 41.2 bits (95), Expect = 0.12, Method: Composition-based stats.
Identities = 50/162 (30%), Positives = 74/162 (45%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G + AG V VGPGV++ +G V GG+ G + F A +P G+ DAQAA
Sbjct: 4303590 GTDFAGVVTAVGPGVTDHKVGDHV---GGMSPNGCWGTFVTCDARLAATLPPGLGDAQAA 4303420
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
AV TA Y + G TV++H+ GG G +A+ GA + G ++
Sbjct: 4303419 AVTTAHATAWYGLHELARIRAGDTVLIHSGTGGVGQAAIAIARAAGAEIFATAGTPQRRE 4303240
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQA 162
L ++G + V D + + R +GVD V + V A
Sbjct: 4303239 LLRNMG-IEHVYDSRSIEFAEQIRRDTNGRGVDVVLNSVTGA 4303117
Score = 40.0 bits (92), Expect = 0.25, Method: Composition-based stats.
Identities = 31/103 (30%), Positives = 52/103 (50%), Gaps = 1/103 (0%)
Frame = +3
Query: 27 FGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAH-YLVDSSYPCGPGSTV 85
+ G G YA FT V A+ +P G +D++ A +LC G+ + L+ + P PG +
Sbjct: 2119857 YTGWDADGGYAEFTTVPAAFAHHLPSGYSDSELAPLLCAGIIGYRSLLRTELP--PGGRL 2120030
Query: 86 VVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRA 128
++ GG+ + Q+A +GA + + GA LA +G A
Sbjct: 2120031 GLY-GFGGSAHITAQVALAQGAEIHVMTRGARARKLALQLGAA 2120156
Score = 39.3 bits (90), Expect = 0.40, Method: Composition-based stats.
Identities = 55/166 (33%), Positives = 79/166 (47%), Gaps = 2/166 (1%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG VV+ P + +G+RV+ FG G YA V + ++ P + DA A
Sbjct: 177242 GMETAG-VVRSAPSDAGFHVGERVSAFG---VLGGYAEQIAVPVANVVRSPVELDDAGAV 177409
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAK-LRGARVIGICGGAEKA 119
++L T ++ + PG TV+V AAGG G Q+AK ++ +VI +
Sbjct: 177410 SLLVNYNTMYFALARRAALRPGDTVLVLGAAGGVGTAAVQIAKAMQAGKVIAMVHREGAI 177589
Query: 120 MLATSVGRADVVIDYVATPDWPPLVR-AAAPKGVDAVYDGVGQATF 164
S+G ADVV+ T W VR +GVD V D +G TF
Sbjct: 177590 DYVASLG-ADVVLPL--TEGWAQQVRDHTYGQGVDIVVDPIGGPTF 177718
Score = 37.0 bits (84), Expect = 2.3, Method: Composition-based stats.
Identities = 28/80 (35%), Positives = 38/80 (47%)
Frame = +1
Query: 30 VGCTGSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHA 89
+G G + VV A + VP G + +AAAV LTA Y + G V+VHA
Sbjct: 1881166 MGLLGLVGSEAVVDARLVTMVPAGWSLVEAAAVPVAFLTAFYGLSVLAEVAAGQKVLVHA 1881345
Query: 90 AAGGTGLLVCQMAKLRGARV 109
GG G+ +A+ GA V
Sbjct: 1881346 GTGGVGMAAVSLARYWGAEV 1881405
Score = 37.0 bits (84), Expect = 2.4, Method: Composition-based stats.
Identities = 50/138 (36%), Positives = 62/138 (44%), Gaps = 4/138 (2%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRV---AYFGGVGCTGSYAAFTVVQASALLEVPDGVTDA 57
G E AGTV VG GV +G+RV FGG Y V A+ + +PD ++
Sbjct: 2168837 GYEVAGTVEAVGDGVDPNRVGERVLAGTRFGG------YCEIVNVAATDSVVLPDALSFE 2168676
Query: 58 QAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAE 117
Q AAV TA + G V++HAAAGG G+ Q AK A V G +
Sbjct: 2168675 QGAAVPVNYATAWAALHGYGSLRAGERVLIHAAAGGVGIAAVQFAKAAKAEVHGTASPQK 2168496
Query: 118 KAMLAT-SVGRADVVIDY 134
LA V RA IDY
Sbjct: 2168495 HQKLAEFGVDRA---IDY 2168451
Score = 35.4 bits (80), Expect = 6.5, Method: Composition-based stats.
Identities = 36/126 (28%), Positives = 55/126 (43%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G + AG V VGP V+E +G V GG+ G ++ F A + +P + A AA
Sbjct: 1319416 GIDFAGVVTAVGPDVTEHRIGDHV---GGMSANGCWSTFVRCDARLAVTLPPELPVAAAA 1319586
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
AV TA Y + V++H+ GG G +A+ G + G A++
Sbjct: 1319587 AVPTASATAWYALHDLARICSDDKVLIHSGTGGVGQAAIAIARAAGCEIFATAGSAQRRQ 1319766
Query: 121 LATSVG 126
L +G
Sbjct: 1319767 LLHDMG 1319784
>emb|AM408590.1| Mycobacterium bovis BCG Pasteur 1173P2, complete genome
Length = 4374522
Score = 99.0 bits (245), Expect = 4e-19, Method: Composition-based stats.
Identities = 79/171 (46%), Positives = 91/171 (53%), Gaps = 7/171 (4%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSET----MLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTD 56
G E GTV VGPGV+ +G RV G+YA F AS +VPD VT
Sbjct: 1665502 GSEVCGTVEAVGPGVTAADTAISVGDRVV---SASANGAYAEFCTAPASLTAKVPDDVTS 1665332
Query: 57 AQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGA 116
AA+ L +GLTAHYL+ S YP G TV+VHA AGG GL++ Q A G RVI A
Sbjct: 1665331 EVAASALLKGLTAHYLLKSVYPVKRGDTVLVHAGAGGVGLILTQWATHLGVRVITTVSTA 1665152
Query: 117 EKAMLATSVGRADVVIDYVATPDWPPLVRA---AAPKGVDAVYDGVGQATF 164
EKA L+ G ADVV+DY W R GV AVYDGVG TF
Sbjct: 1665151 EKAKLSKDAG-ADVVLDY-PEDAWQFAGRVRELTGGTGVQAVYDGVGATTF 1665005
Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 57/165 (34%), Positives = 75/165 (45%), Gaps = 1/165 (0%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG VV+ P S+ G RV G TG A V+ + ++PD +T A
Sbjct: 3461319 GAEIAG-VVRSAPDNSQVRSGDRVV--GLTMLTGGMAEVAVLSPERVFKLPDNMTFEAGA 3461489
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGA-RVIGICGGAEKA 119
VL LT ++ + G TV+VH AAGG G ++A GA R + + EKA
Sbjct: 3461490 GVLFNDLTVYFALAVRGRLQAGETVLVHGAAGGIGTSTLRLAPALGASRTVAVVSTQEKA 3461669
Query: 120 MLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
LAT G DVV+ A + +GVD V D VG F
Sbjct: 3461670 ELATVAGATDVVL---AEGFKDAVQELTNGRGVDIVVDPVGGDRF 3461795
Score = 52.4 bits (124), Expect = 5e-05, Method: Composition-based stats.
Identities = 39/109 (35%), Positives = 54/109 (49%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G EGAG V++ GP V++ +G V +G G VV + VP G + AQAA
Sbjct: 3247633 GAEGAGVVLETGPEVTDLAVGDAV-----MGFLGGAGPLAVVDQQLVTRVPQGWSFAQAA 3247469
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARV 109
AV LTA Y + G +V++HA GG G+ Q+A+ G V
Sbjct: 3247468 AVPVVFLTAWYGLADLAEIKAGESVLIHAGTGGVGMAAVQLARQWGVEV 3247322
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 37/126 (29%), Positives = 59/126 (46%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E G V +G V +G+RV FG G++ A ++ +PD + D +AA
Sbjct: 3214228 GGECVGYVTAIGDEVDGVEVGQRVIAFG----PGTFGTHLGTIADLVVPIPDTLADNEAA 3214395
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
LTA + + PG V++H+A GG G+ +AK+ GAR+ G K
Sbjct: 3214396 TFGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKRE 3214575
Query: 121 LATSVG 126
+ + +G
Sbjct: 3214576 MLSRLG 3214593
Score = 43.9 bits (102), Expect = 0.018, Method: Composition-based stats.
Identities = 39/93 (41%), Positives = 50/93 (53%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G + AG V VGPGVSE +G RV GG+ G +A F A +P+G+TDAQAA
Sbjct: 1736310 GTDFAGVVSAVGPGVSELKVGDRV---GGMSPNGCWATFVTCDARLATRLPEGLTDAQAA 1736140
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGG 93
AV TA Y + G V++H+A GG
Sbjct: 1736139 AVTTASATAWYGLQDLARIKAGDKVLIHSATGG 1736041
Score = 43.5 bits (101), Expect = 0.021, Method: Composition-based stats.
Identities = 44/109 (40%), Positives = 60/109 (55%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G EGAG V +VGPGV+ +G V G +G GS A VV A ++++P+ AA
Sbjct: 1891177 GAEGAGVVTEVGPGVTGLAVGDPV--MGLLGVAGSEA---VVDARLVVKLPNRWPLTDAA 1891341
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARV 109
V LTA+ + PG +V+VHAAAGG G+ Q+A+L G V
Sbjct: 1891342 GVPVVFLTAYCALRVLAQVQPGESVLVHAAAGGVGMAAVQLARLWGLEV 1891488
Score = 42.0 bits (97), Expect = 0.062, Method: Composition-based stats.
Identities = 50/163 (30%), Positives = 71/163 (43%), Gaps = 1/163 (0%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRV-AYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQA 59
G E +G V VGPGV+E G+ V A G G YA + V A +L +P V +
Sbjct: 4195280 GLEVSGIVAAVGPGVTEWSAGQEVCALLAG----GGYAEYVAVPADQVLPIPPSVNLVDS 4195447
Query: 60 AAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKA 119
AA+ T + + PG V++H A G G Q+A+ ARV G EK
Sbjct: 4195448 AALPEVACTVWSNLVMTAHLRPGQLVLIHGGASGIGSHAIQVARALAARVAITAGSPEKL 4195627
Query: 120 MLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQA 162
L +G A + I+Y L + G D + D +G +
Sbjct: 4195628 ELCRDLG-AQITINYRDEDFVARLKQETDGSGADIILDIMGAS 4195753
Score = 41.2 bits (95), Expect = 0.12, Method: Composition-based stats.
Identities = 50/162 (30%), Positives = 74/162 (45%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G + AG V VGPGV++ +G V GG+ G + F A +P G+ DAQAA
Sbjct: 4267546 GTDFAGVVTAVGPGVTDHKVGDHV---GGMSPNGCWGTFVTCDARLAATLPPGLGDAQAA 4267376
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
AV TA Y + G TV++H+ GG G +A+ GA + G ++
Sbjct: 4267375 AVTTAHATAWYGLHELARIRAGDTVLIHSGTGGVGQAAIAIARAAGAEIFATAGTPQRRE 4267196
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQA 162
L ++G + V D + + R +GVD V + V A
Sbjct: 4267195 LLRNMG-IEHVYDSRSIEFAEQIRRDTNGRGVDVVLNSVTGA 4267073
Score = 41.2 bits (95), Expect = 0.12, Method: Composition-based stats.
Identities = 31/103 (30%), Positives = 52/103 (50%), Gaps = 1/103 (0%)
Frame = +3
Query: 27 FGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAH-YLVDSSYPCGPGSTV 85
+ G G YA FT V A+ +P G +D++ A +LC G+ + L+ + P PG +
Sbjct: 2110884 YTGWDADGGYAEFTTVPAAFAHHLPSGYSDSELAPLLCAGIIGYRSLLRTELP--PGGRL 2111057
Query: 86 VVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRA 128
++ GG+ + Q+A +GA + + GA LA +G A
Sbjct: 2111058 GLY-GFGGSAHITAQVALAQGAEIHVMTRGARARKLALQLGAA 2111183
Score = 39.3 bits (90), Expect = 0.40, Method: Composition-based stats.
Identities = 55/166 (33%), Positives = 79/166 (47%), Gaps = 2/166 (1%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG VV+ P + +G+RV+ FG G YA V + ++ P + DA A
Sbjct: 205780 GMETAG-VVRSAPSDAGFHVGERVSAFG---VLGGYAEQIAVPVANVVRSPVELDDAGAV 205947
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAK-LRGARVIGICGGAEKA 119
++L T ++ + PG TV+V AAGG G Q+AK ++ +VI +
Sbjct: 205948 SLLVNYNTMYFALARRAALRPGDTVLVLGAAGGVGTAAVQIAKAMQAGKVIAMVHREGAI 206127
Query: 120 MLATSVGRADVVIDYVATPDWPPLVR-AAAPKGVDAVYDGVGQATF 164
S+G ADVV+ T W VR +GVD V D +G TF
Sbjct: 206128 DYVASLG-ADVVLPL--TEGWAQQVRDHTYGQGVDIVVDPIGGPTF 206256
Score = 37.0 bits (84), Expect = 2.3, Method: Composition-based stats.
Identities = 28/80 (35%), Positives = 38/80 (47%)
Frame = +3
Query: 30 VGCTGSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHA 89
+G G + VV A + VP G + +AAAV LTA Y + G V+VHA
Sbjct: 1884915 MGLLGLVGSEAVVDARLVTMVPAGWSLVEAAAVPVAFLTAFYGLSVLAEVAAGQKVLVHA 1885094
Query: 90 AAGGTGLLVCQMAKLRGARV 109
GG G+ +A+ GA V
Sbjct: 1885095 GTGGVGMAAVSLARYWGAEV 1885154
Score = 37.0 bits (84), Expect = 2.4, Method: Composition-based stats.
Identities = 50/138 (36%), Positives = 62/138 (44%), Gaps = 4/138 (2%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRV---AYFGGVGCTGSYAAFTVVQASALLEVPDGVTDA 57
G E AGTV VG GV +G+RV FGG Y V A+ + +PD ++
Sbjct: 2159935 GYEVAGTVEAVGDGVDPNRVGERVLAGTRFGG------YCEIVNVAATDSVVLPDALSFE 2159774
Query: 58 QAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAE 117
Q AAV TA + G V++HAAAGG G+ Q AK A V G +
Sbjct: 2159773 QGAAVPVNYATAWAALHGYGSLRAGERVLIHAAAGGVGIAAVQFAKAAKAEVHGTASPQK 2159594
Query: 118 KAMLAT-SVGRADVVIDY 134
LA V RA IDY
Sbjct: 2159593 HQKLAEFGVDRA---IDY 2159549
Score = 35.4 bits (80), Expect = 5.9, Method: Composition-based stats.
Identities = 36/126 (28%), Positives = 55/126 (43%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G + AG V VGP V+E +G V GG+ G ++ F A + +P + A AA
Sbjct: 1349389 GIDFAGVVTAVGPDVTEHRIGDHV---GGMSANGCWSTFVRCDARLAVTLPPELPVAAAA 1349559
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
AV TA Y + V++H+ GG G +A+ G + G A++
Sbjct: 1349560 AVPTASATAWYALHDLARICSDDKVLIHSGTGGVGQAAIAIARAAGCEIFATAGSAQRRQ 1349739
Query: 121 LATSVG 126
L +G
Sbjct: 1349740 LLHDMG 1349757
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome
Length = 4403837
Score = 99.0 bits (245), Expect = 4e-19, Method: Composition-based stats.
Identities = 79/171 (46%), Positives = 91/171 (53%), Gaps = 7/171 (4%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSET----MLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTD 56
G E GTV VGPGV+ +G RV G+YA F AS +VPD VT
Sbjct: 1640586 GSEVCGTVEAVGPGVTAADTAISVGDRVV---SASANGAYAEFCTAPASLTAKVPDDVTS 1640416
Query: 57 AQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGA 116
AA+ L +GLTAHYL+ S YP G TV+VHA AGG GL++ Q A G RVI A
Sbjct: 1640415 EVAASALLKGLTAHYLLKSVYPVKRGDTVLVHAGAGGVGLILTQWATHLGVRVITTVSTA 1640236
Query: 117 EKAMLATSVGRADVVIDYVATPDWPPLVRA---AAPKGVDAVYDGVGQATF 164
EKA L+ G ADVV+DY W R GV AVYDGVG TF
Sbjct: 1640235 EKAKLSKDAG-ADVVLDY-PEDAWQFAGRVRELTGGTGVQAVYDGVGATTF 1640089
Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 57/165 (34%), Positives = 75/165 (45%), Gaps = 1/165 (0%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG VV+ P S+ G RV G TG A V+ + ++PD +T A
Sbjct: 3503757 GAEIAG-VVRSAPDNSQVRSGDRVV--GLTMLTGGMAEVAVLSPERVFKLPDNMTFEAGA 3503927
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGA-RVIGICGGAEKA 119
VL LT ++ + G TV+VH AAGG G ++A GA R + + EKA
Sbjct: 3503928 GVLFNDLTVYFALAVRGRLQAGETVLVHGAAGGIGTSTLRLAPALGASRTVAVVSTQEKA 3504107
Query: 120 MLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
LAT G DVV+ A + +GVD V D VG F
Sbjct: 3504108 ELATVAGATDVVL---AEGFKDAVQELTNGRGVDIVVDPVGGDRF 3504233
Score = 52.4 bits (124), Expect = 5e-05, Method: Composition-based stats.
Identities = 39/109 (35%), Positives = 54/109 (49%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G EGAG V++ GP V++ +G V +G G VV + VP G + AQAA
Sbjct: 3287794 GAEGAGVVLETGPEVTDLAVGDAV-----MGFLGGAGPLAVVDQQLVTRVPQGWSFAQAA 3287630
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARV 109
AV LTA Y + G +V++HA GG G+ Q+A+ G V
Sbjct: 3287629 AVPVVFLTAWYGLADLAEIKAGESVLIHAGTGGVGMAAVQLARQWGVEV 3287483
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 37/126 (29%), Positives = 59/126 (46%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E G V +G V +G+RV FG G++ A ++ +PD + D +AA
Sbjct: 3254560 GGECVGYVTAIGDEVDGVEVGQRVIAFG----PGTFGTHLGTIADLVVPIPDTLADNEAA 3254727
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
LTA + + PG V++H+A GG G+ +AK+ GAR+ G K
Sbjct: 3254728 TFGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKRE 3254907
Query: 121 LATSVG 126
+ + +G
Sbjct: 3254908 MLSRLG 3254925
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 45/109 (41%), Positives = 61/109 (55%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G EGAG V +VGPGV+ +G V G +G GS A VV A ++++P+ AA
Sbjct: 1876819 GAEGAGVVTEVGPGVTGLAVGDPV--MGLLGVAGSEA---VVDARLVVKLPNRWPLTDAA 1876983
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARV 109
V LTA+Y + PG +V+VHAAAGG G+ Q+A+L G V
Sbjct: 1876984 GVPVVFLTAYYALRVLAQVQPGESVLVHAAAGGVGMAAVQLARLWGLEV 1877130
Score = 43.9 bits (102), Expect = 0.019, Method: Composition-based stats.
Identities = 39/93 (41%), Positives = 50/93 (53%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G + AG V VGPGVSE +G RV GG+ G +A F A +P+G+TDAQAA
Sbjct: 1724124 GTDFAGVVSAVGPGVSELKVGDRV---GGMSPNGCWATFVTCDARLATRLPEGLTDAQAA 1723954
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGG 93
AV TA Y + G V++H+A GG
Sbjct: 1723953 AVTTASATAWYGLQDLARIKAGDKVLIHSATGG 1723855
Score = 42.0 bits (97), Expect = 0.062, Method: Composition-based stats.
Identities = 50/163 (30%), Positives = 71/163 (43%), Gaps = 1/163 (0%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRV-AYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQA 59
G E +G V VGPGV+E G+ V A G G YA + V A +L +P V +
Sbjct: 4215190 GLEVSGIVAAVGPGVTEWSAGQEVCALLAG----GGYAEYVAVPADQVLPIPPSVNLVDS 4215357
Query: 60 AAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKA 119
AA+ T + + PG V++H A G G Q+A+ ARV G EK
Sbjct: 4215358 AALPEVACTVWSNLVMTAHLRPGQLVLIHGGASGIGSHAIQVARALAARVAITAGSPEKL 4215537
Query: 120 MLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQA 162
L +G A + I+Y L + G D + D +G +
Sbjct: 4215538 ELCRDLG-AQITINYRDEDFVARLKQETDGSGADIILDIMGAS 4215663
Score = 41.2 bits (95), Expect = 0.12, Method: Composition-based stats.
Identities = 50/162 (30%), Positives = 74/162 (45%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G + AG V VGPGV++ +G V GG+ G + F A +P G+ DAQAA
Sbjct: 4287467 GTDFAGVVTAVGPGVTDHKVGDHV---GGMSPNGCWGTFVTCDARLAATLPPGLGDAQAA 4287297
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
AV TA Y + G TV++H+ GG G +A+ GA + G ++
Sbjct: 4287296 AVTTAHATAWYGLHELARIRAGDTVLIHSGTGGVGQAAIAIARAAGAEIFATAGTPQRRE 4287117
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQA 162
L ++G + V D + + R +GVD V + V A
Sbjct: 4287116 LLRNMG-IEHVYDSRSIEFAEQIRRDTNGRGVDVVLNSVTGA 4286994
Score = 41.2 bits (95), Expect = 0.12, Method: Composition-based stats.
Identities = 31/103 (30%), Positives = 52/103 (50%), Gaps = 1/103 (0%)
Frame = +3
Query: 27 FGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAH-YLVDSSYPCGPGSTV 85
+ G G YA FT V A+ +P G +D++ A +LC G+ + L+ + P PG +
Sbjct: 2107146 YTGWDADGGYAEFTTVPAAFAHHLPSGYSDSELAPLLCAGIIGYRSLLRTELP--PGGRL 2107319
Query: 86 VVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRA 128
++ GG+ + Q+A +GA + + GA LA +G A
Sbjct: 2107320 GLY-GFGGSAHITAQVALAQGAEIHVMTRGARARKLALQLGAA 2107445
Score = 39.3 bits (90), Expect = 0.40, Method: Composition-based stats.
Identities = 55/166 (33%), Positives = 79/166 (47%), Gaps = 2/166 (1%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG VV+ P + +G+RV+ FG G YA V + ++ P + DA A
Sbjct: 176054 GMETAG-VVRSAPSDAGFHVGERVSAFG---VLGGYAEQIAVPVANVVRSPVELDDAGAV 176221
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAK-LRGARVIGICGGAEKA 119
++L T ++ + PG TV+V AAGG G Q+AK ++ +VI +
Sbjct: 176222 SLLVNYNTMYFALARRAALRPGDTVLVLGAAGGVGTAAVQIAKAMQAGKVIAMVHREGAI 176401
Query: 120 MLATSVGRADVVIDYVATPDWPPLVR-AAAPKGVDAVYDGVGQATF 164
S+G ADVV+ T W VR +GVD V D +G TF
Sbjct: 176402 DYVASLG-ADVVLPL--TEGWAQQVRDHTYGQGVDIVVDPIGGPTF 176530
Score = 37.0 bits (84), Expect = 2.3, Method: Composition-based stats.
Identities = 28/80 (35%), Positives = 38/80 (47%)
Frame = +3
Query: 30 VGCTGSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHA 89
+G G + VV A + VP G + +AAAV LTA Y + G V+VHA
Sbjct: 1870554 MGLLGLVGSEAVVDARLVTMVPAGWSLVEAAAVPVAFLTAFYGLSVLAEVAAGQKVLVHA 1870733
Query: 90 AAGGTGLLVCQMAKLRGARV 109
GG G+ +A+ GA V
Sbjct: 1870734 GTGGVGMAAVSLARYWGAEV 1870793
Score = 37.0 bits (84), Expect = 2.4, Method: Composition-based stats.
Identities = 50/138 (36%), Positives = 62/138 (44%), Gaps = 4/138 (2%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRV---AYFGGVGCTGSYAAFTVVQASALLEVPDGVTDA 57
G E AGTV VG GV +G+RV FGG Y V A+ + +PD ++
Sbjct: 2156196 GYEVAGTVEAVGDGVDPNRVGERVLAGTRFGG------YCEIVNVAATDSVVLPDALSFE 2156035
Query: 58 QAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAE 117
Q AAV TA + G V++HAAAGG G+ Q AK A V G +
Sbjct: 2156034 QGAAVPVNYATAWAALHGYGSLRAGERVLIHAAAGGVGIAAVQFAKAAKAEVHGTASPQK 2155855
Query: 118 KAMLAT-SVGRADVVIDY 134
LA V RA IDY
Sbjct: 2155854 HQKLAEFGVDRA---IDY 2155810
Score = 35.4 bits (80), Expect = 6.5, Method: Composition-based stats.
Identities = 36/126 (28%), Positives = 55/126 (43%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G + AG V VGP V+E +G V GG+ G ++ F A + +P + A AA
Sbjct: 1317592 GIDFAGVVTAVGPDVTEHRIGDHV---GGMSANGCWSTFVRCDARLAVTLPPELPVAAAA 1317762
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
AV TA Y + V++H+ GG G +A+ G + G A++
Sbjct: 1317763 AVPTASATAWYALHDLARICSDDKVLIHSGTGGVGQAAIAIARAAGCEIFATAGSAQRRQ 1317942
Query: 121 LATSVG 126
L +G
Sbjct: 1317943 LLHDMG 1317960
>emb|BX842576.1| Mycobacterium tuberculosis H37Rv complete genome; segment 5/13
Length = 348264
Score = 99.0 bits (245), Expect = 4e-19, Method: Composition-based stats.
Identities = 79/171 (46%), Positives = 91/171 (53%), Gaps = 7/171 (4%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSET----MLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTD 56
G E GTV VGPGV+ +G RV G+YA F AS +VPD VT
Sbjct: 257440 GSEVCGTVEAVGPGVTAADTAISVGDRVV---SASANGAYAEFCTAPASLTAKVPDDVTS 257270
Query: 57 AQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGA 116
AA+ L +GLTAHYL+ S YP G TV+VHA AGG GL++ Q A G RVI A
Sbjct: 257269 EVAASALLKGLTAHYLLKSVYPVKRGDTVLVHAGAGGVGLILTQWATHLGVRVITTVSTA 257090
Query: 117 EKAMLATSVGRADVVIDYVATPDWPPLVRA---AAPKGVDAVYDGVGQATF 164
EKA L+ G ADVV+DY W R GV AVYDGVG TF
Sbjct: 257089 EKAKLSKDAG-ADVVLDY-PEDAWQFAGRVRELTGGTGVQAVYDGVGATTF 256943
Score = 43.9 bits (102), Expect = 0.017, Method: Composition-based stats.
Identities = 39/93 (41%), Positives = 50/93 (53%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G + AG V VGPGVSE +G RV GG+ G +A F A +P+G+TDAQAA
Sbjct: 340926 GTDFAGVVSAVGPGVSELKVGDRV---GGMSPNGCWATFVTCDARLATRLPEGLTDAQAA 340756
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGG 93
AV TA Y + G V++H+A GG
Sbjct: 340755 AVTTASATAWYGLQDLARIKAGDKVLIHSATGG 340657
>emb|BX248339.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment
6/14
Length = 300050
Score = 99.0 bits (245), Expect = 4e-19, Method: Composition-based stats.
Identities = 79/171 (46%), Positives = 91/171 (53%), Gaps = 7/171 (4%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSET----MLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTD 56
G E GTV VGPGV+ +G RV G+YA F AS +VPD VT
Sbjct: 23229 GSEVCGTVEAVGPGVTAADTAISVGDRVV---SASANGAYAEFCTAPASLTAKVPDDVTS 23059
Query: 57 AQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGA 116
AA+ L +GLTAHYL+ S YP G TV+VHA AGG GL++ Q A G RVI A
Sbjct: 23058 EVAASALLKGLTAHYLLKSVYPVKRGDTVLVHAGAGGVGLILTQWATHLGVRVITTVSTA 22879
Query: 117 EKAMLATSVGRADVVIDYVATPDWPPLVRA---AAPKGVDAVYDGVGQATF 164
EKA L+ G ADVV+DY W R GV AVYDGVG TF
Sbjct: 22878 EKAKLSKDAG-ADVVLDY-PEDAWQFAGRVRELTGGTGVQAVYDGVGATTF 22732
Score = 43.9 bits (102), Expect = 0.018, Method: Composition-based stats.
Identities = 39/93 (41%), Positives = 50/93 (53%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G + AG V VGPGVSE +G RV GG+ G +A F A +P+G+TDAQAA
Sbjct: 93982 GTDFAGVVSAVGPGVSELKVGDRV---GGMSPNGCWATFVTCDARLATRLPEGLTDAQAA 93812
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGG 93
AV TA Y + G V++H+A GG
Sbjct: 93811 AVTTASATAWYGLQDLARIKAGDKVLIHSATGG 93713
Score = 43.5 bits (101), Expect = 0.021, Method: Composition-based stats.
Identities = 44/109 (40%), Positives = 60/109 (55%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G EGAG V +VGPGV+ +G V G +G GS A VV A ++++P+ AA
Sbjct: 257299 GAEGAGVVTEVGPGVTGLAVGDPV--MGLLGVAGSEA---VVDARLVVKLPNRWPLTDAA 257463
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARV 109
V LTA+ + PG +V+VHAAAGG G+ Q+A+L G V
Sbjct: 257464 GVPVVFLTAYCALRVLAQVQPGESVLVHAAAGGVGMAAVQLARLWGLEV 257610
Score = 37.0 bits (84), Expect = 2.3, Method: Composition-based stats.
Identities = 28/80 (35%), Positives = 38/80 (47%)
Frame = +3
Query: 30 VGCTGSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHA 89
+G G + VV A + VP G + +AAAV LTA Y + G V+VHA
Sbjct: 251034 MGLLGLVGSEAVVDARLVTMVPAGWSLVEAAAVPVAFLTAFYGLSVLAEVAAGQKVLVHA 251213
Query: 90 AAGGTGLLVCQMAKLRGARV 109
GG G+ +A+ GA V
Sbjct: 251214 GTGGVGMAAVSLARYWGAEV 251273
>gb|CP000144.1| Rhodobacter sphaeroides 2.4.1 chromosome 2, complete sequence
Length = 943016
Score = 99.0 bits (245), Expect = 4e-19, Method: Composition-based stats.
Identities = 71/164 (43%), Positives = 93/164 (56%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V ++G GVS G RVAY G+ V+ A L+ +P+GVTD AA
Sbjct: 445615 GGEAAGVVEELGEGVSGFAPGDRVAY---TMPNGACRTARVLPADRLVRLPEGVTDEVAA 445445
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+++ +GLTA YL+ SS+ G V+VHAAAGG G L+ Q K +GA G GGA KA
Sbjct: 445444 SIMLKGLTAQYLIHSSFRVEAGHHVLVHAAAGGVGQLLGQWLKAKGAITYGTVGGAAKAE 445265
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
+A + G D VIDY AT + +G D VYD VG+ T+
Sbjct: 445264 MARASG-FDHVIDYEATDFAEAVRELTGGRGCDVVYDSVGRTTW 445136
Score = 60.8 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 35/80 (43%), Positives = 47/80 (58%)
Frame = +1
Query: 81 PGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDW 140
PG TVVV AA+G G V Q+AKL+G R +G+ GGA+K D ID+ A PD+
Sbjct: 621037 PGETVVVAAASGPVGATVGQIAKLKGCRAVGVAGGADKCRYVVETLGFDACIDHRA-PDF 621213
Query: 141 PPLVRAAAPKGVDAVYDGVG 160
+ AA P G+D ++ VG
Sbjct: 621214 EAQLAAACPNGIDIYFENVG 621273
>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000, complete genome
Length = 6397126
Score = 99.0 bits (245), Expect = 4e-19, Method: Composition-based stats.
Identities = 67/164 (40%), Positives = 92/164 (56%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G EGAG V VG V+ +G RVAY G G G+Y+ V+ + L+++ D V+ QAA
Sbjct: 194686 GAEGAGVVEAVGDEVTRFKVGDRVAY--GTGPLGAYSEVHVLPEANLVKLADSVSFEQAA 194859
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A++ +GLT YL+ +Y PG ++ HAAAGG G L CQ AK GA++IG EKA
Sbjct: 194860 ALMLKGLTVQYLLRQTYQVKPGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAA 195039
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
A ++G + IDY ++ K VYDGVGQ T+
Sbjct: 195040 HAKALGAWE-TIDYSHEDVAKRVLELTDGKKCPVVYDGVGQDTW 195168
Score = 67.4 bits (163), Expect = 1e-09, Method: Composition-based stats.
Identities = 54/164 (32%), Positives = 75/164 (45%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG + VG VS G RV G GS+A V +L +P+ + AA
Sbjct: 5951510 GGEAAGVIAAVGENVSHLKPGDRVMALTG---WGSFAEQVAVPHYNVLPIPESMDFTTAA 5951680
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A T+ + + PG T++V A+GG GL ++ K GARVI +EK
Sbjct: 5951681 AFSMTYGTSMHALKQRANLQPGETLLVLGASGGVGLAAVEIGKALGARVIAAASSSEKLE 5951860
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
+A + G AD +I+Y T + R G D +YD VG F
Sbjct: 5951861 VARNAG-ADELINYSETSLKDEVKRLTQGNGADVIYDPVGGDLF 5951989
Score = 58.5 bits (140), Expect = 8e-07, Method: Composition-based stats.
Identities = 40/102 (39%), Positives = 57/102 (55%), Gaps = 1/102 (0%)
Frame = -1
Query: 60 AAVLCQGLTAHY-LVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEK 118
+A+ G+TA+ L+D P G TV++ AAG G + Q+AKL+G RV+GI GG +K
Sbjct: 2216548 SALGMTGMTAYLALLDVGQP-KSGDTVLISGAAGAVGSIAGQIAKLKGCRVVGIAGGKDK 2216372
Query: 119 AMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
L TS D IDY + D ++ P GV+ +D VG
Sbjct: 2216371 CSLLTSELGFDAAIDY-KSEDVMDAIKRHCPDGVNVYFDNVG 2216249
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 55/183 (30%), Positives = 77/183 (42%), Gaps = 21/183 (11%)
Frame = +2
Query: 3 EGAGTVVKVGPGVSETMLGKRV--AYF----------------GGVGCTGSYAAFTVVQA 44
+GAG V V GVSE +G V +F G G G +A
Sbjct: 1467515 DGAGVVTAVDEGVSEFKVGDSVVSTFFPEWISGEPLVEGFVTVPGDGVDGYAREQVTARA 1467694
Query: 45 SALLEVPDGVTDAQAAAVLCQGLTA--HYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMA 102
++ P G + A+A+ + GLTA +VD S G TV+V GG + Q A
Sbjct: 1467695 TSFTRAPLGYSHAEASTLTTAGLTAWRALMVDDSLKA--GDTVLVQ-GTGGVSIFALQFA 1467865
Query: 103 KLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRA-AAPKGVDAVYDGVGQ 161
K+ GA VI EK ++G AD +I+Y +W R +GVD + D G
Sbjct: 1467866 KMVGATVIATSSSDEKLERLQAMG-ADHLINYRKDSNWGETARKLTGGRGVDHIIDVGGP 1468042
Query: 162 ATF 164
+T
Sbjct: 1468043 STL 1468051
Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats.
Identities = 46/162 (28%), Positives = 68/162 (41%), Gaps = 2/162 (1%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGS--YAAFTVVQASALLEVPDGVTDAQ 58
G E AG V +G GV + +G +VA F Y V+ AL PD +T +
Sbjct: 3420082 GYEMAGVVTALGDGVDDLQVGDKVASFPAADANQHPVYGECIVMPRLALTRYPDVLTPVE 3419903
Query: 59 AAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEK 118
A+ L A++ G TV+V A+ +G Q+ K G RVI +
Sbjct: 3419902 ASVHYTPYLVAYFAYVDLARIKAGQTVLVTDASHCSGPAFVQLGKALGVRVIAATKTEDA 3419723
Query: 119 AMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
+G AD V+ + + +GVDAV+DG+G
Sbjct: 3419722 REYLLLLG-ADKVVVTEEQDLLMAINKYTDNRGVDAVFDGLG 3419600
Score = 43.1 bits (100), Expect = 0.028, Method: Composition-based stats.
Identities = 39/126 (30%), Positives = 56/126 (44%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E +G + +VGPG S + + A G G+ A VV +L VP+G+T +AA
Sbjct: 4396190 GLECSGVIAEVGPGTSWLVGDRVCALLAG----GAMAEEVVVDGRHVLPVPEGLTLHEAA 4396023
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A+ TA + PG V++HA A G G Q+ K G V G E+
Sbjct: 4396022 AIPEVYATAWLNLFQLAGLKPGEKVLLHAGASGVGSAGIQLCKAFGNPVWVSVGSTERLA 4395843
Query: 121 LATSVG 126
+G
Sbjct: 4395842 YCVELG 4395825
Score = 43.1 bits (100), Expect = 0.032, Method: Composition-based stats.
Identities = 41/109 (37%), Positives = 53/109 (48%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V +VG GV++ G RV V G++ V ++P T AQAA
Sbjct: 5294008 GTEAAGIVTEVGTGVTDLRPGDRVL----VMSEGAFGPLLVADQRTARKLPADWTFAQAA 5294175
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARV 109
LTA+Y + PG V++HAAAGG G Q+AK GA V
Sbjct: 5294176 GFPVAFLTAYYSLVRLAQVRPGDKVLIHAAAGGVGQAAIQLAKHLGAEV 5294322
Score = 42.7 bits (99), Expect = 0.042, Method: Composition-based stats.
Identities = 28/114 (24%), Positives = 53/114 (46%), Gaps = 2/114 (1%)
Frame = +3
Query: 34 GSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYP--CGPGSTVVVHAAA 91
GS+A +T+V+ P ++ ++A ++ G TA+ + P PG V++ AA
Sbjct: 5303223 GSFAEYTLVEDYQCFPKPKFLSWEESATLMLNGPTAYKQLTHWAPNTVKPGDAVLIWGAA 5303402
Query: 92 GGTGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVR 145
GG G + Q+ + G + + ++ A +G + Y+ D+P L R
Sbjct: 5303403 GGLGSMSIQLTRALGGLPVAVVSSPDRGRYACELG----AVGYLLRTDYPHLGR 5303552
Score = 42.4 bits (98), Expect = 0.045, Method: Composition-based stats.
Identities = 42/135 (31%), Positives = 60/135 (44%), Gaps = 1/135 (0%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRV-AYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQA 59
G + AG V++VG V+ G + A +G GS A V P + QA
Sbjct: 2036267 GSDLAGVVLEVGSAVTRFKAGDAIFASLFDLG-RGSIAELVAVPERTAALKPTNLDFVQA 2036091
Query: 60 AAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKA 119
A++ GLT+ + PG V + A +GG G Q+AK G +V + A
Sbjct: 2036090 ASIPMVGLTSWQALKERANLQPGQKVFIPAGSGGIGTFAIQLAKHLGGKV-ATTTSSGNA 2035914
Query: 120 MLATSVGRADVVIDY 134
L S+G AD V+DY
Sbjct: 2035913 KLVGSLG-ADEVVDY 2035872
>dbj|AK063662.1| Oryza sativa Japonica Group cDNA clone:001-119-C04, full insert
sequence
Length = 1244
Score = 99.0 bits (245), Expect = 4e-19, Method: Composition-based stats.
Identities = 66/167 (39%), Positives = 89/167 (53%), Gaps = 3/167 (1%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGV-SETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQA 59
G EGAGT+ VGP V S+ +G RV Y G +YA + V A+ + +PD + A
Sbjct: 341 GREGAGTIAAVGPNVPSDLTVGTRVGYMGQY----AYAEYVPVAATYTIPLPDSIDSKTA 508
Query: 60 AAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKA 119
AA + Q LTA L+ +YP G ++V AAAGG GL +CQ+ + GARVI EK
Sbjct: 509 AASILQALTAITLIRDAYPVQKGDWILVTAAAGGVGLWLCQLLRAIGARVIASASTEEKR 688
Query: 120 MLATSVGRADVVIDYVATPDW--PPLVRAAAPKGVDAVYDGVGQATF 164
LA G V+ Y D ++ +GV AV+D VG+ATF
Sbjct: 689 NLAKENGAEFVLGYYEEDRDQFVKKVLEITGGEGVHAVFDSVGKATF 829
>ref|XM_001817662.1| Aspergillus oryzae RIB40 hypothetical protein partial mRNA
Length = 1005
Score = 99.0 bits (245), Expect = 4e-19, Method: Composition-based stats.
Identities = 68/167 (40%), Positives = 92/167 (55%), Gaps = 3/167 (1%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETM---LGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDA 57
G EGAGT+V+VG V+ + +G RVA F G++A + A ++ +P V+
Sbjct: 205 GREGAGTIVQVGAKVTSSYGLKVGDRVAVF----TQGAFAEYVAAPAEGVMRLPPSVSTK 372
Query: 58 QAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAE 117
AAV+ QGLTA +V S+ G ++V AAAGGTG L+ QM K GA VIG E
Sbjct: 373 VGAAVMLQGLTAWTMVQESHKVSSGQIILVQAAAGGTGGLLVQMCKYLGATVIGAVSSVE 552
Query: 118 KAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
KA +A G D +I Y T ++R KG AV+ GVGQ+TF
Sbjct: 553 KAKVAEENG-CDHIILYKTTNVEEQVMRLTGNKGCHAVFSGVGQSTF 690
>gb|CP001022.1| Exiguobacterium sibiricum 255-15, complete genome
Length = 3034136
Score = 99.0 bits (245), Expect = 4e-19, Method: Composition-based stats.
Identities = 60/161 (37%), Positives = 89/161 (55%), Gaps = 1/161 (0%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G EG+G + ++G V++ +G+RVA+ + A F ++ +PD V+ AA
Sbjct: 565869 GYEGSGIITQIGAAVTDLQVGQRVAF---ADVPNANAEFVAAPVDKVIPLPDFVSYETAA 565699
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+VL QGLTAHYL SY P V+VHAAAGG G L+ Q+ +L GA IG+ EKA
Sbjct: 565698 SVLLQGLTAHYLTRDSYTIRPKDLVLVHAAAGGVGQLLTQIVRLHGAIPIGLTSSMEKAD 565519
Query: 121 LATSVGRADVVIDYVATPDW-PPLVRAAAPKGVDAVYDGVG 160
+A G V ++ + +W ++ +GVD VY+ VG
Sbjct: 565518 IAKQAGAEHV---FLYSDNWVEQILTLTDQRGVDVVYESVG 565405
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 51/162 (31%), Positives = 86/162 (53%), Gaps = 1/162 (0%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G + G V + GP V+ +G+R+A + G++A + VV A AL ++PD V+ ++AA
Sbjct: 1894962 GVDLTGIVEQTGPNVTGIKVGERIAVHTNLQKNGAFAEYAVVDARALAKIPDAVSFSEAA 1895141
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A+LC G+TA+ + T+++HA AGG G + Q+AK R + E
Sbjct: 1895142 AILCAGMTAYEAIIQKMNTTGKETILIHAGAGGVGGIGIQLAK-RLGLAVATTASTENHD 1895318
Query: 121 LATSVGRADVVIDYVATPDWPPLVRA-AAPKGVDAVYDGVGQ 161
+G AD+ IDY T + ++R +G D +++ VG+
Sbjct: 1895319 WVKKLG-ADLAIDY-KTENVTEVIRDWTNGRGADLIFNTVGR 1895438
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 48/168 (28%), Positives = 74/168 (44%), Gaps = 4/168 (2%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G + AG +V+VG V + +G V G++A + + L P ++ +AA
Sbjct: 1512019 GNDFAGIIVEVGHAVKQFQVGDAVYGRAEKNRIGTFAEYIAIDEQMLALKPASLSFEEAA 1511840
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
++ GLT++ + PG +++ A AGG G Q+AK G V A +
Sbjct: 1511839 SIPLVGLTSYQALHDVLQATPGQKILIQAGAGGVGTFAIQLAKAMGLYVATTASSAGHDL 1511660
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGV----DAVYDGVGQATF 164
+A S+G AD +IDY R A V D VYD +G T
Sbjct: 1511659 VA-SLG-ADEIIDY----------RTEAFDEVLHDYDGVYDTIGGETL 1511552
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 41/132 (31%), Positives = 62/132 (46%), Gaps = 6/132 (4%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G + AG VV+VG S +G V Y G + GS + F +V + + P+ +T ++AA
Sbjct: 2735964 GYDAAGVVVEVGDHASLFSVGDEVYYAGAINRPGSNSEFQLVDERIVAKKPERLTFSEAA 2736143
Query: 61 AVLCQGLTAH-YLVDSSY-----PCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICG 114
A+ LTA+ L D + T+++ AAGG G + Q+A G VIG
Sbjct: 2736144 ALPLTALTAYEALTDRMHITFDAKSNLEKTILIIGAAGGVGSIATQLANHAGLTVIGTAS 2736323
Query: 115 GAEKAMLATSVG 126
E A + G
Sbjct: 2736324 RPETIDWAKAHG 2736359
Score = 43.9 bits (102), Expect = 0.018, Method: Composition-based stats.
Identities = 54/185 (29%), Positives = 82/185 (44%), Gaps = 21/185 (11%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFG-------------------GVGCTGSYAAFTV 41
G + +G +++VG GV + +G+ V F G G YA + V
Sbjct: 287070 GSDISGRIIEVGSGVDPSRVGQDVVLFPFTSSGADGTEHISEDMSFIGSEYDGGYAEYVV 287249
Query: 42 VQASALLEVPDGVTDAQAAAVL-CQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQ 100
A+ ++P + D +AV GLTA ++ + PG TV+V A+GG G L Q
Sbjct: 287250 WPATLCYDMP--LDDYVKSAVFSVSGLTAWHM-NEQLQLQPGQTVLVTGASGGVGSLNVQ 287420
Query: 101 MA-KLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGV 159
+A ++ GA VI + G + +G A V+ Y + + A VDAV D V
Sbjct: 287421 IASRVFGATVIAVVGDMKIEQELKRLG-AKYVVSY-RSDQLTEDILAVNSGPVDAVLDVV 287594
Query: 160 GQATF 164
G A F
Sbjct: 287595 GDALF 287609
Score = 42.4 bits (98), Expect = 0.052, Method: Composition-based stats.
Identities = 42/98 (42%), Positives = 55/98 (56%), Gaps = 1/98 (1%)
Frame = +2
Query: 66 GLTAHY-LVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATS 124
G+TA++ L+D P G TVVV AAAG G +V Q+AK++GARV+GI G AEK
Sbjct: 848063 GMTAYFGLLDIGNP-QSGETVVVSAAAGAVGSIVGQIAKIKGARVVGIAGSAEKIQYLKE 848239
Query: 125 VGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQA 162
D VI+Y L R P G+D ++ VG A
Sbjct: 848240 ELGFDEVINYKTEQIGEALDR-TCPDGIDVYFENVGGA 848350
>emb|BX830690.1|CNS0A0QY Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS14ZE11 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1278
Score = 99.0 bits (245), Expect = 5e-19, Method: Composition-based stats.
Identities = 64/168 (38%), Positives = 92/168 (54%), Gaps = 4/168 (2%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E G VV VG G++ M+G VAY G G+YA ++ A ++ VP + AA
Sbjct: 399 GMEAVGEVVAVGSGLTGRMIGDLVAYAGNP--MGAYAEEQILPADKVVPVPSSIDPIVAA 572
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+++ +G+TA +L+ + PG T++VHAAAGG G L+CQ A GA VIG EKA
Sbjct: 573 SIMLKGMTAQFLLRRCFKVEPGHTILVHAAAGGVGSLLCQWANALGATVIGTVSTNEKAA 752
Query: 121 LATSVGRADVVI----DYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
A G V++ D+V+ + + KGV+ VYD VG+ TF
Sbjct: 753 QAKEDGCHHVIMYKNEDFVSRVN-----DITSGKGVNVVYDSVGKDTF 881
>emb|FM209186.1| Pseudomonas aeruginosa LESB58 complete genome sequence
Length = 6601757
Score = 98.6 bits (244), Expect = 5e-19, Method: Composition-based stats.
Identities = 68/164 (41%), Positives = 96/164 (58%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G EGAG V +GPGVS G RVAY G G+YA+ + A LL++PD + AA
Sbjct: 2609578 GLEGAGVVAALGPGVSGLAPGDRVAY--ATGPLGAYASARLYPAERLLKLPDTLAFEDAA 2609405
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A+L +G+TAHYL+ ++YP GPG+ ++++ AAG G L+ A+ GA VIG+ AE
Sbjct: 2609404 ALLFKGITAHYLLHATYPVGPGTRILLYGAAGAVGQLMAAWARHLGAWVIGVVSKAESVE 2609225
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
A + G D V+ + A + A + VD VYD +G+ATF
Sbjct: 2609224 RARAAG-CDEVLVFDAASLAAQVAELTAGRKVDVVYDPIGRATF 2609096
Score = 97.8 bits (242), Expect = 1e-18, Method: Composition-based stats.
Identities = 65/164 (39%), Positives = 87/164 (53%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G EGAG V VG V+ +G RVAY G G+Y+ V+ L+ +P+G+ QAA
Sbjct: 25349 GSEGAGEVEAVGSEVTRFKVGDRVAY--ATGPLGAYSELHVLAEEKLVHLPNGIDFEQAA 25176
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
AV+ +GLT YL+ +Y G T++ HAAAGG GL CQ AK G ++IG EKA
Sbjct: 25175 AVMLKGLTTQYLLRQTYELRGGETILFHAAAGGVGLFACQWAKALGVQLIGTVSSPEKAR 24996
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
LA G + IDY ++ K VYD VG+ T+
Sbjct: 24995 LARQHGAWE-TIDYSHENVARRVLELTDGKKCPVVYDSVGKDTW 24867
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 54/164 (32%), Positives = 76/164 (46%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V VG V+ G RV G GS+A V ++ +P+G+ A AA
Sbjct: 6227793 GGEAAGVVAAVGEKVAHVRPGDRVMALTG---WGSFAEQVKVPGYNVMPIPEGMDFASAA 6227963
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A T+ + + PG T++V A+GG GL ++ K GARVI +K
Sbjct: 6227964 AFGMTYGTSMHALKQRANLQPGETLLVLGASGGVGLAAVEIGKAMGARVIAAASTPDKLA 6228143
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
+A + G AD +I+Y L +GVD +YD VG F
Sbjct: 6228144 VAKAAG-ADELINYSEGSLREQLKALTGGQGVDVIYDPVGGELF 6228272
Score = 59.7 bits (143), Expect = 3e-07, Method: Composition-based stats.
Identities = 40/102 (39%), Positives = 56/102 (54%), Gaps = 1/102 (0%)
Frame = +3
Query: 60 AAVLCQGLTAHY-LVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEK 118
+A+ G+TA++ L+D P G TVV+ AAG G + Q+A+L+G RV+GI GGAEK
Sbjct: 4072674 SALGMTGMTAYFALLDVGQPKN-GETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEK 4072850
Query: 119 AMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
D IDY D ++ PKG+D +D VG
Sbjct: 4072851 CRFLVEELGFDGAIDY-KNEDLAAGLKRECPKGIDVFFDNVG 4072973
Score = 58.5 bits (140), Expect = 8e-07, Method: Composition-based stats.
Identities = 41/100 (41%), Positives = 54/100 (54%), Gaps = 1/100 (1%)
Frame = -3
Query: 66 GLTAHY-LVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATS 124
G TA+ L+D P G T+VV AA G G V Q+ KL+G RV+G+ GGAEK A
Sbjct: 3455733 GFTAYMGLLDIGKP-QAGETLVVAAATGPVGATVGQIGKLKGCRVVGVAGGAEKCRHAVQ 3455557
Query: 125 VGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
V D +D+ A D+ + A P G+D Y+ VG F
Sbjct: 3455556 VLGFDACLDHHAA-DFAERLAEACPDGIDIYYENVGGKVF 3455440
Score = 52.4 bits (124), Expect = 5e-05, Method: Composition-based stats.
Identities = 52/161 (32%), Positives = 69/161 (42%), Gaps = 1/161 (0%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRV-AYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQA 59
G E AGTV VG VS +G+ V A G G YA F V L +PDG+ +A
Sbjct: 4618331 GLEIAGTVRAVGSEVSRFAVGEAVMALIPG----GGYAQFAVADERTTLHLPDGLGMEEA 4618498
Query: 60 AAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKA 119
AA+ +T + G T++VH A G G + K GA I +E
Sbjct: 4618499 AALPETFMTVWVNLFQRGGFKAGETLLVHGGASGIGTTATMLGKAFGAAKIFTTISSEAQ 4618678
Query: 120 MLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
A+ ADV IDY ++R +GVD + D V
Sbjct: 4618679 REASLRLGADVAIDYTEQDFVEEVLRGTEGRGVDVIVDIVA 4618801
Score = 40.8 bits (94), Expect = 0.14, Method: Composition-based stats.
Identities = 45/129 (34%), Positives = 64/129 (49%), Gaps = 2/129 (1%)
Frame = +2
Query: 36 YAAFTVVQASALLEVPDGVTDAQAAAVL-CQGLTAHYLVDSSYPCGPGSTVVVHAAAGGT 94
+ F VV A+ L+ +P +V GLTA++ + G T+ V AAAG
Sbjct: 1311134 WQTFAVVPAAGLIRLPRLEPLTHLLSVYGVAGLTAYFGLLECVRPMQGETLAVSAAAGAV 1311313
Query: 95 GLLVCQMAKLRGARVIGICGGAEK-AMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVD 153
G +V Q+A++RG R +GI GGA K A L +G D +DY T +R G+D
Sbjct: 1311314 GSIVGQIARIRGCRTVGIAGGASKCAWLVRELG-FDAALDY-KTGTLADDLRRTCSDGID 1311487
Query: 154 AVYDGVGQA 162
A +D G A
Sbjct: 1311488 AYFDNTGGA 1311514
Score = 40.8 bits (94), Expect = 0.15, Method: Composition-based stats.
Identities = 42/132 (31%), Positives = 58/132 (43%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V +VG G + + + A G G A VV A +L VP G++ A+AA
Sbjct: 1960160 GLECAGVVSEVGAGCTWQVGDRVCALLAG----GGMAEEVVVDARHVLPVPAGLSLAEAA 1960327
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+ TA + PG V++HA A G G Q+ K G G AE+
Sbjct: 1960328 GIPEVYATAWLNLFQLAALQPGEKVLLHAGASGVGSAGIQLCKAFGNPCWVSVGSAERLA 1960507
Query: 121 LATSVGRADVVI 132
S+G A V+
Sbjct: 1960508 YCESLGAAGGVL 1960543
Score = 37.7 bits (86), Expect = 1.1, Method: Composition-based stats.
Identities = 45/151 (29%), Positives = 58/151 (38%), Gaps = 25/151 (16%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAY------------------------FGGVGCTGSY 36
G E G V +GPGV +G RVA F G+ G +
Sbjct: 955539 GHEFCGVVAALGPGVEGLRIGDRVAVEPEYRCGECRYCREGRYNLCESMGFIGLMGDGGF 955360
Query: 37 AAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGL 96
A V A L +PD V QAA + + H L SS PG V G GL
Sbjct: 955359 AERARVPAYMLHRLPDAVGFRQAAVLEPAAVALHALRRSSL--APGQRCAVF-GLGPIGL 955189
Query: 97 LVCQMAKLRGAR-VIGICGGAEKAMLATSVG 126
L+ +A+LRG ++ I E+ LA G
Sbjct: 955188 LLVMLARLRGIEDIVAIDVSPERLALAGEFG 955096
Score = 35.8 bits (81), Expect = 4.9, Method: Composition-based stats.
Identities = 34/124 (27%), Positives = 50/124 (40%), Gaps = 17/124 (13%)
Frame = +2
Query: 29 GVGCTGSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVV- 87
G+ G Y+ VV A +L +P G+ AA +LC G+T+ Y + GPGS V V
Sbjct: 3339227 GLPTFGGYSERIVVSARFVLRIPQGLDPKAAAPLLCAGITS-YSPLRHWKVGPGSRVAVV 3339403
Query: 88 -------------HAAAGGTGLLVCQMAKLRGARVIG---ICGGAEKAMLATSVGRADVV 131
A L K AR +G + + +A GR D++
Sbjct: 3339404 GLGGLGHMGLKFARALGAEVALFTRSPGKEEEARRLGADQVILSTDPQRMAAVAGRFDLI 3339583
Query: 132 IDYV 135
+D V
Sbjct: 3339584 LDTV 3339595
>dbj|AP009493.1| Streptomyces griseus subsp. griseus NBRC 13350 DNA, complete genome
Length = 8545929
Score = 98.6 bits (244), Expect = 5e-19, Method: Composition-based stats.
Identities = 75/163 (46%), Positives = 96/163 (58%), Gaps = 3/163 (1%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G EGAG V ++G GV+ +G+RVA+ V GSYA V+ A + VPD V AA
Sbjct: 939221 GLEGAGRVERLGEGVTALAVGQRVAW---VDAPGSYAGQVVLPAERGIPVPDPVPTDVAA 939051
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A L QG+TAH+L S+YP G +V++HAAAGGTGLL+ Q+AK GARV+ EK
Sbjct: 939050 AALAQGVTAHFLTHSTYPVKAGESVLIHAAAGGTGLLLVQLAKHLGARVVATVSTEEKEK 938871
Query: 121 LATSVGRADVVIDY---VATPDWPPLVRAAAPKGVDAVYDGVG 160
LA G AD VI Y + + R +GVD V+DGVG
Sbjct: 938870 LARGAG-ADEVIRYDGLSSARTSAEVRRLTGGQGVDVVFDGVG 938745
Score = 82.8 bits (203), Expect = 3e-14, Method: Composition-based stats.
Identities = 73/166 (43%), Positives = 89/166 (53%), Gaps = 3/166 (1%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AGTV VG GV LGKRV G G YA TV +A L E+P+G+ A A
Sbjct: 4726138 GREVAGTVDAVGEGVGPEWLGKRVVAHIGTA-PGGYAELTVTEADRLHEIPEGLDAAGAV 4725962
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A++ G TA ++ S+ P P S VVV AAAGG G LV Q A+ GA VI + GG K
Sbjct: 4725961 AMIGTGRTALGILGST-PLDPDSVVVVTAAAGGIGTLVVQYARNAGATVIALAGGPAKVA 4725785
Query: 121 LATSVGRADVVIDYVATPDWPPLVR---AAAPKGVDAVYDGVGQAT 163
+ + G A++ +DY PDWP R AA VYD VG T
Sbjct: 4725784 RSEAEG-ANLALDY-TRPDWPRRAREHLEAAGLRATVVYDSVGGTT 4725653
Score = 57.8 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 54/160 (33%), Positives = 72/160 (45%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V+ +GPGV+ +G V + G YA V A LL VP GV +AA
Sbjct: 4382619 GLECAGRVLALGPGVTGWAVGDAVC---ALLAGGGYAEKVAVPAGQLLPVPKGVDLVEAA 4382789
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A+ T V PG T +VH + G G + Q+AK GARV G EK
Sbjct: 4382790 ALPEVTATVWSNVFMVAHLRPGETFLVHGGSSGIGTMAIQLAKAVGARVAVTAGSPEKLA 4382969
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
+G AD++++Y L A G D + D +G
Sbjct: 4382970 RCAELG-ADILVNYREQDFVEELRENTAGSGADVILDLIG 4383086
Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 50/166 (30%), Positives = 77/166 (46%), Gaps = 6/166 (3%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYF--GGVGCTGSYAAFTVVQASALLEVPDGVTDAQ 58
G + +G VV+ G V E +G V + G++A + L P ++ +
Sbjct: 6809948 GWDVSGVVVQPGVAVDEFAVGDEVIGYVREDFLSRGTFAEYVAAPVRTLARKPLSLSFEE 6810127
Query: 59 AAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAE- 117
AA + GLTA+ ++ + G TV+VHAAAGG G L Q+A+ G RV+G
Sbjct: 6810128 AAGLPLAGLTAYQVLHRTLKIREGDTVLVHAAAGGVGSLAVQIARHTGCRVVGTASARNH 6810307
Query: 118 ---KAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
+++ A V D ++D +RA P G DA +D VG
Sbjct: 6810308 EHLRSLGAEPVEYGDGLVDR---------LRALVPDGFDASFDTVG 6810418
Score = 55.8 bits (133), Expect = 5e-06, Method: Composition-based stats.
Identities = 49/114 (42%), Positives = 60/114 (52%), Gaps = 2/114 (1%)
Frame = -1
Query: 49 EVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRG-A 107
E+PD AA L QG TA + G TV V AAAGG G L Q A+LRG A
Sbjct: 7377297 ELPD------PAAHLSQGFTAWLGIVRGAQVRAGDTVFVSAAAGGVGTLAGQFARLRGAA 7377136
Query: 108 RVIGICGGAEKA-MLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
RVIG KA +L +G VI + + +RAAAP+G+DAV+D VG
Sbjct: 7377135 RVIGSTSSERKARVLVEQLGYDAAVIRGAGSME--DQLRAAAPEGLDAVFDNVG 7376980
Score = 54.3 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 41/110 (37%), Positives = 52/110 (47%)
Frame = +1
Query: 12 GPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHY 71
GPGV+ +G RV + A V A L+ VPDG T QAA+V LTA
Sbjct: 7169344 GPGVTRLAVGDRVMGL----LPQAMAPVAVADARTLVRVPDGWTLRQAASVPVAFLTAEL 7169511
Query: 72 LVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAML 121
+ GPG V+VH A GG GL Q+A+ GA V + A+L
Sbjct: 7169512 GLVEGAGLGPGDRVLVHTATGGLGLAALQLARRAGAEVFATASPGKHALL 7169661
Score = 52.8 bits (125), Expect = 4e-05, Method: Composition-based stats.
Identities = 43/101 (42%), Positives = 52/101 (51%), Gaps = 4/101 (3%)
Frame = -2
Query: 66 GLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSV 125
G+TA + PG T+V+ A+G G LV Q+A L GARVIG EKA T +
Sbjct: 952226 GMTAWGTLTKYMTISPGETLVISGASGPVGALVGQLAALAGARVIGTTSSPEKADYLTGL 952047
Query: 126 GRADVVIDYV----ATPDWPPLVRAAAPKGVDAVYDGVGQA 162
G D VI Y A LVR AAP GVD +D +G A
Sbjct: 952046 G-FDAVIVYRHGDGADTVGDALVR-AAPDGVDRYFDNLGGA 951930
Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 41/96 (42%), Positives = 47/96 (48%), Gaps = 1/96 (1%)
Frame = +1
Query: 66 GLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGA-RVIGICGGAEKAMLATS 124
GLTA+ + G V V AAG G V QMAKL+GA RVIG G EK L T
Sbjct: 6011395 GLTAYAGLFDVASFQEGDAVFVSGAAGAVGSQVGQMAKLKGASRVIGSAGSDEKVKLLTE 6011574
Query: 125 VGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
D +Y P L R AAP G+D +D VG
Sbjct: 6011575 EYGFDAAFNYKNGPVRDQL-REAAPDGIDVYFDNVG 6011679
Score = 49.3 bits (116), Expect = 4e-04, Method: Composition-based stats.
Identities = 39/85 (45%), Positives = 50/85 (58%)
Frame = -2
Query: 81 PGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDW 140
PG T++VHAAAGG G Q+ K GA+VIG+ GG EKA +A +G D+VID A
Sbjct: 583616 PGETLLVHAAAGGVGSAAVQLGKAAGAKVIGVVGGPEKAAVARGLG-CDLVIDRRAEDLV 583440
Query: 141 PPLVRAAAPKGVDAVYDGVGQATFA 165
+ A +G D VYD VG +A
Sbjct: 583439 AAVKEATGGRGADVVYDPVGGDAYA 583365
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 58/166 (34%), Positives = 79/166 (47%), Gaps = 1/166 (0%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGV-GCTGSYAAFTVVQASALLEVPDGVTDAQA 59
G + +G VV GPG + G V Y V G+YA F VV + + P G++ +A
Sbjct: 1018283 GNDVSGVVVGTGPGADDFRPGDEVWYLAPVFAGQGTYAEFHVVDQALVARKPAGLSHIEA 1018462
Query: 60 AAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKA 119
A + G+TA + G V+VH AGG G Q+A GA V+ + A
Sbjct: 1018463 AGLALVGVTAWEALVERAGVRAGERVLVHGGAGGVGSAAVQVAGALGAEVVTTARAGDHA 1018642
Query: 120 MLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATFA 165
+ + +G AD ID+ A D+ P VRA GVD V D VG T A
Sbjct: 1018643 FV-SGLG-ADHAIDFSAG-DYVPRVRALG--GVDVVLDTVGGNTLA 1018765
Score = 45.8 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 42/116 (36%), Positives = 59/116 (50%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G + AG V +VG GV +G V G + +YA F V+ A A +P G+T +AA
Sbjct: 5937977 GLDAAGVVDEVGEGVEGVAIGDHVFGEG----SDTYAEFAVLSAWA--RMPQGLTFEEAA 5937816
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGA 116
TA ++ PG T++V+ A+GG G V Q+A+ RG VIG G A
Sbjct: 5937815 GYPSVVETALRVI-REVGVRPGETLLVNGASGGVGSAVLQIARDRGVTVIGTAGAA 5937651
Score = 45.4 bits (106), Expect = 0.006, Method: Composition-based stats.
Identities = 48/163 (29%), Positives = 70/163 (42%), Gaps = 31/163 (19%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVA-------------------------------YFGG 29
G E AG VV++GPG + +G RV G
Sbjct: 727368 GHEAAGEVVELGPGTTTREVGDRVGTTWVQATCGRCAYCRRNLPLTGQSAMSCAAPVMTG 727189
Query: 30 VGCTGSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHA 89
+ G +A + V A++ + +PDG+ A AA VLC G TA + S P P + V
Sbjct: 727188 LTVQGGHAEYLCVAAASTVLLPDGLDYATAAPVLCAGYTAWSALRVSEP-RPHERIAV-L 727015
Query: 90 AAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVI 132
GG G L Q ++ G + I AEK ++T +G AD+V+
Sbjct: 727014 GIGGLGHLAVQYSRACGYETVAITRSAEKHEVSTRLG-ADLVV 726889
Score = 44.3 bits (103), Expect = 0.013, Method: Composition-based stats.
Identities = 44/109 (40%), Positives = 55/109 (50%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G EGAG V VGP S +G RV FG + +A V A L VPD + +AA
Sbjct: 7318195 GAEGAGVVTAVGPDASGVAVGDRV--FGLM--PECFAPTAVADARRLAAVPDDWSFTEAA 7318362
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARV 109
+V LTA Y + PG V+VHA AGG G+ Q+A+ GA V
Sbjct: 7318363 SVPIVFLTAWYALRDLADLRPGERVLVHAGAGGVGMAAIQLARHLGAEV 7318509
Score = 44.3 bits (103), Expect = 0.015, Method: Composition-based stats.
Identities = 41/109 (37%), Positives = 57/109 (52%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G EGAG V +VGPGV+ T +G RV S+A + A ++ +P+ T +AA
Sbjct: 7339783 GGEGAGVVTEVGPGVTGTAVGDRVMGL----LPDSFADTSAADARMVVRMPEDWTFQEAA 7339950
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARV 109
+V LTA Y + G V+VHA AGG G+ Q+A+ GA V
Sbjct: 7339951 SVPIVFLTARYALGDLAGLCAGERVLVHAGAGGVGMAAVQLARHLGAEV 7340097
Score = 43.5 bits (101), Expect = 0.021, Method: Composition-based stats.
Identities = 49/161 (30%), Positives = 71/161 (44%), Gaps = 1/161 (0%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V++V P V+ +G RV FG G+++ V AL +P T QAA
Sbjct: 7592648 GGEVAGIVIEVAPDVTTMAVGDRV--FGLA--EGTFSRQAVGDHRALHAMPGCWTFTQAA 7592481
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+TA + + G V++HA GG G+ Q+A+ GA V K
Sbjct: 7592480 TAPIVWMTALLGLKNIAGLSAGEKVLIHAGTGGVGMAAIQLARHYGAEVYAT-ASLPKWD 7592304
Query: 121 LATSVGRADVVIDYVATPDWPP-LVRAAAPKGVDAVYDGVG 160
+ S+G D I T D+ ++R GVD V D +
Sbjct: 7592303 VLRSLGVDDRHIADSRTLDFEEHILRETGGSGVDVVLDSLA 7592181
Score = 42.0 bits (97), Expect = 0.067, Method: Composition-based stats.
Identities = 42/146 (28%), Positives = 56/146 (38%), Gaps = 37/146 (25%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCT--------------------------- 33
G E AG V + GPGV+ +G RV GVGC
Sbjct: 8276741 GHEIAGIVAETGPGVTRFKVGDRV----GVGCMVDSCGTCDACLMGREQHCAEGNTQTYN 8276908
Query: 34 ----------GSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGS 83
G Y+ VV L +P+G+ +AA +LC G+T Y + GPG
Sbjct: 8276909 ALDRNGEPTYGGYSTHLVVTEKFALSIPEGIALDEAAPLLCAGITT-YSPLRRWGAGPGK 8277085
Query: 84 TVVVHAAAGGTGLLVCQMAKLRGARV 109
V V GG G + ++A GA V
Sbjct: 8277086 KVAV-VGLGGLGHMAVKIAHALGAEV 8277160
Score = 39.3 bits (90), Expect = 0.40, Method: Composition-based stats.
Identities = 43/159 (27%), Positives = 67/159 (42%), Gaps = 26/159 (16%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVS------------------------ETMLGKRVAYFGGVGCTGSY 36
G + AG V++ GPGV+ +TML +G G
Sbjct: 1383476 GSDLAGVVLRTGPGVNAWNPGDEVVAHCLSVELESSDGHNDTMLDPEQRIWGFETNFGGL 1383655
Query: 37 AAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCG--PGSTVVVHAAAGGT 94
A +V+++ L+ P ++ +AAA TA+ + S G G V++ A+GG
Sbjct: 1383656 AEIALVKSNQLMPKPKHLSWEEAAAPGLVNSTAYRQLVSRNGAGMKQGDNVLIWGASGGL 1383835
Query: 95 GLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVID 133
G Q A GA I + EKA + ++G A+ VID
Sbjct: 1383836 GSYATQFALAGGANPICVVSSPEKAEICRAMG-AEAVID 1383949
Score = 38.1 bits (87), Expect = 1.0, Method: Composition-based stats.
Identities = 41/128 (32%), Positives = 60/128 (46%), Gaps = 1/128 (0%)
Frame = -1
Query: 35 SYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGT 94
++A TVV+A +++PD + AA + C LT V + G G TVVV GG
Sbjct: 3557265 AFAERTVVRAVQAVKIPDDLPLTSAALIGCGVLTGVGAVLNRAKVGLGDTVVV-IGTGGI 3557089
Query: 95 GLLVCQMAKLRGA-RVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVD 153
GL V Q A+L GA V+ + K +A G ++ + D VR P G D
Sbjct: 3557088 GLNVLQGARLAGALTVVAVDSNPAKEAVARQFG----ATHFLTSADG---VRDILPDGAD 3556930
Query: 154 AVYDGVGQ 161
++ VG+
Sbjct: 3556929 HAFECVGR 3556906
Score = 35.8 bits (81), Expect = 5.2, Method: Composition-based stats.
Identities = 38/109 (34%), Positives = 54/109 (49%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G+E AG V++ GPGV+ G RV ++A TV A ++ VP+ + AA
Sbjct: 7121911 GDEAAGVVLETGPGVTHLAPGDRVLGI----VPRAFATRTVADARMVVRVPEAWSYETAA 7122078
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARV 109
+V LTA + G V+VHA AGG G+ Q+A+ GA V
Sbjct: 7122079 SVPLVFLTAWMGLVELAGVRAGDAVLVHAGAGGVGMAAVQVARHLGAEV 7122225
>dbj|AP007151.1| Aspergillus oryzae RIB40 genomic DNA, SC005
Length = 4429080
Score = 98.6 bits (244), Expect = 6e-19, Method: Composition-based stats.
Identities = 68/167 (40%), Positives = 92/167 (55%), Gaps = 3/167 (1%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETM---LGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDA 57
G EGAGT+V+VG V+ + +G RVA F G++A + A ++ +P V+
Sbjct: 1790741 GREGAGTIVQVGAKVTSSYGLKVGDRVAVF----TQGAFAEYVAAPAEGVMRLPPSVSTK 1790908
Query: 58 QAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAE 117
AAV+ QGLTA +V S+ G ++V AAAGGTG L+ QM K GA VIG E
Sbjct: 1790909 VGAAVMLQGLTAWTMVQESHKVSSGQIILVQAAAGGTGGLLVQMCKYLGATVIGAVSSVE 1791088
Query: 118 KAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
KA +A G D +I Y T ++R KG AV+ GVGQ+TF
Sbjct: 1791089 KAKVAEENG-CDHIILYKTTNVEEQVMRLTGNKGCHAVFSGVGQSTF 1791226
Score = 62.0 bits (149), Expect = 6e-08, Method: Composition-based stats.
Identities = 42/113 (37%), Positives = 61/113 (53%), Gaps = 2/113 (1%)
Frame = +2
Query: 50 VPDGVTDAQAAAVL-CQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGA- 107
+P G A +VL GLTA++ + PG TVVV AAG TG++ Q+AK++GA
Sbjct: 357893 IPPGCRPTDAMSVLGMTGLTAYFGMTEVGQPKPGDTVVVSGAAGATGMVAGQIAKIKGAK 358072
Query: 108 RVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
RV+G+ G AEK + D I+Y DW ++ A P+ +D +D G
Sbjct: 358073 RVVGLAGSAEKCAFLRNELGFDAAINY-KDKDWKKQLKDATPEYIDVFFDNTG 358228
Score = 45.8 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 31/92 (33%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
Frame = +1
Query: 34 GSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGG 93
G++ + + A + +PDG+ AA +LC GLT + + S PG VV+ A GG
Sbjct: 320353 GTFQQYVLGPAHYVTPIPDGLESDAAAPMLCAGLTVYAALKRS-NARPGQWVVISGAGGG 320529
Query: 94 TGLLVCQMA-KLRGARVIGICGGAEKAMLATS 124
G + Q+A K G RVIG+ G+++ ++ S
Sbjct: 320530 LGHIAVQLASKGMGLRVIGVDHGSKEELVKES 320625
Score = 38.1 bits (87), Expect = 0.84, Method: Composition-based stats.
Identities = 30/115 (26%), Positives = 54/115 (46%)
Frame = +2
Query: 26 YFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTV 85
+ G G Y+ + ++ ++++PD + A+AA +LC G+T + + + CGPG V
Sbjct: 3627524 HLNGGKSYGGYSLYNRTPSNFVIKIPDAIPSAEAAPMLCGGVTVYSPLKHN-GCGPGKRV 3627700
Query: 86 VVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDW 140
+ G V + +V+ I A K+ + +G AD+ I PDW
Sbjct: 3627701 GIIGVGGLGHFGVLFAKAMGADKVVAISRKASKSADSLKMG-ADIYIATDDEPDW 3627862
>gb|AE016877.1| Bacillus cereus ATCC 14579, complete genome
Length = 5411809
Score = 98.6 bits (244), Expect = 6e-19, Method: Composition-based stats.
Identities = 68/161 (42%), Positives = 88/161 (54%), Gaps = 1/161 (0%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G EGAG V KVG V+ LG R+A+ + A V + ++ +PD ++ AA
Sbjct: 3430652 GYEGAGIVEKVGADVTTINLGDRIAF---ADVPFANAELVAVPSEKVIPLPDSISFETAA 3430822
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+VL QGLTAHYL SY G +VHAAAGG G L+ QM KL+G VIG+ EKA
Sbjct: 3430823 SVLLQGLTAHYLTHDSYQLKQGDIALVHAAAGGVGQLLIQMIKLQGGTVIGLTSSKEKAK 3431002
Query: 121 LATSVGRADVVIDYVATPDWP-PLVRAAAPKGVDAVYDGVG 160
+AT G AD V Y T W ++ GV+ VY+ VG
Sbjct: 3431003 IATLAG-ADHVFLY--TEAWHMKVLEMTNGTGVNVVYESVG 3431116
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 45/164 (27%), Positives = 79/164 (48%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G + AG + KVG V+ +G + G++A + + + P ++ +AA
Sbjct: 3454353 GNDFAGVITKVGSKVTRFKVGDEIYARPRKNKIGTFAEYIAIHEDDIALKPKNLSFEEAA 3454532
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
++ GLT++ + G +++HA +GG G Q+AK+ GA ++ A
Sbjct: 3454533 SIPLVGLTSYQALHDIMQLQKGQKILIHAGSGGVGTFAIQLAKIMGA-IVTTTASEAGAN 3454709
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
L TS+G AD +I+Y T + ++ K DAV+D +G AT
Sbjct: 3454710 LVTSLG-ADEIINY-KTEKFEDIL-----KNYDAVFDTIGGATL 3454820
Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 50/160 (31%), Positives = 70/160 (43%), Gaps = 1/160 (0%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G + G V +VG V G+RV F GSYA + V + +P V AA
Sbjct: 2049644 GIDATGIVERVGSHVKNIHPGQRVIAFPQ---NGSYAEYVVANENLTFVLPHEVDFQTAA 2049474
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAK-LRGARVIGICGGAEKA 119
A T++ L+ + G +V++HAAAGG G Q+AK L VIG G K
Sbjct: 2049473 ACPIVSFTSYNLLANVARLQQGESVLIHAAAGGIGTTAIQLAKLLEAGTVIGTVGSEAKK 2049294
Query: 120 MLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGV 159
+A G AD VI + + +GVD + D +
Sbjct: 2049293 EIALDAG-ADYVICHQDEDFVEKVNELTNGEGVDVILDSI 2049177
Score = 53.1 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 40/160 (25%), Positives = 69/160 (43%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G EG G V V VS ++GKRV G G++ + A ++ +PD + D AA
Sbjct: 994626 GYEGVGIVEDVRAFVSRELIGKRVLPLRG---EGTWQEYVKTSADFVVPIPDSIDDFTAA 994456
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+ LTA + ++V+A G L Q++++ ++I + ++
Sbjct: 994455 QMYINPLTAWVTCTETLNLQRNDVLLVNACGSAIGHLFAQLSQILNFQLIAVTRNSKHTE 994276
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
+G A VID P + ++ +G DA D +G
Sbjct: 994275 ELLQLG-AHHVIDTSTAPLYETVMTLTNGRGADAAIDSIG 994159
Score = 52.8 bits (125), Expect = 4e-05, Method: Composition-based stats.
Identities = 45/137 (32%), Positives = 68/137 (49%), Gaps = 2/137 (1%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEV-PDGVTDAQA 59
G E +G + +G V++ G +V + G YA +T V S L+ + P VT +A
Sbjct: 175059 GVELSGEIEDIGTDVTQFKKGDQVFALTELN-LGGYAEYTCVHESGLIALKPTNVTYEEA 174883
Query: 60 AAVLCQGLTA-HYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEK 118
A + G +A H+L G V+++ A+G G Q+AK GA V IC +
Sbjct: 174882 AVIPFGGTSALHFLRKGQIK--KGQRVLIYGASGSVGTAAVQLAKYFGATVTAICSSSNF 174709
Query: 119 AMLATSVGRADVVIDYV 135
L T++G AD VIDY+
Sbjct: 174708 D-LVTALG-ADNVIDYM 174664
Score = 49.3 bits (116), Expect = 4e-04, Method: Composition-based stats.
Identities = 37/134 (27%), Positives = 61/134 (45%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G + AG V +G V+ +G V + G+YA + V + + P ++ +AA
Sbjct: 3341021 GWDVAGVVAAIGKNVTAFKVGDEVYSRPDIERNGTYAEYVAVDEKYVAKKPRNLSFEEAA 3340842
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
++ GLT+ + G+ V++HA +GG G Q+AK GA V +
Sbjct: 3340841 SIPLVGLTSWQSLVKFANVQKGNKVLIHAGSGGIGTFAIQLAKSFGAYV-ATTTSTKNMQ 3340665
Query: 121 LATSVGRADVVIDY 134
+G AD V+DY
Sbjct: 3340664 FVKDLG-ADTVVDY 3340626
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 51/190 (26%), Positives = 80/190 (42%), Gaps = 26/190 (13%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYF-------------------------GGVGCTGS 35
G EG G V K+ V+ +G RV+ G G
Sbjct: 2164518 GHEGVGIVTKIADDVTSLKIGDRVSIAWMFQSCGRCEYCVTGRETFCREVKNAGYSVDGG 2164697
Query: 36 YAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTG 95
A +V A ++VP+G+ AQA+++ C G+T + + S P +V++ GG G
Sbjct: 2164698 MAEQCIVTADYAVKVPEGLDPAQASSITCAGVTTYKAIKVS-DIKPSQPIVIY-GCGGLG 2164871
Query: 96 LLVCQMAK-LRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDA 154
L Q AK + GA+VI + +K LA VG AD+ I+ ++ +V+ A
Sbjct: 2164872 NLAIQYAKNVFGAKVIAVDINDDKLALAKEVG-ADMTINPISQGPADKIVQEKFGGAYAA 2165048
Query: 155 VYDGVGQATF 164
V V + F
Sbjct: 2165049 VVTAVSKVAF 2165078
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 46/181 (25%), Positives = 75/181 (41%), Gaps = 17/181 (9%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCT-----------------GSYAAFTVVQ 43
G +G+G V ++G GVS L V +G G++A + +V
Sbjct: 2642557 GSDGSGIVTEIGEGVSNITLHTEVIINPSIGWEHATEVPELPEVLGGPKDGTFAEYVIVP 2642736
Query: 44 ASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAK 103
A ++E P +T ++ + LTA+ + + G V++ GG AK
Sbjct: 2642737 AENVVEKPSYLTWEESGVLSLSALTAYRALFTKGRLKCGEHVLIPGIGGGVATFAMLFAK 2642916
Query: 104 LRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQAT 163
GA+V K LA G AD I + +T +W ++ + VD + D +G AT
Sbjct: 2642917 AIGAKVSVTSRVENKRELAEKYG-AD--ISFNSTGNWEESLQG---EKVDLIIDSIGPAT 2643078
Query: 164 F 164
F
Sbjct: 2643079 F 2643081
Score = 36.6 bits (83), Expect = 3.1, Method: Composition-based stats.
Identities = 45/164 (27%), Positives = 61/164 (37%), Gaps = 26/164 (15%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGC-------------------------TGS 35
G E +G V+++G GV+ +G RV C G
Sbjct: 667016 GHEFSGEVIEIGEGVTSHKVGDRVVVEPIYSCGKCEACKHGHYNVCEQLVFHGLGGEGGG 667195
Query: 36 YAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTG 95
++ +TVV + +PD +T Q A V + H + S G V G G
Sbjct: 667196 FSEYTVVPEDMVHHIPDEMTYEQGALVEPAAVAVHAVRQSKLKEGEAVAVF---GCGPIG 667366
Query: 96 LLVCQMAKLRGAR-VIGICGGAEKAMLATSVGRADVVIDYVATP 138
LLV Q AK GA VI + E+ LA G DYV P
Sbjct: 667367 LLVIQAAKAAGATPVIAVELSKERQELAKLAG-----ADYVLNP 667483
>ref|XM_002328713.1| Populus trichocarpa predicted protein, mRNA
Length = 1454
Score = 98.6 bits (244), Expect = 7e-19, Method: Composition-based stats.
Identities = 64/168 (38%), Positives = 93/168 (55%), Gaps = 4/168 (2%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E G V+ +GPGV++ +G+ V Y GG GSY ++ A+ ++ VP ++ + AA
Sbjct: 421 GMEAVGEVIALGPGVTDRKVGEVVGYAGGP--MGSYTEEQILPANKVVPVPPSISPSVAA 594
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+V+ +G+TA +L+ + PG T++V AAAGG G L+CQ A GA VIG EKA
Sbjct: 595 SVMLKGMTAQFLLRRCFKVEPGHTILVQAAAGGVGSLLCQWANSLGATVIGTVSTKEKAA 774
Query: 121 LATSVGRADVVI----DYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
A G V+I D+ A + + GVD VYD VG+ TF
Sbjct: 775 QAKDDGCHHVIIYKEEDFAARVN-----EITSGNGVDVVYDSVGKDTF 903
>gb|AY087625.1| Arabidopsis thaliana clone 37197 mRNA, complete sequence
Length = 1313
Score = 98.2 bits (243), Expect = 7e-19, Method: Composition-based stats.
Identities = 64/168 (38%), Positives = 92/168 (54%), Gaps = 4/168 (2%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E G VV VG G++ M+G VAY G G+YA ++ A ++ VP + AA
Sbjct: 416 GMEAVGEVVAVGSGLTGRMIGDLVAYAGNP--MGAYAEEQILPADKVVPVPSSIDPIVAA 589
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+++ +G+TA +L+ + PG T++VHAAAGG G L+CQ A GA VIG EKA
Sbjct: 590 SIMLKGMTAQFLLRRCFKVEPGHTILVHAAAGGVGSLLCQWANALGATVIGTVSTNEKAA 769
Query: 121 LATSVGRADVVI----DYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
A G V++ D+V+ + + KGV+ VYD VG+ TF
Sbjct: 770 QAKEDGCHHVIMYKNEDFVSRVN-----DITSGKGVNVVYDSVGKDTF 898
>gb|FJ372981.1| Gossypium hirsutum Ted2 mRNA, complete cds
Length = 1371
Score = 98.2 bits (243), Expect = 7e-19, Method: Composition-based stats.
Identities = 68/168 (40%), Positives = 90/168 (53%), Gaps = 4/168 (2%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E G V VGPG++ +G VAY G GSYA ++ A L+ VP V AA
Sbjct: 403 GMEAVGEVTAVGPGLTGRKVGDIVAYAGNP--MGSYAEEQILPADKLVPVPPSVDPITAA 576
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+++ +G+TA +LV + G TV+VHAAAGG G L+CQ A GA VIG EKA
Sbjct: 577 SIMLKGMTAQFLVRRCFKVESGHTVLVHAAAGGVGSLLCQWANALGATVIGTVSTKEKAA 756
Query: 121 LATSVGRADVVI----DYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
A G V+I D+V+ + + KGV+ VYD VG+ TF
Sbjct: 757 QAKEDGCHHVIIYKEEDFVSRVN-----EITSGKGVEVVYDSVGKDTF 885
>ref|NM_125544.3| Arabidopsis thaliana NADP-dependent oxidoreductase, putative
(AT5G61510) mRNA, complete cds
Length = 1383
Score = 98.2 bits (243), Expect = 7e-19, Method: Composition-based stats.
Identities = 64/168 (38%), Positives = 92/168 (54%), Gaps = 4/168 (2%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E G VV VG G++ M+G VAY G G+YA ++ A ++ VP + AA
Sbjct: 453 GMEAVGEVVAVGSGLTGRMIGDLVAYAGNP--MGAYAEEQILPADKVVPVPSSIDPIVAA 626
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+++ +G+TA +L+ + PG T++VHAAAGG G L+CQ A GA VIG EKA
Sbjct: 627 SIMLKGMTAQFLLRRCFKVEPGHTILVHAAAGGVGSLLCQWANALGATVIGTVSTNEKAA 806
Query: 121 LATSVGRADVVI----DYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
A G V++ D+V+ + + KGV+ VYD VG+ TF
Sbjct: 807 QAKEDGCHHVIMYKNEDFVSRVN-----DITSGKGVNVVYDSVGKDTF 935
>emb|BX832833.1|CNS0A0KZ Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL15ZF07 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 1259
Score = 98.2 bits (243), Expect = 8e-19, Method: Composition-based stats.
Identities = 64/168 (38%), Positives = 92/168 (54%), Gaps = 4/168 (2%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E G VV VG G++ M+G VAY G G+YA ++ A ++ VP + AA
Sbjct: 363 GMEAVGEVVAVGSGLTGRMIGDLVAYAGNP--MGAYAEEQILPADKVVPVPSSIDAIVAA 536
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+++ +G+TA +L+ + PG T++VHAAAGG G L+CQ A GA VIG EKA
Sbjct: 537 SIMLKGMTAQFLLRRCFKVEPGHTILVHAAAGGVGSLLCQWANALGATVIGTVSTNEKAA 716
Query: 121 LATSVGRADVVI----DYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
A G V++ D+V+ + + KGV+ VYD VG+ TF
Sbjct: 717 QAEEDGCHHVIMYKNEDFVSRVN-----DITSGKGVNVVYDSVGKDTF 845
>emb|BX829585.1|CNS0A17R Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB22ZG08 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 1315
Score = 98.2 bits (243), Expect = 8e-19, Method: Composition-based stats.
Identities = 64/168 (38%), Positives = 92/168 (54%), Gaps = 4/168 (2%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E G VV VG G++ M+G VAY G G+YA ++ A ++ VP + AA
Sbjct: 453 GMEAVGEVVAVGSGLTGRMIGDLVAYAGNP--MGAYAEEQILPADKVVPVPSSIDPIVAA 626
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+++ +G+TA +L+ + PG T++VHAAAGG G L+CQ A GA VIG EKA
Sbjct: 627 SIMLKGMTAQFLLRRCFKVEPGHTILVHAAAGGVGSLLCQWANALGATVIGTVSTNEKAA 806
Query: 121 LATSVGRADVVI----DYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
A G V++ D+V+ + + KGV+ VYD VG+ TF
Sbjct: 807 QAKEDGCHHVIMYKNEDFVSRVN-----DITSGKGVNVVYDSVGKDTF 935
>emb|CU633750.1| Cupriavidus taiwanensis str. LMG19424 chromosome 2, complete genome
Length = 2502411
Score = 98.2 bits (243), Expect = 8e-19, Method: Composition-based stats.
Identities = 69/164 (42%), Positives = 90/164 (54%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V VG GVS G RV Y G G+Y+ +V A+ L+ +PD ++ AA
Sbjct: 878957 GVEAAGVVQAVGAGVSHVAEGDRVTYTGFTNTLGAYSTERLVPAAPLIRLPDAISFETAA 879136
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A+ +GLT+ YL+ YP G T+++HAAAGG GL+V Q AKL G VIG KA
Sbjct: 879137 AMTMRGLTSAYLMRRIYPFRGGETILLHAAAGGVGLIVSQWAKLLGLTVIGTVSTEAKAE 879316
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
LA + G D VIDY + GV V+D VG++TF
Sbjct: 879317 LARAHG-CDHVIDYSREDVATRVRELTDGTGVSVVFDSVGRSTF 879445
Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 58/145 (40%), Positives = 79/145 (54%), Gaps = 1/145 (0%)
Frame = +1
Query: 21 GKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCG 80
G RV Y G V G+Y+ +V A+ L+ +PD + AAA+ +GLT+ YL+ +P
Sbjct: 2434441 GDRVTYTGFVNTLGAYSTERLVPAAPLIRLPDSIAFETAAAMTMRGLTSAYLMRRIHPFQ 2434620
Query: 81 PGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDW 140
G T+++HAAAGG GL+V Q AKL G VIG KA LA + G ++ Y D
Sbjct: 2434621 AGDTILLHAAAGGVGLIVSQWAKLLGLTVIGTVSTEAKAELARAHGCDHII--YYTREDV 2434794
Query: 141 PPLVRAAAPK-GVDAVYDGVGQATF 164
VR GV V+D VG+ TF
Sbjct: 2434795 AKRVRELTDGVGVSVVFDSVGKTTF 2434869
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 60/182 (32%), Positives = 82/182 (45%), Gaps = 17/182 (9%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRV--AYFGG--------------VGCTGSYAAFTVVQA 44
G + G VV +G GV++ +G V +F G V G + + V+
Sbjct: 371366 GSDMRGEVVAIGDGVADFAVGDAVISTFFTGWLDGVQPRHSKPLGVPGPGMLSEYVVLAE 371545
Query: 45 SALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKL 104
AL+ P + AQA+ + C GLTA + + PG TVVV GG L Q+A+
Sbjct: 371546 DALVAAPRTLDAAQASTLTCAGLTAWQALAEATVTRPGDTVVV-IGTGGVALFAVQIARA 371722
Query: 105 RGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRA-AAPKGVDAVYDGVGQAT 163
+GARVI + G +K A +VG A I TPDWP VR G D V + G
Sbjct: 371723 QGARVIVVSGSDDKLARAQAVGAAH-GIHRGRTPDWPAAVRELTGGHGADHVLELAGGDN 371899
Query: 164 FA 165
F
Sbjct: 371900 FG 371905
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 54/137 (39%), Positives = 68/137 (49%), Gaps = 1/137 (0%)
Frame = -1
Query: 29 GVGCTGSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVH 88
G G GSYA + V ++ +PD V A+AAAV L A + PG TV+VH
Sbjct: 924615 GAGQWGSYAEYVAVGQDCVVPIPDNVGFAEAAAVPTPALAAWTGLFDDGALRPGQTVLVH 924436
Query: 89 AAAGGTGLLVCQMAKLRGARVIGICGGAEK-AMLATSVGRADVVIDYVATPDWPPLVRAA 147
AG G Q+A+ GA V C A + A++A D+ IDY A+ D VRA
Sbjct: 924435 GGAGAVGTFAVQLARAAGATVAATCSAARRDALMALG---CDLAIDYRAS-DIGAAVRAW 924268
Query: 148 APKGVDAVYDGVGQATF 164
AP GVD V D VG T
Sbjct: 924267 APAGVDLVLDAVGCGTL 924217
Score = 48.9 bits (115), Expect = 5e-04, Method: Composition-based stats.
Identities = 48/163 (29%), Positives = 74/163 (45%), Gaps = 3/163 (1%)
Frame = -2
Query: 1 GEEGAGTVVKVGPG-VSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQA 59
G EGAG VV G ++ ++GK VA GG Y+ + + A L +P+G T A
Sbjct: 943283 GNEGAGVVVDAGSSPAAQALMGKTVAAIGG----AMYSQYRCISADQCLVLPEGATPADG 943116
Query: 60 AAVLCQGLTAHYLVDSSYPCGPGSTVVVH-AAAGGTGLLVCQMAKLRGARVIGICGGAEK 118
A+ LTA +V++ G + +VH AAA G ++ Q+ G +++ I E+
Sbjct: 943115 ASSFVNPLTALGMVETMRR--EGHSALVHTAAASNLGQMLNQICLKDGIKLVNIVRKQEQ 942942
Query: 119 AMLATSVGRADVVIDYVATPDW-PPLVRAAAPKGVDAVYDGVG 160
L + G V A+P + L A A G +D G
Sbjct: 942941 VDLLKAQGAIHVC--NAASPTFMHELTEALAATGATIAFDATG 942819
Score = 36.2 bits (82), Expect = 3.6, Method: Composition-based stats.
Identities = 48/167 (28%), Positives = 74/167 (44%), Gaps = 3/167 (1%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGG---VGCTGSYAAFTVVQASALLEVPDGVTDA 57
G + AG VV+ GP +LG +V GG + G++ + + A+++ P+ V+
Sbjct: 1514118 GRDYAGLVVE-GP---SQLLGLQVWGSGGELGIRRDGTHGKYLRIDAASVRAKPESVSLL 1513951
Query: 58 QAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAE 117
+A AV +TA+ + + GSTV+V G G Q+A RGARV + A+
Sbjct: 1513950 EAGAVGVPFITAYEGLRRAGMPQAGSTVLVCGGNGKVGQATIQIATARGARVFAVERTAQ 1513771
Query: 118 KAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
S G +ID P + G D VY+ VG F
Sbjct: 1513770 -PYRGHSSGTVR-MIDASREPIAEVVREETGGHGADIVYNTVGSPYF 1513636
>gb|BT029771.1| Arabidopsis thaliana At5g61510 mRNA, complete cds
Length = 1221
Score = 98.2 bits (243), Expect = 8e-19, Method: Composition-based stats.
Identities = 64/168 (38%), Positives = 92/168 (54%), Gaps = 4/168 (2%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E G VV VG G++ M+G VAY G G+YA ++ A ++ VP + AA
Sbjct: 430 GMEAVGEVVAVGSGLTGRMIGDLVAYAGNP--MGAYAEEQILPADKVVPVPSSIDPIVAA 603
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+++ +G+TA +L+ + PG T++VHAAAGG G L+CQ A GA VIG EKA
Sbjct: 604 SIMLKGMTAQFLLRRCFKVEPGHTILVHAAAGGVGSLLCQWANALGATVIGTVSTNEKAA 783
Query: 121 LATSVGRADVVI----DYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
A G V++ D+V+ + + KGV+ VYD VG+ TF
Sbjct: 784 QAKEDGCHHVIMYKNEDFVSRVN-----DITSGKGVNVVYDSVGKDTF 912
>gb|CP001176.1| Bacillus cereus B4264, complete genome
Length = 5419036
Score = 98.2 bits (243), Expect = 8e-19, Method: Composition-based stats.
Identities = 67/161 (41%), Positives = 88/161 (54%), Gaps = 1/161 (0%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G EGAG V KVG V+ LG R+A+ + A V + ++ +PD ++ AA
Sbjct: 3361686 GYEGAGIVEKVGADVTTINLGDRIAF---ADVPFANAELVAVPSEKVIPLPDSISFETAA 3361856
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+VL QGLTAHYL SY G +VHAAAGG G L+ QM KL+G VIG+ EKA
Sbjct: 3361857 SVLLQGLTAHYLTHDSYQLKQGDIALVHAAAGGVGQLLIQMIKLQGGTVIGLTSSKEKAK 3362036
Query: 121 LATSVGRADVVIDYVATPDW-PPLVRAAAPKGVDAVYDGVG 160
+AT G AD V Y +W ++ GV+ VY+ VG
Sbjct: 3362037 IATLAG-ADRVSLY--NEEWHTKVLEMTNGTGVNVVYESVG 3362150
Score = 62.8 bits (151), Expect = 4e-08, Method: Composition-based stats.
Identities = 46/164 (28%), Positives = 79/164 (48%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G + +G + KVG V+ +G + G++A + + + P ++ +AA
Sbjct: 3387595 GNDFSGVITKVGSKVTRFKVGDEIYARPRKNKIGTFAEYIAIHEDDIALKPKNLSFEEAA 3387774
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
++ GLT++ + G +++HA +GG G Q+AK+ GA V A A
Sbjct: 3387775 SIPLVGLTSYQALHDIMQLQKGQKILIHAGSGGVGTFAIQLAKIMGATVTTTASEA-GAN 3387951
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
L TS+G AD +I+Y T + ++ K DAV+D +G AT
Sbjct: 3387952 LVTSLG-ADEIINY-KTEKFEDIL-----KNYDAVFDTIGGATL 3388062
Score = 60.8 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 49/133 (36%), Positives = 63/133 (47%), Gaps = 1/133 (0%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G + G V +VG V G+RV F GSYA + V + +P V AA
Sbjct: 2024379 GIDATGIVERVGSHVKNIHPGQRVIAFPQ---NGSYAEYVVANENLTFVLPHEVDFHTAA 2024209
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGAR-VIGICGGAEKA 119
A T++ L+ + G +V++HAAAGG G Q AKL GAR VIG G K
Sbjct: 2024208 ACPIVSFTSYNLLANVARIQKGESVLIHAAAGGIGTTAIQFAKLLGARTVIGTIGSETKR 2024029
Query: 120 MLATSVGRADVVI 132
+A G AD VI
Sbjct: 2024028 KIALDSG-ADYVI 2023993
Score = 55.5 bits (132), Expect = 5e-06, Method: Composition-based stats.
Identities = 41/160 (25%), Positives = 70/160 (43%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G EG G V VG VS ++GKRV G G++ + A ++ +PD + D AA
Sbjct: 1020742 GYEGVGIVEDVGALVSRDLIGKRVLPLRG---EGTWQEYVKTSADFVVPIPDSIDDFTAA 1020572
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+ LTA + ++V+A G L Q++++ ++I + ++
Sbjct: 1020571 QMYINPLTAWVTCTETLNLQRNDVLLVNACGSAIGHLFAQLSQILNFQLIAVTRNSKHTD 1020392
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
+G A VID P + ++ +G DA D +G
Sbjct: 1020391 ELLQLG-AHHVIDTSTAPLYETVMTLTNGRGADAAIDSIG 1020275
Score = 52.8 bits (125), Expect = 4e-05, Method: Composition-based stats.
Identities = 45/137 (32%), Positives = 68/137 (49%), Gaps = 2/137 (1%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEV-PDGVTDAQA 59
G E +G + +G V++ G +V + G YA +T V S L+ + P VT +A
Sbjct: 175191 GVELSGEIEDIGTDVTQFKKGDQVFALTELN-LGGYAEYTCVHESGLIALKPTNVTYEEA 175015
Query: 60 AAVLCQGLTA-HYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEK 118
A + G +A H+L G V+++ A+G G Q+AK GA V IC +
Sbjct: 175014 AVIPFGGTSALHFLRKGQIK--KGQRVLIYGASGSVGTAAVQLAKYFGATVTAICSSSNF 174841
Query: 119 AMLATSVGRADVVIDYV 135
L T++G AD VIDY+
Sbjct: 174840 D-LVTALG-ADNVIDYM 174796
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 51/190 (26%), Positives = 80/190 (42%), Gaps = 26/190 (13%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYF-------------------------GGVGCTGS 35
G EG G V K+ V+ +G RV+ G G
Sbjct: 2148874 GHEGVGIVTKIADDVTSLKIGDRVSIAWMFQSCGRCEYCVTGRETFCREVKNAGYSVDGG 2149053
Query: 36 YAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTG 95
A +V A ++VP+G+ AQA+++ C G+T + + S P +V++ GG G
Sbjct: 2149054 MAEQCIVTADYAVKVPEGLDPAQASSITCAGVTTYKAIKVS-DIKPSQPIVIY-GCGGLG 2149227
Query: 96 LLVCQMAK-LRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDA 154
L Q AK + GA+VI + +K LA VG AD+ I+ ++ +V+ A
Sbjct: 2149228 NLAIQYAKNVFGAKVIAVDINDDKLALAKEVG-ADMTINPISQGPADKIVQEEFGGAYAA 2149404
Query: 155 VYDGVGQATF 164
V V + F
Sbjct: 2149405 VVTAVSKVAF 2149434
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 45/181 (24%), Positives = 75/181 (41%), Gaps = 17/181 (9%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCT-----------------GSYAAFTVVQ 43
G +GAG V ++G GVS+ +L V +G G++A + +V
Sbjct: 2584453 GSDGAGIVTEIGNGVSDNILHTEVIINPSIGWEHATEVPELPEVLGGPKDGTFAEYVIVP 2584632
Query: 44 ASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAK 103
++E P +T ++ + LTA+ + + G V++ GG AK
Sbjct: 2584633 VENVVEKPSYLTWEESGVLSLSALTAYRALFTKGRLKRGEHVLIPGIGGGVATFSMLFAK 2584812
Query: 104 LRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQAT 163
GA+V K LA G AD I + + +W ++ + VD + D +G AT
Sbjct: 2584813 AIGAKVSVTSRVENKMELAAKYG-AD--ISFHSAGNWEESLQG---EKVDLIIDSIGPAT 2584974
Query: 164 F 164
F
Sbjct: 2584975 F 2584977
Score = 36.6 bits (83), Expect = 3.1, Method: Composition-based stats.
Identities = 45/164 (27%), Positives = 61/164 (37%), Gaps = 26/164 (15%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGC-------------------------TGS 35
G E +G V+++G GV+ +G RV C G
Sbjct: 697454 GHEFSGEVIEIGEGVTSHKVGDRVVVEPIYSCGKCEACKHGHYNVCEQLVFHGLGGEGGG 697633
Query: 36 YAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTG 95
++ +TVV + +PD +T Q A V + H + S G V G G
Sbjct: 697634 FSEYTVVPEDMVHHIPDEMTYEQGALVEPAAVAVHAVRQSKLKEGEAVAVF---GCGPIG 697804
Query: 96 LLVCQMAKLRGAR-VIGICGGAEKAMLATSVGRADVVIDYVATP 138
LLV Q AK GA VI + E+ LA G DYV P
Sbjct: 697805 LLVIQAAKAAGATPVIAVELSKERQELAKLAG-----ADYVLNP 697921
>gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, complete genome
Length = 5928787
Score = 98.2 bits (243), Expect = 9e-19, Method: Composition-based stats.
Identities = 66/164 (40%), Positives = 92/164 (56%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G EGAG V VG V+ +G RVAY G G G+Y+ V+ + L+++ D V+ QAA
Sbjct: 30825 GAEGAGVVEAVGDEVTRFKVGDRVAY--GTGPLGAYSEVHVLPEANLVKLADSVSFEQAA 30652
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A++ +GLT YL+ +Y PG ++ HAAAGG G L CQ AK GA++IG EKA
Sbjct: 30651 ALMLKGLTVQYLLRQTYQVKPGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAA 30472
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
A ++G + IDY ++ K V+DGVGQ T+
Sbjct: 30471 HAKALGAWE-TIDYSHEDVAKRVLELTDGKKCPVVFDGVGQDTW 30343
Score = 62.8 bits (151), Expect = 3e-08, Method: Composition-based stats.
Identities = 53/164 (32%), Positives = 73/164 (44%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG + VG V+ G RV G GS+A V +L +P + AA
Sbjct: 342392 GGEAAGVISAVGEKVTHLKPGDRVMALTG---WGSFAEQVAVPGYNVLPIPTSMDFTTAA 342222
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A T+ + + G T++V A+GG GL ++ K GARVI AEK
Sbjct: 342221 AFSMTYGTSMHALKQRANLQAGETLLVLGASGGVGLAAVEIGKALGARVIAAASSAEKLE 342042
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
+A + G AD +I+Y T + R G D +YD VG F
Sbjct: 342041 VAKNAG-ADELINYSETSLKDEVKRLTNDNGADVIYDPVGGDLF 341913
Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 41/102 (40%), Positives = 56/102 (54%), Gaps = 1/102 (0%)
Frame = -2
Query: 60 AAVLCQGLTAHY-LVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEK 118
+A+ G+ A+ L+D P G TVV+ AAG G + Q+AKL+G RV+GI GGAEK
Sbjct: 2102928 SALGMTGMNAYLALLDVGQP-KSGDTVVISGAAGAVGSVAGQIAKLKGCRVVGIAGGAEK 2102752
Query: 119 AMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
L T D IDY + D ++ P GV+ +D VG
Sbjct: 2102751 CRLLTEELGFDAAIDY-KSEDVMDGLKRHCPDGVNVYFDNVG 2102629
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 54/181 (29%), Positives = 75/181 (41%), Gaps = 19/181 (10%)
Frame = +2
Query: 3 EGAGTVVKVGPGVSETMLGKRV--AYF----------------GGVGCTGSYAAFTVVQA 44
+GAG V VG GVSE +G V +F G G G +A
Sbjct: 1431140 DGAGVVTAVGEGVSEFAVGDSVVSTFFPEWISGEPLVEGFVTVPGDGIDGYAREQVTARA 1431319
Query: 45 SALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKL 104
++ P G T A+A+ + GLTA + G TV+V GG + Q AK+
Sbjct: 1431320 TSFTHAPLGYTHAEASTLTTAGLTAWRALMVDDALKAGDTVLVQ-GTGGVSIFALQFAKM 1431496
Query: 105 RGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRA-AAPKGVDAVYDGVGQAT 163
GA VI EK ++G AD +I+Y +W R +GVD + D G +T
Sbjct: 1431497 VGATVIATSSSDEKLERLKAMG-ADHLINYRKDSNWGETARKLTGGRGVDHIIDVGGPST 1431673
Query: 164 F 164
Sbjct: 1431674 L 1431676
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 46/162 (28%), Positives = 69/162 (42%), Gaps = 2/162 (1%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGS--YAAFTVVQASALLEVPDGVTDAQ 58
G E AG V +G GV + +G +VA F Y V+ AL PD ++ +
Sbjct: 2678635 GYEMAGVVTALGDGVDDLQVGDKVASFPAADANQHPVYGETIVLPRRALTRYPDVLSPVE 2678814
Query: 59 AAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEK 118
A+ L A++ G TV+V A+ +G Q+ K G RVI +
Sbjct: 2678815 ASVHYTPYLVAYFAYVDLARIKSGQTVLVTDASHCSGPAFVQLGKALGVRVIAATKTEDA 2678994
Query: 119 AMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
S+G AD V+ + + +GVDAV+DG+G
Sbjct: 2678995 REYLQSLG-ADKVVVTEEQDLLMAINKYTENRGVDAVFDGLG 2679117
Score = 42.7 bits (99), Expect = 0.036, Method: Composition-based stats.
Identities = 43/135 (31%), Positives = 58/135 (42%), Gaps = 1/135 (0%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRV-AYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQA 59
G + +G V+ VG V+ G + A +G GS A F V A P + QA
Sbjct: 4023131 GSDLSGVVIAVGKAVTRFKAGDAIFASIFDLG-KGSIAEFAAVPERAAALKPANLDFVQA 4023307
Query: 60 AAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKA 119
A++ GLT+ + PG V + A AGG G Q+AK GA V
Sbjct: 4023308 ASIPMVGLTSWQALKERANLQPGQKVFIPAGAGGIGTFAIQLAKHLGANV-ATTTSTGNV 4023484
Query: 120 MLATSVGRADVVIDY 134
L S+G A V+DY
Sbjct: 4023485 ELVRSLG-AHEVVDY 4023526
Score = 42.4 bits (98), Expect = 0.047, Method: Composition-based stats.
Identities = 38/126 (30%), Positives = 56/126 (44%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E +G + +VGPG S + + A G G+ A VV +L VP+G++ +AA
Sbjct: 1843027 GLECSGVIAEVGPGTSWVVGDRVCALLAG----GAMAEEVVVDGRHVLPVPEGLSLHEAA 1843194
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A+ TA + PG V++HA A G G Q+ K G V G E+
Sbjct: 1843195 AIPEVYATAWLNLFQLAGLKPGEKVLLHAGASGVGSAGIQLCKAFGNPVWVSVGSTERLA 1843374
Query: 121 LATSVG 126
+G
Sbjct: 1843375 YCVELG 1843392
Score = 34.7 bits (78), Expect = 9.6, Method: Composition-based stats.
Identities = 37/130 (28%), Positives = 52/130 (40%), Gaps = 3/130 (2%)
Frame = +3
Query: 29 GVGCTGSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCG---PGSTV 85
G G G A +++ L+ +PD T AQA A+ G TA V + G V
Sbjct: 2784789 GEGHWGGLAQKARLKSEWLIPLPDAFTPAQAMAIGTAGYTAMLSVLALEKHGLTPDHGDV 2784968
Query: 86 VVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVR 145
+V A GG G + G RVI G ++ +G A VV PLV+
Sbjct: 2784969 LVTGANGGVGSFAIAILARLGYRVIASTGRVSESEYLHQLGAAQVVDRATLLQPGRPLVK 2785148
Query: 146 AAAPKGVDAV 155
+D+V
Sbjct: 2785149 EQWAAAIDSV 2785178
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
Length = 4751080
Score = 97.8 bits (242), Expect = 9e-19, Method: Composition-based stats.
Identities = 65/164 (39%), Positives = 89/164 (54%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V VG GV+ G RVAY GG G+Y+ ++ A L+++PDG+ D AA
Sbjct: 224146 GSEAAGVVEAVGEGVAGLRPGDRVAYAGGP--LGAYSTERLIAAEHLVKLPDGIADETAA 224319
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+ QG+T YLV ++P PG TV+ HAAAGG G + Q G +VI G KA
Sbjct: 224320 CAMLQGMTVEYLVQRTFPVQPGQTVLWHAAAGGVGQIALQWLSAMGVQVIATVGSQAKAE 224499
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
+A S+G A V++ Y + +GV V+D VG+ TF
Sbjct: 224500 IARSLGAAHVIL-YREEDVAARVREITGGRGVPVVFDSVGKDTF 224628
Score = 56.2 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 45/127 (35%), Positives = 59/127 (46%), Gaps = 1/127 (0%)
Frame = -2
Query: 35 SYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGT 94
S+AA + L E P A + + GLTA+ + G + V AAAGG
Sbjct: 833763 SHAAVAAEELRVLKEYPGVSASAFLSIMGGTGLTAYVALSRIAKLQAGEDIFVSAAAGGV 833584
Query: 95 GLLVCQMAKLRGA-RVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVD 153
G + Q+A+L GA R+IG G A KA T D IDY + D + AAP+G D
Sbjct: 833583 GSAIAQLARLMGAGRLIGSTGSAAKARYLTETLDYDFAIDY-HSQDLSQALGEAAPEGFD 833407
Query: 154 AVYDGVG 160
D VG
Sbjct: 833406 IYIDNVG 833386
Score = 49.7 bits (117), Expect = 3e-04, Method: Composition-based stats.
Identities = 40/132 (30%), Positives = 61/132 (46%)
Frame = +1
Query: 34 GSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGG 93
G YA + ++ S + PD ++ +AA + +TA + + G ++HA A G
Sbjct: 2228818 GGYAEYALLDQSLAIAKPDQLSWVEAAGLPEAWMTAWFNLVVKAGLQAGERALIHAGASG 2228997
Query: 94 TGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVD 153
G+ Q+A+L GA G AEK +G A V +Y TP + V+A G D
Sbjct: 2228998 VGVAAIQLARLLGAEAFASAGSAEKLAFCRELG-ASQVFNYHETPAFGERVKAWG--GAD 2229168
Query: 154 AVYDGVGQATFA 165
V D VG + A
Sbjct: 2229169 VVLDPVGASHLA 2229204
Score = 36.6 bits (83), Expect = 2.5, Method: Composition-based stats.
Identities = 46/163 (28%), Positives = 68/163 (41%), Gaps = 8/163 (4%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G + AG V VG + G RV Y G + G+ + V + +PD + AA
Sbjct: 1768879 GWDVAGVVRAVGAKTTLFQPGDRVWYAGALQRPGANSELHAVDERIVGRMPDSLDFETAA 1768700
Query: 61 AVLCQGLTAHYL-------VDSSYPCGPGSTVVVHAAAGGTGLLVCQMAK-LRGARVIGI 112
A+ +TA L + + P G +V AAGG G ++ Q+A+ L G VI
Sbjct: 1768699 ALPLTAITAWELLFDRLQVLANGQPAGRKLMIV--GAAGGVGSIMIQLARQLTGLTVIAT 1768526
Query: 113 CGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAV 155
E +G A VID+ PL R G+++V
Sbjct: 1768525 ASRPETQAWVRELG-AHHVIDHSQ-----PLSRELKRIGIESV 1768415
>gb|AE017221.1| Thermus thermophilus HB27, complete genome
Length = 1894877
Score = 97.8 bits (242), Expect = 9e-19, Method: Composition-based stats.
Identities = 76/164 (46%), Positives = 92/164 (56%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
GEEGAG V KVG GV G RVA+ G+YA + VV A L+ VP+G+ AA
Sbjct: 1741190 GEEGAGVVEKVGEGVVGVRPGDRVAF---ANVQGAYAEYLVVPAERLVPVPEGLDPKLAA 1741360
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A L QG+T HYL+ S+YP PG V+VHA AGG G L+ Q AK GA V EK
Sbjct: 1741361 AALLQGMTVHYLLKSTYPVAPGDQVLVHAGAGGVGQLLIQWAKRLGATVYATASTEEKRG 1741540
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
L G AD + Y + V+A + GVD VYDGVG+ TF
Sbjct: 1741541 LCLQAG-ADYALPYEG---FAEAVKALSGGGVDVVYDGVGKDTF 1741660
Score = 70.1 bits (170), Expect = 2e-10, Method: Composition-based stats.
Identities = 60/166 (36%), Positives = 83/166 (50%), Gaps = 4/166 (2%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAY----FGGVGCTGSYAAFTVVQASALLEVPDGVTD 56
G + AG V KVGPGV + G V Y FG G+YA +T V A + + P ++
Sbjct: 1130824 GYDAAGVVAKVGPGVKDLKEGDEVYYTPEIFGNP--HGTYAEYTPVPAGIVAKKPKNLSF 1130651
Query: 57 AQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGA 116
A+AAA+ G TA V PG TV+V AGG G Q AK GA VI A
Sbjct: 1130650 AEAAAIPLAGGTAWEAVVRRLAVRPGETVLVMGGAGGVGSFAVQFAKAAGAYVIAT-ASA 1130474
Query: 117 EKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQA 162
E + +G AD+ +DY P +++A +GVDA ++ G++
Sbjct: 1130473 ENLPVLKELG-ADLTLDYRG-PWAEEVLKATEGQGVDAAFETAGES 1130342
Score = 68.9 bits (167), Expect = 5e-10, Method: Composition-based stats.
Identities = 62/189 (32%), Positives = 82/189 (43%), Gaps = 25/189 (13%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCT------------------------GSY 36
G +G+G V VGPGV G V G+ C G+Y
Sbjct: 85717 GADGSGVVDAVGPGVEGFAPGDEVVINPGLSCGRCERCLAGEDNLCPRYQILGEHRHGTY 85538
Query: 37 AAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGL 96
A + V+ + L P ++ +AAA+ LTA +V PG V+V AA G +
Sbjct: 85537 AEYVVLPEANLAPKPKSLSFEEAAAIPLTFLTAWQMVVDKLGVRPGDDVLVMAAGSGVSV 85358
Query: 97 LVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRA-AAPKGVDAV 155
Q+AKL GARVI G +K A ++G AD ++Y PDWP VR KG D V
Sbjct: 85357 AAIQIAKLFGARVIATAGSEDKLRRAKALG-ADETVNYTH-PDWPKEVRRLTGGKGADKV 85184
Query: 156 YDGVGQATF 164
D G F
Sbjct: 85183 VDHTGALYF 85157
Score = 39.7 bits (91), Expect = 0.32, Method: Composition-based stats.
Identities = 44/128 (34%), Positives = 60/128 (46%)
Frame = -2
Query: 34 GSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGG 93
G A V ALL +P+G++ +AAA LTA YL PG V+V AAAG
Sbjct: 293878 GGLAERVAVPKGALLPLPEGLSPEEAAAFPVSFLTA-YLALKRAQARPGEKVLVQAAAGA 293702
Query: 94 TGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVD 153
G Q+A+ G RV+ EK L ++G A+ Y P+ RA A G+D
Sbjct: 293701 LGTAAVQVARAMGLRVLAAASRPEKLALPLALG-AEEAATYAEVPE-----RAKAWGGLD 293540
Query: 154 AVYDGVGQ 161
V + G+
Sbjct: 293539 LVLEVRGK 293516
Score = 38.1 bits (87), Expect = 0.92, Method: Composition-based stats.
Identities = 49/181 (27%), Positives = 77/181 (42%), Gaps = 17/181 (9%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRV----------------AYFGGVGCTGSYAAFTVVQA 44
G + G V +VG G +LG+RV A + G G +A VV
Sbjct: 1491766 GSDIVGVVDRVGEGADPRLLGRRVVDNWIRDPEEPWNPMKARYVGSEVDGGFADHCVVPE 1491587
Query: 45 SALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKL 104
+ ++ V + A + C G TA +++ + G G+ + Q+AKL
Sbjct: 1491586 ANVVPVESPLPSVALATLACSGTTAEGMLERA----------------GVGVFLVQLAKL 1491455
Query: 105 RGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPK-GVDAVYDGVGQAT 163
R ARV+ + EK ++G ADV + + + P + AA + VDAV D VG +
Sbjct: 1491454 RKARVVAL-ASPEKHEALRALG-ADVCLPR-SPGNLPKALEAATGRPHVDAVADVVGGSL 1491284
Query: 164 F 164
F
Sbjct: 1491283 F 1491281
>gb|AE017196.1| Wolbachia endosymbiont of Drosophila melanogaster, complete genome
Length = 1267782
Score = 97.8 bits (242), Expect = 1e-18, Method: Composition-based stats.
Identities = 62/167 (37%), Positives = 90/167 (53%), Gaps = 4/167 (2%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETM-LGKRVAYFGGVGCT---GSYAAFTVVQASALLEVPDGVTD 56
G E G + K+G +S+ + +G RV Y CT G+Y ++ L+++PD ++D
Sbjct: 909690 GVEAVGVIEKLGKKISDGLKVGDRVGY-----CTAPPGAYCEKRIIHQKYLIKIPDDISD 909526
Query: 57 AQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGA 116
AAAVL +G+TAHYLV+ SY PG+ V+VH A GG G ++CQ AK + VIG
Sbjct: 909525 EVAAAVLFKGMTAHYLVNQSYKVRPGAFVLVHGANGGLGQIICQWAKDKKGVVIGSVSSD 909346
Query: 117 EKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQAT 163
EK +A G I+Y ++ + V AVYD +G AT
Sbjct: 909345 EKMKIALQSG-CTYAINYNDKDFVSKVMEITQNRRVGAVYDPIGYAT 909208
>gb|CP000903.1| Bacillus weihenstephanensis KBAB4, complete genome
Length = 5262775
Score = 97.8 bits (242), Expect = 1e-18, Method: Composition-based stats.
Identities = 68/161 (42%), Positives = 87/161 (54%), Gaps = 1/161 (0%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G EGAG V KVG V+ G +A+ S A V + + +PD ++ AA
Sbjct: 3239004 GYEGAGIVEKVGANVTTINPGDHIAF---ADVPFSNAELVAVPSEKAITLPDSISFETAA 3239174
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+VL QGLTAHYL SY G V+VHAAAGG G L+ QM KL+G +VIG+ EKA
Sbjct: 3239175 SVLLQGLTAHYLTKDSYQIKQGDIVLVHAAAGGVGQLLVQMIKLQGGKVIGLTSSKEKAQ 3239354
Query: 121 LATSVGRADVVIDYVATPDW-PPLVRAAAPKGVDAVYDGVG 160
+AT G AD V Y T W ++ GV+ VY+ VG
Sbjct: 3239355 VATLAG-ADHVFLY--TEAWHTKVLELTNGAGVNVVYESVG 3239468
Score = 62.0 bits (149), Expect = 6e-08, Method: Composition-based stats.
Identities = 49/133 (36%), Positives = 64/133 (48%), Gaps = 1/133 (0%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G + AG V VG V G+RV F GSYA + V + +PD V AA
Sbjct: 2013182 GIDAAGIVEHVGSHVKNIHPGQRVITFPQ---NGSYAEYVVANENLTFVLPDEVNFQTAA 2013012
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGA-RVIGICGGAEKA 119
A T++ L+ + G +V++HA AGG G Q+AKL GA +VIG G K
Sbjct: 2013011 ACPIVSFTSYNLLANVARIQQGESVLIHAVAGGIGTTAIQLAKLLGAKKVIGTVGSEAKR 2012832
Query: 120 MLATSVGRADVVI 132
+A G AD VI
Sbjct: 2012831 KIALDAG-ADYVI 2012796
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 42/160 (26%), Positives = 70/160 (43%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G EG G V VG GV+ ++GKRV G G++ + A ++ +PD + D AA
Sbjct: 999024 GYEGVGIVEDVGAGVTRDLIGKRVLPLRG---EGTWQEYVKTSADFVVPIPDSIDDFTAA 998854
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+ LTA + ++V+A G L Q++++ R+I + +
Sbjct: 998853 QMYINPLTAWVTCTETLNLKQNDILLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTE 998674
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
+G A+ VID P + ++ G DA D +G
Sbjct: 998673 ELLRLG-AEYVIDTSTAPLYETVMELTNGLGADAAIDSIG 998557
Score = 56.2 bits (134), Expect = 4e-06, Method: Composition-based stats.
Identities = 45/135 (33%), Positives = 70/135 (51%), Gaps = 1/135 (0%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G + AG V +VG V+ +G +V GSY+ + V+++ + ++P+ + +AA
Sbjct: 2619758 GLDVAGIVEEVGEDVNHFKIGDKVFTKPENIGKGSYSEYITVKSNLVAQMPNNLNFEEAA 2619579
Query: 61 AVLCQGLTA-HYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKA 119
++ GLTA LVD + V++HA AGG G Q+AK GA V +
Sbjct: 2619578 SIPLAGLTAWQSLVDYA-QIKENDRVLIHAGAGGVGSFAIQIAKSFGAFVATTASSKNEE 2619402
Query: 120 MLATSVGRADVVIDY 134
L S+G AD+VIDY
Sbjct: 2619401 FL-KSLG-ADLVIDY 2619363
Score = 52.4 bits (124), Expect = 5e-05, Method: Composition-based stats.
Identities = 50/163 (30%), Positives = 76/163 (46%), Gaps = 2/163 (1%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEV-PDGVTDAQA 59
G E +G + +VG V++ G + + G YA +T V S L+ + P VT +A
Sbjct: 176348 GVELSGEIEEVGTDVTQFKKGDPIFALTELN-LGGYAEYTCVHESGLITLKPTNVTYEEA 176172
Query: 60 AAVLCQGLTA-HYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEK 118
A + G +A H+L G V+++ A+G G Q+AK GA V +C +
Sbjct: 176171 AVIPFGGTSALHFLRKGRIK--KGQQVLIYGASGSVGTAAVQLAKYFGATVTAVCSNSNF 175998
Query: 119 AMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQ 161
L S+G AD VIDY D+ K D ++D VG+
Sbjct: 175997 E-LVQSLG-ADKVIDYTKE-DF-----TKQGKCYDIIFDAVGK 175893
Score = 49.3 bits (116), Expect = 4e-04, Method: Composition-based stats.
Identities = 52/190 (27%), Positives = 81/190 (42%), Gaps = 26/190 (13%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYF-------------------------GGVGCTGS 35
G EG G V K+ V+ +G RV+ G G
Sbjct: 2149341 GHEGVGIVTKIADDVTSLKIGDRVSIAWMFQSCGRCEYCVTGRETFCREVKNAGYSVDGG 2149520
Query: 36 YAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTG 95
A +V A ++VP+G+ AQA+++ C G+T + + S PG +V++ GG G
Sbjct: 2149521 MAEQCIVTADYAVKVPEGLDPAQASSITCAGVTTYKAIKVS-DIKPGQPIVIY-GCGGLG 2149694
Query: 96 LLVCQMAK-LRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDA 154
L Q AK + GA+VI + +K LA VG AD+ I+ ++ +V+ A
Sbjct: 2149695 NLAIQYAKNVFGAKVIAVDINDDKLALAKEVG-ADMTINPISQGPADKIVQEEFGGAYAA 2149871
Query: 155 VYDGVGQATF 164
V V + F
Sbjct: 2149872 VVTAVSKVAF 2149901
Score = 43.5 bits (101), Expect = 0.021, Method: Composition-based stats.
Identities = 42/181 (23%), Positives = 73/181 (40%), Gaps = 17/181 (9%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVG-----------------CTGSYAAFTVVQ 43
G +G+G V+++G GVS L V +G G++A + +V
Sbjct: 2564440 GSDGSGIVIELGEGVSNISLHTEVIINPSIGWNNTHEIPELPEVLGGPTDGTFAEYVIVP 2564261
Query: 44 ASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAK 103
A ++E P +T ++ + LTA+ + + P V++ GG AK
Sbjct: 2564260 AENVVEKPSYLTWEESGVLSLSALTAYRALFTKGRLKPEEHVLIPGIGGGVATYAMLFAK 2564081
Query: 104 LRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQAT 163
GA+V + E A AD + ++ +W + + VD + D +G AT
Sbjct: 2564080 AIGAKV-SVTSRIEGKRKAAEKYGAD--FSFNSSGNWEECLHG---EKVDLIIDSIGPAT 2563919
Query: 164 F 164
F
Sbjct: 2563918 F 2563916
Score = 36.6 bits (83), Expect = 2.5, Method: Composition-based stats.
Identities = 46/164 (28%), Positives = 61/164 (37%), Gaps = 26/164 (15%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGC-------------------------TGS 35
G E +G VV++G GV+ +G RV C G
Sbjct: 678942 GHEFSGEVVEIGEGVTSHKVGDRVVVEPIYSCGKCEACKHGHYNVCEQLVFHGLGGEGGG 679121
Query: 36 YAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTG 95
++ +TVV + +PD +T Q A V + H + S G V G G
Sbjct: 679122 FSEYTVVPEDMVHHIPDEMTYEQGALVEPAAVAVHAVRQSKLKEGEAVAVF---GCGPIG 679292
Query: 96 LLVCQMAKLRGAR-VIGICGGAEKAMLATSVGRADVVIDYVATP 138
LLV Q AK GA VI + E+ LA G DYV P
Sbjct: 679293 LLVIQAAKAAGATPVIAVELSKERQELAKLAG-----ADYVLNP 679409
>gb|CP000094.1| Pseudomonas fluorescens Pf0-1, complete genome
Length = 6438405
Score = 97.8 bits (242), Expect = 1e-18, Method: Composition-based stats.
Identities = 68/165 (41%), Positives = 91/165 (55%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G EGAG V+ GP V+E +G RVA+ GSYA + S L+ +PD + + AA
Sbjct: 2584948 GAEGAGVVLASGPQVTEFAVGARVAWHY---VPGSYAEQVIAPVSQLVPLPDDIDFSTAA 2585118
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+++ QGLTA LVD + PG VHAAAGG GL++ QM KLRG +VIG A+K
Sbjct: 2585119 SLMMQGLTASNLVDKVHAIQPGDVAFVHAAAGGVGLMLTQMIKLRGGKVIGRVSHADKVE 2585298
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATFA 165
+ G AD V+ A ++R + V+ VYDG G FA
Sbjct: 2585299 AVLAAG-ADYVVIGRAQNIAGQVMRLTEGQRVNVVYDGTGAEGFA 2585430
Score = 95.9 bits (237), Expect = 4e-18, Method: Composition-based stats.
Identities = 66/164 (40%), Positives = 90/164 (54%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G EGAG V VG V+ +G RVAY G G G+Y+ V+ + L+ +PD ++ AA
Sbjct: 23830 GAEGAGIVEAVGSEVTRFKVGDRVAY--GSGPLGAYSDVHVLPEANLVHLPDAISFETAA 23657
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
V+ +GLT YL+ +Y G T++ HAAAGG GLL CQ AK G ++IG KA
Sbjct: 23656 GVMLKGLTVQYLLRQTYELKGGETILFHAAAGGVGLLACQWAKALGVKLIGTVSSKAKAD 23477
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
LA + G + IDY ++ K V VYDGVG+ T+
Sbjct: 23476 LAKAHGAWE-TIDYSHENVAQRVLELTDGKKVPVVYDGVGKDTW 23348
Score = 67.0 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 56/164 (34%), Positives = 77/164 (46%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V +VG VS +G RV G GS+A V +L +P + AA
Sbjct: 6111716 GGEAAGVVSEVGEKVSHLKVGDRVMALTG---WGSFAEQVAVPGYNVLPIPPSMDFNTAA 6111886
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A T+ + + PG T++V A+GG GL ++ K GARVI AEK
Sbjct: 6111887 AFSMTYGTSMHALKQRGNLQPGETLLVLGASGGVGLAAVEIGKAMGARVIAAASSAEKLA 6112066
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
+A + G AD +I+Y T + R +G D +YD VG F
Sbjct: 6112067 VAKAAG-ADELINYSETSLKDEIKRLTDGQGADVIYDPVGGDLF 6112195
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 49/138 (35%), Positives = 75/138 (54%), Gaps = 3/138 (2%)
Frame = +2
Query: 30 VGCTGSYAAFTVVQASALLEVPDGV-TDAQAAAVL-CQGLTAHY-LVDSSYPCGPGSTVV 86
VG TG + + ++ ++ +P G+ + + A VL G+TA+ L+D P G T+V
Sbjct: 2020409 VGATG-WQSHSISDGRNIIPIPSGLPSPSMALGVLGMPGMTAYMGLMDIGQP-KEGETLV 2020582
Query: 87 VHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRA 146
V AA+G G +V Q+AK++G R +G+ GGAEK D ID+ A PD+ +
Sbjct: 2020583 VAAASGAVGSVVGQVAKIKGLRAVGVAGGAEKCKYVVEELGFDACIDHKA-PDFAEQLAK 2020759
Query: 147 AAPKGVDAVYDGVGQATF 164
A P G+D Y+ VG F
Sbjct: 2020760 ACPDGIDIYYENVGGHVF 2020813
Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 41/102 (40%), Positives = 57/102 (55%), Gaps = 1/102 (0%)
Frame = +1
Query: 60 AAVLCQGLTAHY-LVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEK 118
+A+ G+TA++ L+D P G TVV+ AAG G + Q+AK++G RVIGI GGA+K
Sbjct: 4736338 SALGMTGMTAYFALLDVGAP-KAGDTVVLSGAAGAVGSIAGQIAKIKGCRVIGIAGGADK 4736514
Query: 119 AMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
D IDY + D ++ PKGVD +D VG
Sbjct: 4736515 CKFLVDELGFDGAIDY-KSEDVLAGLKRECPKGVDVYFDNVG 4736637
Score = 55.8 bits (133), Expect = 5e-06, Method: Composition-based stats.
Identities = 54/148 (36%), Positives = 75/148 (50%), Gaps = 3/148 (2%)
Frame = -1
Query: 21 GKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCG 80
G RVAY + GS+A + ++ A+ +L VP + DA AA++ C GLTA V+ P
Sbjct: 2790969 GSRVAYHQSLANDGSFAEYCLLDAATVLSVPAALDDAAAASLPCPGLTAWQAVE-KVPAN 2790793
Query: 81 PGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGA--EKAMLATSVGRADVVIDYVATP 138
+ V+V A G GLL+ Q+A RG RV GA EK +VG V DY
Sbjct: 2790792 GAADVLVIGAGGAVGLLLVQLAVQRGWRVWATASGAHHEKLKALGAVG----VFDYREL- 2790628
Query: 139 DWPPLVRAA-APKGVDAVYDGVGQATFA 165
DW + A+ + + AV+D V A A
Sbjct: 2790627 DWQSALAASLGERRLHAVFDTVSGAHAA 2790544
Score = 53.1 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 44/134 (32%), Positives = 65/134 (48%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G + AG VV+VGP V+ G V G++A V +A+ P AQAA
Sbjct: 2832031 GNDLAGVVVEVGPQVTRFKPGDEVYARPPEARIGTFAQLIAVNENAVALKPANTDMAQAA 2831852
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
++ LTA ++ + G V++HA +GG G + Q+AK GA V A
Sbjct: 2831851 SLPLVALTAWQVLVETARLQKGQKVLIHAGSGGVGTVAIQLAKHLGAFVATTTSTANVEW 2831672
Query: 121 LATSVGRADVVIDY 134
+ ++G AD+VIDY
Sbjct: 2831671 V-KALG-ADLVIDY 2831636
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 55/169 (32%), Positives = 81/169 (47%), Gaps = 4/169 (2%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAY----FGGVGCTGSYAAFTVVQASALLEVPDGVTD 56
G + +G V VGPGV+ G V Y F G GSYA + V AS + + P ++
Sbjct: 3813893 GHDVSGVVEAVGPGVTAFAPGDEVWYTPQIFDG---PGSYAEYHVASASIIGKKPSSLSH 3813723
Query: 57 AQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGA 116
+AA++ G TA + G ++++H AGG G + Q+AK GA+V A
Sbjct: 3813722 LEAASLSLVGGTAWEALIVRAALRVGESILIHGGAGGVGHVAIQLAKAMGAKVFTTAREA 3813543
Query: 117 EKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATFA 165
A +G ADV+IDY ++R GVD V+D +G T +
Sbjct: 3813542 -NAEFVRRMG-ADVIIDYEKDDYVDAILRETNGLGVDVVFDTIGGDTLS 3813402
Score = 49.3 bits (116), Expect = 4e-04, Method: Composition-based stats.
Identities = 47/165 (28%), Positives = 71/165 (43%), Gaps = 5/165 (3%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTG--SYAAFTVVQASALLEVPDGVTDAQ 58
G E AG V +G GV + +G +VA F Y V+ +AL PD ++ +
Sbjct: 3063948 GHEMAGVVTAIGDGVEDLAVGDKVASFPAESPNDYPVYGELIVLPRTALTRYPDVLSPIE 3064127
Query: 59 AAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEK 118
A+ L A++ PG +V A+ G Q+ K G RVI AE+
Sbjct: 3064128 ASVHYTPLLIAYFGYVDLARVKPGQFALVTDASHCAGPSFVQLGKALGVRVIAATKTAEE 3064307
Query: 119 AMLATSVGRADVVIDYVATPDWPPLVR---AAAPKGVDAVYDGVG 160
S+G V++ T + L+R +GVD V+DG+G
Sbjct: 3064308 REYLLSLGAEKVIV----TEEEDLLMRINKITDNRGVDVVFDGLG 3064430
Score = 44.7 bits (104), Expect = 0.011, Method: Composition-based stats.
Identities = 53/165 (32%), Positives = 74/165 (44%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V++ G V+ G RV GV G+YA + + +P + AA
Sbjct: 3233925 GLEIAGEVIETGSEVTGYAAGDRVM---GVVGGGAYAELARIDYRMAMPIPAQLDYVHAA 3234095
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A+ +TAH + G +V++HAAAGG G Q+A GA V G+ K
Sbjct: 3234096 AIPEVFVTAHEAMMHLARLKSGDSVLIHAAAGGVGSAAVQLAYATGATVYATAEGS-KLS 3234272
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATFA 165
+G ADV IDY + +GVD V D +G+ FA
Sbjct: 3234273 RVEHLG-ADVAIDYKTHDFAQVIADKTEGRGVDVVIDFIGEPYFA 3234404
Score = 42.4 bits (98), Expect = 0.049, Method: Composition-based stats.
Identities = 43/160 (26%), Positives = 64/160 (40%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG VV +G GVS +G RV + G YA + V A L +PDG+ QAA
Sbjct: 2227066 GLEVAGEVVAIGSGVSTFAVGDRVC---ALTNGGGYAEYCTVPAGQTLPIPDGLDWIQAA 2226896
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A+ T + G ++H G G + + G G A+K
Sbjct: 2226895 AIPETFFTVWANLFGLGGASRGQRALIHGGTSGIGTTALMLCREFGIEAFATAGSADKCA 2226716
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
++G I+Y + A +GV+ + D +G
Sbjct: 2226715 AIRNLGGD--AINYREQEFAAVIAEKTASQGVNVILDIMG 2226602
Score = 40.0 bits (92), Expect = 0.24, Method: Composition-based stats.
Identities = 39/126 (30%), Positives = 54/126 (42%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E +G + +VG G S + + A G G A VV +L VP+GV+ +AA
Sbjct: 1877055 GLECSGVISEVGAGSSWQVGDRVCALLAG----GGMAQEVVVDGRHVLPVPEGVSLIEAA 1877222
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A+ T V PG V++HA A G G Q+ K G G AE+
Sbjct: 1877223 ALPEVYATVWLNVFQLAALKPGEKVLLHAGASGIGSAAIQLCKAFGNPCWVSVGSAERLA 1877402
Query: 121 LATSVG 126
S+G
Sbjct: 1877403 YCESLG 1877420
Score = 38.5 bits (88), Expect = 0.66, Method: Composition-based stats.
Identities = 50/166 (30%), Positives = 75/166 (45%), Gaps = 2/166 (1%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRV-AYFGGVG-CTGSYAAFTVVQASALLEVPDGVTDAQ 58
G + AG + VG GV + + G V A G+G GS A F VV A L P + +
Sbjct: 4426550 GLDLAGVIEAVGEGVQDWVPGDEVYALATGIGGAQGSLAEFAVVDARLLARKPLNLNQRE 4426371
Query: 59 AAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEK 118
AA++ +TA + G V++H AGG G + Q+A+ GA V ++
Sbjct: 4426370 AASLPLILITAWEGLVDRARVSAGQKVLIHGGAGGVGHVAVQLARAFGADVYATGSVRQR 4426191
Query: 119 AMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
+++ G IDY+ + + A +G D VYD VG T
Sbjct: 4426190 SIIE---GYGATFIDYLESSVEEYVAEFTAGEGFDIVYDTVGGETL 4426062
Score = 38.1 bits (87), Expect = 0.93, Method: Composition-based stats.
Identities = 38/135 (28%), Positives = 57/135 (42%), Gaps = 4/135 (2%)
Frame = -3
Query: 34 GSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGG 93
G+Y V A ++ P ++ QAAA Q +TA + V+V AA+
Sbjct: 2651128 GTYGELANVPAHLTVKHPQNLSFEQAAASWMQYVTAWGALVEQAKLHKDDFVIVTAASSS 2650949
Query: 94 TGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVI----DYVATPDWPPLVRAAAP 149
GL Q+AK+ GA I + K + G A V++ D VA ++
Sbjct: 2650948 VGLAAFQIAKMVGATSIAVTRTRAKKQALLNAGAAHVIVSDEEDMVAA-----VMALTDG 2650784
Query: 150 KGVDAVYDGVGQATF 164
KG V+D VG +F
Sbjct: 2650783 KGARVVFDPVGGPSF 2650739
>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome
Length = 1849742
Score = 97.8 bits (242), Expect = 1e-18, Method: Composition-based stats.
Identities = 76/164 (46%), Positives = 92/164 (56%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
GEEGAG V KVG GV G RVA+ G+YA + VV A L+ VP+G+ AA
Sbjct: 148609 GEEGAGVVEKVGEGVVGVRPGDRVAF---ANVQGAYAEYLVVPAERLVPVPEGLDPKLAA 148439
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A L QG+T HYL+ S+YP PG V+VHA AGG G L+ Q AK GA V EK
Sbjct: 148438 AALLQGMTVHYLLKSTYPVAPGDQVLVHAGAGGVGQLLIQWAKRLGATVYATASTEEKRG 148259
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
L G AD + Y + V+A + GVD VYDGVG+ TF
Sbjct: 148258 LCLQAG-ADYALPYEG---FAEAVKALSGGGVDVVYDGVGKDTF 148139
Score = 69.7 bits (169), Expect = 3e-10, Method: Composition-based stats.
Identities = 60/166 (36%), Positives = 83/166 (50%), Gaps = 4/166 (2%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAY----FGGVGCTGSYAAFTVVQASALLEVPDGVTD 56
G + AG V KVGPGV + G V Y FG G+YA +T V A + + P ++
Sbjct: 1453736 GYDAAGVVAKVGPGVKDLKEGDEVYYTPEIFGNP--HGTYAEYTPVPAGIVAKKPKNLSF 1453563
Query: 57 AQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGA 116
A+AAA+ G TA V PG TV+V AGG G Q AK GA VI A
Sbjct: 1453562 AEAAAIPLAGGTAWEAVVRRLAVRPGETVLVMGGAGGVGSFAVQFAKAAGAYVIAT-ASA 1453386
Query: 117 EKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQA 162
E + +G AD+ +DY P +++A +GVDA ++ G++
Sbjct: 1453385 ENLPVLKELG-ADLALDYRG-PWAEEVLKATEGQGVDAAFETAGES 1453254
Score = 69.3 bits (168), Expect = 4e-10, Method: Composition-based stats.
Identities = 62/189 (32%), Positives = 82/189 (43%), Gaps = 25/189 (13%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCT------------------------GSY 36
G +G+G V VGPGV G V G+ C G+Y
Sbjct: 436039 GADGSGVVDAVGPGVEGFAPGDEVVINPGLSCGRCERCLAGEDNLCPRYQILGEHRHGTY 435860
Query: 37 AAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGL 96
A + V+ + L P ++ +AAA+ LTA +V PG V+V AA G +
Sbjct: 435859 AEYVVLPEANLAPKPKNLSFEEAAAIPLTFLTAWQMVVDKLGVRPGDDVLVMAAGSGVSV 435680
Query: 97 LVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRA-AAPKGVDAV 155
Q+AKL GARVI G +K A ++G AD ++Y PDWP VR KG D V
Sbjct: 435679 AAIQIAKLFGARVIATAGSEDKLRRAKALG-ADETVNYTH-PDWPKEVRRLTGGKGADKV 435506
Query: 156 YDGVGQATF 164
D G F
Sbjct: 435505 VDHTGALYF 435479
Score = 39.7 bits (91), Expect = 0.33, Method: Composition-based stats.
Identities = 44/128 (34%), Positives = 60/128 (46%)
Frame = -2
Query: 34 GSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGG 93
G A V ALL +P+G++ +AAA LTA YL PG V+V AAAG
Sbjct: 631717 GGLAERVAVPKGALLPLPEGLSPEEAAAFPVSFLTA-YLALKRAQARPGEKVLVQAAAGA 631541
Query: 94 TGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVD 153
G Q+A+ G RV+ EK L ++G A+ Y P+ RA A G+D
Sbjct: 631540 LGTAAVQVARAMGLRVLAAASRPEKLALPLALG-AEEAATYAEVPE-----RAKAWGGLD 631379
Query: 154 AVYDGVGQ 161
V + G+
Sbjct: 631378 LVLEVRGK 631355
Score = 39.3 bits (90), Expect = 0.40, Method: Composition-based stats.
Identities = 51/183 (27%), Positives = 76/183 (41%), Gaps = 19/183 (10%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRV-----------------AYFGGVGCTGSYAAFTVVQ 43
G + G V +VG G +LG+RV A + G G +A VV
Sbjct: 1815501 GSDIVGVVDRVGEGADPRLLGRRVVVDNWIRDPEEPWNPMKARYVGSEVDGGFADHCVVP 1815322
Query: 44 ASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAK 103
+ ++ V + A + C G TA +++ + G G+ + Q+AK
Sbjct: 1815321 EANVVPVESPLPSVALATLACSGTTAEGMLERA----------------GVGVFLVQLAK 1815190
Query: 104 LRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAP--KGVDAVYDGVGQ 161
LR ARV+ + EK ++G ADV + +P P AAP VDAV D VG
Sbjct: 1815189 LRKARVVAL-ASPEKHEALRALG-ADVCLP--RSPGNLPKALEAAPGRPHVDAVADVVGG 1815022
Query: 162 ATF 164
+ F
Sbjct: 1815021 SLF 1815013
>gb|CP000744.1| Pseudomonas aeruginosa PA7, complete genome
Length = 6588339
Score = 97.4 bits (241), Expect = 1e-18, Method: Composition-based stats.
Identities = 63/164 (38%), Positives = 86/164 (52%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G EGAG V VG V+ +G RVAY G G+Y+ V+ L+ +P+ + QAA
Sbjct: 25239 GSEGAGEVEAVGSAVTRFQVGDRVAY--ATGPLGAYSELHVLAEDNLVRLPEAIDFEQAA 25066
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A++ +GLT YL+ +Y G T++ HAAAGG GL CQ AK G ++IG EKA
Sbjct: 25065 AMMLKGLTTQYLLRQTYELQSGETILFHAAAGGVGLFACQWAKALGVKLIGTVSSPEKAR 24886
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
LA G + IDY ++ K VYD VG+ T+
Sbjct: 24885 LARQHGAWE-TIDYSHENVAKRVLELTDGKKCPVVYDSVGKDTW 24757
Score = 63.2 bits (152), Expect = 3e-08, Method: Composition-based stats.
Identities = 53/164 (32%), Positives = 77/164 (46%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V VG V+ G +V G GS+A V A ++ +P+G+ A AA
Sbjct: 6173974 GGEAAGVVAAVGEKVTHVQPGDQVMALTG---WGSFAEQVKVPAYNVMPIPEGMDFASAA 6174144
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A T+ + + PG T++V A+GG GL ++ K GARVI +K
Sbjct: 6174145 AFGMTYGTSMHALKQRANLQPGETLLVLGASGGVGLAAVEIGKAMGARVIAAASTPDKLA 6174324
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
+A + G AD +++Y L +GVD +YD VG F
Sbjct: 6174325 VAKAAG-ADELVNYSEGNLREQLKALTGGQGVDVIYDPVGGELF 6174453
Score = 59.7 bits (143), Expect = 3e-07, Method: Composition-based stats.
Identities = 40/102 (39%), Positives = 56/102 (54%), Gaps = 1/102 (0%)
Frame = +3
Query: 60 AAVLCQGLTAHY-LVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEK 118
+A+ G+TA++ L+D P G TVV+ AAG G + Q+A+L+G RV+GI GGAEK
Sbjct: 3754353 SALGMTGMTAYFALLDVGQP-RSGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEK 3754529
Query: 119 AMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
D IDY D ++ PKG+D +D VG
Sbjct: 3754530 CRFLVEELGFDGAIDY-KNEDLAAGLKRECPKGIDVFFDNVG 3754652
Score = 55.1 bits (131), Expect = 7e-06, Method: Composition-based stats.
Identities = 40/100 (40%), Positives = 54/100 (54%), Gaps = 1/100 (1%)
Frame = -1
Query: 66 GLTAHY-LVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATS 124
G TA+ L+D P G T+VV AA G G V Q+ KL+G VIG+ GGA+K A
Sbjct: 3216384 GFTAYMGLLDIGQP-RTGETLVVAAATGPVGATVGQIGKLKGCTVIGVAGGAQKCRHAVE 3216208
Query: 125 VGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
V D +D+ A D+ + A P+G+D Y+ VG F
Sbjct: 3216207 VLGFDACLDHHAA-DFAERLAEACPQGIDIYYENVGGKVF 3216091
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 52/149 (34%), Positives = 70/149 (46%), Gaps = 4/149 (2%)
Frame = -3
Query: 20 LGKRVAY-FGGVGCT--GSYAAFTVVQASALLEVPDGVTDAQAAAVLCQG-LTAHYLVDS 75
+G+RVA GG+ + GSYA V S +L +PD + A L Q LT +D
Sbjct: 931573 VGQRVATAMGGLQFSRNGSYAEEVTVLRSNVLALPDTYLSWEELAALPQAYLTIWGALDR 931394
Query: 76 SYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYV 135
S PG T++V A GL AK RG RV+ AE +G AD+V +V
Sbjct: 931393 SLAIQPGQTLLVRGATSSVGLAALTYAKARGLRVLASTRSAENTERLRQLG-ADLV--FV 931223
Query: 136 ATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
+ + AA P+GVDA + VG T
Sbjct: 931222 DNGELSASILAALPEGVDAALEVVGAPTL 931136
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 36/110 (32%), Positives = 56/110 (50%), Gaps = 5/110 (4%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G + AG V +VGP V++ LG V Y G + G+ A F +V A + P ++ A+AA
Sbjct: 133619 GWDAAGIVREVGPDVTQFELGDEVYYAGSITRPGTNAEFHLVDARIVGHKPASLSWAEAA 133440
Query: 61 AVLCQGLTAHYL----VDSSYPC-GPGSTVVVHAAAGGTGLLVCQMAKLR 105
A+ LTA +D + P G +++ AGG G + Q+A+ R
Sbjct: 133439 ALPLTTLTAWEAMFDRLDVAKPVPGAAEAILIIGGAGGVGSIAVQIARQR 133290
Score = 39.7 bits (91), Expect = 0.31, Method: Composition-based stats.
Identities = 41/132 (31%), Positives = 58/132 (43%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E +G V +VG G + + + A G G A VV A +L VP G++ A+AA
Sbjct: 1908464 GLECSGVVSEVGAGSTWQVGDRVCALLAG----GGMAEEVVVDARHVLPVPAGLSLAEAA 1908631
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+ TA + PG V++HA A G G Q+ K G G AE+
Sbjct: 1908632 GIPEVYATAWLNLFQLAALQPGEKVLLHAGASGVGSAGIQLCKAFGNPCWVSVGSAERLA 1908811
Query: 121 LATSVGRADVVI 132
S+G A V+
Sbjct: 1908812 YCESLGAAGGVL 1908847
Score = 34.7 bits (78), Expect = 9.2, Method: Composition-based stats.
Identities = 34/127 (26%), Positives = 50/127 (39%), Gaps = 17/127 (13%)
Frame = +3
Query: 29 GVGCTGSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVV- 87
G+ G Y+ VV +L +P G+ AA +LC G+T+ Y + GPGS V V
Sbjct: 3054882 GLPTFGGYSERIVVSERFVLRIPRGLDPKAAAPLLCAGITS-YSPLRHWKVGPGSRVAVV 3055058
Query: 88 -------------HAAAGGTGLLVCQMAKLRGARVIG---ICGGAEKAMLATSVGRADVV 131
A L K AR +G + + +A GR D++
Sbjct: 3055059 GLGGLGHMGLKFARALGAEVALFTRSPGKEEEARRLGADQVILSTDPQRMAAVAGRFDLI 3055238
Query: 132 IDYVATP 138
+D V P
Sbjct: 3055239 LDTVPHP 3055259
>gb|CP000910.1| Renibacterium salmoninarum ATCC 33209, complete genome
Length = 3155250
Score = 97.4 bits (241), Expect = 1e-18, Method: Composition-based stats.
Identities = 71/165 (43%), Positives = 93/165 (56%), Gaps = 1/165 (0%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V +G GV+ +G VA G SYA +T+ A+ L VP G+ AA
Sbjct: 648101 GSESAGVVAALGEGVTNFAVGDHVACTEG---AESYAEYTLFDAAKALPVPAGIDLDTAA 647931
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A+ QG+TAHYL++ ++ P TV+VHA AGG GLL+ Q+ K +GA VI EK
Sbjct: 647930 ALPLQGITAHYLIN*TFAVQPSHTVLVHAGAGGVGLLLIQLLKAKGATVISTVSNDEKEA 647751
Query: 121 LATSVGRADVVIDYVATPDWPPLVRA-AAPKGVDAVYDGVGQATF 164
LA G AD V+ Y D+ VR +GVD V+DGVG+ TF
Sbjct: 647750 LAREAG-ADQVLRY---EDFSEKVRELTGGRGVDVVFDGVGKDTF 647628
Score = 52.0 bits (123), Expect = 7e-05, Method: Composition-based stats.
Identities = 62/165 (37%), Positives = 84/165 (50%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G + AG V +VG GVSE +G V + A F VV S++L VP G++ A
Sbjct: 2296815 GNDLAGVVDQVGEGVSEFAVGYEVF---AAARNEAIADFAVVPVSSVLPVPAGLSLEIAG 2296645
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
++ G TA LV+S G TV+V AA+GG G++ Q+AK +GA VIG A A
Sbjct: 2296644 SLWIAGRTAWALVES-LDLGEQDTVLVSAASGGVGVIAAQLAKRKGATVIGTASEANHAY 2296468
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATFA 165
L G V + Y +RAAAP+G+ V D G AT +
Sbjct: 2296467 LQ---GLGVVPVSY--GDGQADRIRAAAPQGITGVIDAQGAATIS 2296348
Score = 43.1 bits (100), Expect = 0.029, Method: Composition-based stats.
Identities = 48/161 (29%), Positives = 71/161 (44%), Gaps = 17/161 (10%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G + AG V ++G GV +G V G T +YA F V+ A A +P+G+ +AA
Sbjct: 1594244 GIDAAGVVDQIGEGVEGYKVGDHVFGEG----TNTYAEFAVLSAWA--PMPEGLAFEEAA 1594405
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
TA ++ G T++V A+GG G V Q+A+ RG +VIG G A +
Sbjct: 1594406 GYASVVETALRII-REVGVQAGQTLLVSGASGGVGSAVLQIARDRGIKVIGTAGAANQDY 1594582
Query: 121 LAT-----------------SVGRADVVIDYVATPDWPPLV 144
L + +GR D +D + P LV
Sbjct: 1594583 LRSLGALGATYGAGWVERVQQLGRVDAALDLAGSGVLPELV 1594705
Score = 42.0 bits (97), Expect = 0.066, Method: Composition-based stats.
Identities = 46/134 (34%), Positives = 64/134 (47%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E +G + + G G + G+ V G+ G YA V A ++ VPDGV AA
Sbjct: 517721 GLEVSGRIAQSGHGFTR---GQEVV---GLLAGGGYAEQIAVPAGQVIPVPDGVELVDAA 517882
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+ T + V + G T++VH AGG G + Q+ K GARVI G AEK
Sbjct: 517883 GLPEVAATVYSNVVMAAGLSAGETLLVHGGAGGIGAMAIQLGKAWGARVIATAGSAEKCA 518062
Query: 121 LATSVGRADVVIDY 134
++G AD I+Y
Sbjct: 518063 TVLALG-ADEAINY 518101
Score = 37.7 bits (86), Expect = 1.2, Method: Composition-based stats.
Identities = 36/97 (37%), Positives = 44/97 (45%), Gaps = 2/97 (2%)
Frame = +3
Query: 66 GLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAK-LRGARVIGICGGAEKAMLATS 124
GLTA+ + G V V AAG G LV ++AK L ARVIG G AEK
Sbjct: 261225 GLTAYIGLTKIAESKAGDVVFVSGAAGAVGSLVGKIAKQLGAARVIGSAGSAEKVAQLLE 261404
Query: 125 VGRADVVIDYVATPDWPPLVRAAAP-KGVDAVYDGVG 160
+G D +Y P L A G+D +D VG
Sbjct: 261405 LG-FDAAFNYNDGPVKDQLKAALGDFDGIDVYFDNVG 261512
Score = 36.2 bits (82), Expect = 3.8, Method: Composition-based stats.
Identities = 36/105 (34%), Positives = 50/105 (47%)
Frame = +1
Query: 28 GGVGCTGSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVV 87
GGV G YA+ VV + ++ VP G+ A AA +LC G+T Y + G TV V
Sbjct: 1200526 GGVITQGGYASSVVVDENYVVRVPAGLDKAAAAPLLCAGITT-YSPLRYFGVEEGDTVGV 1200702
Query: 88 HAAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVI 132
G + V ++AK GA V KA A +G +VV+
Sbjct: 1200703 VGLGGLGHMAV-KIAKAMGAEVTVFTTSPAKAEAAHELGADNVVV 1200834
Score = 35.0 bits (79), Expect = 7.1, Method: Composition-based stats.
Identities = 32/90 (35%), Positives = 45/90 (50%)
Frame = -2
Query: 45 SALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKL 104
S+LL PD ++ AAA+ +TA + G V++ A+GG G Q+AK
Sbjct: 2715275 SSLLLKPDRLSFEAAAAIPTSAVTAWKGLHDVGGVVQGQQVLIIGASGGVGSFAIQIAKA 2715096
Query: 105 RGARVIGICGGAEKAMLATSVGRADVVIDY 134
GA V +C G L S+G AD V+DY
Sbjct: 2715095 AGAEVTAVC-GPHGLELVRSLG-ADHVVDY 2715012
>emb|CU207211.1| Herminiimonas arsenicoxydans chromosome, complete sequence
Length = 3424307
Score = 97.4 bits (241), Expect = 1e-18, Method: Composition-based stats.
Identities = 66/164 (40%), Positives = 88/164 (53%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G EGAG V VG GV+ G RVAY GG G+YA V+ A L+++P + A
Sbjct: 568815 GMEGAGVVAAVGEGVTHVKPGDRVAYAGGP--PGAYAESRVLPAKVLVKLPASIDFETGA 568988
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A++ QGLTA YL+ ++ G T++ HAAAGG GL+ CQ A+ G +IG G EKA
Sbjct: 568989 AMMLQGLTAQYLLRRTFRLQGGETILFHAAAGGVGLIACQWARALGVTMIGTVGSDEKAA 569168
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
LA + G I+Y + GV VYD +G+ TF
Sbjct: 569169 LAKAHGCTH-TINYNTENFVERVKEITHGAGVPVVYDSIGKDTF 569297
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
Length = 4829781
Score = 97.4 bits (241), Expect = 2e-18, Method: Composition-based stats.
Identities = 76/166 (45%), Positives = 90/166 (54%), Gaps = 2/166 (1%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G+E GTV G GV +G RV TG YA + AS VPDGV AA
Sbjct: 1241019 GQELCGTVAAAGDGVDGFNVGDRVV---SAAATGGYAEYATAPASLTAHVPDGVAADVAA 1240849
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+ L +GLTAHYL+ S YP G TV+VHA AGG GL++ Q A L GARVI EKA
Sbjct: 1240848 SALLKGLTAHYLLKSVYPVQAGDTVLVHAGAGGVGLILTQWAHLLGARVITTVSTPEKAR 1240669
Query: 121 LATSVGRADVVIDYVATPD-WPPLVRAAAP-KGVDAVYDGVGQATF 164
+ G AD V+ Y D + +RA GV AVYDGVG +TF
Sbjct: 1240668 RSAQAG-ADEVLSYPDDADEFGSRIRALTDGAGVAAVYDGVGASTF 1240534
Score = 65.5 bits (158), Expect = 6e-09, Method: Composition-based stats.
Identities = 60/160 (37%), Positives = 77/160 (48%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G + AG V VGPGV+E +G V F S+A T V L+ P ++ A
Sbjct: 3919763 GSDLAGVVTAVGPGVTEFAVGDEVLGFSLR--RSSHATHTAVPVGQLIRKPPELSWEVAG 3919590
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
++ G+TA+ V + P PG TV V AAAGG G LV Q+ LR ARV+GI G
Sbjct: 3919589 SLYVVGVTAYAAVRAVAP-QPGETVAVSAAAGGVGSLVTQLLVLRRARVLGIAGPGNADW 3919413
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
L RA V+ +R AAP G+DA D G
Sbjct: 3919412 L-----RAHGVVPIAYGDGLADRLREAAPDGIDAFIDLFG 3919308
Score = 58.9 bits (141), Expect = 5e-07, Method: Composition-based stats.
Identities = 41/96 (42%), Positives = 53/96 (55%), Gaps = 1/96 (1%)
Frame = +1
Query: 66 GLTAHY-LVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATS 124
G TA++ + D P PG TVVV AAAG TG + Q+AK+ GARV+GI GG EK +
Sbjct: 4250491 GATAYFGMTDIGRP-QPGETVVVSAAAGATGSIAGQIAKIAGARVVGIAGGPEKCRAVVA 4250667
Query: 125 VGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
D IDY D ++ P+ VD +D VG
Sbjct: 4250668 DFGFDACIDY-KNDDVAAALKQHCPRRVDVYFDNVG 4250772
Score = 58.9 bits (141), Expect = 5e-07, Method: Composition-based stats.
Identities = 43/121 (35%), Positives = 62/121 (51%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G + AGTV ++G GV+ +G RV F G++A+ V L +PDGV+ AA
Sbjct: 2481620 GGDFAGTVTQLGSGVTGLEVGTRVYGF----MQGAFASRFNVPVQLLAPIPDGVSAVDAA 2481453
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+ LTA D + PG V++HAA+GG GL Q+A+ GA V ++A
Sbjct: 2481452 TIPAAALTARLAFDWA-QLKPGDRVLIHAASGGVGLAAIQLAQRHGATVFATASTYKRAT 2481276
Query: 121 L 121
L
Sbjct: 2481275 L 2481273
Score = 54.7 bits (130), Expect = 9e-06, Method: Composition-based stats.
Identities = 41/126 (32%), Positives = 60/126 (47%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G + AG V VGP V++ +G V GG+ G + F A + VP G+ D QAA
Sbjct: 2050587 GTDFAGVVTAVGPDVTDHKVGDHV---GGLSANGCWGTFLTCDARLAVTVPPGLADDQAA 2050417
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
AV TA+Y + G G V++H+A GG G +A+ GA + G ++
Sbjct: 2050416 AVTTAHATAYYGLHELARIGAGDRVLIHSATGGVGQAAIAIARAVGAEIFATAGSEQRRQ 2050237
Query: 121 LATSVG 126
L +G
Sbjct: 2050236 LLRDMG 2050219
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 38/126 (30%), Positives = 56/126 (44%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G + AG V VGPGV+E +G RV G GC G+ F + A + +P + AA
Sbjct: 2931286 GGDFAGVVTAVGPGVTEHRVGDRVGGLSGNGCWGT---FVLADARHAVTLPPEIPLRDAA 2931116
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
AV TA Y + P V++H+ GG G +A+ G + G ++
Sbjct: 2931115 AVPTASATAWYGLHDLARIAPTDKVLIHSGTGGVGQAAIAIARAAGCEIFATAGSPQRRQ 2930936
Query: 121 LATSVG 126
L +G
Sbjct: 2930935 LLRDMG 2930918
Score = 52.0 bits (123), Expect = 7e-05, Method: Composition-based stats.
Identities = 56/161 (34%), Positives = 75/161 (46%), Gaps = 1/161 (0%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G EGAG VV+VGP V+ +G V G +G GS A VV L VP G++ AA
Sbjct: 1477503 GAEGAGVVVEVGPAVTGLAVGDPV--MGLLGVVGSEA---VVDQRLLTAVPPGLSLVAAA 1477667
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
V LTA Y + PG V+VH A GG G+ Q+A+ GA V +
Sbjct: 1477668 GVPVVFLTALYGLSVLAGLRPGERVLVHTATGGVGMAAVQLARHYGAEVFATASRGKWDT 1477847
Query: 121 LATSVGRADVVIDYVATPDWP-PLVRAAAPKGVDAVYDGVG 160
L ++G D I +PD+ + A GVD V + +
Sbjct: 1477848 L-RAMGFDDDHIGDSRSPDFEQKFLAATGGAGVDVVLNSLA 1477967
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 53/165 (32%), Positives = 75/165 (45%), Gaps = 1/165 (0%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG VV+ P + G RV G +G A V+ + ++PD V+ A
Sbjct: 3541112 GAEIAG-VVRSAPEGAHVRSGDRVV--GLTMLSGGMAEVAVLAPDRVFKLPDKVSFEAGA 3541282
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMA-KLRGARVIGICGGAEKA 119
+L LT ++ + G TV+VH AAGG G ++A L AR I + +KA
Sbjct: 3541283 GLLFNDLTVYFALTVRGRLQRGETVLVHGAAGGIGTSALRLAPALGAARTIAVVSTTDKA 3541462
Query: 120 MLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
+AT+ G DVV+ A + +GVD V D VG F
Sbjct: 3541463 DIATAAGATDVVL---ADGFKDAVKELTHGRGVDIVVDPVGGDRF 3541588
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 44/134 (32%), Positives = 62/134 (46%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E +G + +VG GV+E +G+ V + G YA + V A LL +P GV AA
Sbjct: 267498 GMEVSGVIAEVGDGVTEWSVGQEVC---ALLAGGGYAEYVAVPAGQLLPIPAGVDLVDAA 267328
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+ T + G ++VH A G G Q+A+ GARV G AEK
Sbjct: 267327 GLPEVACTVWSNLVLIAGLRNGQRLLVHGGASGIGSHAIQVAQALGARVAVTAGSAEKLD 267148
Query: 121 LATSVGRADVVIDY 134
+G AD+ I+Y
Sbjct: 267147 FCRELG-ADITINY 267109
Score = 36.6 bits (83), Expect = 2.7, Method: Composition-based stats.
Identities = 36/95 (37%), Positives = 48/95 (50%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G + AG V VGP V E +G V GG+ G + F A+ + +P G+TDAQAA
Sbjct: 4204436 GTDFAGMVTAVGPDVIEHKIGDHV---GGLCPNGCWGTFVTCDANVAVTLPPGLTDAQAA 4204266
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTG 95
AV TA Y + G V++H+A GG G
Sbjct: 4204265 AVTTAHATAWYGLHDLARVKAGDKVLIHSATGGVG 4204161
Score = 36.2 bits (82), Expect = 3.5, Method: Composition-based stats.
Identities = 47/151 (31%), Positives = 65/151 (43%), Gaps = 25/151 (16%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVA--YFGG-------------VGCT----------GS 35
G E AG + ++G GV +G+RVA +FGG + C G
Sbjct: 1768715 GHEIAGRIAELGEGVEGFAVGQRVAVGWFGGCCYRCDPCRAGLFIHCVNGKVPSWHYPGG 1768536
Query: 36 YAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTG 95
YA V SAL +P+ +TDA+AA + C G+T + + + PG V + G
Sbjct: 1768535 YAESVTVPTSALARIPEELTDAEAAPMGCAGVTTYNALRHTKAL-PGDRVAILGVGGLGH 1768359
Query: 96 LLVCQMAKLRGARVIGICGGAEKAMLATSVG 126
L V Q A G I I G KA A +G
Sbjct: 1768358 LGV-QFAAAMGFETIAINRGTGKADDARKLG 1768269
Score = 35.0 bits (79), Expect = 8.4, Method: Composition-based stats.
Identities = 35/123 (28%), Positives = 56/123 (45%), Gaps = 1/123 (0%)
Frame = +2
Query: 27 FGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHY-LVDSSYPCGPGSTV 85
+ G G YA F V A+ +P G +D++ A +LC G+ + L+ + P PG +
Sbjct: 1725185 YTGWDADGGYAEFATVPAAFAHPLPGGYSDSELAPLLCAGIIGYRALLRAQLP--PGGRL 1725358
Query: 86 VVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVR 145
++ GG+ + Q+A +GA V + G LA +G A D PP+
Sbjct: 1725359 GLY-GFGGSAHITAQVALAQGAEVHVMTRGDRARELAIELGAASA----QGAADPPPVPL 1725523
Query: 146 AAA 148
AA
Sbjct: 1725524 DAA 1725532
>gb|AE017194.1| Bacillus cereus ATCC 10987, complete genome
Length = 5224283
Score = 97.1 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 67/161 (41%), Positives = 87/161 (54%), Gaps = 1/161 (0%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G EGAG V KVG V+ G R+A+ + A V + + +PD ++ AA
Sbjct: 3251479 GYEGAGIVEKVGADVTNIKPGDRIAF---ADVPFANAELVAVPSKKAIPLPDSISFETAA 3251649
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+VL QGLTAHYL SY G +VHAAAGG G L+ Q+ KL G +VIG+ EKA
Sbjct: 3251650 SVLLQGLTAHYLTKDSYEIKQGDIALVHAAAGGVGQLLIQIIKLLGGKVIGLTSAKEKAQ 3251829
Query: 121 LATSVGRADVVIDYVATPDWPP-LVRAAAPKGVDAVYDGVG 160
+AT G AD V Y T WP ++ GV+ VY+ VG
Sbjct: 3251830 IATLSG-ADHVFLY--TEAWPAKVLEITNGTGVNVVYESVG 3251943
Score = 58.5 bits (140), Expect = 8e-07, Method: Composition-based stats.
Identities = 52/160 (32%), Positives = 73/160 (45%), Gaps = 1/160 (0%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G + AG V +VG V G+RV F GSYA + V + +PD V AA
Sbjct: 2097836 GIDVAGIVERVGSHVKNINPGQRVIAFPQ---NGSYAEYVVSNENLTFVLPDEVDFQTAA 2097666
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGA-RVIGICGGAEKA 119
A T++ L+ + G +V++HAAAGG G Q+AKL GA VIG G K
Sbjct: 2097665 ACPIVSFTSYNLLANVARLQQGESVLIHAAAGGIGTTAIQLAKLLGAGTVIGTVGSEAKK 2097486
Query: 120 MLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGV 159
+ G AD +I + + +GVD + D +
Sbjct: 2097485 EIPLYAG-ADYIICHQNEDFAEKVNELTNGEGVDVILDSI 2097369
Score = 55.1 bits (131), Expect = 7e-06, Method: Composition-based stats.
Identities = 42/164 (25%), Positives = 75/164 (45%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G + +G + KVG V+ +G + G++A + + + P ++ +AA
Sbjct: 3275645 GNDFSGVITKVGSKVTRFKVGDEIYARPRKNKIGTFAEYIAIHEDDIALKPKNLSFEEAA 3275824
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
++ GLT++ + G +++HA +GG G Q+AK+ GA V A
Sbjct: 3275825 SIPLVGLTSYQALHDIMHLQKGQKILIHAGSGGVGTFAIQLAKIMGATVTTTASEA-GTN 3276001
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
L S+G AD +I+Y T + ++ DAV+D +G T
Sbjct: 3276002 LVKSLG-ADEIINY-KTEKFEEIL-----TNYDAVFDTIGGTTL 3276112
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 41/160 (25%), Positives = 67/160 (41%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G EG G V VG VS ++GKRV G G++ + ++ +PD + D AA
Sbjct: 1110670 GYEGVGIVEDVGAFVSRDLIGKRVLPLRG---EGTWQEYVKTSPDFVVPIPDSINDFTAA 1110500
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+ LTA + ++V+A G L Q++++ R+I + +
Sbjct: 1110499 QMYINPLTAWVTCTETLNLQRNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTE 1110320
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
+G A VID P + ++ G DA D +G
Sbjct: 1110319 ELLRLGAA-YVIDTSTAPLYETVMTLTNGIGADAAIDSIG 1110203
Score = 52.0 bits (123), Expect = 6e-05, Method: Composition-based stats.
Identities = 39/102 (38%), Positives = 55/102 (53%), Gaps = 1/102 (0%)
Frame = -3
Query: 34 GSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTA-HYLVDSSYPCGPGSTVVVHAAAG 92
GSYA F V++ + +P ++ +AA++ GLTA LVD + V++HA AG
Sbjct: 2629137 GSYAEFITVKSDLVSYMPTNLSFEEAASIPLAGLTAWQSLVDYA-KIKEHDRVLIHAGAG 2628961
Query: 93 GTGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDY 134
G G L Q+AK GA V + L S+G AD+VIDY
Sbjct: 2628960 GVGSLAIQIAKSFGAFVATTASSKNEEFL-KSLG-ADLVIDY 2628841
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 47/166 (28%), Positives = 76/166 (45%), Gaps = 5/166 (3%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEV-PDGVTDAQA 59
G E +G + ++G V++ G ++ + G YA +T V S L+ + P +T +A
Sbjct: 206253 GVELSGEIEEIGTAVTQFKKGDQIFALTELN-LGGYAEYTCVHESGLIALKPTNMTYEEA 206077
Query: 60 AAVLCQGLTA-HYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEK 118
A + G +A H+L G V+++ A+G G Q+AK G V +C +
Sbjct: 206076 AVIPFGGTSALHFLRKGRIK--KGQQVLIYGASGSVGTAAVQLAKYFGTTVTAVCSNSNF 205903
Query: 119 AMLATSVGRADVVIDYVATPDWPPLVRAAAPKGV---DAVYDGVGQ 161
L S+G AD VIDY + KG D ++D VG+
Sbjct: 205902 E-LVQSLG-ADKVIDY---------TKEDFTKGCERYDIIFDAVGK 205798
Score = 48.9 bits (115), Expect = 5e-04, Method: Composition-based stats.
Identities = 52/190 (27%), Positives = 81/190 (42%), Gaps = 26/190 (13%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYF-------------------------GGVGCTGS 35
G EG G V K+ V+ +G RV+ G G
Sbjct: 2199170 GHEGIGIVTKIADDVTSLKVGDRVSIAWMFQSCGRCEYCITGRETFCREVKNAGYSVDGG 2199349
Query: 36 YAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTG 95
A +V A ++VP+G+ AQA+++ C G+T + + S PG +V++ GG G
Sbjct: 2199350 MAEQCIVTADYAVKVPEGLDPAQASSITCAGVTTYKAIKVS-DIKPGQPIVIY-GCGGLG 2199523
Query: 96 LLVCQMAK-LRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDA 154
L Q AK + GA+VI + +K LA VG AD+ I+ ++ +V+ A
Sbjct: 2199524 NLAIQYAKNVFGAKVIAVDINDDKLALAKEVG-ADMTINPISQGPADKIVQEEFGGAYAA 2199700
Query: 155 VYDGVGQATF 164
V V + F
Sbjct: 2199701 VVTAVSKVAF 2199730
Score = 36.6 bits (83), Expect = 2.6, Method: Composition-based stats.
Identities = 46/164 (28%), Positives = 61/164 (37%), Gaps = 26/164 (15%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGC-------------------------TGS 35
G E +G VV++G GV+ +G RV C G
Sbjct: 767385 GHEFSGEVVEIGEGVTSHKVGDRVVVEPIYSCGKCEACKHGHYNVCEQLVFHGLGGEGGG 767564
Query: 36 YAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTG 95
++ +TVV + +PD +T Q A V + H + S G V G G
Sbjct: 767565 FSEYTVVPEDMVHHIPDEMTYEQGALVEPAAVAVHAVRQSKLKEGEAVAVF---GCGPIG 767735
Query: 96 LLVCQMAKLRGAR-VIGICGGAEKAMLATSVGRADVVIDYVATP 138
LLV Q AK GA VI + E+ LA G DYV P
Sbjct: 767736 LLVIQAAKAAGATPVIAVELSKERQELAKLAG-----ADYVLNP 767852
>gb|CP000750.2| Kineococcus radiotolerans SRS30216, complete genome
Length = 4761183
Score = 97.1 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 74/164 (45%), Positives = 92/164 (56%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G EGAG V + GPGV G+ VA+ GSYA +V A+ L+ VP+ V AA
Sbjct: 1231128 GSEGAGRVARPGPGVEGFAAGQLVAW---KEAPGSYAEQVLVPAAELVPVPEAVGATTAA 1230958
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
AVL QGLTAHYL ++P G+ +VHA AGG GLL+ Q+ KLRGA V+ KA
Sbjct: 1230957 AVLLQGLTAHYLATDTFPAAAGTWALVHAGAGGVGLLLTQVLKLRGANVLTTVSTPAKAE 1230778
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
L+ + G DVV+ Y P GVD VYDGVG+ TF
Sbjct: 1230777 LSRAAGADDVVVGYAGAT--PRARELTGGLGVDVVYDGVGRDTF 1230652
Score = 63.9 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 63/166 (37%), Positives = 87/166 (52%), Gaps = 10/166 (6%)
Frame = +2
Query: 2 EEGAGTVVKVGPGVSETMLGKRV-AYFGGVG-CTGSYAAFTVVQASALLEVPDGVTDAQA 59
++GAG V VGPGVS+ G RV G TG+ FTV+ A ++ +PDGV+
Sbjct: 3318215 QDGAGVVDAVGPGVSDLAAGDRVWTCMAAQGRPTGTAQEFTVLPAERVVRLPDGVSFDVG 3318394
Query: 60 AAVLCQGLTAHYLV----DSSYPCGPGS----TVVVHAAAGGTGLLVCQMAKLRGARVIG 111
A++ +TAH + D PG+ TV+V AG G Q+A+ GARV+
Sbjct: 3318395 ASLGVPAVTAHRALTVAEDGPRRLAPGALAGRTVLVSGGAGAVGHAAIQLARWAGARVVT 3318574
Query: 112 ICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYD 157
G EKA LAT+ G AD V++Y D +R AP+GVD V +
Sbjct: 3318575 TVSGPEKARLATAAG-ADHVVNY-REGDPAAAIREVAPEGVDLVVE 3318706
Score = 62.0 bits (149), Expect = 6e-08, Method: Composition-based stats.
Identities = 59/167 (35%), Positives = 76/167 (45%), Gaps = 4/167 (2%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G + G V VG GV+ LG+RV G YA V A + VP +
Sbjct: 4801 GYDAVGVVDAVGEGVTSPALGQRV--LARTEGRGGYATHVQVSADFTVPVPADLEAGALV 4974
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A+ L+A ++ TV+VH AAGG G + ++A+LRG RVIG A
Sbjct: 4975 ALPLNYLSAWQMLTRVALTPAEGTVLVHGAAGGVGSALVELARLRGLRVIGTASAARLPA 5154
Query: 121 L----ATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQAT 163
L A++V R DW VRA AP GVD V+DGVG T
Sbjct: 5155 LTEQGASAVDRGG---------DWVRGVRALAPGGVDTVFDGVGGFT 5268
Score = 62.0 bits (149), Expect = 7e-08, Method: Composition-based stats.
Identities = 59/165 (35%), Positives = 78/165 (47%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E +G V GPGV+ + + A GG G YA VV A LL VP GV +AA
Sbjct: 2005057 GLEVSGWVESAGPGVARAVGEEVCALLGG----GGYAERVVVPAGQLLPVPQGVGLVEAA 2005224
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A+ T V + PG ++VH + G G + Q+A+ GARV G A+K
Sbjct: 2005225 ALPEVACTVWSNVFTLAGLRPGELLLVHGGSSGIGTMAIQLARQIGARVAVTAGSADKLE 2005404
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATFA 165
+G A V+++Y D+ VRA P G D V D VG A
Sbjct: 2005405 RCAELG-AQVLVNY-RDDDFVERVRAFEPAGADVVLDLVGAPYLA 2005533
Score = 52.0 bits (123), Expect = 6e-05, Method: Composition-based stats.
Identities = 61/160 (38%), Positives = 82/160 (51%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G + +G V +VGPGV +G V G + A F + L +P G+ +AA
Sbjct: 273169 GNDFSGVVAEVGPGVHGVQVGDAVL---GFTPRAAQAQFVLTSPDRLAPLPPGLGWDEAA 272999
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
++ G TA V + P G TV+V AAAGG G++ Q+A LRGARV+G G A +
Sbjct: 272998 SIAGAGATAWAAVRAVDP-RAGETVLVSAAAGGVGVVATQLALLRGARVVGTVGEANEEF 272822
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
L TS+G V P VRAAAP+G+DA D G
Sbjct: 272821 L-TSLGAVPVRYG----PGLLERVRAAAPQGLDACVDTFG 272717
Score = 48.1 bits (113), Expect = 8e-04, Method: Composition-based stats.
Identities = 42/116 (36%), Positives = 55/116 (47%), Gaps = 1/116 (0%)
Frame = +1
Query: 46 ALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLR 105
A+ EVP + + GLTA+ + + G TV V AAG G V Q+A+L
Sbjct: 1929061 AVAEVPGAPSSLHLGILGMTGLTAYVGLTAIAGLREGETVFVSGAAGAVGTAVGQIARLL 1929240
Query: 106 GAR-VIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
GA VIG G AEK L D ++Y P L + AAP G+D +D VG
Sbjct: 1929241 GASTVIGSAGSAEKVALLEGKYGYDRALNYRDAPIREQLAQ-AAPDGIDVFFDNVG 1929405
Score = 43.9 bits (102), Expect = 0.019, Method: Composition-based stats.
Identities = 47/136 (34%), Positives = 60/136 (44%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G + AGTVV +G GV +G V G G++A + L P + QAA
Sbjct: 2374480 GGDLAGTVVALGDGVRRFRVGDEVYGTG----HGTFAEYARADEGKLAPRPATASFEQAA 2374313
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
AV G TA V PG V+V A GG G Q+A+ GA V G+ K
Sbjct: 2374312 AVPVSGTTALQAVRDHGRVRPGQQVLVIGAGGGVGSFAVQIARSSGAVVTGLTSPG-KLD 2374136
Query: 121 LATSVGRADVVIDYVA 136
S+G AD V+D A
Sbjct: 2374135 FVRSLG-ADTVLDRTA 2374091
Score = 43.1 bits (100), Expect = 0.028, Method: Composition-based stats.
Identities = 59/192 (30%), Positives = 80/192 (41%), Gaps = 32/192 (16%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFG-----------------------------GVG 31
G EGAG V ++GPG + + V +G G+G
Sbjct: 4539857 GHEGAGRVAELGPGTTGIDICTDVVVYGPWGCGTCHACAQGKENYCSRAAELGINPPGLG 4540036
Query: 32 CTGSYAAFTVVQASALLEVPDGVTDAQAAAVLCQ-GLTAHYLVDSSYPCGPGSTVVVHAA 90
G+ A F +V + L VP G D A L GLT ++ + S P + V
Sbjct: 4540037 APGALAEFMIVDSPRHL-VPIGDLDPVATVPLTDAGLTPYHAIKRSLPKLRAGSTAVVIG 4540213
Query: 91 AGGTGLLVCQMAK-LRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAA-A 148
GG G L Q+ + L ARV+ + EK LAT+VG DVV+ + D VR A
Sbjct: 4540214 TGGLGHLAIQILRALSPARVLALDVTEEKLALATAVGAHDVVL---SDADAAANVRKALG 4540384
Query: 149 PKGVDAVYDGVG 160
+G D V D VG
Sbjct: 4540385 GRGADLVLDFVG 4540420
Score = 42.4 bits (98), Expect = 0.056, Method: Composition-based stats.
Identities = 43/127 (33%), Positives = 63/127 (49%), Gaps = 2/127 (1%)
Frame = -3
Query: 37 AAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGL 96
A ++V SAL +P V+ AA + C G+TA+ V + PG+TV V A GG G+
Sbjct: 4760587 AEYSVCPVSALAVLPSEVSMTSAAVLGCAGMTAYGAVHRAGSVQPGATVAV-VAVGGLGM 4760411
Query: 97 LVCQMAKLRGAR-VIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAA-APKGVDA 154
+ Q+A GA V+ + EK +A +G V A D VRAA +GVD
Sbjct: 4760410 SMVQLAAAAGASTVVAVDVNDEKLAMARRLGATHTVNS--AKEDAHAAVRAATGGRGVDV 4760237
Query: 155 VYDGVGQ 161
+ +G+
Sbjct: 4760236 AIEALGR 4760216
Score = 39.3 bits (90), Expect = 0.39, Method: Composition-based stats.
Identities = 42/146 (28%), Positives = 58/146 (39%), Gaps = 37/146 (25%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCT--------------------------- 33
G E AGTV +VG V++ +G RV GVGC
Sbjct: 1967295 GHEIAGTVAEVGSEVTKFAVGDRV----GVGCMVDSCGECKNCTAGNEQFCLEGNVGTYN 1967462
Query: 34 ----------GSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGS 83
G Y+ VV +L +P+G+ +AA +LC G+T Y + GPG
Sbjct: 1967463 SVGKDGQPTHGGYSQSIVVTEGFVLRIPEGIELDEAAPLLCAGITT-YSPLRHWGAGPGK 1967639
Query: 84 TVVVHAAAGGTGLLVCQMAKLRGARV 109
V V GG G + ++A GA V
Sbjct: 1967640 KVAV-VGLGGLGHMAVKIAAAMGAEV 1967714
Score = 39.3 bits (90), Expect = 0.41, Method: Composition-based stats.
Identities = 39/129 (30%), Positives = 56/129 (43%)
Frame = +1
Query: 34 GSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGG 93
G Y+ VV ++ +PD + +A +LC LT Y + GS V V A GG
Sbjct: 4293352 GGYSTAIVVDEDYVVAIPDEIALEEAGPLLCAALTV-YTPLRYWGVRRGSRVGV-AGIGG 4293525
Query: 94 TGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVD 153
G L Q+A+ GA V+ +K A G + VV+ P + AA + +D
Sbjct: 4293526 LGHLAVQLARALGAEVVAFTTSPDKVPDALRFGASQVVVGE------DPALMAANARSLD 4293687
Query: 154 AVYDGVGQA 162
V D V A
Sbjct: 4293688 FVIDTVPYA 4293714
Score = 37.0 bits (84), Expect = 2.3, Method: Composition-based stats.
Identities = 36/137 (26%), Positives = 58/137 (42%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G + +GTV +G V + +G V F + G A + + A AL+ P + AA
Sbjct: 8366 GYDVSGTVDALGDDVEDLTVGDAVIGFLPMERDGGAAQYVIAPAQALVTAPTTIPLPDAA 8545
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A+ LTA + G ++++ A G G +AK G VI + ++
Sbjct: 8546 ALPSVALTAWQALFDDGELTAGQRILINGAGGVVGKYATALAKRAGIHVIAT--ASPRSA 8719
Query: 121 LATSVGRADVVIDYVAT 137
A AD +ID+ T
Sbjct: 8720 DAVRAAGADEIIDHTTT 8770
>gb|AY658836.1| Synthetic construct Peudomonas aeruginosa clone FLH042412.01F
PA2680 gene, partial cds
Length = 975
Score = 97.1 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 67/164 (40%), Positives = 95/164 (57%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G EGAG V +GPGV G RVAY G G+YA+ + A LL++PD + AA
Sbjct: 181 GLEGAGVVAALGPGVPGLAPGDRVAY--ATGPLGAYASARLYPAERLLKLPDTLAFEDAA 354
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A+L +G+TAHYL+ ++YP GPG+ ++++ AAG G L+ A+ GA VIG+ AE
Sbjct: 355 ALLFKGITAHYLLYATYPVGPGTRILLYGAAGAVGQLMAAWARHLGAWVIGVVSKAESVE 534
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
A + G D V+ + A + A + VD VYD +G+ATF
Sbjct: 535 RARAAG-CDEVLVFDAASLAAQVAELTAGRKVDVVYDPIGRATF 663
>gb|CP001131.1| Anaeromyxobacter sp. K, complete genome
Length = 5061632
Score = 96.7 bits (239), Expect = 2e-18, Method: Composition-based stats.
Identities = 72/165 (43%), Positives = 87/165 (52%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V VG GV G RVA+ GG GC YA VV A L+ +PD ++D AA
Sbjct: 3478324 GVEAAGRVEAVGAGVDHVRPGDRVAFVGGPGC---YAEARVVPADRLVRLPDAISDRTAA 3478154
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+ +GLTA L+ +YP G V+ HAAAGG GL+ Q K GA VIG G EKA
Sbjct: 3478153 GAMLKGLTAQVLIRRTYPVKAGDVVLWHAAAGGVGLIAIQWLKALGATVIGTVGSDEKAA 3477974
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATFA 165
LA + G D I Y + +GV VYD VG+ TFA
Sbjct: 3477973 LARAHG-CDHAIVYTREDFVARVREITGGEGVPVVYDSVGKTTFA 3477842
Score = 72.4 bits (176), Expect = 5e-11, Method: Composition-based stats.
Identities = 63/188 (33%), Positives = 88/188 (46%), Gaps = 24/188 (12%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGC------------------------TGSY 36
G + AG V VGPGV+E +G V G+ C +G
Sbjct: 3282691 GSDVAGVVDAVGPGVAEPKVGAEVVVAPGLSCGRCVRCRSGEENLCRGYAILGEHVSGGQ 3282512
Query: 37 AAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGL 96
A VV A L P ++ +AAAV LTA + + + PG TV+VHAA G G+
Sbjct: 3282511 AEAVVVPARNALPRPPNLSFEEAAAVPLTFLTAWHALVARARVRPGETVLVHAAGSGVGV 3282332
Query: 97 LVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVY 156
Q+AKL GARVI G K A ++G AD V++Y A + R +GV+ V+
Sbjct: 3282331 AAVQIAKLHGARVIATAGSDAKLERARALG-ADEVVNYEAKDFVQEVKRLTQRRGVEVVF 3282155
Query: 157 DGVGQATF 164
+ VG+ T+
Sbjct: 3282154 EHVGRKTW 3282131
Score = 65.5 bits (158), Expect = 6e-09, Method: Composition-based stats.
Identities = 59/164 (35%), Positives = 78/164 (47%), Gaps = 2/164 (1%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGV--GCTGSYAAFTVVQASALLEVPDGVTDAQ 58
G + +G V VGPGV+ G V Y + GSYA V A + P +T AQ
Sbjct: 3239451 GYDASGVVEAVGPGVNGFAPGDEVFYTPEIFGNALGSYAERNTVAAGIVARKPARLTHAQ 3239630
Query: 59 AAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEK 118
AAA+ G TA+ V PG +++V AGG G Q+ K GARVI G + +
Sbjct: 3239631 AAAIPLAGGTAYEAVVRRLQVRPGESLLVQGGAGGVGSFAVQLGKACGARVIATAGKSNQ 3239810
Query: 119 AMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQA 162
A L ++G ADV +DY + GVDAV+ VG A
Sbjct: 3239811 ATL-RALG-ADVCLDYDRDDVADAVREETGGAGVDAVFSTVGGA 3239936
Score = 62.4 bits (150), Expect = 4e-08, Method: Composition-based stats.
Identities = 50/162 (30%), Positives = 82/162 (50%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G + G V ++G GV+ G+ VA + G+YA + ++ L+ VP GV A+A
Sbjct: 3308621 GWDLVGVVDRLGAGVAGIEPGQVVA---AMPIHGAYAGWVCLRQEELVPVPPGVDAAEAV 3308451
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
++ +TA+ ++ S G G ++H AAGG G + Q+ +L G + G C + A
Sbjct: 3308450 CLVLNYVTAYQMMHRSAKVGRGERALIHGAAGGVGTALLQLGRLAGLEMYGTC-SSRGAS 3308274
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQA 162
+ T++G IDY D+ + A GVD V+D +G A
Sbjct: 3308273 VVTALG--GTPIDY-QHQDFVEEIHRLAGDGVDVVFDHIGGA 3308157
Score = 62.4 bits (150), Expect = 5e-08, Method: Composition-based stats.
Identities = 58/163 (35%), Positives = 75/163 (46%), Gaps = 3/163 (1%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGV---GCTGSYAAFTVVQASALLEVPDGVTDA 57
G + +G V +V PGV+ G V FG G+YA + A L P G+
Sbjct: 3785614 GWDISGVVEEVTPGVNRFQAGDEV--FGMPLFPRAAGAYAEYVAAPARQLARKPAGLDHV 3785441
Query: 58 QAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAE 117
QAA + GLTA + + PG V++HAA GG G L Q+AK RGA VI
Sbjct: 3785440 QAACLPLAGLTAWQALVDAADVQPGQRVLIHAAGGGVGHLAVQIAKARGAHVIAT-ASRS 3785264
Query: 118 KAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
K ++G AD +IDY T A KGVD +D V
Sbjct: 3785263 KHEFVRNLG-ADEIIDYRGTD------FTTAVKGVDVAFDLVA 3785156
Score = 49.7 bits (117), Expect = 3e-04, Method: Composition-based stats.
Identities = 41/126 (32%), Positives = 60/126 (47%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V VG GV+ G RV + + A +V L+ +PD ++ +A
Sbjct: 4737468 GLELAGEVAAVGAGVTAWKQGDRVM---AIAAGEAQAELCLVHERMLVRIPDRLSFEEAG 4737638
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A+ G+T+H + + PG V++HA G Q+AK GA VIG AEK
Sbjct: 4737639 AIPEAGMTSHDALFTLGGLRPGWPVLIHAVGSGVSTAAVQIAKAAGATVIGTSRTAEKLE 4737818
Query: 121 LATSVG 126
A ++G
Sbjct: 4737819 RARALG 4737836
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 56/158 (35%), Positives = 77/158 (48%), Gaps = 4/158 (2%)
Frame = +3
Query: 11 VGPGVSETMLGKRVAYFGG---VGCTGSYAAFTVVQASALLEVPDGVTDAQAAAVL-CQG 66
VG VS + + + G VG TG + + L+ + D + A VL G
Sbjct: 3732783 VGGTVSRVVASRHPGFREGELVVGATG-WQDCALSDGEGLMPIRDLAHPSYALGVLGMPG 3732959
Query: 67 LTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSVG 126
TA++ + + PG TVVV AA+G G +V Q+A+LRGARVIGI GGAEK T
Sbjct: 3732960 FTAYHGMLNIGEPRPGETVVVAAASGAVGAVVGQIARLRGARVIGIAGGAEKRRYVTEEL 3733139
Query: 127 RADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
D +D P + AA P G+D ++ VG A
Sbjct: 3733140 GFDACLDR-RDPGLAQQLAAACPDGIDVYFENVGGAVL 3733250
>gb|AC115682.2| Dictyostelium discoideum chromosome 2 map 4101105-4158643 strain AX4,
complete sequence
Length = 57538
Score = 96.7 bits (239), Expect = 2e-18, Method: Composition-based stats.
Identities = 63/169 (37%), Positives = 90/169 (53%), Gaps = 5/169 (2%)
Frame = -3
Query: 1 GEEGAGTVVKVGP-GVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQA 59
G EG+G V +VG ++ +G RV YF SYA +T+V + ++PD V
Sbjct: 48266 GREGSGVVEEVGSVAANKFKVGDRVCYFS----PDSYADYTLVPEQLVFKLPDSVDFKSG 48099
Query: 60 AAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKA 119
AA QG+T HYLV S++ T ++ A AGG G ++ QMAK+ GA+VI EK
Sbjct: 48098 AAYPLQGMTGHYLVRSTFKLESKHTCLIQAGAGGLGQILIQMAKILGAKVITTVSTPEKE 47919
Query: 120 MLATSVGRADVVIDYVATPDWPPLVRAAAP----KGVDAVYDGVGQATF 164
+ +G ADV+I+Y + L + GVD VYDGVG +T+
Sbjct: 47918 EICKKLG-ADVIINYNQGNNLEELAKLVKQLNDGNGVDVVYDGVGASTW 47775
>ref|XM_640352.2| Dictyostelium discoideum AX4 putative quinone oxidoreductase
(DDB_0237843) partial mRNA
Length = 996
Score = 96.7 bits (239), Expect = 3e-18, Method: Composition-based stats.
Identities = 63/169 (37%), Positives = 90/169 (53%), Gaps = 5/169 (2%)
Frame = +1
Query: 1 GEEGAGTVVKVGP-GVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQA 59
G EG+G V +VG ++ +G RV YF SYA +T+V + ++PD V
Sbjct: 184 GREGSGVVEEVGSVAANKFKVGDRVCYFS----PDSYADYTLVPEQLVFKLPDSVDFKSG 351
Query: 60 AAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKA 119
AA QG+T HYLV S++ T ++ A AGG G ++ QMAK+ GA+VI EK
Sbjct: 352 AAYPLQGMTGHYLVRSTFKLESKHTCLIQAGAGGLGQILIQMAKILGAKVITTVSTPEKE 531
Query: 120 MLATSVGRADVVIDYVATPDWPPLVRAAAP----KGVDAVYDGVGQATF 164
+ +G ADV+I+Y + L + GVD VYDGVG +T+
Sbjct: 532 EICKKLG-ADVIINYNQGNNLEELAKLVKQLNDGNGVDVVYDGVGASTW 675
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence
Length = 3587082
Score = 96.3 bits (238), Expect = 3e-18, Method: Composition-based stats.
Identities = 71/160 (44%), Positives = 93/160 (58%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG + VGPGV++ + G+RVAY G TGSYA+ + A +L +PDG++D AA
Sbjct: 1298373 GVEAAGVIDAVGPGVTDLVPGQRVAYAGMP--TGSYASLRTMPAERVLPIPDGLSDEAAA 1298546
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A L +G+T + L+ G G TV+VHAAAGG GLL Q A+ GARV+G G A KA
Sbjct: 1298547 AGLLKGITVYMLLHHVRQVGAGDTVLVHAAAGGVGLLATQWARALGARVLGTVGSAAKAA 1298726
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
LA + G A+ V+DY GVD DG+G
Sbjct: 1298727 LARTHG-AEAVVDYREEDFVAAARAFGGGAGVDFAIDGIG 1298843
Score = 76.3 bits (186), Expect = 3e-12, Method: Composition-based stats.
Identities = 61/163 (37%), Positives = 86/163 (52%), Gaps = 3/163 (1%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVA--YFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQ 58
G E GTV VG V +G+RVA FG TG YA + V+A ++ +PD V+D
Sbjct: 558848 GSETVGTVEAVGTNVQGFRIGERVAAALFGATSGTGGYAEYVTVRAPLIVAIPDAVSDDD 558669
Query: 59 AAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGAR-VIGICGGAE 117
A AV+ QGL A L+ + P +V + AAAGG G ++ Q+A+L GAR ++G+ G E
Sbjct: 558668 AVAVMLQGLVARVLLRET-PVA-ARSVAITAAAGGVGSMLIQLARLDGARTIVGLAGSME 558495
Query: 118 KAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
K ++G AD + Y L A G D V+D +G
Sbjct: 558494 KLSTVRALG-ADQAVSYRDEAWVDRLGAATGGTGPDVVFDSIG 558369
Score = 67.0 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 48/128 (37%), Positives = 66/128 (51%), Gaps = 3/128 (2%)
Frame = -3
Query: 36 YAAFTVVQASALLEVPDGV---TDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAG 92
YA QA+ L+++P A GLTA+Y + P PG T+VV AAAG
Sbjct: 2616427 YAVVPADQAAQLVKLPAASGLPLPTLLGACGMSGLTAYYGLTDITPVQPGETLVVSAAAG 2616248
Query: 93 GTGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGV 152
G + Q+ K+ GARV+GI GGA+K T D +DY A D+ ++AA P GV
Sbjct: 2616247 SVGSIAGQIGKIHGARVVGIAGGADKCRYLTETLGFDAAVDYKAD-DFRQQLKAATPDGV 2616071
Query: 153 DAVYDGVG 160
++ VG
Sbjct: 2616070 HVNFENVG 2616047
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 60/166 (36%), Positives = 77/166 (46%), Gaps = 2/166 (1%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCT--GSYAAFTVVQASALLEVPDGVTDAQ 58
G + AG V VG GV G RV VG G+YA + V+ +++ VPD ++ A+
Sbjct: 1680983 GFDAAGVVEAVGDGVDSFEPGMRVFAQTDVGAGRWGAYAEYVAVRHDSVVRVPDALSLAE 1681162
Query: 59 AAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEK 118
AA V L A + G V+VH AG G Q+A GARV C +
Sbjct: 1681163 AATVPTPALAAWAGLFDDGGLRAGQCVLVHGGAGAVGTFAIQLAVQAGARVAATCSARNR 1681342
Query: 119 AMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
+ S+G A IDY A D +RA AP GVD V D VG T
Sbjct: 1681343 ETV-ESLGAA-ASIDYRAQ-DIAAALRAWAPGGVDLVLDAVGGDTL 1681471
Score = 54.3 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 40/118 (33%), Positives = 61/118 (51%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E G V+ VG GV+ +G+RV+ G G ++A V A +L VPDG++D AA
Sbjct: 1352028 GTEAVGRVLAVGEGVTHLQVGQRVSVSGAFG---TWADAFVAPADQVLPVPDGISDELAA 1352198
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEK 118
+L +A ++D G ++++AAAG G V +A R RVI + A +
Sbjct: 1352199 QLLIMPTSAMVVLDD-LGVQSGQWMMLNAAAGAVGKNVALLAAARNIRVIALVNQAAQ 1352369
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 51/158 (32%), Positives = 69/158 (43%), Gaps = 1/158 (0%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRV-AYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQA 59
G E AG VV VG V+ LG V A G G YA + V S L +PDG+ +A
Sbjct: 3438491 GLEVAGEVVAVGRDVTRFALGDEVCALIPG----GGYAEYAVANESNTLAIPDGLDMTEA 3438324
Query: 60 AAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKA 119
AA+ +T + G +V++H A G G +AK GA I G+E
Sbjct: 3438323 AAMPETFMTVWLNLFQRGRFAAGDSVLIHGGASGIGTTATMLAKAFGASTIITTVGSEAQ 3438144
Query: 120 MLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYD 157
A+ AD+ I+Y + R KGVD + D
Sbjct: 3438143 RDASLRLGADLAIEYRNEDFVDAVKRFTDGKGVDVIVD 3438030
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 49/156 (31%), Positives = 71/156 (45%), Gaps = 18/156 (11%)
Frame = +2
Query: 3 EGAGTVVKVGPGVSETMLGKRV--AYFG----------------GVGCTGSYAAFTVVQA 44
+GAG V++ G V+ G RV YF G G A V
Sbjct: 2950328 DGAGEVIETGRDVTRFKPGDRVINTYFPHWIDGPPTPRKVSGSPGAQFDGVLAEHFVSDE 2950507
Query: 45 SALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKL 104
+AL+ +P + +AA + C G+TA + + GPG+TVV+ GG ++ Q+A+
Sbjct: 2950508 AALVAIPAHLNYDEAATLSCAGITAWNALFADGGLGPGATVVL-LGTGGVSIVALQLARA 2950684
Query: 105 RGARVIGICGGAEKAMLATSVGRADVVIDYVATPDW 140
G R I K A ++G AD I+Y ATPDW
Sbjct: 2950685 AGLRTIVTSSSDAKLERARALG-ADATINYRATPDW 2950789
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 56/169 (33%), Positives = 80/169 (47%), Gaps = 4/169 (2%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRV----AYFGGVGCTGSYAAFTVVQASALLEVPDGVTD 56
G + +G V VGPGV+ G V F G GSYA + V S + + P ++
Sbjct: 3298168 GHDVSGVVEAVGPGVTAFSPGDEVWCTPQIFDG---PGSYAEYHVAAESIVGKKPPSLSH 3298338
Query: 57 AQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGA 116
+AA++ G T + G +++VH AGG G + Q+AK GARV A
Sbjct: 3298339 LEAASLTLVGGTVWEALVVRAALRVGESILVHGGAGGVGHVAIQLAKAIGARVFTTVREA 3298518
Query: 117 EKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATFA 165
A S+G ADVVIDY ++R +GVD V+D +G T +
Sbjct: 3298519 -NVEFARSLG-ADVVIDYEKDDYVDAVMRDTGGRGVDVVFDTIGGNTLS 3298659
Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 37/65 (56%)
Frame = -1
Query: 100 QMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGV 159
Q+AKL+G RV+G+ GGA+K T D +D+ P + ++ A P G+D ++ V
Sbjct: 1827627 QIAKLKGCRVVGVAGGADKCAYVTDTLGFDACVDH-RDPAFAAKLKEACPNGIDIYFENV 1827451
Query: 160 GQATF 164
G A F
Sbjct: 1827450 GGAVF 1827436
Score = 43.1 bits (100), Expect = 0.029, Method: Composition-based stats.
Identities = 58/192 (30%), Positives = 76/192 (39%), Gaps = 28/192 (14%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAY------------------------FGGVGCTGSY 36
G E GTVV+VG GV+ G RVA F G+ G
Sbjct: 3551126 GHEFCGTVVEVGEGVTALRAGDRVAVEPEYRCSQCAYCRSGSYNLCVSMGFAGLMGDGGM 3551305
Query: 37 AAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGL 96
A F VV A L +PDGV+ QAA + + H L G V G GL
Sbjct: 3551306 ADFAVVPAYMLHRLPDGVSLEQAAVMEPAAVALHALRRGELRLGETCAVF---GLGPIGL 3551476
Query: 97 LVCQMAKLRGA-RVIGICGGAEKAMLATSVGRADVV-IDYVATPDWPPLVRAAAPK-GVD 153
L+ +AKL+GA ++ + E+ AT G + +RAA GVD
Sbjct: 3551477 LLIMLAKLQGATTIVAVDVSPERLAAATRFGATHTFDARALGASALQDAIRAATGGLGVD 3551656
Query: 154 AVYDGVG-QATF 164
A ++ G Q TF
Sbjct: 3551657 ASFEAAGLQTTF 3551692
Score = 41.2 bits (95), Expect = 0.12, Method: Composition-based stats.
Identities = 44/147 (29%), Positives = 65/147 (44%), Gaps = 3/147 (2%)
Frame = -2
Query: 14 GVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLV 73
GV G+RV +FG G+ A T+ + + +PD + D AAA+ G+++ +
Sbjct: 2016236 GVGRLDDGQRVYFFGSPAPFGAMAERTIAPDTRCVPLPDALDDVTAAAIAIPGMSSWAAL 2016057
Query: 74 DSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVID 133
G TV+V+ A G +G L ++AK GA + G A+ A AD V+
Sbjct: 2016056 TERARLVAGETVLVNGATGTSGRLAVRIAKHLGAAKVIATGRNAAALQALLGAGADAVVS 2015877
Query: 134 YVATPDWPPLVRAAAP---KGVDAVYD 157
D L RA P GVD D
Sbjct: 2015876 L--QQDDAHLARALEPHFRAGVDVALD 2015802
Score = 39.7 bits (91), Expect = 0.32, Method: Composition-based stats.
Identities = 51/168 (30%), Positives = 69/168 (41%), Gaps = 4/168 (2%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAY-FGGVGCT--GSYAAFTVVQASALLEVPDGVTDA 57
G E G VV+ G +G+RVA GG+ T GSYA V + ++++
Sbjct: 2255608 GVEAVGEVVEDPSGTFR--IGQRVATAMGGLQFTRPGSYAEEVTVLRTNVIDLDGTTLSW 2255781
Query: 58 QAAAVLCQG-LTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGA 116
+ A L Q LT ++ S G T++V A GL AK G V+ A
Sbjct: 2255782 EELAALPQAYLTIWGALNRSLGIEAGQTLLVRGATSTVGLAAITYAKASGLHVVATTRSA 2255961
Query: 117 EKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
G DVV+D D VR P G+DA + VG AT
Sbjct: 2255962 RNENRLFLAGADDVVVDGGEIAD---DVRRRFPNGIDAALEVVGAATL 2256096
>gb|CP000783.1| Enterobacter sakazakii ATCC BAA-894, complete genome
Length = 4368373
Score = 96.3 bits (238), Expect = 3e-18, Method: Composition-based stats.
Identities = 67/164 (40%), Positives = 84/164 (51%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V KVG GV+ G RV Y G+Y++ V A + +PD ++ QAA
Sbjct: 80114 GTEAAGIVTKVGSGVTHLKPGDRVVY--AQSALGAYSSVHNVPAEKAVVLPDVISFEQAA 79941
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A +GLT YL+ +Y P + HAAAGG GL+ CQ AK GAR+IG G AEKA
Sbjct: 79940 ACFLKGLTVFYLLRKTYEIKPDEMFLFHAAAGGVGLIACQWAKALGARLIGTVGSAEKAQ 79761
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
A G A I+Y L K V VYD VG+ T+
Sbjct: 79760 RAKQAG-AWQTINYREENVPERLRELTGGKKVRVVYDSVGKETW 79632
Score = 38.1 bits (87), Expect = 1.00, Method: Composition-based stats.
Identities = 41/151 (27%), Positives = 58/151 (38%), Gaps = 25/151 (16%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAY-------------------------FGGVGCTGS 35
G EG G VV VG GV+ G RV G GS
Sbjct: 1621168 GHEGVGHVVAVGQGVTHIKEGDRVGVPWLYSACGHCEHCLGGWETLCHSQQNSGYSVNGS 1621347
Query: 36 YAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTG 95
+A + + A+ + +PD V A +LC G+T + + + PG VV+ + GG G
Sbjct: 1621348 FAEYCLADANYVGILPDNVEFTHIAPILCAGVTVYKGLKMT-DTKPGDWVVI-SGIGGLG 1621521
Query: 96 LLVCQMAKLRGARVIGICGGAEKAMLATSVG 126
L Q A G V + +K A +G
Sbjct: 1621522 HLAIQYANAMGLNVAAVDIDNDKLEFAKRLG 1621614
>emb|CU458896.1| Mycobacterium abscessus chromosome, complete sequence
Length = 5067172
Score = 96.3 bits (238), Expect = 3e-18, Method: Composition-based stats.
Identities = 71/165 (43%), Positives = 94/165 (56%), Gaps = 1/165 (0%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G G+G + VGPGVS+ G RV Y G G+Y+ V+ A+ L+ +PDG++ AA
Sbjct: 3671636 GVAGSGIIEAVGPGVSQFGPGDRVTYTGSP--LGAYSTERVMPAAHLIGLPDGISCDTAA 3671463
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A+ +GLT YL+ +P G TV++HAAAGG GLL Q A L G VIG EKA
Sbjct: 3671462 AITMRGLTTAYLLRRIHPLRAGDTVLLHAAAGGVGLLFLQWANLLGVNVIGTVSNEEKAE 3671283
Query: 121 LATSVGRADVVIDYVATPDWPPLVRA-AAPKGVDAVYDGVGQATF 164
+A + G A V+I D P VR GV VYDG+G+AT+
Sbjct: 3671282 IARANGCAHVLI--YPREDVPRRVREITGGVGVPVVYDGIGKATY 3671154
Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 70/167 (41%), Positives = 88/167 (52%), Gaps = 3/167 (1%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E +G V VG GV G RVA V G YA T A +VP G++ AA
Sbjct: 2804014 GSEVSGVVRAVGEGVQSLAPGDRVA--SPVAAWG-YAESTTAPADYTAKVPAGLSAEVAA 2804184
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+ L QG+T HYL+ S YP G TV+VHA AGG GLL+ Q A RG RVI K
Sbjct: 2804185 SSLLQGITTHYLLTSVYPVAAGDTVLVHAGAGGMGLLLTQWATYRGVRVITTVSSEAKEK 2804364
Query: 121 LATSVGRADVV--IDYVATPDWPPLVRA-AAPKGVDAVYDGVGQATF 164
L+ G A+V+ D ++ +R A +GV VYDGVG++TF
Sbjct: 2804365 LSREAGAAEVLPYPDPADPSEFAAQIRELTAGEGVAVVYDGVGKSTF 2804505
Score = 63.2 bits (152), Expect = 3e-08, Method: Composition-based stats.
Identities = 61/161 (37%), Positives = 79/161 (49%), Gaps = 1/161 (0%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G + AG VV+ G GV+ G V FG S+A F VV AS L+ P+G++ A
Sbjct: 750398 GSDLAGVVVEAGHGVARFAPGDEV--FGYTDNRASHAEFVVVPASQLVTKPEGLSWEVAG 750571
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
++ G TA+ V S + PG TV V AAAGG G + Q+A+ GA VIGI G
Sbjct: 750572 SLFVAGTTAYAAVGSVH-LSPGDTVAVSAAAGGVGTIAVQLARAAGATVIGIAGPDNDEW 750748
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKG-VDAVYDGVG 160
L A +I + AAAP+G VDA D G
Sbjct: 750749 LT-----AHGIIPVNYGDGLAERITAAAPQGRVDAFLDLFG 750856
Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 41/121 (33%), Positives = 64/121 (52%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G + AG V ++G GV+ +G+RV +G + G++ + V A L +PDG++ +AA
Sbjct: 944182 GGDFAGIVTQLGEGVTGVEVGQRV--YGSM--QGAFGSRFNVPAQFLAPIPDGISGVEAA 944349
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+ LT D + PG V++HAA+GG GL QMA+ GA V ++A
Sbjct: 944350 TIPAAALTVRLSFDWA-QLKPGDKVLIHAASGGVGLAAIQMAQQFGAEVFATASTFKRAT 944526
Query: 121 L 121
L
Sbjct: 944527 L 944529
Score = 52.0 bits (123), Expect = 7e-05, Method: Composition-based stats.
Identities = 35/95 (36%), Positives = 51/95 (53%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G + AG V VG GV++ +G RV GG+ TG++ +F VV A+ +P V D +AA
Sbjct: 3190306 GVDFAGVVTAVGEGVTQHQVGDRV---GGMTPTGAWRSFVVVDANLAATLPAEVPDREAA 3190136
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTG 95
AV +TA Y + G V++H+ GG G
Sbjct: 3190135 AVPGAHVTAWYGLHELARISAGDKVLIHSGTGGVG 3190031
Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 39/106 (36%), Positives = 57/106 (53%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E +GT+ VG GV + G V G +G YA + A + + P ++ +AA
Sbjct: 1497258 GLEISGTIAAVGAGVDGLVPGDDVIAAGQIG---GYATRVIAAADQVFKKPASLSFNEAA 1497088
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRG 106
L G TA +L++++ G TV++H AAGG GLL Q+AK RG
Sbjct: 1497087 GFLLTGQTAVHLLEAT-NVTEGDTVLIHGAAGGVGLLATQLAKARG 1496953
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 38/118 (32%), Positives = 57/118 (48%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E +G VV++G G + +G+RV G+ A + V+A L + V AA
Sbjct: 3347032 GHEVSGIVVELGYGTTGLTVGQRVFGITDWTRNGALAQYVAVEARNLAPLSADVDHTVAA 3346853
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEK 118
A+ GLTA + G +V++H AAG G + Q+A GA VIG G ++
Sbjct: 3346852 ALPVSGLTAWQGLFLHGHIVAGQSVLIHGAAGAVGSVAVQLAHEAGAHVIGTGRGGQR 3346679
Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats.
Identities = 57/165 (34%), Positives = 73/165 (44%), Gaps = 1/165 (0%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG VV+ P S G RV F +G YA V S +L P + DA+A
Sbjct: 4688840 GIETAG-VVRSAPEGSGIKPGDRVMAFNFIG---GYAERVAVAPSNILPTPPQLDDAEAV 4688673
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A++ T ++ G TV+V AAGG G Q+AK GA+VI +
Sbjct: 4688672 ALIANYHTMYFAYARRGQLRAGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATE 4688493
Query: 121 LATSVGRADVVIDYVATPDWPPLVR-AAAPKGVDAVYDGVGQATF 164
SVG AD+V+ W VR A GVD V D +G F
Sbjct: 4688492 FVKSVG-ADIVLPL--EEGWAKAVREATGGAGVDMVVDPIGGPAF 4688367
Score = 44.3 bits (103), Expect = 0.015, Method: Composition-based stats.
Identities = 50/161 (31%), Positives = 70/161 (43%), Gaps = 1/161 (0%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRV-AYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQA 59
G E +GTV +G V+ +G+ V A G G YA V A+ LL VP V A
Sbjct: 218239 GLECSGTVAALGADVAHWSVGQPVCALLSG----GGYAEKVVAPATQLLPVPTNVQLDVA 218072
Query: 60 AAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKA 119
AA+ T + + G ++++H A G G Q+AK G RV G EK
Sbjct: 218071 AALPEVACTVWSNMMMTTKMSAGQSILIHGGASGIGTHTIQVAKALGLRVAVTAGTPEKL 217892
Query: 120 MLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
+G AD+ I+Y T + GVD + D +G
Sbjct: 217891 DACRDLG-ADLAINYRDTDFVQAVHSFTDGSGVDRILDIMG 217772
Score = 43.9 bits (102), Expect = 0.016, Method: Composition-based stats.
Identities = 42/121 (34%), Positives = 60/121 (49%), Gaps = 2/121 (1%)
Frame = -3
Query: 14 GVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLV 73
GV+ GKRV Y G + G A TVV + +EVP+ V AAA+ G++A +
Sbjct: 1854878 GVARLANGKRV-YSGSLAPYGMMAERTVVYPAGAVEVPEHVDSVTAAAIPNPGISAWVAL 1854702
Query: 74 DSSYPCGPGSTVVVHAAAGGTGLLVCQMAK-LRGARVIGICG-GAEKAMLATSVGRADVV 131
PG V+V A G TG L Q+AK + GA + + G AE+ +VG D +
Sbjct: 1854701 SHGAAVQPGQHVLVLGATGVTGSLAVQLAKSVFGAGHVTVAGRNAERLDWLRTVGADDAI 1854522
Query: 132 I 132
+
Sbjct: 1854521 M 1854519
Score = 43.5 bits (101), Expect = 0.022, Method: Composition-based stats.
Identities = 59/170 (34%), Positives = 82/170 (48%), Gaps = 7/170 (4%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALL------EVPDGV 54
G + AG + +VG GVS +G RV FGG + + A F ++ + + +PDG+
Sbjct: 1872372 GTDYAGVIDQVGDGVSGFAVGDRV--FGG-ALSRAVADFVLINVTGGIAAEEAHHIPDGI 1872542
Query: 55 TDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICG 114
D AA + G TA + P GPG TV++ A GG G+ Q+A++ GARVIG G
Sbjct: 1872543 DDRTAATLAIAGRTASAALAVVNP-GPGDTVLIGGAGGGVGVFAVQLARIAGARVIGT-G 1872716
Query: 115 GAEKAMLATSVGRADVVI-DYVATPDWPPLVRAAAPKGVDAVYDGVGQAT 163
A A +G V D +A VR AP G+ A D G T
Sbjct: 1872717 SATSADFLRGLGAEPVAYGDGLANR-----VRILAPGGITAAIDLHGTET 1872851
Score = 37.4 bits (85), Expect = 1.5, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 38/81 (46%)
Frame = +3
Query: 29 GVGCTGSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVH 88
G G Y+ VV + +L +PD + AA +LC G+T + + GPG V V
Sbjct: 3448602 GTQTQGGYSQAIVVDENYVLRIPDSLPLDAAAPLLCAGITTFSPL-RHWNAGPGKRVAV- 3448775
Query: 89 AAAGGTGLLVCQMAKLRGARV 109
GG G + ++ K GA V
Sbjct: 3448776 VGLGGLGHMAVKLGKAMGAEV 3448838
Score = 35.8 bits (81), Expect = 4.1, Method: Composition-based stats.
Identities = 45/164 (27%), Positives = 68/164 (41%), Gaps = 5/164 (3%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPD-----GVT 55
G EG G + +VG V+E +G+ +A G Y F + +A + D
Sbjct: 2235127 GMEGFGVITRVGSQVTEVRVGESIA-VAERGLLRRYLTFDLDGGAAWEPIADVHLQRDEF 2235303
Query: 56 DAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGG 115
D A TA Y PG TV++H AAGG G+ Q+A GA V G
Sbjct: 2235304 DPLAVGSGVPFFTAGYAFYKLADVRPGETVLIHGAAGGMGMAAVQVAANMGAVVYATAGS 2235483
Query: 116 AEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGV 159
E+ A +G A D + +++ +GVD +Y+ +
Sbjct: 2235484 EERRRAALDLG-ATAAFDSRSVGFVDDILQITEGRGVDVIYNSL 2235612
>gb|CP000459.1| Burkholderia cenocepacia HI2424 chromosome 2, complete sequence
Length = 2998664
Score = 96.3 bits (238), Expect = 3e-18, Method: Composition-based stats.
Identities = 72/160 (45%), Positives = 90/160 (56%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG + VGPGV+E + G+RVAY G TGSYA+ + A +L +PDG++D AA
Sbjct: 1652463 GVEAAGVIDAVGPGVTELVPGQRVAYAGLP--TGSYASLRTMPAERVLPIPDGLSDEAAA 1652290
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A L +G+T + L+ G G TV+VHAAAGG GLL Q A GARVIG G A KA
Sbjct: 1652289 AGLLKGITVYMLLHRVRQVGAGDTVLVHAAAGGVGLLATQWAHALGARVIGTVGSAAKAA 1652110
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
L G A+ V+DY GVD DG+G
Sbjct: 1652109 LVRVHG-AEAVVDYREEDFVAAARAFGGGAGVDYAIDGIG 1651993
Score = 94.4 bits (233), Expect = 1e-17, Method: Composition-based stats.
Identities = 68/164 (41%), Positives = 90/164 (54%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G EGAG VV+VG GV+ G RVA+ G+YA + VV A+ L +PD + AA
Sbjct: 1627132 GMEGAGEVVEVGAGVTSVRAGDRVAW---CIVWGAYAEYAVVPAARLARIPDDIAYDLAA 1626962
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A + QG TAHYL+D G T +VHAA+GG G L+ Q+AK RG V A+KA
Sbjct: 1626961 AAIFQGSTAHYLLDDVGKLEAGMTCLVHAASGGIGQLLVQLAKRRGVEVFATTSTADKAA 1626782
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
+A + G AD V+ Y + +GVD V+D VG+ T
Sbjct: 1626781 IARARG-ADHVLLYEHGGFADRIRELTDGRGVDVVFDAVGKTTL 1626653
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 41/95 (43%), Positives = 55/95 (57%)
Frame = +3
Query: 66 GLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSV 125
GLTA+Y + P PG T+VV AAAG G + Q+ K+ GARV+GI GGA+K T
Sbjct: 667803 GLTAYYGLTDIAPVQPGETLVVSAAAGSVGSIAGQIGKIHGARVVGIAGGADKCRYLTET 667982
Query: 126 GRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
D +DY A D+ ++AA P GV ++ VG
Sbjct: 667983 LGFDAAVDYKAD-DFRQQLKAATPDGVHVNFENVG 668084
Score = 59.7 bits (143), Expect = 3e-07, Method: Composition-based stats.
Identities = 53/158 (33%), Positives = 74/158 (46%), Gaps = 1/158 (0%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRV-AYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQA 59
G E AG VV VG V+ ++G RV A G G YA + V S L +PDG+ A+A
Sbjct: 2967590 GLEIAGEVVAVGRDVTRFVVGDRVCALIPG----GGYAEYAVANESNTLAIPDGLGMAEA 2967757
Query: 60 AAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKA 119
AA+ +T + PG +V++H A G G +AK GA I G++
Sbjct: 2967758 AALPETFMTVWLNLFQRGRFSPGESVLIHGGASGIGTTATMLAKAFGAATIITTVGSDAQ 2967937
Query: 120 MLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYD 157
A+ AD+ IDY + + R KGVD + D
Sbjct: 2967938 RDASMRLGADLAIDYRSEDFVEAVARFTGGKGVDVIVD 2968051
Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 37/65 (56%)
Frame = +1
Query: 100 QMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGV 159
Q+AKL+G RV+G+ GGA+K T D +D+ P + ++ A P G+D ++ V
Sbjct: 1348594 QIAKLKGCRVVGVAGGADKCAYVTGTLGFDACVDH-HDPAFAAKLKDACPNGIDVYFENV 1348770
Query: 160 GQATF 164
G A F
Sbjct: 1348771 GGAVF 1348785
Score = 43.5 bits (101), Expect = 0.022, Method: Composition-based stats.
Identities = 45/147 (30%), Positives = 66/147 (44%), Gaps = 3/147 (2%)
Frame = +3
Query: 14 GVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLV 73
GV G+RV +FG G+ A T+ + + +PD + D AAA+ G+++ +
Sbjct: 1171854 GVGRLEDGRRVYFFGAPAPFGAMAERTIAPDTQCVPLPDALDDVTAAAIAIPGMSSWAAL 1172033
Query: 74 DSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVID 133
G TV+V+ A G +G L ++AK GA + G A+ A AD V+
Sbjct: 1172034 TERAGFVAGETVLVNGATGTSGRLAVRIAKHLGAAKVIATGRNAAALQALLSAGADAVVS 1172213
Query: 134 YVATPDWPPLVRAAAPK---GVDAVYD 157
D L RA P GVD V D
Sbjct: 1172214 L--QQDDVHLARALEPHFRAGVDVVLD 1172288
Score = 42.4 bits (98), Expect = 0.055, Method: Composition-based stats.
Identities = 60/195 (30%), Positives = 78/195 (40%), Gaps = 31/195 (15%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAY------------------------FGGVGCTGSY 36
G E GTVV+VG V+ G RVA F G+ G
Sbjct: 2849910 GHEFCGTVVEVGADVTTLRAGDRVAVEPEYRCSQCAYCRSGSYNLCVSMGFAGLMGDGGM 2849731
Query: 37 AAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGL 96
A F VV A L +PDGV+ QAA + + H L G V G GL
Sbjct: 2849730 ADFAVVPAYMLHRLPDGVSLEQAAVMEPAAVALHALRRGELRLGETCAVF---GLGPIGL 2849560
Query: 97 LVCQMAKLRGA-RVIGICGGAEKAMLATSVGRADV----VIDYVATPDWPPLVRAAAPK- 150
L+ +AKL+GA ++ + E+ AT G +D A D +RAA
Sbjct: 2849559 LLIMLAKLQGATTIVAVDVSPERLAAATRFGATHAFDARTLDAAALQD---AIRAATGGL 2849389
Query: 151 GVDAVYDGVG-QATF 164
GVD ++ G QATF
Sbjct: 2849388 GVDTSFEAAGLQATF 2849344
Score = 36.6 bits (83), Expect = 2.6, Method: Composition-based stats.
Identities = 41/158 (25%), Positives = 61/158 (38%), Gaps = 25/158 (15%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAY-------------------------FGGVGCTGS 35
G EG G V VG GV+ G RV G GS
Sbjct: 1388071 GHEGVGIVAAVGAGVTHVREGDRVGVPWLYTACGHCEYCCTGWETLCHGQQNTGYSVNGS 1387892
Query: 36 YAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTG 95
YA + + + ++P V + A +LC G+T + + + PG + + + GG G
Sbjct: 1387891 YAEYVLADPDYVGQLPAQVAFDEIAPILCAGVTVYKGIRVT-DTRPGQWLAI-SGIGGLG 1387718
Query: 96 LLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVID 133
+ Q A+ G V I +K LA +G A + ID
Sbjct: 1387717 HVAVQYARAMGLHVAAIDISPDKLALARQLG-AHLTID 1387607
Score = 35.4 bits (80), Expect = 5.6, Method: Composition-based stats.
Identities = 45/164 (27%), Positives = 65/164 (39%), Gaps = 4/164 (2%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCT--GSYAAFTVVQASALLEVPDGVTDAQ 58
G E +G V VG V+ G V G Y V A A+++ PD ++ +
Sbjct: 492386 GYEASGVVAAVGRNVTTFAEGDAVNVVPAFSFADYGMYGEVVNVPARAVVKHPDSLSFEE 492207
Query: 59 AAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEK 118
AAA +TA+ + G V++ AA+ G Q+A GA I + G K
Sbjct: 492206 AAATWMMFVTAYGALIELGGLQRGEAVLIGAASSSVGQAAIQVANRVGAVPIALTRGEAK 492027
Query: 119 AMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDA--VYDGVG 160
G V+ V +P P A G+ A V+D VG
Sbjct: 492026 RQALLDAGAKHVI---VGSPADLPRQVAELTGGIGARLVFDPVG 491904
>gb|CP000379.1| Burkholderia cenocepacia AU 1054 chromosome 2, complete sequence
Length = 2788459
Score = 96.3 bits (238), Expect = 3e-18, Method: Composition-based stats.
Identities = 72/160 (45%), Positives = 90/160 (56%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG + VGPGV+E + G+RVAY G TGSYA+ + A +L +PDG++D AA
Sbjct: 828661 GVEAAGVIDAVGPGVTELVPGQRVAYAGLP--TGSYASLRTMPAERVLPIPDGLSDEAAA 828834
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A L +G+T + L+ G G TV+VHAAAGG GLL Q A GARVIG G A KA
Sbjct: 828835 AGLLKGITVYMLLHRVRQVGAGDTVLVHAAAGGVGLLATQWAHALGARVIGTVGSAAKAA 829014
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
L G A+ V+DY GVD DG+G
Sbjct: 829015 LVRVHG-AEAVVDYREEDFVAAARAFGGGAGVDYAIDGIG 829131
Score = 94.4 bits (233), Expect = 1e-17, Method: Composition-based stats.
Identities = 68/164 (41%), Positives = 90/164 (54%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G EGAG VV+VG GV+ G RVA+ G+YA + VV A+ L +PD + AA
Sbjct: 853992 GMEGAGEVVEVGAGVTSVRAGDRVAW---CIVWGAYAEYAVVPAARLARIPDDIAYDLAA 854162
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A + QG TAHYL+D G T +VHAA+GG G L+ Q+AK RG V A+KA
Sbjct: 854163 AAIFQGSTAHYLLDDVGKLEAGMTCLVHAASGGIGQLLVQLAKRRGVEVFATTSTADKAA 854342
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
+A + G AD V+ Y + +GVD V+D VG+ T
Sbjct: 854343 IARARG-ADHVLLYEHGGFADRIRELTDGRGVDVVFDAVGKTTL 854471
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 41/95 (43%), Positives = 55/95 (57%)
Frame = -1
Query: 66 GLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSV 125
GLTA+Y + P PG T+VV AAAG G + Q+ K+ GARV+GI GGA+K T
Sbjct: 1813318 GLTAYYGLTDIAPVQPGETLVVSAAAGSVGSIAGQIGKIHGARVVGIAGGADKCRYLTET 1813139
Query: 126 GRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
D +DY A D+ ++AA P GV ++ VG
Sbjct: 1813138 LGFDAAVDYKAD-DFRQQLKAATPDGVHVNFENVG 1813037
Score = 59.7 bits (143), Expect = 3e-07, Method: Composition-based stats.
Identities = 53/158 (33%), Positives = 74/158 (46%), Gaps = 1/158 (0%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRV-AYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQA 59
G E AG VV VG V+ ++G RV A G G YA + V S L +PDG+ A+A
Sbjct: 2299392 GLEIAGEVVAVGRDVTRFVVGDRVCALIPG----GGYAEYAVANESNTLAIPDGLGMAEA 2299225
Query: 60 AAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKA 119
AA+ +T + PG +V++H A G G +AK GA I G++
Sbjct: 2299224 AALPETFMTVWLNLFQRGRFSPGESVLIHGGASGIGTTATMLAKAFGAATIITTVGSDAQ 2299045
Query: 120 MLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYD 157
A+ AD+ IDY + + R KGVD + D
Sbjct: 2299044 RDASMRLGADLAIDYRSEDFVEAVARFTGGKGVDVIVD 2298931
Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 37/65 (56%)
Frame = -1
Query: 100 QMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGV 159
Q+AKL+G RV+G+ GGA+K T D +D+ P + ++ A P G+D ++ V
Sbjct: 1132522 QIAKLKGCRVVGVAGGADKCAYVTGTLGFDACVDH-HDPAFAAKLKDACPNGIDVYFENV 1132346
Query: 160 GQATF 164
G A F
Sbjct: 1132345 GGAVF 1132331
Score = 43.5 bits (101), Expect = 0.022, Method: Composition-based stats.
Identities = 45/147 (30%), Positives = 66/147 (44%), Gaps = 3/147 (2%)
Frame = -3
Query: 14 GVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLV 73
GV G+RV +FG G+ A T+ + + +PD + D AAA+ G+++ +
Sbjct: 1309262 GVGRLEDGRRVYFFGAPAPFGAMAERTIAPDTQCVPLPDALDDVTAAAIAIPGMSSWAAL 1309083
Query: 74 DSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVID 133
G TV+V+ A G +G L ++AK GA + G A+ A AD V+
Sbjct: 1309082 TERAGFVAGETVLVNGATGTSGRLAVRIAKHLGAAKVIATGRNAAALQALLSAGADAVVS 1308903
Query: 134 YVATPDWPPLVRAAAPK---GVDAVYD 157
D L RA P GVD V D
Sbjct: 1308902 L--QQDDVHLARALEPHFRAGVDVVLD 1308828
Score = 42.4 bits (98), Expect = 0.055, Method: Composition-based stats.
Identities = 60/195 (30%), Positives = 78/195 (40%), Gaps = 31/195 (15%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAY------------------------FGGVGCTGSY 36
G E GTVV+VG V+ G RVA F G+ G
Sbjct: 2417074 GHEFCGTVVEVGADVTTLRAGDRVAVEPEYRCSQCAYCRSGSYNLCVSMGFAGLMGDGGM 2417253
Query: 37 AAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGL 96
A F VV A L +PDGV+ QAA + + H L G V G GL
Sbjct: 2417254 ADFAVVPAYMLHRLPDGVSLEQAAVMEPAAVALHALRRGELRLGETCAVF---GLGPIGL 2417424
Query: 97 LVCQMAKLRGA-RVIGICGGAEKAMLATSVGRADV----VIDYVATPDWPPLVRAAAPK- 150
L+ +AKL+GA ++ + E+ AT G +D A D +RAA
Sbjct: 2417425 LLIMLAKLQGATTIVAVDVSPERLAAATRFGATHAFDARTLDAAALQD---AIRAATGGL 2417595
Query: 151 GVDAVYDGVG-QATF 164
GVD ++ G QATF
Sbjct: 2417596 GVDTSFEAAGLQATF 2417640
Score = 36.6 bits (83), Expect = 2.6, Method: Composition-based stats.
Identities = 41/158 (25%), Positives = 61/158 (38%), Gaps = 25/158 (15%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAY-------------------------FGGVGCTGS 35
G EG G V VG GV+ G RV G GS
Sbjct: 1093038 GHEGVGIVAAVGAGVTHVREGDRVGVPWLYTACGHCEYCCTGWETLCHGQQNTGYSVNGS 1093217
Query: 36 YAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTG 95
YA + + + ++P V + A +LC G+T + + + PG + + + GG G
Sbjct: 1093218 YAEYVLADPDYVGQLPAQVAFDEIAPILCAGVTVYKGIRVT-DTRPGQWLAI-SGIGGLG 1093391
Query: 96 LLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVID 133
+ Q A+ G V I +K LA +G A + ID
Sbjct: 1093392 HVAVQYARAMGLHVAAIDISPDKLALARQLG-AHLTID 1093502
Score = 35.4 bits (80), Expect = 5.6, Method: Composition-based stats.
Identities = 45/164 (27%), Positives = 65/164 (39%), Gaps = 4/164 (2%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCT--GSYAAFTVVQASALLEVPDGVTDAQ 58
G E +G V VG V+ G V G Y V A A+++ PD ++ +
Sbjct: 1988729 GYEASGVVAAVGRNVTTFAEGDAVNVVPAFSFADYGMYGEVVNVPARAVVKHPDSLSFEE 1988908
Query: 59 AAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEK 118
AAA +TA+ + G V++ AA+ G Q+A GA I + G K
Sbjct: 1988909 AAATWMMFVTAYGALIELGGLQRGEAVLIGAASSSVGQAAIQVANRVGAVPIALTRGEAK 1989088
Query: 119 AMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDA--VYDGVG 160
G V+ V +P P A G+ A V+D VG
Sbjct: 1989089 RQALLDAGAKHVI---VGSPADLPRQVAELTGGIGARLVFDPVG 1989211
>gb|BT004198.1| Arabidopsis thaliana clone RAFL15-28-A20 (R20893) putative quinone
oxidoreductase (At5g61510) mRNA, complete cds
Length = 1061
Score = 95.9 bits (237), Expect = 3e-18, Method: Composition-based stats.
Identities = 64/168 (38%), Positives = 92/168 (54%), Gaps = 4/168 (2%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E G VV VG G++ M+G VAY G G+YA ++ A ++ VP + AA
Sbjct: 223 GMEAVGEVVAVGSGLTGRMIGDLVAYAGNP--MGAYAEEQILPADKVVPVPSSIDPIVAA 396
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+++ +G+TA +L+ + PG T++VHAAAGG G L+CQ A GA VIG EKA
Sbjct: 397 SIMLKGMTAQFLLRRCFKVEPGHTILVHAAAGGVGSLLCQWANALGATVIGTVSTNEKAA 576
Query: 121 LATSVGRADVVI----DYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
A G V++ D+V+ + + KGV+ VYD VG+ TF
Sbjct: 577 QAKEDGCHHVIMYKNEDFVSRVN-----DITSGKGVNVVYDSVGKDTF 705
>gb|CP001177.1| Bacillus cereus AH187, complete genome
Length = 5269030
Score = 95.9 bits (237), Expect = 4e-18, Method: Composition-based stats.
Identities = 66/161 (40%), Positives = 86/161 (53%), Gaps = 1/161 (0%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G EGAG V +VG V+ G R+A+ + A V A + +PD ++ AA
Sbjct: 3259797 GYEGAGIVEEVGANVTNINPGDRIAF---ADVPFANAELVAVPAEKAIPLPDSISFETAA 3259967
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+VL QGLTAHYL SY G T ++HAAAGG G L+ QM KL G +VIG+ EK
Sbjct: 3259968 SVLLQGLTAHYLTKDSYQLKQGDTALIHAAAGGVGQLLIQMIKLLGGKVIGLTSSNEKGK 3260147
Query: 121 LATSVGRADVVIDYVATPDWP-PLVRAAAPKGVDAVYDGVG 160
+AT G AD V Y T W ++ GV+ VY+ VG
Sbjct: 3260148 VATLAG-ADHVFLY--TESWATKVLEITNGTGVNVVYESVG 3260261
Score = 62.8 bits (151), Expect = 4e-08, Method: Composition-based stats.
Identities = 49/132 (37%), Positives = 65/132 (49%), Gaps = 1/132 (0%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G + AG V +VG V G+RV F GSYA + V + +PD V AA
Sbjct: 2104491 GIDAAGIVERVGSHVKNIHPGQRVIAFPQ---NGSYAEYVVANENLTFVLPDEVDFQTAA 2104321
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGA-RVIGICGGAEKA 119
A T++ L+ + G +V++HAAAGG G Q+AKL GA +VIG G K
Sbjct: 2104320 ACPIVSFTSYNLLANVARLQQGESVLIHAAAGGIGTTAIQLAKLLGAGKVIGTVGSEAKK 2104141
Query: 120 MLATSVGRADVV 131
+A G AD V
Sbjct: 2104140 EIALDAG-ADYV 2104108
Score = 59.3 bits (142), Expect = 4e-07, Method: Composition-based stats.
Identities = 44/164 (26%), Positives = 77/164 (46%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G + AG ++KVG V+ +G + G++A + + + P ++ +AA
Sbjct: 3276521 GNDFAGVIIKVGSKVTRFKVGDEIYARPRKNKIGTFAEYIAIHEDDIALKPKNLSFEEAA 3276700
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
++ GLT++ + +++HA +GG G Q+AK+ GA V A A
Sbjct: 3276701 SIPLVGLTSYQALHDIMQLQKNQKILIHAGSGGVGTFAIQLAKIMGATVTTTASEA-GAN 3276877
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
L S+G AD +I+Y T + ++ K DAV+D +G T
Sbjct: 3276878 LVKSLG-ADQIINY-KTEKFEEIL-----KDYDAVFDTIGGTTL 3276988
Score = 56.2 bits (134), Expect = 4e-06, Method: Composition-based stats.
Identities = 42/160 (26%), Positives = 70/160 (43%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G EG G V VG VS ++GKRV G G++ + A ++ +PD + D AA
Sbjct: 1100656 GYEGVGIVEDVGAFVSRDLIGKRVLPLRG---EGTWQEYVKTSADFVIPIPDTIDDFTAA 1100486
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+ LTA + ++V+A G L Q++++ ++I + ++
Sbjct: 1100485 QMYINPLTAWVTCTETLNLKRNDVLLVNACGSAIGHLFAQLSQILNFQLIAVTRNSKHTD 1100306
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
+G A VID TP + ++ G DA D +G
Sbjct: 1100305 ELLQLG-AHHVIDTSTTPLYETVMELTNGLGADAAIDSIG 1100189
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 41/144 (28%), Positives = 67/144 (46%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G + AG V +GP V+ +G V + G+YA + V + + P ++ +AA
Sbjct: 3179608 GWDVAGVVAAIGPNVTACKVGDEVYSRPDIERNGAYAEYVAVDEKYVAKKPRNLSFEEAA 3179429
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
++ GLT+ + G+ V++HA +GG G Q+AK GA V +
Sbjct: 3179428 SIPLVGLTSWQSLVKFANVQKGNKVLIHAGSGGIGTFAIQLAKSFGAHV-ATTTSTKNMQ 3179252
Query: 121 LATSVGRADVVIDYVATPDWPPLV 144
+G AD V+DY T D+ L+
Sbjct: 3179251 FVKDLG-ADTVVDY-KTEDFSSLL 3179186
Score = 48.5 bits (114), Expect = 8e-04, Method: Composition-based stats.
Identities = 52/190 (27%), Positives = 81/190 (42%), Gaps = 26/190 (13%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYF-------------------------GGVGCTGS 35
G EG G V K+ V+ +G RV+ G G
Sbjct: 2217645 GHEGIGIVTKIADDVTSLKVGDRVSIAWMFQSCGRCEYCVTGRETFCREVKNAGYSVDGG 2217824
Query: 36 YAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTG 95
A +V A ++VP+G+ AQA+++ C G+T + + S PG +V++ GG G
Sbjct: 2217825 MAEQCIVTADYAVKVPEGLDPAQASSITCAGVTTYKAIKVS-NIKPGQPIVIY-GCGGLG 2217998
Query: 96 LLVCQMAK-LRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDA 154
L Q AK + GA+VI + +K LA VG AD+ I+ ++ +V+ A
Sbjct: 2217999 NLAIQYAKNVFGAKVIAVDINDDKLALAKEVG-ADMTINPISQGPADKIVQDEFGGAYAA 2218175
Query: 155 VYDGVGQATF 164
V V + F
Sbjct: 2218176 VVTAVSKVAF 2218205
Score = 48.5 bits (114), Expect = 8e-04, Method: Composition-based stats.
Identities = 41/136 (30%), Positives = 66/136 (48%), Gaps = 2/136 (1%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEV-PDGVTDAQA 59
G E +G + ++G V++ G ++ + G YA +T V S L+ + P VT +A
Sbjct: 183808 GVELSGEIEEIGTDVTQFKKGDQIFALTELN-VGGYAEYTCVHESGLVALKPTNVTYEEA 183632
Query: 60 AAVLCQGLTA-HYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEK 118
A + +A H+L + G V+++ A+G G Q+AK G V +C +
Sbjct: 183631 AVIPFGATSALHFLRKARIK--RGQQVLIYGASGSVGTAAIQLAKYFGTTVTAVCSHSNF 183458
Query: 119 AMLATSVGRADVVIDY 134
L S+G AD VIDY
Sbjct: 183457 E-LVQSLG-ADKVIDY 183416
Score = 41.2 bits (95), Expect = 0.11, Method: Composition-based stats.
Identities = 43/181 (23%), Positives = 72/181 (39%), Gaps = 17/181 (9%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCT-----------------GSYAAFTVVQ 43
G +GAG V ++G GVS +L V +G G++A + +V
Sbjct: 2529372 GSDGAGVVTEIGEGVSADLLQAEVIINPSIGWENIAEVPELPEVLGGPKDGTFAEYVIVP 2529551
Query: 44 ASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAK 103
A ++ P +T ++ + LTA+ + + G V++ GG AK
Sbjct: 2529552 AENVVGKPSYLTWEESGVLALSALTAYRALFTKGRLKCGEHVLIPGIGGGVATFAMLFAK 2529731
Query: 104 LRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQAT 163
GA+V K A + G AD + ++ +W + VD + D +G AT
Sbjct: 2529732 AIGAKVSVTSRVENKRKFAETYG-AD--FSFNSSGNWE---ESLCGGKVDLIIDSIGPAT 2529893
Query: 164 F 164
F
Sbjct: 2529894 F 2529896
Score = 36.6 bits (83), Expect = 3.1, Method: Composition-based stats.
Identities = 46/164 (28%), Positives = 61/164 (37%), Gaps = 26/164 (15%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGC-------------------------TGS 35
G E +G VV++G GV+ +G RV C G
Sbjct: 759690 GHEFSGEVVEIGEGVTSHKVGDRVVVEPIYSCGKCEACKHGHYNVCEQLVFHGLGGEGGG 759869
Query: 36 YAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTG 95
++ +TVV + +PD +T Q A V + H + S G V G G
Sbjct: 759870 FSEYTVVPEDMVHHIPDEMTYEQGALVEPAAVAVHAVRQSKLKEGEAVAVF---GCGPIG 760040
Query: 96 LLVCQMAKLRGAR-VIGICGGAEKAMLATSVGRADVVIDYVATP 138
LLV Q AK GA VI + E+ LA G DYV P
Sbjct: 760041 LLVIQAAKAAGATPVIAVELSKERQELAKLAG-----ADYVLNP 760157
>gb|CP000479.1| Mycobacterium avium 104, complete genome
Length = 5475491
Score = 95.9 bits (237), Expect = 4e-18, Method: Composition-based stats.
Identities = 72/165 (43%), Positives = 88/165 (53%), Gaps = 1/165 (0%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G+E GTV G GV +G RV TG YA + AS VPDGV AA
Sbjct: 3466209 GQELCGTVAAAGDGVDGFKVGDRVV---SAAATGGYAEYATAPASLTAHVPDGVAADVAA 3466379
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+ L +GLTAHYL+ S YP G TV+VHA AGG GL++ Q A L GARVI EKA
Sbjct: 3466380 SALLKGLTAHYLLTSVYPVQAGDTVLVHAGAGGVGLILTQWAHLLGARVITTVSTPEKAR 3466559
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAP-KGVDAVYDGVGQATF 164
+ G +V+ ++ +RA GV AVYDGVG +TF
Sbjct: 3466560 RSAQAGANEVLSYPDDADEFGNRIRALTDGAGVAAVYDGVGASTF 3466694
Score = 65.1 bits (157), Expect = 8e-09, Method: Composition-based stats.
Identities = 60/160 (37%), Positives = 77/160 (48%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G + AG V VGPGV+E +G V F S+A T V L+ P ++ A
Sbjct: 5344345 GSDLAGVVTAVGPGVTEFAVGDEVLGFSLR--RSSHATHTAVPVGQLIRKPPELSWEVAG 5344518
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
++ G+TA+ V + P PG TV V AAAGG G LV Q+ LR ARV+GI G
Sbjct: 5344519 SLYVVGVTAYAAVRAVAP-QPGETVAVSAAAGGVGSLVTQLLVLRKARVLGIAGPGNADW 5344695
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
L RA V+ +R AAP G+DA D G
Sbjct: 5344696 L-----RAHGVVPIAYGDGLTDRLREAAPDGIDAFIDLFG 5344800
Score = 59.3 bits (142), Expect = 4e-07, Method: Composition-based stats.
Identities = 41/96 (42%), Positives = 53/96 (55%), Gaps = 1/96 (1%)
Frame = -1
Query: 66 GLTAHY-LVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATS 124
G TA++ + D P PG TVVV AAAG TG + Q+AK+ GARV+GI GG EK +
Sbjct: 4975586 GATAYFGMTDIGRP-QPGETVVVSAAAGATGSIAGQIAKIAGARVVGIAGGPEKCRAVVA 4975410
Query: 125 VGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
D IDY D ++ P+ VD +D VG
Sbjct: 4975409 DFGFDACIDY-KNDDVAAALKQHCPRRVDVYFDNVG 4975305
Score = 58.9 bits (141), Expect = 5e-07, Method: Composition-based stats.
Identities = 43/121 (35%), Positives = 62/121 (51%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G + AGTV ++G GV+ +G RV F G++A+ V L +PDGV+ AA
Sbjct: 1755630 GGDFAGTVTQLGSGVTGLEVGTRVYGF----MQGAFASRFNVPVQLLAPIPDGVSAVDAA 1755797
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+ LTA D + PG V++HAA+GG GL Q+A+ GA V ++A
Sbjct: 1755798 TIPAAALTARLAFDWA-QLKPGDRVLIHAASGGVGLAAIQLAQRHGATVFATASTYKRAT 1755974
Query: 121 L 121
L
Sbjct: 1755975 L 1755977
Score = 55.1 bits (131), Expect = 8e-06, Method: Composition-based stats.
Identities = 39/126 (30%), Positives = 57/126 (45%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G + AG V VGPGV+E +G RV G GC GS F + A + +P + +AA
Sbjct: 1271592 GGDFAGVVTAVGPGVTEHRVGDRVGGLSGNGCWGS---FVLADARHAVTLPPEIPLREAA 1271762
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
AV TA Y + P V++H+ GG G +A+ G + G ++
Sbjct: 1271763 AVPTASATAWYGLHDLARIAPTDKVLIHSGTGGVGQAAIAIARAAGCEIFATAGSPQRRQ 1271942
Query: 121 LATSVG 126
L +G
Sbjct: 1271943 LLRDMG 1271960
Score = 52.0 bits (123), Expect = 6e-05, Method: Composition-based stats.
Identities = 56/161 (34%), Positives = 75/161 (46%), Gaps = 1/161 (0%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G EGAG VV+VGP V+ +G V G +G GS A VV L VP G++ AA
Sbjct: 3186242 GAEGAGVVVEVGPAVTGLAVGDPV--MGLLGVVGSEA---VVDQRLLTAVPPGLSLVAAA 3186078
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
V LTA Y + PG V+VH A GG G+ Q+A+ GA V +
Sbjct: 3186077 GVPVVFLTALYGLSVLSGLRPGERVLVHTATGGVGMAAVQLARHYGAEVFATASRGKWDT 3185898
Query: 121 LATSVGRADVVIDYVATPDWP-PLVRAAAPKGVDAVYDGVG 160
L ++G D I +PD+ + A GVD V + +
Sbjct: 3185897 L-RAMGFDDDHIGDSRSPDFEQKFLAATGGAGVDVVLNSLA 3185778
Score = 52.0 bits (123), Expect = 6e-05, Method: Composition-based stats.
Identities = 56/160 (35%), Positives = 76/160 (47%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G EGAG V +VG GV++ +G A G G GS AA V + VP G + AQAA
Sbjct: 3179833 GAEGAGVVTEVGAGVTDVAVGD--AVMGIFGLVGSEAA---VDRRLVTRVPPGWSMAQAA 3179669
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+ LTA+Y + G V+VHAA GG G+ Q+A+ GA V +
Sbjct: 3179668 GIPVVFLTAYYGLSVLAGLRAGQRVLVHAATGGVGMAAVQLARHWGAEVFATASRGKWDT 3179489
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
L ++G D I T D+ AAP G+D V + +
Sbjct: 3179488 L-RAMGFDDAHIADSRTLDFEQKF-GAAPGGMDVVLNSLA 3179375
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 53/165 (32%), Positives = 75/165 (45%), Gaps = 1/165 (0%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG VV+ P + G RV G +G A V+ + ++PD V+ A
Sbjct: 4141355 GAEIAG-VVRSAPEGAHVRSGDRVV--GLTMLSGGMAEVAVLAPDRVFKLPDNVSFEAGA 4141525
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMA-KLRGARVIGICGGAEKA 119
+L LT ++ + G TV+VH AAGG G ++A L AR I + +KA
Sbjct: 4141526 GLLFNDLTVYFALTVRGRLQRGETVLVHGAAGGIGTSALRLAPALGAARTIAVVSTTDKA 4141705
Query: 120 MLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
+AT+ G DVV+ A + +GVD V D VG F
Sbjct: 4141706 DIATAAGATDVVL---ADGFKDAVKELTHGRGVDIVVDPVGGDRF 4141831
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 44/134 (32%), Positives = 62/134 (46%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E +G + +VG GV+E +G+ V + G YA + V A LL +P GV AA
Sbjct: 247988 GMEVSGVIAEVGDGVTEWSVGQEVC---ALLAGGGYAEYVAVPAGQLLPIPAGVDLVDAA 247818
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+ T + G ++VH A G G Q+A+ GARV G AEK
Sbjct: 247817 GLPEVACTVWSNLVLIAGLRNGQLLLVHGGASGIGSHAIQVARALGARVAVTAGSAEKLG 247638
Query: 121 LATSVGRADVVIDY 134
+G AD+ I+Y
Sbjct: 247637 FCRELG-ADITINY 247599
Score = 45.4 bits (106), Expect = 0.006, Method: Composition-based stats.
Identities = 34/95 (35%), Positives = 48/95 (50%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G + AG V VGP V++ +G V GG+ G + F A + +P G+ D QAA
Sbjct: 2387972 GTDFAGVVTAVGPDVTDHKVGDHV---GGLSANGCWGTFLTCDARLAVTLPPGLADDQAA 2388142
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTG 95
AV TA+Y + G G V++H+A GG G
Sbjct: 2388143 AVTTAHATAYYGLHELARIGAGDRVLIHSATGGVG 2388247
Score = 36.2 bits (82), Expect = 3.5, Method: Composition-based stats.
Identities = 47/151 (31%), Positives = 65/151 (43%), Gaps = 25/151 (16%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVA--YFGG-------------VGCT----------GS 35
G E AG + ++G GV +G+RVA +FGG + C G
Sbjct: 2838060 GHEIAGRIAELGEGVEGFAVGQRVAVGWFGGCCYRCDPCRAGLFIHCVNGKVPSWHYPGG 2838239
Query: 36 YAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTG 95
YA V SAL +P+ +TDA+AA + C G+T + + + PG V + G
Sbjct: 2838240 YAESVTVPTSALARIPEELTDAEAAPMGCAGVTTYNALRHTKAL-PGDRVAILGVGGLGH 2838416
Query: 96 LLVCQMAKLRGARVIGICGGAEKAMLATSVG 126
L V Q A G I I G KA A +G
Sbjct: 2838417 LGV-QFAAAMGFETIAINRGTGKADDARKLG 2838506
Score = 35.4 bits (80), Expect = 6.6, Method: Composition-based stats.
Identities = 35/123 (28%), Positives = 56/123 (45%), Gaps = 1/123 (0%)
Frame = -1
Query: 27 FGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHY-LVDSSYPCGPGSTV 85
+ G G YA F V A+ +P G +D++ A +LC G+ + L+ + P PG +
Sbjct: 2884463 YTGWDADGGYAEFATVPAAFAHPLPGGYSDSELAPLLCAGIIGYRALLRAQLP--PGGRL 2884290
Query: 86 VVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVR 145
++ GG+ + Q+A +GA V + G LA +G A D PP+
Sbjct: 2884289 GLY-GFGGSAHITAQVALAQGAEVHVMTRGERARELAIELGAASA----QGAADPPPVPL 2884125
Query: 146 AAA 148
AA
Sbjct: 2884124 DAA 2884116
>gb|CP001359.1| Anaeromyxobacter dehalogenans 2CP-1, complete genome
Length = 5029329
Score = 95.9 bits (237), Expect = 4e-18, Method: Composition-based stats.
Identities = 72/165 (43%), Positives = 87/165 (52%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V VG GV G RVA+ GG GC YA VV A L+ +PD ++D AA
Sbjct: 3559257 GVEAAGRVEAVGAGVDHFRPGDRVAFVGGPGC---YAEARVVPADRLVRLPDAISDRTAA 3559087
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+ +GLTA L+ +YP G V+ HAAAGG GL+ Q K GA VIG G EKA
Sbjct: 3559086 GAMLKGLTAQVLIRRTYPVKAGDVVLWHAAAGGVGLIAIQWLKALGATVIGTVGSDEKAA 3558907
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATFA 165
LA + G D I Y + +GV VYD VG+ TFA
Sbjct: 3558906 LARAHG-CDHAIVYTREDFVARVREITGGEGVPVVYDSVGKTTFA 3558775
Score = 74.7 bits (182), Expect = 8e-12, Method: Composition-based stats.
Identities = 64/188 (34%), Positives = 88/188 (46%), Gaps = 24/188 (12%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGC------------------------TGSY 36
G + AG V VGPGV E +G V G+ C +G
Sbjct: 3352369 GSDVAGVVDAVGPGVDEPKVGAEVVLAPGLSCGRCVRCRSGEENLCRGYAILGEHVSGGQ 3352190
Query: 37 AAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGL 96
A VV A L +P ++ +AAAV LTA + + + PG TV+VHAA G G+
Sbjct: 3352189 AEAVVVPARNALPLPPNLSFEEAAAVPLTFLTAWHALVARARVRPGETVLVHAAGSGVGV 3352010
Query: 97 LVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVY 156
Q+AKL GARVI G K A ++G AD V++Y A + R +GVD V+
Sbjct: 3352009 AAVQIAKLHGARVIATAGSDAKLERARALG-ADEVVNYEAKDFVQEVKRLTQRRGVDVVF 3351833
Query: 157 DGVGQATF 164
+ VG+ T+
Sbjct: 3351832 EHVGRKTW 3351809
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 48/162 (29%), Positives = 80/162 (49%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G + G V ++G G++ G+ VA + G+YA + + L+ VP GV A+A
Sbjct: 3390272 GWDLVGVVDRLGAGIAGIEPGQVVA---AMPIHGAYAGWVCLPQEELVPVPAGVDAAEAV 3390102
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
++ +TA+ ++ S G ++H AAGG G + Q+ +L G + G C + A
Sbjct: 3390101 CLVLNYITAYQMMHRSAKVRRGGRALIHGAAGGVGTALLQLGRLAGLELYGTC-SSRGAS 3389925
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQA 162
+ T++G IDY D+ + A GVD V+D +G A
Sbjct: 3389924 VVTALG--GTPIDY-QHQDFVEEIHRLAGDGVDVVFDHIGGA 3389808
Score = 49.7 bits (117), Expect = 3e-04, Method: Composition-based stats.
Identities = 41/126 (32%), Positives = 60/126 (47%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V VG GV+ G RV + + A +V L+ +PD ++ +A
Sbjct: 4713329 GLELAGEVAAVGAGVTAWKPGDRVM---AIAAGEAQAELCLVHERMLVRIPDRLSFEEAG 4713499
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A+ G+T+H + + PG V++HA G Q+AK GA VIG AEK
Sbjct: 4713500 AIPEAGMTSHDALFTLGGLRPGWPVLIHAVGSGVSTAAVQIAKAAGATVIGTSRTAEKLE 4713679
Query: 121 LATSVG 126
A ++G
Sbjct: 4713680 RARALG 4713697
Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 60/167 (35%), Positives = 81/167 (48%), Gaps = 6/167 (3%)
Frame = +3
Query: 4 GAGTVVKV----GPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQA 59
G GTV +V PG E L +G TG + + + L+ V D + A
Sbjct: 3778494 GGGTVSRVVASRHPGFREGELV--------LGATG-WQDYALSDGEGLMPVRDTAHPSYA 3778646
Query: 60 AAVL-CQGLTA-HYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAE 117
+VL G TA H L++ P PG TVVV AA+G G +V Q+A++RGARVIG+ GGAE
Sbjct: 3778647 LSVLGMPGFTAYHGLLNIGQP-RPGETVVVAAASGAVGAVVGQIARIRGARVIGVAGGAE 3778823
Query: 118 KAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
K T D +D P + A P G+D ++ VG A
Sbjct: 3778824 KRRYVTEQLGFDACLDR-RDPHLAQQLAEACPDGIDVYFENVGGAVL 3778961
>gb|CP000927.1| Caulobacter sp. K31, complete genome
Length = 5477872
Score = 95.9 bits (237), Expect = 4e-18, Method: Composition-based stats.
Identities = 73/164 (44%), Positives = 91/164 (55%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V +VG V+ LG RVAY G +G +YA VV A ++VPD V+ AA
Sbjct: 5424246 GLEAAGVVEEVGEDVTRFKLGDRVAYNGTLG---AYAEAAVVPADRAVKVPDAVSLETAA 5424076
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
AVL +G+TA +LV + P TV++HAAAGG G ++ Q AK GA VI G KA
Sbjct: 5424075 AVLLKGMTAEFLVQRCHRVEPDQTVLIHAAAGGVGSILVQWAKALGATVIATVGSEAKAA 5423896
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
LA G AD VI Y + +GV VYDGVG+ TF
Sbjct: 5423895 LARDHG-ADHVILYGEEDVAARVSEITGGQGVAVVYDGVGKDTF 5423767
Score = 68.9 bits (167), Expect = 5e-10, Method: Composition-based stats.
Identities = 44/95 (46%), Positives = 55/95 (57%)
Frame = +1
Query: 66 GLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSV 125
GLTA+ + G V V AAAG G +VCQ+AK++G VIG GG EK S+
Sbjct: 3398743 GLTAYVGLLKIAALKEGDVVFVSAAAGAVGQVVCQIAKIKGHTVIGSAGGPEKVAFLKSI 3398922
Query: 126 GRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
G D VIDY A+PD + AAPKG+D +D VG
Sbjct: 3398923 G-VDHVIDYKASPDVVAELGKAAPKGIDVYFDNVG 3399024
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 42/95 (44%), Positives = 54/95 (56%)
Frame = +1
Query: 66 GLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSV 125
GLTA+ + G TV V AA+G G +VCQ+AK++G VIG GG EK +
Sbjct: 468907 GLTAYVGLTKVAQAKAGETVFVSAASGAVGSVVCQIAKIKGCTVIGSAGGPEKIAFLKEI 469086
Query: 126 GRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
G DV IDY A PD + AAP+G+D +D VG
Sbjct: 469087 G-VDVAIDYKAEPDLAAALAKAAPQGIDVYFDNVG 469188
Score = 54.3 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 55/150 (36%), Positives = 67/150 (44%), Gaps = 14/150 (9%)
Frame = -1
Query: 28 GGVGCTGSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLV-----DSSYPCGP- 81
G G + +YA + V AS L P GV A AA LTA + D P P
Sbjct: 476935 GMAGESRAYAEYVSVPASELALKPAGVDHAHAAGAPMSLLTAWQFMIELGHDEQNPLQPN 476756
Query: 82 --------GSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVID 133
G TV+V+ AAGG G Q+AK +GARVI + G +A L +G AD ID
Sbjct: 476755 RHEPVPLEGKTVLVNGAAGGVGHFAVQLAKWKGARVIAVASGKNEAFL-RDLG-ADEFID 476582
Query: 134 YVATPDWPPLVRAAAPKGVDAVYDGVGQAT 163
Y T V + VD V D VG T
Sbjct: 476581 YNTT------VPEDVVRDVDLVIDSVGGPT 476510
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 62/173 (35%), Positives = 80/173 (46%), Gaps = 8/173 (4%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVP-----DGVT 55
G E G V VG GV +G+ VA F G +A + VV SALL VP V
Sbjct: 543835 GLEIVGEVAAVGDGVEGFSVGQPVAAFSRSG----HAQYAVV--SALLAVPLDLAGQAVA 543996
Query: 56 DAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGA-RVIGICG 114
+A V C G+TAH L+ G TV V AAGG G ++ Q AK GA +VIG G
Sbjct: 543997 PDRAIGVPCTGVTAHQLLTLMGRLSEGETVFVQGAAGGVGTMLGQQAKALGAGKVIGSVG 544176
Query: 115 GAEKAMLATSVGRADVVI--DYVATPDWPPLVRAAAPKGVDAVYDGVGQATFA 165
K A G +V++ +V + L + +GVD +GV A A
Sbjct: 544177 SESKFGFAREHGYDEVMLRDGFVES-----LKASTGGRGVDLFLEGVSGANLA 544320
Score = 48.5 bits (114), Expect = 7e-04, Method: Composition-based stats.
Identities = 49/135 (36%), Positives = 65/135 (48%), Gaps = 4/135 (2%)
Frame = -1
Query: 34 GSYAAFTVVQASALLEVP---DGVTD-AQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHA 89
G YA + VV A L +P +G D A AAA+ T V G T+++H
Sbjct: 962260 GGYAQYAVVDARHALPIPANSEGEFDFAHAAALPETVFTVFANVFEHGALKLGETLLIHG 962081
Query: 90 AAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAP 149
G G MAK GARVI GA+K A ++G AD+ +D T D+ + +AA
Sbjct: 962080 GTSGIGTTAIAMAKAHGARVIATGRGADKKAQALALG-ADIAVD-AKTEDFAAIAKAAG- 961910
Query: 150 KGVDAVYDGVGQATF 164
GVD V D VG + F
Sbjct: 961909 -GVDVVLDMVGASYF 961868
Score = 48.5 bits (114), Expect = 7e-04, Method: Composition-based stats.
Identities = 43/155 (27%), Positives = 65/155 (41%), Gaps = 24/155 (15%)
Frame = -2
Query: 34 GSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYP--CGPGSTVVVHAAA 91
GS+A F VQ+ L+ P +T +AA TA+ ++ P PG V+V A+
Sbjct: 1128927 GSFAQFCRVQSRQLMPRPKHLTWEEAACYTLTLATAYRMLFGHKPHELKPGQNVLVWGAS 1128748
Query: 92 GGTGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAP-- 149
GG G+ Q+A + GA IG+ +K S+G A V++ W L P
Sbjct: 1128747 GGLGVFAVQLAAVAGANAIGVVSDDDKRDFVLSMG-AKAVLNRKEFNCWGQLPTVNGPEF 1128571
Query: 150 --------------------KGVDAVYDGVGQATF 164
K VD V++ G++TF
Sbjct: 1128570 NDYMKESRKFGKAIWQVTGNKDVDLVFEHPGESTF 1128466
Score = 45.4 bits (106), Expect = 0.006, Method: Composition-based stats.
Identities = 52/164 (31%), Positives = 76/164 (46%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G + AG +V+VG V+ +G++V V GS+A V A VP+G +A+
Sbjct: 3327064 GYQAAGEIVEVGAEVTHLKIGQKVV---TVNAFGSHAELRSVPARNAWPVPEGFDVQKAS 3326894
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A+ TAH + + G TV+V A AG G+ Q+AK GA V+ E+
Sbjct: 3326893 AIPVPFGTAHECLFGAGHLKAGETVLVQAGAGAVGVAAIQLAKRAGATVLATTSSDERLE 3326714
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
+G D I+Y +++ KGVD V D VG AT
Sbjct: 3326713 RLKPLG-LDHGINYSRDDVVTEVMKLTGGKGVDLVVDPVGGATL 3326585
Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats.
Identities = 54/168 (32%), Positives = 77/168 (45%), Gaps = 8/168 (4%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E +G V+ +G GV+ +G+RV G G A ++ + +PD + +AA
Sbjct: 5228080 GGEVSGVVLALGEGVTTLKVGQRVLASTGHGGMAEKVALDAMRCTP---IPDNMPFDEAA 5227910
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A + T++Y + G T++V AAGG GL ++ K GARVI C EK
Sbjct: 5227909 AFILTYGTSYYALKDRGHLKAGETLLVLGAAGGVGLAAVELGKAAGARVIAACSSQEKVD 5227730
Query: 121 LATSVGRADVVIDYVATP-------DWPPLVR-AAAPKGVDAVYDGVG 160
LA G AD + Y P L++ A P G D YD VG
Sbjct: 5227729 LAIKHG-ADAGVVYPRGPFDKDGQKALATLIKEACGPNGWDVAYDAVG 5227589
Score = 40.0 bits (92), Expect = 0.27, Method: Composition-based stats.
Identities = 53/165 (32%), Positives = 71/165 (43%), Gaps = 3/165 (1%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSE--TMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQ 58
G + AG V +GPGV + G G G G+ A + V A L P + Q
Sbjct: 2595804 GLDLAGEVEALGPGVQDFAKGQGVYGLVGGVGGLQGAQAQYVAVDARLLARRPRTLDARQ 2595983
Query: 59 AAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEK 118
AAA+ +TA + PG +V+V AGG G + Q+A +GARV G E
Sbjct: 2595984 AAALPLVAITAWEGLVDRAQVKPGHSVLVQGGAGGVGHMAVQIALAKGARVYATALGEED 2596163
Query: 119 AMLATSVGRADVVIDYV-ATPDWPPLVRAAAPKGVDAVYDGVGQA 162
++G V ID A PD+ L G + VYD G A
Sbjct: 2596164 LAYLRALGA--VAIDGARAVPDY--LEEHTDGTGFEVVYDTGGGA 2596286
Score = 39.3 bits (90), Expect = 0.40, Method: Composition-based stats.
Identities = 44/163 (26%), Positives = 64/163 (39%), Gaps = 25/163 (15%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAY-------------------------FGGVGCTGS 35
G EGAG VV VG GV+ G RV G GS
Sbjct: 2540026 GHEGAGHVVAVGAGVTHVREGDRVGVPWLYSACGHCVHCLGGWETLCELQQNTGYSVNGS 2540205
Query: 36 YAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTG 95
+A + + + + +PD V + A VLC G+T + + + PG V + + GG G
Sbjct: 2540206 FADYVLADPNYVGHLPDNVGFVEIAPVLCAGVTVYKGLKMT-EAKPGDWVAI-SGVGGLG 2540379
Query: 96 LLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATP 138
+ Q A+ G V + +K LA ++G V A P
Sbjct: 2540380 HMAVQYARAMGLNVAAVDIDDQKLALARALGATVTVNALHADP 2540508
Score = 37.4 bits (85), Expect = 1.4, Method: Composition-based stats.
Identities = 53/169 (31%), Positives = 75/169 (44%), Gaps = 7/169 (4%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V +G GV +G+RV+ GS A +V A VPD + +AA
Sbjct: 2044435 GSELAGVVRAIGEGVVSPRVGERVS---ASLPFGSMAEVVLVPADRCTVVPDAMPFEEAA 2044605
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A T ++ + + G T++V A GG GL ++ K GARV+ +K
Sbjct: 2044606 AFQVTYGTVYHALVARAGMRLGETLLVLGAGGGVGLAAVELGKTLGARVVAAASSQDKLD 2044785
Query: 121 LATSVGRADVVI------DYVATPDWPPLVRAA-APKGVDAVYDGVGQA 162
A ++G VV+ D + VRAA +G D V D VG A
Sbjct: 2044786 AARAMGADAVVLYPRAFEDVAQARAFTEAVRAACGGEGADVVVDPVGGA 2044932
>gb|CP001280.1| Methylocella silvestris BL2, complete genome
Length = 4305430
Score = 95.9 bits (237), Expect = 4e-18, Method: Composition-based stats.
Identities = 70/165 (42%), Positives = 94/165 (56%), Gaps = 1/165 (0%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G+E AG VV VG GV G RVA + G YA +V A L+++P ++ AA
Sbjct: 4205397 GDESAGEVVAVGKGVKSVKAGDRVA---ALSTFGGYAEARLVNADRLIKLPKSISYETAA 4205567
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A+L +GLTA YL+ ++ G V++HAAAGG GL++CQ AK GA+VIG G EKA
Sbjct: 4205568 AMLLKGLTAQYLLRQTFKVKKGHRVLIHAAAGGVGLILCQWAKALGAQVIGTVGTLEKAA 4205747
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGV-DAVYDGVGQATF 164
LA G V++ D+ V+ + D VYDGVG+ATF
Sbjct: 4205748 LAKKAGAKHVIL--YRNEDFAARVKEITKDELCDVVYDGVGKATF 4205876
Score = 57.8 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 34/84 (40%), Positives = 50/84 (59%)
Frame = -3
Query: 81 PGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDW 140
PG TVVV AA G G LV Q+A+++GAR +G+ GG +K A D ID+ +P +
Sbjct: 420284 PGETVVVAAATGPVGSLVGQIARIKGARAVGVAGGPDKCAYALDTLGFDAAIDH-RSPTF 420108
Query: 141 PPLVRAAAPKGVDAVYDGVGQATF 164
+ AA P+G+D ++ VG A +
Sbjct: 420107 ADDLAAACPRGIDIYFELVGGAVW 420036
Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 55/166 (33%), Positives = 77/166 (46%), Gaps = 1/166 (0%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG +V +G GV+ G V G +G YA + V A L P G++ +AA
Sbjct: 92777 GLEVAGRIVALGEGVTGFEAGDSVCALLG---SGGYADYAVAAAPLCLPAPQGLSFEEAA 92947
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A+ T + V + G T +VH + G G + Q+AK GA VI G K
Sbjct: 92948 ALPENVFTVYDNVFTRGRLAAGETFLVHGGSSGIGSIAIQLAKASGAIVIATAGSDAKCA 93127
Query: 121 LATSVGRADVVIDYVATPDWPPLVRA-AAPKGVDAVYDGVGQATFA 165
++G AD+ I+Y T D+ +A A GVD + D VG A
Sbjct: 93128 FCRTLG-ADLSINY-KTQDFAAETKAFAGEHGVDVILDMVGAPYLA 93259
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 47/130 (36%), Positives = 63/130 (48%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V +G GV+ LG V F G G+ A+ V A+ VP G++ A
Sbjct: 2993288 GLECAGHVAAIGQGVTGFKLGDAVVAFAG----GALASHVTVDANLAAMVPAGLSLEAAT 2993455
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+ LTA+Y + PG V++H AG GL Q+A+ RGARVI G EK
Sbjct: 2993456 TIPVAFLTAYYALMGCARLAPGEWVLIHGGAGAVGLAALQIARWRGARVIASAGSVEKRD 2993635
Query: 121 LATSVGRADV 130
L ++G V
Sbjct: 2993636 LVRTLGAEHV 2993665
Score = 55.5 bits (132), Expect = 5e-06, Method: Composition-based stats.
Identities = 56/181 (30%), Positives = 72/181 (39%), Gaps = 19/181 (10%)
Frame = +1
Query: 3 EGAGTVVKVGPGVSETMLGKRV------------------AYFGGVGCTGSYAAFTVVQA 44
+GAG V VGP V+E +G V A G G G + A
Sbjct: 3316567 DGAGEVSAVGPDVTEFAVGDHVVSTFFPTWLEDEPIVDSFATVPGDGVDGYAREIVTLPA 3316746
Query: 45 SALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKL 104
+A P G + +AA + GLTA + PG V+V GG + Q AKL
Sbjct: 3316747 TAFTHAPKGYSHVEAATLTTAGLTAWRALFVDDSLKPGDVVLVQGT-GGVSIFALQFAKL 3316923
Query: 105 RGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRA-AAPKGVDAVYDGVGQAT 163
GARVI EK ++G AD VI+Y W R +GVD V + G T
Sbjct: 3316924 AGARVIATSSSDEKLERLKAMG-ADHVINYKTDSAWGETARRLTGGRGVDHVVEVGGPLT 3317100
Query: 164 F 164
Sbjct: 3317101 L 3317103
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 52/164 (31%), Positives = 68/164 (41%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G + AG V +VG GV++ +G RV FG A ++ A + + G DA A
Sbjct: 960237 GRDVAGVVDEVGEGVTDVAVGDRV--FGVSDDGAGAAELALLTYRAPIPLSLGFVDAAAL 960410
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
V + T G G T++++ AAGG G Q+A RGARVIG A
Sbjct: 960411 PVALETATRSL---DELGVGAGITLLINGAAGGIGSTAVQLAIARGARVIGAASAANHDY 960581
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
L D +A VR AP GVDA D G
Sbjct: 960582 LRLLGAEPVTYGDGMAER-----VRTLAPDGVDAALDVAGSGVL 960698
Score = 39.3 bits (90), Expect = 0.39, Method: Composition-based stats.
Identities = 31/95 (32%), Positives = 36/95 (37%), Gaps = 25/95 (26%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRV-------------------------AYFGGVGCTGS 35
G E AG V ++G GVS LG RV A F G G
Sbjct: 2659008 GHEIAGVVTQLGAGVSRFKLGDRVGVPWLGWTCGTCKFCRSGRENLCDQARFTGYDIDGG 2658829
Query: 36 YAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAH 70
YA FT +PD TD AA +LC GL +
Sbjct: 2658828 YAQFTRADERFAFRLPDDYTDIDAAPLLCAGLIGY 2658724
>emb|Y08624.1|VUTED2 V.unguiculata mRNA for Ted2 protein
Length = 1146
Score = 95.9 bits (237), Expect = 4e-18, Method: Composition-based stats.
Identities = 65/168 (38%), Positives = 90/168 (53%), Gaps = 4/168 (2%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E G V VG G++ +G VAY G GSYA ++ A+ ++ VP + AA
Sbjct: 273 GMEAVGVVTAVGAGLTGRQVGDLVAYAGQP--MGSYAEEQILPANKVVPVPSSIDPPIAA 446
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+++ +G+T H+LV + PG T++VHAAAGG G L+CQ A GA VIG EKA
Sbjct: 447 SIMLKGMTTHFLVRRCFKVEPGHTILVHAAAGGVGSLLCQWANALGATVIGTVSNKEKAA 626
Query: 121 LATSVGRADVVI----DYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
A G V+I D+VA + + GV+ VYD VG+ TF
Sbjct: 627 QAKEDGCHHVIIYKEEDFVARVN-----EITSGNGVEVVYDSVGKDTF 755
>emb|AM747721.1| Burkholderia cenocepacia J2315 chromosome 2, complete genome
Length = 3217062
Score = 95.9 bits (237), Expect = 4e-18, Method: Composition-based stats.
Identities = 71/160 (44%), Positives = 91/160 (56%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG + VGPGV+E + G+RVAY G TGSYA+ + A +L +PDG++D A
Sbjct: 2026342 GVEAAGVIDAVGPGVTELVPGQRVAYAGMP--TGSYASLRTMPAERVLPIPDGLSDEAAV 2026169
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A L +G+T + L+ G G TV+VHAAAGG GLL Q A+ GARVIG G A KA
Sbjct: 2026168 AGLLKGITVYMLLHRVRQVGAGDTVLVHAAAGGVGLLATQWARALGARVIGTVGSAAKAA 2025989
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
L + G A+ V+DY GVD DG+G
Sbjct: 2025988 LVRAHG-AEAVVDYREADFVAAARAFGGGAGVDYAIDGIG 2025872
Score = 66.6 bits (161), Expect = 2e-09, Method: Composition-based stats.
Identities = 50/133 (37%), Positives = 69/133 (51%), Gaps = 8/133 (6%)
Frame = +2
Query: 36 YAAFTVVQASALLEVPDGVTDAQAAAVL--------CQGLTAHYLVDSSYPCGPGSTVVV 87
YA QA+ L+++P AQ+ L GLTA+Y + P PG T+VV
Sbjct: 927245 YAVVPAEQAAQLVKLP-----AQSGLPLPTLLGACGMSGLTAYYGLTDIAPVQPGETLVV 927409
Query: 88 HAAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAA 147
AAAG G + Q+ K+ GARV+GI GGA+K T D +DY A D+ ++AA
Sbjct: 927410 SAAAGSVGSIAGQIGKIHGARVVGIAGGADKCRYLTDTLGFDAAVDYKAD-DFRQQLKAA 927586
Query: 148 APKGVDAVYDGVG 160
P GV ++ VG
Sbjct: 927587 TPDGVHVNFENVG 927625
Score = 62.0 bits (149), Expect = 7e-08, Method: Composition-based stats.
Identities = 54/158 (34%), Positives = 73/158 (46%), Gaps = 1/158 (0%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRV-AYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQA 59
G E AG VV VG V+ +G RV A G G YA + V S L +PDG+ A+A
Sbjct: 155337 GLEIAGEVVAVGRDVTRFAVGDRVCALIPG----GGYAEYAVANESNTLAIPDGLGMAEA 155504
Query: 60 AAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKA 119
AA+ +T + PG +V++H A G G +AK GA I G+E
Sbjct: 155505 AALPETFMTVWLNLFQRGRLSPGESVLIHGGASGIGTTATMLAKAFGASTIITTVGSEAQ 155684
Query: 120 MLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYD 157
A+ AD+ IDY + + R KGVD + D
Sbjct: 155685 RDASMRLGADLAIDYRSEDFVEAVARFTGGKGVDVIVD 155798
Score = 45.1 bits (105), Expect = 0.008, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 37/65 (56%)
Frame = +1
Query: 100 QMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGV 159
Q+AKL+G RV+G+ GGA+K T D +D+ P + ++ A P G+D ++ V
Sbjct: 1706392 QIAKLKGCRVVGVAGGADKCAYVTGTLGFDACVDH-HDPAFAAKLKDACPNGIDVYFENV 1706568
Query: 160 GQATF 164
G A F
Sbjct: 1706569 GGAVF 1706583
Score = 42.4 bits (98), Expect = 0.055, Method: Composition-based stats.
Identities = 60/195 (30%), Positives = 78/195 (40%), Gaps = 31/195 (15%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAY------------------------FGGVGCTGSY 36
G E GTVV+VG GV+ G RVA F G+ G
Sbjct: 39168 GHEFCGTVVEVGAGVTTLRAGDRVAVEPEYRCSQCAYCRAGSYNLCVSMGFAGLMGDGGM 38989
Query: 37 AAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGL 96
A F VV A L +PDGV+ QAA + + H L G V G GL
Sbjct: 38988 ADFAVVPAYMLHRLPDGVSLEQAAVMEPAAVALHALRRGELRLGETCAVF---GLGPIGL 38818
Query: 97 LVCQMAKLRGA-RVIGICGGAEKAMLATSVGRADVV----IDYVATPDWPPLVRAAAPK- 150
L+ +AK +GA ++ + E+ AT G +D A D +RA
Sbjct: 38817 LLIMLAKRQGATTIVAVDVSPERLAAATRFGATHAFDARGLDASALQD---AIRATTGGL 38647
Query: 151 GVDAVYDGVG-QATF 164
GVDA ++ G QATF
Sbjct: 38646 GVDASFEAAGLQATF 38602
Score = 40.8 bits (94), Expect = 0.14, Method: Composition-based stats.
Identities = 29/94 (30%), Positives = 47/94 (50%)
Frame = +1
Query: 14 GVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLV 73
GV G+RV +FG G+ A T+ + + +PD + D AAA+ G+++ +
Sbjct: 1526980 GVGRLDDGRRVYFFGAPAPFGAMAERTIAPDTQCVPLPDALDDVTAAAIAIPGMSSWAAL 1527159
Query: 74 DSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGA 107
G TV+V+ A G +G L ++AK GA
Sbjct: 1527160 TERARFVAGETVLVNGATGTSGRLAVRIAKHLGA 1527261
Score = 36.6 bits (83), Expect = 2.6, Method: Composition-based stats.
Identities = 36/134 (26%), Positives = 55/134 (41%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V+ VG V G V + G YA + V + +P G+ +AA
Sbjct: 2344969 GLEIAGEVIDVGSAVKRFKRGDVVC---ALVTGGGYAEYAVADHRVTMTLPKGLGVVEAA 2345139
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A+ +T + G +V++H A G G +AK GA + G+E
Sbjct: 2345140 AMPETFMTVWLNLFQRGKLQAGESVLIHGGASGIGTTATMLAKAFGASKVMTTVGSEVHR 2345319
Query: 121 LATSVGRADVVIDY 134
A+ A+ I+Y
Sbjct: 2345320 EASLRLGANHAINY 2345361
Score = 35.8 bits (81), Expect = 4.3, Method: Composition-based stats.
Identities = 41/158 (25%), Positives = 61/158 (38%), Gaps = 25/158 (15%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAY-------------------------FGGVGCTGS 35
G EG G V VG GV+ G RV G GS
Sbjct: 1748092 GHEGVGIVAAVGAGVTHVREGDRVGVPWLYTACGHCEYCCTGWETLCHGQQNTGYSVNGS 1747913
Query: 36 YAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTG 95
YA + + + ++P V + A +LC G+T + + + PG + + + GG G
Sbjct: 1747912 YAEYVLADPDYVGQLPAQVAFDEIAPILCAGVTVYKGIRVT-DTRPGQWLAI-SGIGGLG 1747739
Query: 96 LLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVID 133
+ Q A+ G V I +K LA +G A + ID
Sbjct: 1747738 HVAVQYARAMGLHVAAIDISPDKLALARQLG-AHLTID 1747628
Score = 35.0 bits (79), Expect = 8.6, Method: Composition-based stats.
Identities = 43/162 (26%), Positives = 64/162 (39%), Gaps = 2/162 (1%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCT--GSYAAFTVVQASALLEVPDGVTDAQ 58
G E +G V VG V+ G V+ G Y V A A+++ PD ++ +
Sbjct: 754478 GYEASGIVAAVGRNVTAFAEGDAVSVVPAFSFADYGMYGEVVNVPAHAVVKHPDSLSFEE 754299
Query: 59 AAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEK 118
AAA +TA+ + G V++ AA+ G Q+A GA I + G K
Sbjct: 754298 AAATWMMFVTAYGALIELGGLERGDAVLIGAASSSVGQAAIQVANQVGAVPIALTRGESK 754119
Query: 119 AMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
G V+ V +P A P+ V + GVG
Sbjct: 754118 RQALLDAGARHVI---VGSP-------ADLPRQVAEITGGVG 754023
>gb|CP000720.1| Yersinia pseudotuberculosis IP 31758, complete genome
Length = 4723306
Score = 95.9 bits (237), Expect = 4e-18, Method: Composition-based stats.
Identities = 64/164 (39%), Positives = 88/164 (53%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V KVG VS +G RV Y G+Y+ V A + +P+ ++ QAA
Sbjct: 4244805 GTEAAGIVSKVGAAVSSVKVGDRVVY--AQSALGAYSEVHNVPADKIALLPEQISFEQAA 4244978
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A +GLTA+YL+ ++ PG + HAAAGG GL+ CQ AK GA++IG G EKA
Sbjct: 4244979 ASFLKGLTAYYLLRQTHEIKPGEVFLFHAAAGGVGLIACQWAKALGAKLIGTVGSDEKAQ 4245158
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
LA + G A I+Y + + V VYD VG++T+
Sbjct: 4245159 LAKAAG-AWATINYRTENIAQRVAELTEGEKVGVVYDSVGKSTW 4245287
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 44/157 (28%), Positives = 69/157 (43%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG VV + V+ +G V G+ G YA + V+ + L +P G++ +AA
Sbjct: 1887097 GLEVAGEVVAIAADVTRFKIGDNVC---GLIAGGGYAQYCVIHETNALPIPQGLSAIEAA 1886927
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A+ T + G TV++H + G G ++K GA + + G+E+
Sbjct: 1886926 ALPETFFTVWTNLFQRGHFTAGETVLIHGGSSGIGTTAILLSKAFGAATVIVTVGSEEKR 1886747
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYD 157
A AD+ I+Y RA A KG D + D
Sbjct: 1886746 QACLHLGADIAINYHTQDFVAETKRATAGKGADVIVD 1886636
>gb|CP000668.1| Yersinia pestis Pestoides F, complete genome
Length = 4517345
Score = 95.9 bits (237), Expect = 4e-18, Method: Composition-based stats.
Identities = 64/164 (39%), Positives = 88/164 (53%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V KVG VS +G RV Y G+Y+ V A + +P+ ++ QAA
Sbjct: 4198083 GTEAAGIVSKVGAAVSSVKVGDRVVY--AQSALGAYSEVHNVPADKIALLPEQISFEQAA 4198256
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A +GLTA+YL+ ++ PG + HAAAGG GL+ CQ AK GA++IG G EKA
Sbjct: 4198257 ASFLKGLTAYYLLRQTHEIKPGEVFLFHAAAGGVGLIACQWAKALGAKLIGTVGSDEKAQ 4198436
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
LA + G A I+Y + + V VYD VG++T+
Sbjct: 4198437 LAKAAG-AWATINYRTENIAQRVAELTEGEKVGVVYDSVGKSTW 4198565
Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 44/157 (28%), Positives = 68/157 (43%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG VV V+ +G V G+ G YA + V+ + L +P G++ +AA
Sbjct: 2030527 GLEVAGEVVATAADVTRFKIGDNVC---GLIAGGGYAQYCVIHETNALPIPQGLSAIEAA 2030697
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A+ T + G TV++H + G G ++K GA + + G+E+
Sbjct: 2030698 ALPETFFTVWTNLFQRGHFTAGETVLIHGGSSGIGTTAILLSKAFGAATVIVTVGSEEKR 2030877
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYD 157
A AD+ I+Y RA A KG D + D
Sbjct: 2030878 QACLNLGADIAINYHTQDFVAETKRATAGKGADVIVD 2030988
>emb|AL590842.1| Yersinia pestis CO92 complete genome
Length = 4653728
Score = 95.9 bits (237), Expect = 4e-18, Method: Composition-based stats.
Identities = 64/164 (39%), Positives = 88/164 (53%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V KVG VS +G RV Y G+Y+ V A + +P+ ++ QAA
Sbjct: 325982 GTEAAGIVSKVGAAVSSVKVGDRVVY--AQSALGAYSEVHNVPADKIALLPEQISFEQAA 325809
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A +GLTA+YL+ ++ PG + HAAAGG GL+ CQ AK GA++IG G EKA
Sbjct: 325808 ASFLKGLTAYYLLRQTHEIKPGEVFLFHAAAGGVGLIACQWAKALGAKLIGTVGSDEKAQ 325629
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
LA + G A I+Y + + V VYD VG++T+
Sbjct: 325628 LAKAAG-AWATINYRTENIAQRVAELTEGEKVGVVYDSVGKSTW 325500
Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 44/157 (28%), Positives = 68/157 (43%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG VV V+ +G V G+ G YA + V+ + L +P G++ +AA
Sbjct: 1879430 GLEVAGEVVATAADVTRFKIGDNVC---GLIAGGGYAQYCVIHETNALPIPQGLSAIEAA 1879260
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A+ T + G TV++H + G G ++K GA + + G+E+
Sbjct: 1879259 ALPETFFTVWTNLFQRGHFTAGETVLIHGGSSGIGTTAILLSKAFGAATVIVTVGSEEKR 1879080
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYD 157
A AD+ I+Y RA A KG D + D
Sbjct: 1879079 QACLNLGADIAINYHTQDFVAETKRATAGKGADVIVD 1878969
>gb|AE017042.1| Yersinia pestis biovar Microtus str. 91001, complete genome
Length = 4595065
Score = 95.9 bits (237), Expect = 4e-18, Method: Composition-based stats.
Identities = 64/164 (39%), Positives = 88/164 (53%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V KVG VS +G RV Y G+Y+ V A + +P+ ++ QAA
Sbjct: 506988 GTEAAGIVSKVGAAVSSVKVGDRVVY--AQSALGAYSEVHNVPADKIALLPEQISFEQAA 506815
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A +GLTA+YL+ ++ PG + HAAAGG GL+ CQ AK GA++IG G EKA
Sbjct: 506814 ASFLKGLTAYYLLRQTHEIKPGEVFLFHAAAGGVGLIACQWAKALGAKLIGTVGSDEKAQ 506635
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
LA + G A I+Y + + V VYD VG++T+
Sbjct: 506634 LAKAAG-AWATINYRTENIAQRVAELTEGEKVGVVYDSVGKSTW 506506
Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 44/157 (28%), Positives = 68/157 (43%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG VV V+ +G V G+ G YA + V+ + L +P G++ +AA
Sbjct: 1975694 GLEVAGEVVATAADVTRFKIGDNVC---GLIAGGGYAQYCVIHETNALPIPQGLSAIEAA 1975524
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A+ T + G TV++H + G G ++K GA + + G+E+
Sbjct: 1975523 ALPETFFTVWTNLFQRGHFTAGETVLIHGGSSGIGTTAILLSKAFGAATVIVTVGSEEKR 1975344
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYD 157
A AD+ I+Y RA A KG D + D
Sbjct: 1975343 QACLNLGADIAINYHTQDFVAETKRATAGKGADVIVD 1975233
>gb|DQ771921.1| Synthetic construct Yersinia pestis clone FLH0137142.01X qor gene,
complete sequence
Length = 1053
Score = 95.9 bits (237), Expect = 4e-18, Method: Composition-based stats.
Identities = 64/164 (39%), Positives = 88/164 (53%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V KVG VS +G RV Y G+Y+ V A + +P+ ++ QAA
Sbjct: 253 GTEAAGIVSKVGAAVSSVKVGDRVVY--AQSALGAYSEVHNVPADKIALLPEQISFEQAA 426
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A +GLTA+YL+ ++ PG + HAAAGG GL+ CQ AK GA++IG G EKA
Sbjct: 427 ASFLKGLTAYYLLRQTHEIKPGEVFLFHAAAGGVGLIACQWAKALGAKLIGTVGSDEKAQ 606
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
LA + G A I+Y + + V VYD VG++T+
Sbjct: 607 LAKAAG-AWATINYRTENIAQRVAELTEGEKVGVVYDSVGKSTW 735
>gb|CP000308.1| Yersinia pestis Antiqua, complete genome
Length = 4702289
Score = 95.9 bits (237), Expect = 4e-18, Method: Composition-based stats.
Identities = 64/164 (39%), Positives = 88/164 (53%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V KVG VS +G RV Y G+Y+ V A + +P+ ++ QAA
Sbjct: 4467519 GTEAAGIVSKVGAAVSSVKVGDRVVY--AQSALGAYSEVHNVPADKIALLPEQISFEQAA 4467692
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A +GLTA+YL+ ++ PG + HAAAGG GL+ CQ AK GA++IG G EKA
Sbjct: 4467693 ASFLKGLTAYYLLRQTHEIKPGEVFLFHAAAGGVGLIACQWAKALGAKLIGTVGSDEKAQ 4467872
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
LA + G A I+Y + + V VYD VG++T+
Sbjct: 4467873 LAKAAG-AWATINYRTENIAQRVAELTEGEKVGVVYDSVGKSTW 4468001
Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 44/157 (28%), Positives = 68/157 (43%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG VV V+ +G V G+ G YA + V+ + L +P G++ +AA
Sbjct: 2104932 GLEVAGEVVATAADVTRFKIGDNVC---GLIAGGGYAQYCVIHETNALPIPQGLSAIEAA 2105102
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A+ T + G TV++H + G G ++K GA + + G+E+
Sbjct: 2105103 ALPETFFTVWTNLFQRGHFTAGETVLIHGGSSGIGTTAILLSKAFGAATVIVTVGSEEKR 2105282
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYD 157
A AD+ I+Y RA A KG D + D
Sbjct: 2105283 QACLNLGADIAINYHTQDFVAETKRATAGKGADVIVD 2105393
>gb|CP000305.1| Yersinia pestis Nepal516, complete genome
Length = 4534590
Score = 95.9 bits (237), Expect = 4e-18, Method: Composition-based stats.
Identities = 64/164 (39%), Positives = 88/164 (53%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V KVG VS +G RV Y G+Y+ V A + +P+ ++ QAA
Sbjct: 3819615 GTEAAGIVSKVGAAVSSVKVGDRVVY--AQSALGAYSEVHNVPADKIALLPEQISFEQAA 3819788
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A +GLTA+YL+ ++ PG + HAAAGG GL+ CQ AK GA++IG G EKA
Sbjct: 3819789 ASFLKGLTAYYLLRQTHEIKPGEVFLFHAAAGGVGLIACQWAKALGAKLIGTVGSDEKAQ 3819968
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
LA + G A I+Y + + V VYD VG++T+
Sbjct: 3819969 LAKAAG-AWATINYRTENIAQRVAELTEGEKVGVVYDSVGKSTW 3820097
Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 44/157 (28%), Positives = 68/157 (43%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG VV V+ +G V G+ G YA + V+ + L +P G++ +AA
Sbjct: 2239339 GLEVAGEVVATAADVTRFKIGDNVC---GLIAGGGYAQYCVIHETNALPIPQGLSAIEAA 2239509
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A+ T + G TV++H + G G ++K GA + + G+E+
Sbjct: 2239510 ALPETFFTVWTNLFQRGHFTAGETVLIHGGSSGIGTTAILLSKAFGAATVIVTVGSEEKR 2239689
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYD 157
A AD+ I+Y RA A KG D + D
Sbjct: 2239690 QACLNLGADIAINYHTQDFVAETKRATAGKGADVIVD 2239800
>gb|AE009952.1| Yersinia pestis KIM, complete genome
Length = 4600755
Score = 95.9 bits (237), Expect = 4e-18, Method: Composition-based stats.
Identities = 64/164 (39%), Positives = 88/164 (53%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V KVG VS +G RV Y G+Y+ V A + +P+ ++ QAA
Sbjct: 652131 GTEAAGIVSKVGAAVSSVKVGDRVVY--AQSALGAYSEVHNVPADKIALLPEQISFEQAA 651958
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A +GLTA+YL+ ++ PG + HAAAGG GL+ CQ AK GA++IG G EKA
Sbjct: 651957 ASFLKGLTAYYLLRQTHEIKPGEVFLFHAAAGGVGLIACQWAKALGAKLIGTVGSDEKAQ 651778
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
LA + G A I+Y + + V VYD VG++T+
Sbjct: 651777 LAKAAG-AWATINYRTENIAQRVAELTEGEKVGVVYDSVGKSTW 651649
Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 44/157 (28%), Positives = 68/157 (43%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG VV V+ +G V G+ G YA + V+ + L +P G++ +AA
Sbjct: 1994754 GLEVAGEVVATAADVTRFKIGDNVC---GLIAGGGYAQYCVIHETNALPIPQGLSAIEAA 1994584
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A+ T + G TV++H + G G ++K GA + + G+E+
Sbjct: 1994583 ALPETFFTVWTNLFQRGHFTAGETVLIHGGSSGIGTTAILLSKAFGAATVIVTVGSEEKR 1994404
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYD 157
A AD+ I+Y RA A KG D + D
Sbjct: 1994403 QACLNLGADIAINYHTQDFVAETKRATAGKGADVIVD 1994293
>ref|XM_002313809.1| Populus trichocarpa predicted protein, mRNA
Length = 2415
Score = 95.9 bits (237), Expect = 4e-18, Method: Composition-based stats.
Identities = 65/164 (39%), Positives = 85/164 (51%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E G + VG V++ +G A GSY FTVV A +L VP D +
Sbjct: 1072 GFEAVGIIAAVGESVTDLKVGTPAALM----TFGSYTEFTVVPAKHILPVPR--PDPEVV 1233
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A+L G+TA ++ G VVV AAAGGTG Q+AKL G V+ CGG EKA+
Sbjct: 1234 ALLTSGMTASIALEKCGQMKSGEAVVVTAAAGGTGQFAVQLAKLAGNTVVATCGGNEKAI 1413
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
L +G D VIDY A D +++ PKG+D +Y+ VG F
Sbjct: 1414 LLKQLG-VDRVIDYKAE-DIKTVLKKEFPKGIDIIYESVGGDMF 1539
>gb|CP000959.1| Burkholderia cenocepacia MC0-3 chromosome 2, complete sequence
Length = 3213911
Score = 95.5 bits (236), Expect = 5e-18, Method: Composition-based stats.
Identities = 72/160 (45%), Positives = 91/160 (56%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG + VGPGV+E + G+RVAY G TGSYA+ + A +L +PDG++D AA
Sbjct: 2777843 GVEAAGVIDAVGPGVTEFVPGQRVAYAGMP--TGSYASLRTMPAERVLPIPDGLSDEAAA 2778016
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A L +G+T + L+ G G TV+VHAAAGG GLL Q A GARVIG G A KA
Sbjct: 2778017 AGLLKGITVYMLLHRVRQVGAGDTVLVHAAAGGVGLLATQWAHALGARVIGTVGSAAKAA 2778196
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
L + G A+ V+DY GVD DG+G
Sbjct: 2778197 LVRAHG-AEAVVDYREEDFVAAARAFGGGAGVDYAIDGIG 2778313
Score = 94.4 bits (233), Expect = 1e-17, Method: Composition-based stats.
Identities = 68/164 (41%), Positives = 90/164 (54%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G EGAG VV+VG GV+ G RVA+ G+YA + VV A+ L +PD + AA
Sbjct: 2807547 GMEGAGEVVEVGAGVTSVRAGDRVAW---CIVWGAYAEYAVVPAARLARIPDDIAYDLAA 2807717
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A + QG TAHYL+D G T +VHAA+GG G L+ Q+AK RG V A+KA
Sbjct: 2807718 AAIFQGSTAHYLLDDVGKLEAGMTCLVHAASGGIGQLLVQLAKRRGVEVFATTSTADKAA 2807897
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
+A + G AD V+ Y + +GVD V+D VG+ T
Sbjct: 2807898 IARARG-ADHVLLYEHGGFADRIRELTDGRGVDVVFDAVGKTTL 2808026
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 41/95 (43%), Positives = 55/95 (57%)
Frame = -2
Query: 66 GLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSV 125
GLTA+Y + P PG T+VV AAAG G + Q+ K+ GARV+GI GGA+K T
Sbjct: 626053 GLTAYYGLTDIAPVQPGETLVVSAAAGSVGSIAGQIGKIHGARVVGIAGGADKCRYLTET 625874
Query: 126 GRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
D +DY A D+ ++AA P GV ++ VG
Sbjct: 625873 LGFDAAVDYKAD-DFRQQLKAATPDGVHVNFENVG 625772
Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 52/158 (32%), Positives = 73/158 (46%), Gaps = 1/158 (0%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRV-AYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQA 59
G E AG VV VG V+ ++G RV A G G YA + V S L +PDG+ A+A
Sbjct: 1308695 GLEIAGEVVAVGHDVTRFVVGDRVCALIPG----GGYAEYAVANESNTLAIPDGLGMAEA 1308528
Query: 60 AAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKA 119
AA+ +T + G +V++H A G G +AK GA I G++
Sbjct: 1308527 AALPETFMTVWLNLFQRGRFAAGESVLIHGGASGIGTTATMLAKAFGAATIITTVGSDAQ 1308348
Query: 120 MLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYD 157
A+ AD+ IDY + + R KGVD + D
Sbjct: 1308347 RDASMRLGADLAIDYRSEDFVEAVARFTGGKGVDVIVD 1308234
Score = 45.1 bits (105), Expect = 0.009, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 37/65 (56%)
Frame = -3
Query: 100 QMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGV 159
Q+AKL+G RV+G+ GGA+K T D +D+ P + ++ A P G+D ++ V
Sbjct: 3148833 QIAKLKGCRVVGVAGGADKCAYVTGTLGFDACVDH-HDPAFAAKLKDACPNGIDVYFENV 3148657
Query: 160 GQATF 164
G A F
Sbjct: 3148656 GGAVF 3148642
Score = 43.1 bits (100), Expect = 0.027, Method: Composition-based stats.
Identities = 45/147 (30%), Positives = 66/147 (44%), Gaps = 3/147 (2%)
Frame = -2
Query: 14 GVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLV 73
GV G+RV +FG G+ A T+ + + +PD + D AAA+ G+++ +
Sbjct: 108250 GVGRLDDGRRVYFFGAPAPFGAMAERTIAPDTQCVPLPDALDDVTAAAIAIPGMSSWAAL 108071
Query: 74 DSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVID 133
G TV+V+ A G +G L ++AK GA + G A+ A AD V+
Sbjct: 108070 TERARFVAGETVLVNGATGTSGRLAVRIAKHLGAAKVIATGRNAAALQALLSAGADAVVS 107891
Query: 134 YVATPDWPPLVRAAAPK---GVDAVYD 157
D L RA P GVD V D
Sbjct: 107890 L--QQDDVHLARALEPHFRVGVDVVLD 107816
Score = 42.4 bits (98), Expect = 0.051, Method: Composition-based stats.
Identities = 60/195 (30%), Positives = 79/195 (40%), Gaps = 31/195 (15%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAY------------------------FGGVGCTGSY 36
G E GTVV+VG V+ G RVA F G+ G
Sbjct: 1472473 GHEFCGTVVEVGADVTTLRAGDRVAVEPEYRCSQCAYCRSGSYNLCVSMGFAGLMGDGGM 1472652
Query: 37 AAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGL 96
A F VV A L +PDGV+ QAA + + H L G V G GL
Sbjct: 1472653 ADFAVVPAYMLHRLPDGVSLEQAAVMEPAAVALHALRRGELRLGETCAVF---GLGPIGL 1472823
Query: 97 LVCQMAKLRGA-RVIGICGGAEKAMLATSVGRADVV----IDYVATPDWPPLVRAAAPK- 150
L+ +AKL+GA ++ + E+ AT G + +D A D +RAA
Sbjct: 1472824 LLIMLAKLQGATTIVAVDVSPERLAAATRFGATHALDARTLDAAALHD---AIRAATGGL 1472994
Query: 151 GVDAVYDGVG-QATF 164
GVD ++ G QATF
Sbjct: 1472995 GVDTSFEAAGLQATF 1473039
Score = 36.6 bits (83), Expect = 3.1, Method: Composition-based stats.
Identities = 41/158 (25%), Positives = 61/158 (38%), Gaps = 25/158 (15%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAY-------------------------FGGVGCTGS 35
G EG G V VG GV+ G RV G GS
Sbjct: 3051612 GHEGVGIVAAVGAGVTHVREGDRVGVPWLYTACGHCEYCCTGWETLCHGQQNTGYSVNGS 3051791
Query: 36 YAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTG 95
YA + + + ++P V + A +LC G+T + + + PG + + + GG G
Sbjct: 3051792 YAEYVLADPDYVGQLPAQVAFDEIAPILCAGVTVYKGIRVT-DTRPGQWLAI-SGIGGLG 3051965
Query: 96 LLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVID 133
+ Q A+ G V I +K LA +G A + ID
Sbjct: 3051966 HVAVQYARAMGLHVAAIDISPDKLALARQLG-AHLTID 3052076
Score = 36.2 bits (82), Expect = 3.6, Method: Composition-based stats.
Identities = 45/164 (27%), Positives = 66/164 (40%), Gaps = 4/164 (2%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCT--GSYAAFTVVQASALLEVPDGVTDAQ 58
G E +G V VG V+ G V+ G Y V A A+++ PD ++ +
Sbjct: 797836 GYEASGVVAAVGRNVTAFAEGDAVSVVPAFSFADYGMYGEVVNVPARAVVKHPDSLSFEE 798015
Query: 59 AAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEK 118
AAA +TA+ + G V++ AA+ G Q+A GA I + G K
Sbjct: 798016 AAATWMMFVTAYGALIELGGLQRGEAVLIGAASSSVGQAAIQVANRVGAVPIALTRGEAK 798195
Query: 119 AMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDA--VYDGVG 160
G V+ V +P P A G+ A V+D VG
Sbjct: 798196 RQALLDAGAKHVI---VGSPADLPRQVAELTGGIGARLVFDPVG 798318
>gb|CP000518.1| Mycobacterium sp. KMS, complete genome
Length = 5737227
Score = 95.5 bits (236), Expect = 5e-18, Method: Composition-based stats.
Identities = 71/166 (42%), Positives = 94/166 (56%), Gaps = 2/166 (1%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E GT+ VG V+ +G RV VG +YA +TV A + VPDGV A AA
Sbjct: 2595639 GTEVCGTIEAVGDDVAALQVGDRVVTDKAVG---AYAEYTVAPADFVAYVPDGVAPAVAA 2595469
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+ L +G+TAHYL+ S+YP G TV++HA AGG GL++ Q A A+VI +KA
Sbjct: 2595468 SSLLKGMTAHYLIKSTYPVQQGDTVLLHAGAGGVGLILTQWATSLTAKVITTVSTPQKAE 2595289
Query: 121 LATSVGRADVVIDYVATP-DWPPLVR-AAAPKGVDAVYDGVGQATF 164
L+ G + V+DY P ++ +R GV AVYDGVG ATF
Sbjct: 2595288 LSRQAGAIE-VLDYPHDPQEFGARIRDLTGGNGVAAVYDGVGAATF 2595154
Score = 74.7 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 65/166 (39%), Positives = 84/166 (50%), Gaps = 4/166 (2%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G + AG V ++G GV+E +G V GV T S+A + V A L+ PDG++ A
Sbjct: 5652681 GSDVAGVVDEIGSGVTEWTIGDEVL---GVSATPSFAEYAVAGAGDLVRKPDGMSWEVAG 5652851
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
++ G TA Y V G T++VHAAAGG G Q+A RGARV+G
Sbjct: 5652852 SLAGAGGTA-YTVLQKLGVRAGDTLLVHAAAGGVGTFAVQLATARGARVVGTASERNHEY 5653028
Query: 121 L----ATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQA 162
L AT V D +ID VRAAAP+GVDAV D G+
Sbjct: 5653029 LRSIGATPVDYGDGLIDR---------VRAAAPQGVDAVLDASGRG 5653139
Score = 61.6 bits (148), Expect = 9e-08, Method: Composition-based stats.
Identities = 43/98 (43%), Positives = 55/98 (56%), Gaps = 1/98 (1%)
Frame = -3
Query: 66 GLTAHY-LVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATS 124
G TA++ + D P PG TVVV AAAG TG + Q+AK+ GARV+GI GG +K
Sbjct: 2843473 GATAYFGMTDIGRP-RPGETVVVSAAAGATGSVAGQIAKIAGARVVGIAGGPQKCRTVVE 2843297
Query: 125 VGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQA 162
D IDY + D ++ PKGVD +D VG A
Sbjct: 2843296 DFGFDACIDY-RSADLAAALKEHCPKGVDVYFDNVGGA 2843186
Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 56/173 (32%), Positives = 79/173 (45%), Gaps = 22/173 (12%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AGTV + P S M G+RV+ F G +A +++ PDGV DA AA
Sbjct: 114569 GMEVAGTV-RSAPDSSGFMPGQRVSAFT---LMGGFAERVAALPDSVIPTPDGVDDASAA 114736
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIG--------- 111
A+L T + + PG TV+V +AGG G Q+AK +GA VI
Sbjct: 114737 ALLGNYYTMQFALARRGGLTPGETVLVLGSAGGVGTAAIQLAKAQGATVIAMVHRSGAEE 114916
Query: 112 ------------ICGGAEKAMLATSVGRA-DVVIDYVATPDWPPLVRAAAPKG 151
+ G +A+L + GR D+V+D + P + VR AP+G
Sbjct: 114917 FIRGLGADVVLPLTDGWRQAVLDATDGRGVDIVVDPIGGPAFDDAVRVLAPEG 115075
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 66/160 (41%), Positives = 82/160 (51%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AGTV+ +GPG + +G RV G G G++A V A AL + DGV D AA
Sbjct: 4024583 GSEFAGTVIGIGPGTAGFAVGDRVT---GTGMHGAFAEEVAVAADALNPIADGVDDRTAA 4024753
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A TA++ + S PG VVV A GG GL Q+A GARV + AEK
Sbjct: 4024754 ASGVAHRTAYHTLRSVARTQPGDEVVVLGAGGGVGLAAVQLAAHLGARVTAVASSAEKLA 4024933
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
AT G A+ VI++ + P L R A P G AV D VG
Sbjct: 4024934 AATQHG-ANRVINHRSGPLRDAL-RDAVPGGAAAVVDPVG 4025047
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 41/127 (32%), Positives = 60/127 (47%), Gaps = 6/127 (4%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVG------CTGSYAAFTVVQASALLEVPDGV 54
G + AG V ++G GV +R VG G++++ V A L +PDGV
Sbjct: 281271 GGDFAGVVTQLGDGVGSGRAERRDGIKLEVGQRVYGFMQGAFSSRFNVPAQLLAPIPDGV 281092
Query: 55 TDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICG 114
+AA + LTA D + PG V++HAA+GG GL Q+A+ GA V
Sbjct: 281091 GAVEAATIPAAALTARLAFDWA-QLEPGDRVLIHAASGGVGLAAIQLAQQHGAVVFATAS 280915
Query: 115 GAEKAML 121
++A L
Sbjct: 280914 TYKRATL 280894
Score = 49.7 bits (117), Expect = 3e-04, Method: Composition-based stats.
Identities = 36/111 (32%), Positives = 53/111 (47%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E +G + ++G G + +G+RV G+ A F +A L + V AA
Sbjct: 1509375 GHEVSGVIAELGYGTTGLTVGQRVFGVTDWARDGTLAEFVAAEARNLAPLAADVDHPVAA 1509196
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIG 111
A+ GLTA + G TV++H A G G + Q+A+ GARVIG
Sbjct: 1509195 ALPISGLTAWQALFDHAHLTAGQTVLIHGAGGAVGWIAVQLAREAGARVIG 1509043
Score = 45.8 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 44/133 (33%), Positives = 61/133 (45%), Gaps = 1/133 (0%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG VV+ P S G RVA G +G A + + +PD V+ A
Sbjct: 1693418 GAEIAG-VVRSAPAGSGVSPGDRVA--GLTMLSGGMAEVIALAPDRVFPLPDAVSFEAGA 1693248
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGA-RVIGICGGAEKA 119
+L LT H + + G TV+VH AAGG G ++A GA R I + EK
Sbjct: 1693247 GLLFNDLTVHCALRTRGRLAKGETVLVHGAAGGIGTSTLRLAPAFGAGRTIAVVSTEEKI 1693068
Query: 120 MLATSVGRADVVI 132
+A + G +VV+
Sbjct: 1693067 PVAQAAGADEVVL 1693029
Score = 43.5 bits (101), Expect = 0.024, Method: Composition-based stats.
Identities = 56/165 (33%), Positives = 80/165 (48%), Gaps = 10/165 (6%)
Frame = -1
Query: 3 EGAGTVVKVGPGVSETMLGKRVAYFGGVG--CTGSYAAFTVVQASALLEVPDGVTDAQAA 60
+GAG V VG GVSE +G RV F G+ + V+ ++++ +PDGV A
Sbjct: 2516502 DGAGVVDAVGAGVSELSVGDRVWVFMAQHQRPDGTAQEYLVLPVASVVPLPDGVGFEVGA 2516323
Query: 61 AVLCQGLTAH--YLVDSSYPCG------PGSTVVVHAAAGGTGLLVCQMAKLRGARVIGI 112
++ +TAH V +P G+TV+V AG G Q+A+ GARVI
Sbjct: 2516322 SLGVPAITAHRALTVAEGWPSRLRPGALEGATVLVAGGAGAVGHAAIQLARWAGARVITT 2516143
Query: 113 CGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYD 157
+EK LA + G +V +Y A D +R AP GVD V +
Sbjct: 2516142 VSTSEKEALAAAAGAHHIV-NYRAG-DTAAAIREVAPDGVDIVVE 2516014
Score = 42.0 bits (97), Expect = 0.060, Method: Composition-based stats.
Identities = 51/164 (31%), Positives = 71/164 (43%), Gaps = 2/164 (1%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRV-AYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQA 59
G E +G + V VS +G+ V A G G YA V A ++ VP+ V A A
Sbjct: 5312040 GLEVSGVISDVADDVSGWAVGQPVCALLAG----GGYAENVTVPAGQVMPVPESVDLAHA 5312207
Query: 60 AAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKA 119
AA+ T V + G +++H A G G Q+A G RV G A K
Sbjct: 5312208 AALPEVACTVWSNVVMTAALAAGEVLLIHGGASGIGTHAIQVANALGCRVAVTAGSANKL 5312387
Query: 120 MLATSVGRADVVIDYVATPDWPPLVRAAAP-KGVDAVYDGVGQA 162
L +G A+V I+Y D+ +RA G D + D +G A
Sbjct: 5312388 DLCRELG-AEVAINY-RDEDFVERLRAETDGAGADVILDIMGAA 5312513
Score = 42.0 bits (97), Expect = 0.071, Method: Composition-based stats.
Identities = 42/143 (29%), Positives = 66/143 (46%)
Frame = -3
Query: 17 ETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSS 76
E +G RVA G+ G++A F A+ +++P GV + +AAAV TA Y +
Sbjct: 3334120 EHQVGDRVA---GISANGAWATFVTCDANLAVKLPAGVPEDRAAAVPSAHATAWYGLHDL 3333950
Query: 77 YPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVA 136
G V++H+A GG G +AK GA + G E+ + +G + V D +
Sbjct: 3333949 ARIGARDKVLIHSATGGVGQAAVAIAKAAGAEIYATAGSPERRKILRDMG-IEHVYDSRS 3333773
Query: 137 TPDWPPLVRAAAPKGVDAVYDGV 159
T + A GVD V + +
Sbjct: 3333772 TAFADEIREDTAGYGVDIVLNSL 3333704
Score = 41.2 bits (95), Expect = 0.13, Method: Composition-based stats.
Identities = 33/105 (31%), Positives = 53/105 (50%), Gaps = 1/105 (0%)
Frame = +2
Query: 27 FGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAH-YLVDSSYPCGPGSTV 85
+ G G YA FT A+ + +P G TDA+ A +LC G+ + L+ + P PG +
Sbjct: 1199324 YTGWDADGGYAEFTTAPAAFVHRLPGGYTDAELAPLLCAGIIGYRSLLRADLP--PGGRL 1199497
Query: 86 VVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADV 130
++ GG+ + Q+A +GA V + G LA ++G A V
Sbjct: 1199498 GIY-GFGGSAHITAQVALAQGAEVHVMTRGEHARELARALGAASV 1199629
Score = 40.8 bits (94), Expect = 0.15, Method: Composition-based stats.
Identities = 44/143 (30%), Positives = 58/143 (40%), Gaps = 34/143 (23%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVA--------------------YFGGVGCTGSYAAF- 39
G E AG V +VG V++ +G RV Y G G G+Y A
Sbjct: 1996198 GHEIAGVVTEVGAEVTKYKVGDRVGVGCFVDSCRECDNCRAGIEQYCTGSGMVGTYNAVG 1996019
Query: 40 -------------TVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVV 86
VV + +L +PD + AA +LC G+T Y + GPGS V
Sbjct: 1996018 RDGERTQGGYSGAIVVDENYVLRIPDALPLDAAAPLLCAGITT-YSPLRHWNAGPGSRVA 1995842
Query: 87 VHAAAGGTGLLVCQMAKLRGARV 109
V GG G L ++AK GA V
Sbjct: 1995841 V-IGLGGLGHLAVKLAKAMGAEV 1995776
Score = 39.3 bits (90), Expect = 0.40, Method: Composition-based stats.
Identities = 48/151 (31%), Positives = 66/151 (43%), Gaps = 25/151 (16%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVA--YFGG-----VGC------------------TGS 35
G E AGTV ++G GV E +G RVA +FGG + C G
Sbjct: 565615 GHEIAGTVAELGDGVDEFAVGDRVAVGWFGGNCNKCIPCRRGLFMQCVNMQVPSWHYPGG 565794
Query: 36 YAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTG 95
YA VV A+A +PDG++ +AA + C G+T + + G V V G
Sbjct: 565795 YAESVVVPATAPARIPDGLSFVEAAPMGCAGVTTFNGLRQTR-ARAGDLVAVLGIGGLGH 565971
Query: 96 LLVCQMAKLRGARVIGICGGAEKAMLATSVG 126
L V Q A+ G + I GA K A ++G
Sbjct: 565972 LGV-QFARAMGFETVAIARGAAKEDDARALG 566061
Score = 36.2 bits (82), Expect = 3.5, Method: Composition-based stats.
Identities = 47/137 (34%), Positives = 62/137 (45%), Gaps = 9/137 (6%)
Frame = -3
Query: 34 GSYAAFTVVQASALL-EVPDGVTDAQAAAVLC---QGLTAHYLVDSSYPCGPGSTVVVHA 89
G Y + ++ A A++ VPD V+D A+ C Q + VD VVV
Sbjct: 353233 GGYGDYYLLPAGAVVYTVPDVVSDEVASGANCALSQVMYGLERVDQQL-----GEVVVVQ 353069
Query: 90 AAGGTGLLVCQMAKLRG-ARVIGICGGAEKAMLATSVGRADVVIDY---VATPDWPPLVR 145
AG GL +AK RG A+VI I G E+ LAT+ G AD V+D D +VR
Sbjct: 353068 GAGALGLYAVAVAKARGAAKVIAIDGVPERLELATAFG-ADAVVDITEATTVKDRAKIVR 352892
Query: 146 AAAP-KGVDAVYDGVGQ 161
G D V + VG
Sbjct: 352891 TLTDGHGADVVVEVVGH 352841
>gb|CP000384.1| Mycobacterium sp. MCS, complete genome
Length = 5705448
Score = 95.5 bits (236), Expect = 5e-18, Method: Composition-based stats.
Identities = 71/166 (42%), Positives = 94/166 (56%), Gaps = 2/166 (1%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E GT+ VG V+ +G RV VG +YA +TV A + VPDGV A AA
Sbjct: 2577751 GTEVCGTIEAVGDDVAALQVGDRVVTDKAVG---AYAEYTVAPADFVAYVPDGVAPAVAA 2577581
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+ L +G+TAHYL+ S+YP G TV++HA AGG GL++ Q A A+VI +KA
Sbjct: 2577580 SSLLKGMTAHYLIKSTYPVQQGDTVLLHAGAGGVGLILTQWATSLTAKVITTVSTPQKAE 2577401
Query: 121 LATSVGRADVVIDYVATP-DWPPLVR-AAAPKGVDAVYDGVGQATF 164
L+ G + V+DY P ++ +R GV AVYDGVG ATF
Sbjct: 2577400 LSRQAGAIE-VLDYPHDPQEFGARIRDLTGGNGVAAVYDGVGAATF 2577266
Score = 74.7 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 65/166 (39%), Positives = 84/166 (50%), Gaps = 4/166 (2%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G + AG V ++G GV+E +G V GV T S+A + V A L+ PDG++ A
Sbjct: 5615059 GSDVAGVVDEIGSGVTEWTIGDEVL---GVSATPSFAEYAVAGAGDLVRKPDGMSWEVAG 5615229
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
++ G TA Y V G T++VHAAAGG G Q+A RGARV+G
Sbjct: 5615230 SLAGAGGTA-YTVLQKLGVRAGDTLLVHAAAGGVGTFAVQLATARGARVVGTASERNHEY 5615406
Query: 121 L----ATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQA 162
L AT V D +ID VRAAAP+GVDAV D G+
Sbjct: 5615407 LRSIGATPVDYGDGLIDR---------VRAAAPQGVDAVLDASGRG 5615517
Score = 61.6 bits (148), Expect = 9e-08, Method: Composition-based stats.
Identities = 43/98 (43%), Positives = 55/98 (56%), Gaps = 1/98 (1%)
Frame = -2
Query: 66 GLTAHY-LVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATS 124
G TA++ + D P PG TVVV AAAG TG + Q+AK+ GARV+GI GG +K
Sbjct: 2825585 GATAYFGMTDIGRP-RPGETVVVSAAAGATGSVAGQIAKIAGARVVGIAGGPQKCRTVVE 2825409
Query: 125 VGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQA 162
D IDY + D ++ PKGVD +D VG A
Sbjct: 2825408 DFGFDACIDY-RSADLAAALKEHCPKGVDVYFDNVGGA 2825298
Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 56/173 (32%), Positives = 79/173 (45%), Gaps = 22/173 (12%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AGTV + P S M G+RV+ F G +A +++ PDGV DA AA
Sbjct: 107229 GMEVAGTV-RSAPDSSGFMPGQRVSAFT---LMGGFAERVAALPDSVIPTPDGVDDASAA 107396
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIG--------- 111
A+L T + + PG TV+V +AGG G Q+AK +GA VI
Sbjct: 107397 ALLGNYYTMQFALARRGGLTPGETVLVLGSAGGVGTAAIQLAKAQGATVIAMVHRSGAEE 107576
Query: 112 ------------ICGGAEKAMLATSVGRA-DVVIDYVATPDWPPLVRAAAPKG 151
+ G +A+L + GR D+V+D + P + VR AP+G
Sbjct: 107577 FIRGLGADVVLPLTDGWRQAVLDATDGRGVDIVVDPIGGPAFDDAVRVLAPEG 107735
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 66/160 (41%), Positives = 82/160 (51%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AGTV+ +GPG + +G RV G G G++A V A AL + DGV D AA
Sbjct: 3990101 GSEFAGTVIGIGPGTAGFAVGDRVT---GTGMHGAFAEEVAVAADALNPIADGVDDRTAA 3990271
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A TA++ + S PG VVV A GG GL Q+A GARV + AEK
Sbjct: 3990272 ASGVAHRTAYHTLRSVARTQPGDEVVVLGAGGGVGLAAVQLAAHLGARVTAVASSAEKLA 3990451
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
AT G A+ VI++ + P L R A P G AV D VG
Sbjct: 3990452 AATQHG-ANRVINHRSGPLRDAL-RDAVPGGAAAVVDPVG 3990565
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 41/127 (32%), Positives = 60/127 (47%), Gaps = 6/127 (4%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVG------CTGSYAAFTVVQASALLEVPDGV 54
G + AG V ++G GV +R VG G++++ V A L +PDGV
Sbjct: 273931 GGDFAGVVTQLGDGVGSGRAERRDGIKLEVGQRVYGFMQGAFSSRFNVPAQLLAPIPDGV 273752
Query: 55 TDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICG 114
+AA + LTA D + PG V++HAA+GG GL Q+A+ GA V
Sbjct: 273751 GAVEAATIPAAALTARLAFDWA-QLEPGDRVLIHAASGGVGLAAIQLAQQHGAVVFATAS 273575
Query: 115 GAEKAML 121
++A L
Sbjct: 273574 TYKRATL 273554
Score = 49.7 bits (117), Expect = 3e-04, Method: Composition-based stats.
Identities = 36/111 (32%), Positives = 53/111 (47%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E +G + ++G G + +G+RV G+ A F +A L + V AA
Sbjct: 1505067 GHEVSGVIAELGYGTTGLTVGQRVFGVTDWARDGTLAEFVAAEARNLAPLAADVDHPVAA 1504888
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIG 111
A+ GLTA + G TV++H A G G + Q+A+ GARVIG
Sbjct: 1504887 ALPISGLTAWQALFDHAHLTAGQTVLIHGAGGAVGWIAVQLAREAGARVIG 1504735
Score = 45.8 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 44/133 (33%), Positives = 61/133 (45%), Gaps = 1/133 (0%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG VV+ P S G RVA G +G A + + +PD V+ A
Sbjct: 1689259 GAEIAG-VVRSAPAGSGVSPGDRVA--GLTMLSGGMAEVIALAPDRVFPLPDAVSFEAGA 1689089
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGA-RVIGICGGAEKA 119
+L LT H + + G TV+VH AAGG G ++A GA R I + EK
Sbjct: 1689088 GLLFNDLTVHCALRTRGRLAKGETVLVHGAAGGIGTSTLRLAPAFGAGRTIAVVSTEEKI 1688909
Query: 120 MLATSVGRADVVI 132
+A + G +VV+
Sbjct: 1688908 PVAQAAGADEVVL 1688870
Score = 43.5 bits (101), Expect = 0.024, Method: Composition-based stats.
Identities = 56/165 (33%), Positives = 80/165 (48%), Gaps = 10/165 (6%)
Frame = -1
Query: 3 EGAGTVVKVGPGVSETMLGKRVAYFGGVG--CTGSYAAFTVVQASALLEVPDGVTDAQAA 60
+GAG V VG GVSE +G RV F G+ + V+ ++++ +PDGV A
Sbjct: 2497518 DGAGVVDAVGAGVSELSVGDRVWVFMAQHQRPDGTAQEYLVLPVASVVPLPDGVGFEVGA 2497339
Query: 61 AVLCQGLTAH--YLVDSSYPCG------PGSTVVVHAAAGGTGLLVCQMAKLRGARVIGI 112
++ +TAH V +P G+TV+V AG G Q+A+ GARVI
Sbjct: 2497338 SLGVPAITAHRALTVAEGWPSRLRPGALEGATVLVAGGAGAVGHAAIQLARWAGARVITT 2497159
Query: 113 CGGAEKAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYD 157
+EK LA + G +V +Y A D +R AP GVD V +
Sbjct: 2497158 VSTSEKEALAAAAGAHHIV-NYRAG-DTAAAIREVAPDGVDIVVE 2497030
Score = 42.0 bits (97), Expect = 0.060, Method: Composition-based stats.
Identities = 51/164 (31%), Positives = 71/164 (43%), Gaps = 2/164 (1%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRV-AYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQA 59
G E +G + V VS +G+ V A G G YA V A ++ VP+ V A A
Sbjct: 5274418 GLEVSGVISDVADDVSGWAVGQPVCALLAG----GGYAENVTVPAGQVMPVPESVDLAHA 5274585
Query: 60 AAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKA 119
AA+ T V + G +++H A G G Q+A G RV G A K
Sbjct: 5274586 AALPEVACTVWSNVVMTAALAAGEVLLIHGGASGIGTHAIQVANALGCRVAVTAGSANKL 5274765
Query: 120 MLATSVGRADVVIDYVATPDWPPLVRAAAP-KGVDAVYDGVGQA 162
L +G A+V I+Y D+ +RA G D + D +G A
Sbjct: 5274766 DLCRELG-AEVAINY-RDEDFVERLRAETDGAGADVILDIMGAA 5274891
Score = 42.0 bits (97), Expect = 0.071, Method: Composition-based stats.
Identities = 42/143 (29%), Positives = 66/143 (46%)
Frame = -1
Query: 17 ETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSS 76
E +G RVA G+ G++A F A+ +++P GV + +AAAV TA Y +
Sbjct: 3305838 EHQVGDRVA---GISANGAWATFVTCDANLAVKLPAGVPEDRAAAVPSAHATAWYGLHDL 3305668
Query: 77 YPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVA 136
G V++H+A GG G +AK GA + G E+ + +G + V D +
Sbjct: 3305667 ARIGARDKVLIHSATGGVGQAAVAIAKAAGAEIYATAGSPERRKILRDMG-IEHVYDSRS 3305491
Query: 137 TPDWPPLVRAAAPKGVDAVYDGV 159
T + A GVD V + +
Sbjct: 3305490 TAFADEIREDTAGYGVDIVLNSL 3305422
Score = 41.2 bits (95), Expect = 0.13, Method: Composition-based stats.
Identities = 33/105 (31%), Positives = 53/105 (50%), Gaps = 1/105 (0%)
Frame = +1
Query: 27 FGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAH-YLVDSSYPCGPGSTV 85
+ G G YA FT A+ + +P G TDA+ A +LC G+ + L+ + P PG +
Sbjct: 1195015 YTGWDADGGYAEFTTAPAAFVHRLPGGYTDAELAPLLCAGIIGYRSLLRADLP--PGGRL 1195188
Query: 86 VVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADV 130
++ GG+ + Q+A +GA V + G LA ++G A V
Sbjct: 1195189 GIY-GFGGSAHITAQVALAQGAEVHVMTRGEHARELARALGAASV 1195320
Score = 40.8 bits (94), Expect = 0.15, Method: Composition-based stats.
Identities = 44/143 (30%), Positives = 58/143 (40%), Gaps = 34/143 (23%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVA--------------------YFGGVGCTGSYAAF- 39
G E AG V +VG V++ +G RV Y G G G+Y A
Sbjct: 1977214 GHEIAGVVTEVGAEVTKYKVGDRVGVGCFVDSCRECDNCRAGIEQYCTGSGMVGTYNAVG 1977035
Query: 40 -------------TVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVV 86
VV + +L +PD + AA +LC G+T Y + GPGS V
Sbjct: 1977034 RDGERTQGGYSGAIVVDENYVLRIPDALPLDAAAPLLCAGITT-YSPLRHWNAGPGSRVA 1976858
Query: 87 VHAAAGGTGLLVCQMAKLRGARV 109
V GG G L ++AK GA V
Sbjct: 1976857 V-IGLGGLGHLAVKLAKAMGAEV 1976792
Score = 39.3 bits (90), Expect = 0.40, Method: Composition-based stats.
Identities = 48/151 (31%), Positives = 66/151 (43%), Gaps = 25/151 (16%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVA--YFGG-----VGC------------------TGS 35
G E AGTV ++G GV E +G RVA +FGG + C G
Sbjct: 558311 GHEIAGTVAELGDGVDEFAVGDRVAVGWFGGNCNKCIPCRRGLFMQCVNMQVPSWHYPGG 558490
Query: 36 YAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTG 95
YA VV A+A +PDG++ +AA + C G+T + + G V V G
Sbjct: 558491 YAESVVVPATAPARIPDGLSFVEAAPMGCAGVTTFNGLRQTR-ARAGDLVAVLGIGGLGH 558667
Query: 96 LLVCQMAKLRGARVIGICGGAEKAMLATSVG 126
L V Q A+ G + I GA K A ++G
Sbjct: 558668 LGV-QFARAMGFETVAIARGAAKEDDARALG 558757
Score = 36.2 bits (82), Expect = 3.5, Method: Composition-based stats.
Identities = 47/137 (34%), Positives = 62/137 (45%), Gaps = 9/137 (6%)
Frame = -2
Query: 34 GSYAAFTVVQASALL-EVPDGVTDAQAAAVLC---QGLTAHYLVDSSYPCGPGSTVVVHA 89
G Y + ++ A A++ VPD V+D A+ C Q + VD VVV
Sbjct: 345893 GGYGDYYLLPAGAVVYTVPDVVSDEVASGANCALSQVMYGLERVDQQL-----GEVVVVQ 345729
Query: 90 AAGGTGLLVCQMAKLRG-ARVIGICGGAEKAMLATSVGRADVVIDY---VATPDWPPLVR 145
AG GL +AK RG A+VI I G E+ LAT+ G AD V+D D +VR
Sbjct: 345728 GAGALGLYAVAVAKARGAAKVIAIDGVPERLELATAFG-ADAVVDITEATTVKDRAKIVR 345552
Query: 146 AAAP-KGVDAVYDGVGQ 161
G D V + VG
Sbjct: 345551 TLTDGHGADVVVEVVGH 345501
>gb|CP000269.1| Janthinobacterium sp. Marseille, complete genome
Length = 4110251
Score = 95.5 bits (236), Expect = 5e-18, Method: Composition-based stats.
Identities = 66/164 (40%), Positives = 89/164 (54%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G EGAG V VG GV+ G RVAY G G+YA V+ A L+++P+ ++ AA
Sbjct: 624294 GMEGAGVVEAVGAGVTHIRPGDRVAYAGRP--PGAYAEARVLPADVLVKLPEAISFETAA 624467
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A++ QGLT YL ++ G T++ HAAAGG GL+ CQ A+ G +IG G EKA
Sbjct: 624468 AMMLQGLTVQYLFRRTFRLQGGETILFHAAAGGVGLIACQWARALGVTMIGTVGSDEKAE 624647
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
LA + G I+Y + KGV VYD +G+ TF
Sbjct: 624648 LAKAHGCVH-TINYNKENFVERVKEITGGKGVPVVYDSIGKDTF 624776
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 37/118 (31%), Positives = 56/118 (47%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V +G G + +G+RV G+ A + V+A L +P V A
Sbjct: 1090473 GHELAGVVTALGYGTTGLSIGQRVFGLTDWTRDGTLAEYIAVEARNLAPLPGDVDFTVGA 1090294
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEK 118
++ GLTA + G +++ H AAG G +V Q+A+ GA VIG A++
Sbjct: 1090293 SLPMPGLTAWQGLFEHGRLRTGQSIIAHGAAGVVGSMVVQLAREVGAYVIGTGRAADR 1090120
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 36/111 (32%), Positives = 51/111 (45%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V +G G + +G+RV G+ A + ++A L +P V A
Sbjct: 1071275 GHELAGVVTALGYGTTGLSVGQRVFGLADWHRDGTLAEYVAIEARNLAPLPGDVEFTVGA 1071096
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIG 111
++ GLTA + G V+ H AAG G +V Q+A GA VIG
Sbjct: 1071095 SLPISGLTAWQGLFQHGRLQSGQRVLAHGAAGAVGSMVTQLAHEAGAYVIG 1070943
Score = 39.7 bits (91), Expect = 0.33, Method: Composition-based stats.
Identities = 57/167 (34%), Positives = 80/167 (47%), Gaps = 3/167 (1%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRV-AYFGGV-GCTGSYAAFTVVQASALLEVPDGVTDAQ 58
G + AG V +VG VS +G V GG+ G GS A + V A L P ++ +
Sbjct: 2151734 GIDLAGIVEEVGANVSTFKVGDEVYGMTGGIGGVQGSLAEYAAVDADLLAIKPRNISMRE 2151913
Query: 59 AAAVLCQGLTA-HYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAE 117
AAA+ +TA LVD + G G V+VH AGG G + Q+AK A+V ++
Sbjct: 2151914 AAALPLIFITAWEGLVDRAKITG-GKKVLVHGGAGGVGHIAIQIAKAFDAQVFATGSASQ 2152090
Query: 118 KAMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
K ++ + A IDY +T L + G D +YD VG AT
Sbjct: 2152091 KEIIESFGATA---IDYTSTTVAEYLNQYTNGAGFDIIYDTVGGATL 2152222
>emb|BX830697.1|CNS0A0OC Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS15ZE06 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1225
Score = 95.5 bits (236), Expect = 6e-18, Method: Composition-based stats.
Identities = 64/168 (38%), Positives = 92/168 (54%), Gaps = 4/168 (2%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E G VV VG G++ M+G VAY G G+YA ++ A ++ VP + AA
Sbjct: 336 GMEAVGEVVAVGSGLTGRMIGDLVAYAGNP--MGAYAEEQILPADKVVPVPSSIDPIVAA 509
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+++ +G+TA +L+ + PG T++VHAAAGG G L+CQ A GA VIG EKA
Sbjct: 510 SIMLKGMTAQFLLRRCFKVEPGHTILVHAAAGGVGSLLCQWANALGATVIGTVSTNEKAA 689
Query: 121 LATSVGRADVVI----DYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
A G V++ D+V+ + + KGV+ VYD VG+ TF
Sbjct: 690 QAKEDGCHHVIMYKNEDFVSRVN-----DITSGKGVNVVYDSVGKDTF 818
>gb|CP000264.1| Jannaschia sp. CCS1, complete genome
Length = 4317977
Score = 95.5 bits (236), Expect = 6e-18, Method: Composition-based stats.
Identities = 67/164 (40%), Positives = 86/164 (52%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V VG GV+ +G R AY G+Y V+ A+ + +PD ++ A
Sbjct: 480921 GMEAAGVVEAVGDGVTHLAVGDRAAY--ACSPPGAYTEARVMPAAQVCPLPDEISFEDGA 481094
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A++ +GLT YL + P G TV+ HAAAGG GL+ CQ A+ G R+I G EK
Sbjct: 481095 AMMLKGLTTQYLFHRTTPISKGDTVLFHAAAGGVGLIACQWARSEGIRLIATAGSDEKCT 481274
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
LA G ADV I+Y DW V+ GVD V D VG TF
Sbjct: 481275 LAVEHG-ADVCINY-RDEDWVAKVKDLT-GGVDVVMDSVGADTF 481397
Score = 62.8 bits (151), Expect = 4e-08, Method: Composition-based stats.
Identities = 59/164 (35%), Positives = 79/164 (48%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V +G GV+ LG RVA F G +G A F V A+ +E+PD + +AA
Sbjct: 1188040 GMEIAGVVDALGDGVTSPALGTRVAVFEG---SGGMAEFGVFSATRCVEIPDTMPFEEAA 1187870
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
+ T+H + G ++V AAGG GL ++ GA VI + GAEK
Sbjct: 1187869 GFIVAYGTSHLALTDRAHLKQGERLLVLGAAGGVGLTAVELGAAMGAEVIAVARGAEKLA 1187690
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
+A + G A V+ T D V+A G D VYD VG F
Sbjct: 1187689 VAKAAGAAHVLDS--ETSDIRAEVKALG--GADVVYDAVGGDGF 1187570
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 54/161 (33%), Positives = 72/161 (44%), Gaps = 1/161 (0%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRV-AYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQA 59
G E +G V ++GPGV+ +G +V A G G YA V L VPDG++ AQA
Sbjct: 3986450 GLEASGRVAEIGPGVTRWSVGDKVCALLPG----GGYAEHVVTHQDHALPVPDGLSMAQA 3986283
Query: 60 AAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKA 119
AA+ T V G +VH + G G Q+A GARV G AEK
Sbjct: 3986282 AALPETFFTVWSNVFMRAGLRAGQRFLVHGGSSGIGTTAIQLAHALGARVFTTAGSAEKC 3986103
Query: 120 MLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
+G A+ I+Y D+ +R G D + D VG
Sbjct: 3986102 AACLELG-AEQAINY-RDADFVAAMRDVG--GADVILDMVG 3985992
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 45/155 (29%), Positives = 65/155 (41%), Gaps = 24/155 (15%)
Frame = -2
Query: 34 GSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYP--CGPGSTVVVHAAA 91
GS+A FT VQA L+ P +T +AA TA+ ++ P PG V+V A+
Sbjct: 754279 GSFAQFTNVQAQQLMPRPKHLTWEEAACYTLTLATAYRMLFGHEPHDLKPGQNVLVWGAS 754100
Query: 92 GGTGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVV----------IDYVATPDWP 141
GG G Q+A GA I + K S+G V+ + V TP++
Sbjct: 754099 GGLGSYAIQLANTAGANAIAVISDESKRDFVLSLGAKGVINRKDFNCWGQLPTVNTPEYA 753920
Query: 142 PLVRAAAPKG------------VDAVYDGVGQATF 164
+ A G VD V++ G+ATF
Sbjct: 753919 EWFKEARKFGKSIWDITGKGVNVDMVFEHPGEATF 753815
Score = 37.0 bits (84), Expect = 2.3, Method: Composition-based stats.
Identities = 40/134 (29%), Positives = 55/134 (41%), Gaps = 24/134 (17%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYF-----------------------GGVGCTGSYA 37
G E GTVV+ GP + + +A F G G G+YA
Sbjct: 4062433 GHEYCGTVVEAGPRAQHKVGDRLIAPFILGCGACPACQTGASNTCAHQVVPGFGAPGAYA 4062612
Query: 38 AFTVVQAS-ALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGL 96
V L+ +PD ++ A AA + C+ TA + G V VH GG GL
Sbjct: 4062613 ECVAVPFDHNLVHLPDSLSPALAAGLGCRVTTAWQALTDRADVKAGEWVAVH-GTGGIGL 4062789
Query: 97 LVCQMAKLRGARVI 110
V +AK+ GARV+
Sbjct: 4062790 SVLLLAKMLGARVV 4062831
>gb|CP001048.1| Yersinia pseudotuberculosis PB1/+, complete genome
Length = 4695619
Score = 95.1 bits (235), Expect = 6e-18, Method: Composition-based stats.
Identities = 64/164 (39%), Positives = 88/164 (53%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V KVG VS +G RV Y G+Y+ V A + +P+ ++ QAA
Sbjct: 441693 GTEAAGIVSKVGAAVSSVKVGDRVVY--AQSALGAYSEVHNVPADKIALLPEQISFEQAA 441520
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A +GLTA+YL+ ++ PG + HAAAGG GL+ CQ AK GA++IG G EKA
Sbjct: 441519 ASFLKGLTAYYLLRQTHEIKPGEVFLFHAAAGGVGLIACQWAKALGAKLIGTVGSDEKAQ 441340
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
LA + G A I+Y + + V VYD VG++T+
Sbjct: 441339 LAKAAG-AWATINYRTENIAQRVAELTEGEKVGVVYDSVGKSTW 441211
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 44/157 (28%), Positives = 69/157 (43%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG VV + V+ +G V G+ G YA + V+ + L +P G++ +AA
Sbjct: 2775243 GLEVAGEVVAIAADVTRFKIGDNVC---GLIAGGGYAQYCVIHETNALPIPQGLSAIEAA 2775413
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A+ T + G TV++H + G G ++K GA + + G+E+
Sbjct: 2775414 ALPETFFTVWTNLFQRGHFTAGETVLIHGGSSGIGTTAILLSKAFGAATVIVTVGSEEKR 2775593
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYD 157
A AD+ I+Y RA A KG D + D
Sbjct: 2775594 QACLNLGADIAINYHTQDFVAETKRATAGKGADVIVD 2775704
>emb|BX936398.1| Yersinia pseudotuberculosis IP32953 genome, complete sequence
Length = 4744671
Score = 95.1 bits (235), Expect = 6e-18, Method: Composition-based stats.
Identities = 64/164 (39%), Positives = 88/164 (53%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V KVG VS +G RV Y G+Y+ V A + +P+ ++ QAA
Sbjct: 447579 GTEAAGIVSKVGAAVSSVKVGDRVVY--AQSALGAYSEVHNVPADKIALLPEQISFEQAA 447406
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A +GLTA+YL+ ++ PG + HAAAGG GL+ CQ AK GA++IG G EKA
Sbjct: 447405 ASFLKGLTAYYLLRQTHEIKPGEVFLFHAAAGGVGLIACQWAKALGAKLIGTVGSDEKAQ 447226
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
LA + G A I+Y + + V VYD VG++T+
Sbjct: 447225 LAKAAG-AWATINYRTENIAQRVAELTEGEKVGVVYDSVGKSTW 447097
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 44/157 (28%), Positives = 69/157 (43%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG VV + V+ +G V G+ G YA + V+ + L +P G++ +AA
Sbjct: 2858353 GLEVAGEVVAIAADVTRFKIGDNVC---GLIAGGGYAQYCVIHETNALPIPQGLSAIEAA 2858523
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A+ T + G TV++H + G G ++K GA + + G+E+
Sbjct: 2858524 ALPETFFTVWTNLFQRGHFTAGETVLIHGGSSGIGTTAILLSKAFGAATVIVTVGSEEKR 2858703
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYD 157
A AD+ I+Y RA A KG D + D
Sbjct: 2858704 QACLNLGADIAINYHTQDFVAETKRATAGKGADVIVD 2858814
>gb|CP000950.1| Yersinia pseudotuberculosis YPIII, complete genome
Length = 4689441
Score = 95.1 bits (235), Expect = 6e-18, Method: Composition-based stats.
Identities = 64/164 (39%), Positives = 88/164 (53%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V KVG VS +G RV Y G+Y+ V A + +P+ ++ QAA
Sbjct: 4248580 GTEAAGIVSKVGAAVSSVKVGDRVVY--AQSALGAYSEVHNVPADKIALLPEQISFEQAA 4248753
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A +GLTA+YL+ ++ PG + HAAAGG GL+ CQ AK GA++IG G EKA
Sbjct: 4248754 ASFLKGLTAYYLLRQTHEIKPGEVFLFHAAAGGVGLIACQWAKALGAKLIGTVGSDEKAQ 4248933
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
LA + G A I+Y + + V VYD VG++T+
Sbjct: 4248934 LAKAAG-AWATINYRTENIAQRVAELTEGEKVGVVYDSVGKSTW 4249062
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 44/157 (28%), Positives = 69/157 (43%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG VV + V+ +G V G+ G YA + V+ + L +P G++ +AA
Sbjct: 1923936 GLEVAGEVVAIAADVTRFKIGDNVC---GLIAGGGYAQYCVIHETNALPIPQGLSAIEAA 1923766
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A+ T + G TV++H + G G ++K GA + + G+E+
Sbjct: 1923765 ALPETFFTVWTNLFQRGHFTAGETVLIHGGSSGIGTTAILLSKAFGAATVIVTVGSEEKR 1923586
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYD 157
A AD+ I+Y RA A KG D + D
Sbjct: 1923585 QACLNLGADIAINYHTQDFVAETKRATAGKGADVIVD 1923475
>emb|AM260480.1| Ralstonia eutropha H16 chromosome 2
Length = 2912490
Score = 95.1 bits (235), Expect = 6e-18, Method: Composition-based stats.
Identities = 63/164 (38%), Positives = 91/164 (55%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG V VGPGV+ G RV Y G + G+Y+ +V A+ L+ +P+ ++ AA
Sbjct: 1128708 GVEAAGVVQAVGPGVTHVAEGDRVTYTGFINTLGAYSTERLVPAAPLIRLPEAISFETAA 1128887
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A+ +GLT+ YL+ YP G +++HAAAGG GL+V Q A+L G VIG KA
Sbjct: 1128888 AMTMRGLTSAYLMRRIYPFQGGEAILLHAAAGGVGLIVSQWARLLGLTVIGTVSTEAKAE 1129067
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
+A + G D +I+Y + GV V+D VG++TF
Sbjct: 1129068 VARAHG-CDHIINYSHEDVAKRVRELTDGAGVSVVFDSVGKSTF 1129196
Score = 88.6 bits (218), Expect = 6e-16, Method: Composition-based stats.
Identities = 61/164 (37%), Positives = 88/164 (53%)
Frame = +1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG + VG GV+ +G RV Y G G+Y+ ++ A L+ +P ++ AA
Sbjct: 1164595 GNEAAGVIEAVGAGVTHLAVGDRVTYTGFTNTLGAYSTERLISAGPLIRLPQAISCEVAA 1164774
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A+ +GL+A YL+ YP G ++++HAAAGG GL+V Q AKL G VIG KA
Sbjct: 1164775 AMTMRGLSAAYLMRRIYPFKAGDSILLHAAAGGVGLIVAQWAKLLGLTVIGTVSTDAKAE 1164954
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
+A + G D I+Y + GV+ V+D VG+ TF
Sbjct: 1164955 VARAHG-CDHTINYSHEDVARRVRELTDGVGVNVVFDSVGKDTF 1165083
Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 67/164 (40%), Positives = 90/164 (54%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E AG VV VGPGV+ G RV Y G V G+Y+ +V A+ L+ +P+ + AA
Sbjct: 2847594 GVEAAGVVVSVGPGVTNVAAGDRVTYTGFVNTLGAYSTERLVPAAPLIRLPESIAFETAA 2847773
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A+ +GLT+ YL+ YP G T+++HAAAGG GL+V Q AKL G VIG KA
Sbjct: 2847774 AMTMRGLTSAYLMRRIYPFSQGDTILLHAAAGGVGLIVSQWAKLLGLTVIGTVSTEAKAE 2847953
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
+A + G D +I Y + GV V+D VG+ TF
Sbjct: 2847954 VARAHG-CDHIIQYTREDVAKRVRELTDGVGVSVVFDSVGKTTF 2848082
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 48/120 (40%), Positives = 59/120 (49%), Gaps = 1/120 (0%)
Frame = -1
Query: 39 FTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLV 98
F VV A+AL VP G++ A AA + C GLTA + GPG V+V GG +
Sbjct: 1969944 FAVVPAAALTRVPLGLSLAAAATLPCAGLTAWRALGCCGGIGPGDVVLVQ-GTGGVSVFA 1969768
Query: 99 CQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRA-AAPKGVDAVYD 157
Q AK RGA VI K ++G AD VI Y A PDW R +GVD + D
Sbjct: 1969767 LQFAKTRGAAVIATSSSEGKLERLRALG-ADHVIHYKAEPDWGRAARQWTGGRGVDHIVD 1969591
Score = 56.2 bits (134), Expect = 4e-06, Method: Composition-based stats.
Identities = 46/138 (33%), Positives = 64/138 (46%), Gaps = 1/138 (0%)
Frame = +1
Query: 29 GVGCTGSYAAFTVVQASALLEVPDGVTDAQAAAVLCQGLTAHYLVDSSYPCGPGSTVVVH 88
GV G + + V+ +L+ P + AQA+ + C GLTA + + PG TVVV
Sbjct: 582799 GVPGPGMLSEYVVLAEDSLVSAPRTLDAAQASTLTCAGLTAWQALAEATVTRPGDTVVV- 582975
Query: 89 AAAGGTGLLVCQMAKLRGARVIGICGGAEKAMLATSVGRADVVIDYVATPDWPPLVRA-A 147
GG L Q+A+ +GARVI + G +K +G A V T DWP VR
Sbjct: 582976 IGTGGVALFAVQIARAQGARVIVVSGSDDKLARVQELGAAHGV-HRGRTADWPAAVRELT 583152
Query: 148 APKGVDAVYDGVGQATFA 165
+G D V + G F
Sbjct: 583153 GGRGADHVLELAGGDNFG 583206
Score = 51.6 bits (122), Expect = 7e-05, Method: Composition-based stats.
Identities = 60/166 (36%), Positives = 80/166 (48%), Gaps = 2/166 (1%)
Frame = -1
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCT--GSYAAFTVVQASALLEVPDGVTDAQ 58
G + +G V VG GV + + G+RV VG GSYA + V ++ +PD + A+
Sbjct: 341331 GFDASGVVAAVGSGVKDFVPGQRVFAQTAVGAGKWGSYAEYVAVSQDCVVPIPDNLGFAE 341152
Query: 59 AAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEK 118
AAAV L A + P TV+VH AG G Q+AK GA V C A +
Sbjct: 341151 AAAVPTPALAAWTGLFDEGGLKPVQTVLVHGGAGAVGTFAVQLAKAAGATVAATCSAARR 340972
Query: 119 AMLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVGQATF 164
L ++G D+ IDY D ++A AP GVD V D VG T
Sbjct: 340971 DEL-MALG-CDLAIDYRGG-DIAAAMQAWAPAGVDLVLDAVGCGTL 340843
Score = 51.6 bits (122), Expect = 8e-05, Method: Composition-based stats.
Identities = 50/160 (31%), Positives = 71/160 (44%)
Frame = +2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G E G VV GPGV ++G+R+ + G YA + VP ++DA+AA
Sbjct: 523094 GLEVCGEVVACGPGVDSQLMGQRLM---SLVPGGGYAPWCTAPVDQSFIVPGTLSDAEAA 523264
Query: 61 AVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKAM 120
A+ T + + G TV++H AAGG G L +MA GA VI +
Sbjct: 523265 ALPEGLFTVWHNLFELGRLTMGETVLIHGAAGGIGTLAIRMAHAAGATVIATDNDESRFP 523444
Query: 121 LATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYDGVG 160
++G AD I + T + +GVD V D VG
Sbjct: 523445 ELRAMG-ADATICWPTTDFTKACLEYTDGRGVDVVIDIVG 523561
Score = 48.5 bits (114), Expect = 7e-04, Method: Composition-based stats.
Identities = 48/163 (29%), Positives = 74/163 (45%), Gaps = 3/163 (1%)
Frame = +2
Query: 1 GEEGAGTVVKVGPG-VSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQA 59
G EGAG VV G ++ ++GK VA GG Y+ + + A L +P+G T A
Sbjct: 373460 GNEGAGVVVDAGSSPAAQALMGKTVAAIGG----AMYSQYRCISADQCLVLPEGATPADG 373627
Query: 60 AAVLCQGLTAHYLVDSSYPCGPGSTVVVH-AAAGGTGLLVCQMAKLRGARVIGICGGAEK 118
A+ LTA +V++ G + +VH AAA G ++ Q+ G +++ I E+
Sbjct: 373628 ASSFVNPLTALGMVETMRL--EGHSALVHTAAASNLGQMLNQICLKDGIKLVNIVRKQEQ 373801
Query: 119 AMLATSVGRADVVIDYVATPDW-PPLVRAAAPKGVDAVYDGVG 160
A L + G V A+P + L A G +D G
Sbjct: 373802 ADLLKAQGAVHVC--NAASPTFMQDLTEALVATGATIAFDATG 373924
Score = 43.5 bits (101), Expect = 0.021, Method: Composition-based stats.
Identities = 43/158 (27%), Positives = 68/158 (43%), Gaps = 1/158 (0%)
Frame = +3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRV-AYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQA 59
G E AG V +G GV+ +G V A G G YA ++V L +PDG+ +A
Sbjct: 1486158 GLEVAGEVAALGQGVTGFRVGDLVCALIPG----GGYAEYSVASEHNTLHLPDGLRLVEA 1486325
Query: 60 AAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAEKA 119
AA+ +T + G T+++H A G G ++K GA I ++
Sbjct: 1486326 AAMPETFMTVWLNLFQRGKFTKGDTILIHGGASGIGTTATMLSKAFGAAKIITTVASDAQ 1486505
Query: 120 MLATSVGRADVVIDYVATPDWPPLVRAAAPKGVDAVYD 157
A+ AD ++Y+ ++R KG D + D
Sbjct: 1486506 RDASLALGADYAVNYLEEDFVEAVMRVTEGKGADVIVD 1486619
Score = 37.7 bits (86), Expect = 1.2, Method: Composition-based stats.
Identities = 25/69 (36%), Positives = 35/69 (50%)
Frame = -2
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGGVGCTGSYAAFTVVQASALLEVPDGVTDAQAA 60
G + AGTV VGP V+ +G V Y G + +GS A F +V + P + A AA
Sbjct: 1929944 GWDAAGTVAAVGPEVTLFKVGDPVYYAGSITRSGSNAEFHLVDERIVGHKPASLDFANAA 1929765
Query: 61 AVLCQGLTA 69
A+ +TA
Sbjct: 1929764 ALPLTAITA 1929738
Score = 35.8 bits (81), Expect = 4.1, Method: Composition-based stats.
Identities = 52/168 (30%), Positives = 75/168 (44%), Gaps = 4/168 (2%)
Frame = -3
Query: 1 GEEGAGTVVKVGPGVSETMLGKRVAYFGG---VGCTGSYAAFTVVQASALLEVPDGVTDA 57
G + AG VV G SE +LG+ V GG + G++ + +QASA+ P V+
Sbjct: 2036317 GRDYAGLVVD---GPSE-LLGQPVWGSGGELGIRRDGTHGKYLRIQASAVRAKPASVSLL 2036150
Query: 58 QAAAVLCQGLTAHYLVDSSYPCGPGSTVVVHAAAGGTGLLVCQMAKLRGARVIGICGGAE 117
+A AV +TA+ + + GSTV+V G G Q+A GARV + AE
Sbjct: 2036149 EAGAVGVPFITAYEGLRRAGMPQAGSTVLVCGGNGKVGQATIQIATALGARVFAVERTAE 2035970
Query: 118 KAMLATSVGRADVVIDYVATPDWPPLVRAAAP-KGVDAVYDGVGQATF 164
S DV + ++ +VR G D VY+ VG F
Sbjct: 2035969 AYRGHAS---GDVRMIDASSESIAAVVREETDGHGADIVYNTVGSPYF 2035835
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.319 0.136 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 481280006
Number of extensions: 6883103
Number of successful extensions: 30192
Number of sequences better than 10: 203
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 30071
Number of HSP's successfully gapped: 353
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 16 (7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 78 (34.7 bits)
Query= gi|154331742|ref|NC_009296.1|:subseq(169349,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 3
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
ref|XM_001561588.1| Leishmania braziliensis MHOM/BR/75/M2904 qui... 73 3e-11
emb|AM494940.1| Leishmania braziliensis chromosome 3 73 3e-11
>ref|XM_001561588.1| Leishmania braziliensis MHOM/BR/75/M2904 quinone oxidoreductase,
putative (LbrM03_V2.0480) partial mRNA
Length = 999
Score = 73.2 bits (178), Expect = 3e-11, Method: Composition-based stats.
Identities = 59/79 (74%), Positives = 59/79 (74%)
Frame = +2
Query: 20 LESASPTLVVSAAPAATLPSQWSKPXXXXXXXXXXXXXXXXXXXAKVURHTTLWTPATRA 79
LESASPTLVVSAAPAATLPSQWSKP AKV RHTTLWTPATRA
Sbjct: 248 LESASPTLVVSAAPAATLPSQWSKPLRCSRCRMG*LMRRRRRCCAKV*RHTTLWTPATRA 427
Query: 80 AQAPRWWCTPPLEERGCWY 98
AQAPRWWCTPPLEERGCWY
Sbjct: 428 AQAPRWWCTPPLEERGCWY 484
>emb|AM494940.1| Leishmania braziliensis chromosome 3
Length = 388728
Score = 73.2 bits (178), Expect = 3e-11, Method: Composition-based stats.
Identities = 59/79 (74%), Positives = 59/79 (74%)
Frame = +2
Query: 20 LESASPTLVVSAAPAATLPSQWSKPXXXXXXXXXXXXXXXXXXXAKVURHTTLWTPATRA 79
LESASPTLVVSAAPAATLPSQWSKP AKV RHTTLWTPATRA
Sbjct: 169409 LESASPTLVVSAAPAATLPSQWSKPLRCSRCRMG*LMRRRRRCCAKV*RHTTLWTPATRA 169588
Query: 80 AQAPRWWCTPPLEERGCWY 98
AQAPRWWCTPPLEERGCWY
Sbjct: 169589 AQAPRWWCTPPLEERGCWY 169645
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.324 0.130 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 294051310
Number of extensions: 2687616
Number of successful extensions: 61977
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 61962
Number of HSP's successfully gapped: 0
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 15 (7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.0 bits)
S2: 78 (34.7 bits)
Query= gi|154331742|ref|NC_009296.1|:subseq(176686,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 3
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
ref|XM_001561591.1| Leishmania braziliensis MHOM/BR/75/M2904 kin... 149 2e-34
emb|AM494940.1| Leishmania braziliensis chromosome 3 149 2e-34
emb|AM502249.1| Leishmania infantum chromosome 31 105 4e-21
ref|XM_001467501.1| Leishmania infantum JPCM5 kinase like protei... 105 5e-21
ref|XM_001687303.1| Leishmania major kinase-like protein (LmjF03... 83 3e-14
gb|AC125735.1| Leishmania major strain Friedlin chromosome 3, co... 83 3e-14
>ref|XM_001561591.1| Leishmania braziliensis MHOM/BR/75/M2904 kinase-like protein
(LbrM03_V2.0510) partial mRNA
Length = 1062
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 113/162 (69%), Positives = 113/162 (69%)
Frame = +3
Query: 1 TRQHPRUQDPHGEAGHPPELVHPSIAIRGAPRRRDLACVGGAXXXXXXXXXXXXXXXXXX 60
TRQHPR QDPHGEAGHPPELVHPSIAIRGAPRRRDLACVGGA
Sbjct: 312 TRQHPR*QDPHGEAGHPPELVHPSIAIRGAPRRRDLACVGGAGDLRGCKL*RCLRRDCRC 491
Query: 61 WPERDAVQRPHRYXXXXXXXXQRUUTPGYXXXXXXXXXXXXXXXXXXXPQAAGTANHLRL 120
WPERDAVQRPHRY QR TPGY PQAAGTANHLRL
Sbjct: 492 WPERDAVQRPHRYDDPPRAARQR**TPGYQEGHCRGGRHGRCHQE*RQPQAAGTANHLRL 671
Query: 121 HPRRHVHGGEAGLREAGPRRLRUGEDERAGAMGSDDEDVEHA 162
HPRRHVHGGEAGLREAGPRRLR GEDERAGAMGSDDEDVEHA
Sbjct: 672 HPRRHVHGGEAGLREAGPRRLR*GEDERAGAMGSDDEDVEHA 797
>emb|AM494940.1| Leishmania braziliensis chromosome 3
Length = 388728
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 113/162 (69%), Positives = 113/162 (69%)
Frame = +2
Query: 1 TRQHPRUQDPHGEAGHPPELVHPSIAIRGAPRRRDLACVGGAXXXXXXXXXXXXXXXXXX 60
TRQHPR QDPHGEAGHPPELVHPSIAIRGAPRRRDLACVGGA
Sbjct: 176687 TRQHPR*QDPHGEAGHPPELVHPSIAIRGAPRRRDLACVGGAGDLRGCKL*RCLRRDCRC 176866
Query: 61 WPERDAVQRPHRYXXXXXXXXQRUUTPGYXXXXXXXXXXXXXXXXXXXPQAAGTANHLRL 120
WPERDAVQRPHRY QR TPGY PQAAGTANHLRL
Sbjct: 176867 WPERDAVQRPHRYDDPPRAARQR**TPGYQEGHCRGGRHGRCHQE*RQPQAAGTANHLRL 177046
Query: 121 HPRRHVHGGEAGLREAGPRRLRUGEDERAGAMGSDDEDVEHA 162
HPRRHVHGGEAGLREAGPRRLR GEDERAGAMGSDDEDVEHA
Sbjct: 177047 HPRRHVHGGEAGLREAGPRRLR*GEDERAGAMGSDDEDVEHA 177172
>emb|AM502249.1| Leishmania infantum chromosome 31
Length = 1744348
Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats.
Identities = 90/165 (54%), Positives = 96/165 (58%)
Frame = -3
Query: 2 RQHPRUQDPHGEAGHPPELVHPSIAIRGAPRRRDLACVGGAXXXXXXXXXXXXXXXXXXW 61
RQHPR QDPHGEA H PELVHPSIAIR APRRR LAC+GGA W
Sbjct: 1313021 RQHPR*QDPHGEAWHAPELVHPSIAIRWAPRRRHLACMGGAGDLRGRELRRRLCRDRRRW 1312842
Query: 62 PERDAVQRPHRYXXXXXXXXQRUUTPGYXXXXXXXXXXXXXXXXXXXPQAAGTANHLRLH 121
PERD VQ PH Y QR G+ QA G A+H+RL
Sbjct: 1312841 PERDTVQGPHGYDDPPRAARQRG*ASGHQERRRRGGGHGRCHEKRWQTQAPGAADHVRLR 1312662
Query: 122 PRRHVHGGEAGLREAGPRRLRUGEDERAGAMGSDDEDVEHARRER 166
PRRHVHG +AGLREAG RRLR G DERAGA+G DD DVEH RER
Sbjct: 1312661 PRRHVHGEKAGLREAGHRRLRRGRDERAGAVGGDDADVEHTPRER 1312527
>ref|XM_001467501.1| Leishmania infantum JPCM5 kinase like protein (LinJ31.2800) partial
mRNA
Length = 1050
Score = 105 bits (262), Expect = 5e-21, Method: Composition-based stats.
Identities = 90/165 (54%), Positives = 96/165 (58%)
Frame = +3
Query: 2 RQHPRUQDPHGEAGHPPELVHPSIAIRGAPRRRDLACVGGAXXXXXXXXXXXXXXXXXXW 61
RQHPR QDPHGEA H PELVHPSIAIR APRRR LAC+GGA W
Sbjct: 318 RQHPR*QDPHGEAWHAPELVHPSIAIRWAPRRRHLACMGGAGDLRGRELRRRLCRDRRRW 497
Query: 62 PERDAVQRPHRYXXXXXXXXQRUUTPGYXXXXXXXXXXXXXXXXXXXPQAAGTANHLRLH 121
PERD VQ PH Y QR G+ QA G A+H+RL
Sbjct: 498 PERDTVQGPHGYDDPPRAARQRG*ASGHQERRRRGGGHGRCHEKRWQTQAPGAADHVRLR 677
Query: 122 PRRHVHGGEAGLREAGPRRLRUGEDERAGAMGSDDEDVEHARRER 166
PRRHVHG +AGLREAG RRLR G DERAGA+G DD DVEH RER
Sbjct: 678 PRRHVHGEKAGLREAGHRRLRRGRDERAGAVGGDDADVEHTPRER 812
>ref|XM_001687303.1| Leishmania major kinase-like protein (LmjF03.0610) mRNA, complete
cds
Length = 1050
Score = 82.8 bits (203), Expect = 3e-14, Method: Composition-based stats.
Identities = 91/165 (55%), Positives = 95/165 (57%)
Frame = +3
Query: 2 RQHPRUQDPHGEAGHPPELVHPSIAIRGAPRRRDLACVGGAXXXXXXXXXXXXXXXXXXW 61
RQH R QDPHGEA H PELVHPSIAIR APRRR LA VGGA W
Sbjct: 318 RQHSR*QDPHGEAWHAPELVHPSIAIRRAPRRRHLARVGGAGNLRGREVRRRLCRDRRRW 497
Query: 62 PERDAVQRPHRYXXXXXXXXQRUUTPGYXXXXXXXXXXXXXXXXXXXPQAAGTANHLRLH 121
PERDAVQ PH Y QR G+ QA G A+H+RL
Sbjct: 498 PERDAVQGPHGYDDPPRAARQRG*AAGHQERCRRGGGHGRCHEKRWQTQAPGAADHVRLR 677
Query: 122 PRRHVHGGEAGLREAGPRRLRUGEDERAGAMGSDDEDVEHARRER 166
PRRHVHG EAGLREAG RRLR G DERAGA+G D EDVE A RER
Sbjct: 678 PRRHVHGREAGLREAGHRRLRRGRDERAGAVGGDAEDVERAPRER 812
>gb|AC125735.1| Leishmania major strain Friedlin chromosome 3, complete sequence
Length = 384518
Score = 82.8 bits (203), Expect = 3e-14, Method: Composition-based stats.
Identities = 91/165 (55%), Positives = 95/165 (57%)
Frame = +1
Query: 2 RQHPRUQDPHGEAGHPPELVHPSIAIRGAPRRRDLACVGGAXXXXXXXXXXXXXXXXXXW 61
RQH R QDPHGEA H PELVHPSIAIR APRRR LA VGGA W
Sbjct: 226789 RQHSR*QDPHGEAWHAPELVHPSIAIRRAPRRRHLARVGGAGNLRGREVRRRLCRDRRRW 226968
Query: 62 PERDAVQRPHRYXXXXXXXXQRUUTPGYXXXXXXXXXXXXXXXXXXXPQAAGTANHLRLH 121
PERDAVQ PH Y QR G+ QA G A+H+RL
Sbjct: 226969 PERDAVQGPHGYDDPPRAARQRG*AAGHQERCRRGGGHGRCHEKRWQTQAPGAADHVRLR 227148
Query: 122 PRRHVHGGEAGLREAGPRRLRUGEDERAGAMGSDDEDVEHARRER 166
PRRHVHG EAGLREAG RRLR G DERAGA+G D EDVE A RER
Sbjct: 227149 PRRHVHGREAGLREAGHRRLRRGRDERAGAVGGDAEDVERAPRER 227283
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.318 0.137 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 412165199
Number of extensions: 5094394
Number of successful extensions: 49989
Number of sequences better than 10: 3
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 49940
Number of HSP's successfully gapped: 3
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 16 (7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 78 (34.7 bits)
Query= gi|154331742|ref|NC_009296.1|:subseq(176686,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 3
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
emb|AM494940.1| Leishmania braziliensis chromosome 3 335 2e-90
ref|XM_001561591.1| Leishmania braziliensis MHOM/BR/75/M2904 kin... 335 3e-90
ref|XM_001467501.1| Leishmania infantum JPCM5 kinase like protei... 288 5e-76
emb|AM502249.1| Leishmania infantum chromosome 31 287 8e-76
ref|XM_001687303.1| Leishmania major kinase-like protein (LmjF03... 285 4e-75
gb|AC125735.1| Leishmania major strain Friedlin chromosome 3, co... 284 6e-75
gb|CP000613.1| Rhodospirillum centenum SW, complete genome 162 4e-38
gb|CP001364.1| Chloroflexus sp. Y-400-fl, complete genome 159 3e-37
gb|CP000909.1| Chloroflexus aurantiacus J-10-fl, complete genome 159 3e-37
gb|BC151912.1| Danio rerio methylmalonic aciduria (cobalamin def... 158 5e-37
ref|XM_002131081.1| PREDICTED: Ciona intestinalis similar to met... 157 1e-36
dbj|AK115014.1| Ciona intestinalis cDNA, clone:cieg026p13, full ... 157 1e-36
gb|CP001337.1| Chloroflexus aggregans DSM 9485, complete genome 155 4e-36
gb|CP000804.1| Roseiflexus castenholzii DSM 13941, complete genome 154 8e-36
gb|CP000686.1| Roseiflexus sp. RS-1, complete genome 154 1e-35
dbj|AP009384.1| Azorhizobium caulinodans ORS 571 DNA, complete g... 153 2e-35
ref|XM_002213392.1| Branchiostoma floridae hypothetical protein ... 152 2e-35
ref|XR_011889.1| PREDICTED: Macaca mulatta similar to methylmalo... 152 4e-35
ref|XM_539752.2| PREDICTED: Canis familiaris similar to methylma... 151 7e-35
gb|BC149854.1| Bos taurus methylmalonic aciduria (cobalamin defi... 151 8e-35
ref|XM_002240816.1| Branchiostoma floridae hypothetical protein ... 151 8e-35
gb|CP000781.1| Xanthobacter autotrophicus Py2, complete genome 150 9e-35
gb|BC149875.1| Bos taurus methylmalonic aciduria (cobalamin defi... 150 1e-34
ref|NM_172250.2| Homo sapiens methylmalonic aciduria (cobalamin ... 150 1e-34
gb|BC101179.2| Homo sapiens methylmalonic aciduria (cobalamin de... 150 1e-34
gb|BC101178.2| Homo sapiens methylmalonic aciduria (cobalamin de... 150 1e-34
dbj|AK126662.1| Homo sapiens cDNA FLJ44706 fis, clone BRACE30172... 150 1e-34
gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome 150 1e-34
gb|BC101181.2| Homo sapiens methylmalonic aciduria (cobalamin de... 150 2e-34
ref|XM_526697.2| PREDICTED: Pan troglodytes methylmalonic acidur... 150 2e-34
gb|EZ011141.1| TSA: Acropora millepora SeqIndex12622, mRNA sequence 149 3e-34
gb|CP000489.1| Paracoccus denitrificans PD1222 chromosome 1, com... 149 4e-34
ref|NM_001106174.1| Rattus norvegicus methylmalonic aciduria (co... 148 5e-34
ref|XM_002180541.1| Phaeodactylum tricornutum CCAP 1055/1 predic... 148 5e-34
ref|NM_133823.3| Mus musculus methylmalonic aciduria (cobalamin ... 148 6e-34
dbj|AK050255.1| Mus musculus adult male liver tumor cDNA, RIKEN ... 148 6e-34
gb|BC021954.1| Mus musculus methylmalonic aciduria (cobalamin de... 148 6e-34
ref|XM_001501875.1| PREDICTED: Equus caballus methylmalonic acid... 147 9e-34
gb|CP000830.1| Dinoroseobacter shibae DFL 12, complete genome 147 1e-33
ref|NM_001027131.3| Caenorhabditis elegans MethylMalonic Aciduri... 147 1e-33
ref|NM_001027132.2| Caenorhabditis elegans MethylMalonic Aciduri... 147 1e-33
ref|XM_001510967.1| PREDICTED: Ornithorhynchus anatinus similar ... 147 2e-33
gb|CP000774.1| Parvibaculum lavamentivorans DS-1, complete genome 146 2e-33
gb|U41105.2| Caenorhabditis elegans cosmid T02G5, complete sequence 146 2e-33
dbj|BA000004.3| Bacillus halodurans C-125 DNA, complete genome 146 2e-33
gb|CP001096.1| Rhodopseudomonas palustris TIE-1, complete genome 146 2e-33
emb|BX572598.1| Rhodopseudomonas palustris CGA009 complete genom... 146 2e-33
emb|CU234118.1| Bradyrhizobium sp. ORS278,complete sequence 146 2e-33
ref|XM_001641622.1| Nematostella vectensis predicted protein (NE... 146 3e-33
ref|XM_002286138.1| Thalassiosira pseudonana CCMP1335 hypothetic... 145 3e-33
gb|AE006470.1| Chlorobium tepidum TLS, complete genome 145 3e-33
gb|CP000362.1| Roseobacter denitrificans OCh 114, complete genome 145 4e-33
gb|CP000943.1| Methylobacterium sp. 4-46, complete genome 145 4e-33
ref|XM_001175923.1| PREDICTED: Strongylocentrotus purpuratus sim... 145 5e-33
ref|XM_791354.2| PREDICTED: Strongylocentrotus purpuratus simila... 145 5e-33
ref|XM_640614.1| Dictyostelium discoideum AX4 hypothetical prote... 145 5e-33
ref|XM_002107615.1| Trichoplax adhaerens hypothetical protein, mRNA 145 6e-33
gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 145 6e-33
gb|CP000264.1| Jannaschia sp. CCS1, complete genome 144 7e-33
dbj|AP010918.1| Mycobacterium bovis BCG str. Tokyo 172 DNA, comp... 144 7e-33
gb|CP000717.1| Mycobacterium tuberculosis F11, complete genome 144 7e-33
gb|CP000611.1| Mycobacterium tuberculosis H37Ra, complete genome 144 7e-33
emb|AM408590.1| Mycobacterium bovis BCG Pasteur 1173P2, complete... 144 7e-33
gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome 144 7e-33
gb|BC027398.1| Mus musculus methylmalonic aciduria (cobalamin de... 144 7e-33
emb|BX842576.1| Mycobacterium tuberculosis H37Rv complete genome... 144 7e-33
emb|BX248339.1| Mycobacterium bovis subsp. bovis AF2122/97 compl... 144 7e-33
gb|AD000015.1|MSGY175 Mycobacterium tuberculosis sequence from c... 144 7e-33
gb|AD000001.1|MSGY456 Mycobacterium tuberculosis sequence from c... 144 7e-33
gb|BC085229.1| Mus musculus cDNA clone IMAGE:6441134, containing... 144 9e-33
gb|CP000480.1| Mycobacterium smegmatis str. MC2 155, complete ge... 144 9e-33
gb|CP000494.1| Bradyrhizobium sp. BTAi1, complete genome 143 2e-32
gb|CP000820.1| Frankia sp. EAN1pec, complete genome 143 2e-32
dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ... 142 2e-32
dbj|AB126694.1| Magnetospirillum magneticum genes for periplasmi... 142 2e-32
emb|FM211192.1| Mycobacterium leprae Br4923, complete genome seq... 142 3e-32
emb|AL583923.1|MLEPRTN7 Mycobacterium leprae strain TN complete ... 142 3e-32
gb|CP000479.1| Mycobacterium avium 104, complete genome 142 3e-32
gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome 142 3e-32
gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome 142 3e-32
gb|CP001322.1| Desulfatibacillum alkenivorans AK-01, complete ge... 142 4e-32
gb|CP001099.1| Chlorobaculum parvum NCIB 8327, complete genome 142 5e-32
gb|CP000482.1| Pelobacter propionicus DSM 2379, complete genome 142 5e-32
gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome 141 6e-32
gb|CP001349.1| Methylobacterium nodulans ORS 2060, complete genome 141 8e-32
emb|CT573213.2| Frankia alni str. ACN14A chromosome, complete se... 141 8e-32
gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 140 9e-32
gb|CP000908.1| Methylobacterium extorquens PA1, complete genome 140 1e-31
gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome 140 1e-31
emb|CU458896.1| Mycobacterium abscessus chromosome, complete seq... 140 1e-31
gb|CP000607.1| Chlorobium phaeovibrioides DSM 265, complete genome 140 1e-31
gb|CP000511.1| Mycobacterium vanbaalenii PYR-1, complete genome 140 1e-31
gb|CP000922.1| Anoxybacillus flavithermus WK1, complete genome 140 1e-31
gb|CP000139.1| Bacteroides vulgatus ATCC 8482, complete genome 140 1e-31
gb|CP001097.1| Chlorobium limicola DSM 245, complete genome 140 1e-31
gb|CP000096.1| Pelodictyon luteolum DSM 273, complete genome 140 2e-31
ref|XM_002153927.1| PREDICTED: Hydra magnipapillata similar to m... 140 2e-31
gb|CP000656.1| Mycobacterium gilvum PYR-GCK, complete genome 140 2e-31
gb|CP001029.1| Methylobacterium populi BJ001, complete genome 140 2e-31
gb|CP001298.1| Methylobacterium chloromethanicum CM4, complete g... 140 2e-31
gb|CP000854.1| Mycobacterium marinum M, complete genome 140 2e-31
gb|CP000518.1| Mycobacterium sp. KMS, complete genome 139 2e-31
gb|CP000384.1| Mycobacterium sp. MCS, complete genome 139 2e-31
gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete g... 139 3e-31
gb|CP000580.1| Mycobacterium sp. JLS, complete genome 139 3e-31
gb|CP000108.1| Chlorobium chlorochromatii CaD3, complete genome 139 3e-31
emb|CR555306.1| Azoarcus sp. EbN1 complete genome 139 3e-31
gb|CP000089.1| Dechloromonas aromatica RCB, complete genome 139 3e-31
emb|CR626927.1| Bacteroides fragilis NCTC 9343, complete genome 139 3e-31
dbj|AP006841.1| Bacteroides fragilis YCH46 DNA, complete genome 139 3e-31
gb|CP001001.1| Methylobacterium radiotolerans JCM 2831, complete... 139 4e-31
gb|CP001032.1| Opitutus terrae PB90-1, complete genome 139 4e-31
emb|BX935657.1| Gallus gallus finished cDNA, clone ChEST326a11 139 4e-31
ref|XM_002187808.1| PREDICTED: Taeniopygia guttata similar to MM... 139 4e-31
gb|AF416776.1| Methylobacterium extorquens strain AM1 GTPase/ATP... 138 5e-31
gb|CP000249.1| Frankia sp. CcI3, complete genome 138 5e-31
gb|CP001340.1| Caulobacter crescentus NA1000, complete genome 138 5e-31
gb|AE005673.1| Caulobacter crescentus CB15, complete genome 138 5e-31
gb|M91449.1|CCRPEPNPLE Caulobacter crescentus aminopeptidase N (... 138 5e-31
gb|CP000473.1| Solibacter usitatus Ellin6076, complete genome 138 6e-31
emb|CU207366.1| Gramella forsetii KT0803 complete circular genome 138 6e-31
gb|CP000492.1| Chlorobium phaeobacteroides DSM 266, complete genome 138 6e-31
gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome 138 6e-31
emb|AM406670.1| Azoarcus sp. BH72, complete genome 138 7e-31
ref|XM_001376996.1| PREDICTED: Monodelphis domestica similar to ... 137 8e-31
gb|CP001087.1| Desulfobacterium autotrophicum HRM2, complete genome 137 1e-30
dbj|AK119876.1| Oryza sativa Japonica Group cDNA clone:002-179-F... 137 1e-30
gb|CP001101.1| Chlorobium phaeobacteroides BS1, complete genome 137 1e-30
gb|CP000325.1| Mycobacterium ulcerans Agy99, complete genome 137 1e-30
gb|CP000859.1| Desulfococcus oleovorans Hxd3, complete genome 137 1e-30
gb|CP000655.1| Polynucleobacter necessarius subsp. asymbioticus ... 137 1e-30
gb|AE015924.1| Porphyromonas gingivalis W83, complete genome 137 2e-30
dbj|AP009380.1| Porphyromonas gingivalis ATCC 33277 DNA, complet... 137 2e-30
dbj|BA000043.1| Geobacillus kaustophilus HTA426 DNA, complete ge... 136 2e-30
gb|CP001150.1| Rhodobacter sphaeroides KD131 chromosome 1, compl... 135 3e-30
gb|CP000463.1| Rhodopseudomonas palustris BisA53, complete genome 135 3e-30
emb|AM398681.1| Flavobacterium psychrophilum JIP02/86 complete g... 135 4e-30
gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete... 135 4e-30
gb|CP000316.1| Polaromonas sp. JS666, complete genome 135 4e-30
gb|CP000377.1| Silicibacter sp. TM1040, complete genome 135 4e-30
gb|CP001071.1| Akkermansia muciniphila ATCC BAA-835, complete ge... 135 4e-30
gb|BC079139.1| Rattus norvegicus cDNA clone IMAGE:7127801, with ... 135 5e-30
emb|AM238663.1| Streptomyces ambofaciens ATCC 23877 left chromos... 135 5e-30
gb|CP000685.1| Flavobacterium johnsoniae UW101, complete genome 135 6e-30
emb|CU466930.1| Candidatus Cloacamonas acidaminovorans provision... 134 7e-30
gb|CP000034.1| Shigella dysenteriae Sd197, complete genome 134 7e-30
gb|CP000113.1| Myxococcus xanthus DK 1622, complete genome 134 7e-30
gb|EU062902.1| Uncultured bacterium clone LM0ACA2ZE01FM1 genomic... 134 7e-30
ref|XM_420429.2| PREDICTED: Gallus gallus similar to methylmalon... 134 8e-30
gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 134 8e-30
dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 134 8e-30
dbj|AP009493.1| Streptomyces griseus subsp. griseus NBRC 13350 D... 134 8e-30
dbj|AP010656.1| Candidatus Azobacteroides pseudotrichonymphae ge... 134 9e-30
emb|CU358658.1| Aphanomyces euteiches cDNA 134 9e-30
emb|AM746676.1| Sorangium cellulosum 'So ce 56' complete genome 134 9e-30
emb|AM260198.1| Polyangium cellulosum epi gene, mcm gene and mea... 134 9e-30
dbj|BA000007.2| Escherichia coli O157:H7 str. Sakai DNA, complet... 134 1e-29
gb|CP001164.1| Escherichia coli O157:H7 str. EC4115, complete ge... 134 1e-29
gb|AE005174.2| Escherichia coli O157:H7 EDL933, complete genome 134 1e-29
gb|CP000661.1| Rhodobacter sphaeroides ATCC 17025, complete genome 134 1e-29
emb|CU928145.2| Escherichia coli 55989 chromosome, complete genome 134 1e-29
gb|CP000948.1| Escherichia coli str. K12 substr. DH10B, complete... 134 1e-29
gb|CP000802.1| Escherichia coli HS, complete genome 134 1e-29
dbj|AP009048.1| Escherichia coli str. K12 substr. W3110 DNA, com... 134 1e-29
gb|U00096.2| Escherichia coli str. K-12 substr. MG1655, complete... 134 1e-29
gb|U28377.1|ECU28377 Escherichia coli K-12 genome; approximately... 134 1e-29
emb|CU928164.2| Escherichia coli IAI39 chromosome, complete genome 134 1e-29
gb|CP000880.1| Salmonella enterica subsp. arizonae serovar 62:z4... 134 1e-29
gb|CP000970.1| Escherichia coli SMS-3-5, complete genome 134 1e-29
gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome 133 2e-29
emb|X66836.1|ECSERAICI E.coli serA, iciA, sbm genes and two open... 133 2e-29
gb|U65074.1|ECU65074 Escherichia coli chromosome arginine transp... 133 2e-29
emb|CU928160.2| Escherichia coli IAI1 chromosome, complete genome 133 2e-29
dbj|AP009240.1| Escherichia coli SE11 DNA, complete genome 133 2e-29
gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, compl... 133 2e-29
gb|CP000038.1| Shigella sonnei Ss046, complete genome 133 2e-29
gb|CP000946.1| Escherichia coli ATCC 8739, complete genome 133 2e-29
gb|CP000800.1| Escherichia coli E24377A, complete genome 133 2e-29
gb|CP000577.1| Rhodobacter sphaeroides ATCC 17029 chromosome 1, ... 133 2e-29
gb|CP001013.1| Leptothrix cholodnii SP-6, complete genome 133 2e-29
gb|CP000267.1| Rhodoferax ferrireducens T118, complete genome 133 2e-29
gb|AY548464.2| Aeromicrobium erythreum strain NRRL B-3381 putati... 133 2e-29
gb|CP001108.1| Prosthecochloris aestuarii DSM 271, complete genome 132 3e-29
dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 132 3e-29
emb|AM286415.1| Yersinia enterocolitica subsp. enterocolitica 80... 132 3e-29
emb|BX248357.1| Corynebacterium diphtheriae gravis NCTC13129, co... 132 4e-29
gb|CP001063.1| Shigella boydii CDC 3083-94, complete genome 132 4e-29
gb|CP000036.1| Shigella boydii Sb227, complete genome 132 4e-29
gb|CP000351.1| Leptospira borgpetersenii serovar Hardjo-bovis JB... 132 4e-29
gb|CP000349.1| Leptospira borgpetersenii serovar Hardjo-bovis L5... 132 4e-29
dbj|BA000030.3| Streptomyces avermitilis MA-4680 DNA, complete g... 132 5e-29
gb|CP000557.1| Geobacillus thermodenitrificans NG80-2, complete ... 132 5e-29
emb|CU928163.2| Escherichia coli UMN026 chromosome, complete genome 131 6e-29
gb|CP000140.1| Parabacteroides distasonis ATCC 8503, complete ge... 131 7e-29
gb|CP000088.1| Thermobifida fusca YX, complete genome 131 7e-29
gb|AE010301.1| Leptospira interrogans serovar Lai str. 56601 chr... 131 8e-29
gb|AE016824.1| Leptospira interrogans serovar Copenhageni str. F... 131 8e-29
dbj|BA000036.3| Corynebacterium glutamicum ATCC 13032 DNA, compl... 130 1e-28
emb|BX927152.1| Corynebacterium glutamicum ATCC 13032, IS finger... 130 1e-28
dbj|AP009044.1| Corynebacterium glutamicum R DNA, complete genome 130 1e-28
gb|CP001392.1| Diaphorobacter sp. TPSY, complete genome 130 1e-28
gb|CP000539.1| Acidovorax sp. JS42, complete genome 130 1e-28
emb|CR405828.1| Gallus gallus finished cDNA, clone ChEST575f1 130 1e-28
gb|CP000529.1| Polaromonas naphthalenivorans CJ2, complete genome 130 1e-28
gb|CP000512.1| Acidovorax avenae subsp. citrulli AAC00-1, comple... 130 1e-28
gb|CP000817.1| Lysinibacillus sphaericus C3-41, complete genome 130 2e-28
gb|CP001110.1| Pelodictyon phaeoclathratiforme BU-1, complete ge... 129 3e-28
emb|CU358835.1| Aphanomyces euteiches cDNA 129 3e-28
gb|CP000266.1| Shigella flexneri 5 str. 8401, complete genome 128 5e-28
gb|AE014073.1| Shigella flexneri 2a str. 2457T, complete genome 128 7e-28
gb|CP000884.1| Delftia acidovorans SPH-1, complete genome 127 1e-27
gb|CP001089.1| Geobacter lovleyi SZ, complete genome 127 2e-27
gb|CP000542.1| Verminephrobacter eiseniae EF01-2, complete genome 126 2e-27
gb|CP000787.1| Leptospira biflexa serovar Patoc strain 'Patoc 1 ... 126 2e-27
gb|CP000778.1| Leptospira biflexa serovar Patoc strain 'Patoc 1 ... 126 2e-27
gb|CP000555.1| Methylibium petroleiphilum PM1, complete genome 126 2e-27
gb|AE005674.1| Shigella flexneri 2a str. 301, complete genome 126 2e-27
gb|CP000471.1| Magnetococcus sp. MC-1, complete genome 125 5e-27
gb|CP001010.1| Polynucleobacter necessarius subsp. necessarius S... 125 5e-27
gb|CP000509.1| Nocardioides sp. JS614, complete genome 124 8e-27
ref|XM_002192470.1| PREDICTED: Taeniopygia guttata similar to me... 124 9e-27
gb|CP001100.1| Chloroherpeton thalassium ATCC 35110, complete ge... 124 1e-26
emb|AM420293.1| Saccharopolyspora erythraea NRRL2338 complete ge... 123 2e-26
gb|AY117133.1| Saccharopolyspora erythraea methylmalonyl-CoA mut... 122 4e-26
gb|CP000431.1| Rhodococcus jostii RHA1, complete genome 122 5e-26
dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete g... 121 8e-26
gb|AE017283.1| Propionibacterium acnes KPA171202, complete genome 119 2e-25
gb|AF117980.1|AF117980 Amycolatopsis mediterranei methylmalonyl-... 117 1e-24
ref|XM_002155320.1| PREDICTED: Hydra magnipapillata similar to p... 111 7e-23
dbj|AP008230.1| Desulfitobacterium hafniense Y51 DNA, complete g... 107 2e-21
gb|AE008691.1| Thermoanaerobacter tengcongensis MB4, complete ge... 107 2e-21
gb|CP001336.1| Desulfitobacterium hafniense DCB-2, complete genome 105 6e-21
gb|CP000812.1| Thermotoga lettingae TMO, complete genome 102 3e-20
gb|AY830773.1| Oryctolagus cuniculus methylmalonic aciduria type... 80 2e-19
gb|CP000667.1| Salinispora tropica CNB-440, complete genome 100 3e-19
gb|CP001145.1| Coprothermobacter proteolyticus DSM 5265, complet... 100 3e-19
ref|XM_001749558.1| Monosiga brevicollis MX1 predicted protein M... 98 9e-19
gb|CP000850.1| Salinispora arenicola CNS-205, complete genome 98 1e-18
gb|CP001151.1| Rhodobacter sphaeroides KD131 chromosome 2, compl... 96 3e-18
gb|CP000578.1| Rhodobacter sphaeroides ATCC 17029 chromosome 2, ... 96 4e-18
gb|CP001185.1| Thermosipho africanus TCF52B, complete genome 95 7e-18
gb|CP000782.1| Xanthobacter autotrophicus Py2 plasmid pXAUT01, c... 95 8e-18
dbj|AK160235.1| Mus musculus 10, 11 days embryo whole body cDNA,... 94 1e-17
gb|CP000724.1| Alkaliphilus metalliredigens QYMF, complete genome 94 1e-17
gb|EU016671.1| Uncultured marine microorganism HF4000_APKG10K24 ... 93 2e-17
gb|CP001034.1| Natranaerobius thermophilus JW/NM-WN-LF, complete... 92 5e-17
dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete g... 92 7e-17
gb|CP000875.1| Herpetosiphon aurantiacus ATCC 23779, complete ge... 92 7e-17
gb|CP000879.1| Petrotoga mobilis SJ95, complete genome 92 7e-17
gb|AE017221.1| Thermus thermophilus HB27, complete genome 92 8e-17
dbj|BA000001.2| Pyrococcus horikoshii OT3 DNA, complete genome 92 8e-17
gb|CP000924.1| Thermoanaerobacter pseudethanolicus ATCC 33223, c... 92 8e-17
gb|CP000923.1| Thermoanaerobacter sp. X514, complete genome 92 8e-17
dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, comp... 91 1e-16
gb|CP000855.1| Thermococcus onnurineus NA1, complete genome 91 1e-16
emb|AL939123.1|SCO939123 Streptomyces coelicolor A3(2) complete ... 91 1e-16
emb|AM260480.1| Ralstonia eutropha H16 chromosome 2 91 2e-16
gb|CP000769.1| Anaeromyxobacter sp. Fw109-5, complete genome 91 2e-16
dbj|AP006878.1| Thermococcus kodakarensis KOD1 DNA, complete genome 91 2e-16
gb|CP000740.1| Sinorhizobium medicae WSM419 plasmid pSMED02, com... 90 2e-16
gb|CP000682.1| Metallosphaera sedula DSM 5348, complete genome 90 3e-16
emb|BX276105.6| Zebrafish DNA sequence from clone CH211-194G2 in... 65 3e-16
emb|AJ248283.1|CNSPAX01 Pyrococcus abyssi complete genome; segme... 89 4e-16
dbj|BA000002.3| Aeropyrum pernix K1 DNA, complete genome 89 4e-16
gb|AE009950.1| Pyrococcus furiosus DSM 3638, complete genome 89 5e-16
gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome 89 5e-16
gb|CP000141.1| Carboxydothermus hydrogenoformans Z-2901, complet... 89 6e-16
gb|CP000077.1| Sulfolobus acidocaldarius DSM 639, complete genome 89 7e-16
gb|CP000148.1| Geobacter metallireducens GS-15, complete genome 88 9e-16
gb|AY281355.1| Uncultured Acidobacteria bacterium clone 39p18 ge... 88 1e-15
gb|CP000853.1| Alkaliphilus oremlandii OhILAs, complete genome 88 1e-15
gb|CP000481.1| Acidothermus cellulolyticus 11B strain 11B, compl... 87 1e-15
gb|CP000930.2| Heliobacterium modesticaldum Ice1, complete genome 87 2e-15
gb|AC156576.3| Mus musculus BAC clone RP23-7C22 from chromosome ... 72 2e-15
gb|CP001131.1| Anaeromyxobacter sp. K, complete genome 87 2e-15
gb|CP000478.1| Syntrophobacter fumaroxidans MPOB, complete genome 87 2e-15
gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 87 2e-15
ref|XR_033589.1| PREDICTED: Mus musculus similar to Methylmaloni... 72 2e-15
gb|CP001359.1| Anaeromyxobacter dehalogenans 2CP-1, complete genome 87 2e-15
gb|CP000771.1| Fervidobacterium nodosum Rt17-B1, complete genome 86 4e-15
gb|CP000716.1| Thermosipho melanesiensis BI429, complete genome 86 6e-15
gb|CP001390.1| Geobacter sp. FRC-32, complete genome 85 6e-15
gb|AE000782.1| Archaeoglobus fulgidus DSM 4304, complete genome 85 7e-15
ref|XR_030893.1| PREDICTED: Mus musculus similar to Methylmaloni... 70 8e-15
gb|CP001124.1| Geobacter bemidjiensis Bem, complete genome 85 1e-14
gb|CP000386.1| Rubrobacter xylanophilus DSM 9941, complete genome 84 2e-14
gb|CP000698.1| Geobacter uraniireducens Rf4, complete genome 84 2e-14
gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome 84 2e-14
gb|CP000556.1| Methylibium petroleiphilum PM1 plasmid RPME01, co... 82 6e-14
emb|AL445064.1|TACID2 Thermoplasma acidophilum complete genome; ... 81 1e-13
dbj|AP009389.1| Pelotomaculum thermopropionicum SI DNA, complete... 80 1e-13
dbj|BA000011.4| Thermoplasma volcanium GSS1 DNA, complete genome 79 3e-13
dbj|BA000023.2| Sulfolobus tokodaii str. 7 DNA, complete genome 79 4e-13
emb|AM774415.1| Halobacterium salinarum complete genome, strain R1 79 5e-13
gb|AE004437.1| Halobacterium sp. NRC-1, complete genome 79 5e-13
gb|AE017261.1| Picrophilus torridus DSM 9790, complete genome 78 1e-12
emb|AM180088.1| Haloquadratum walsbyi DSM 16790 complete genome 78 1e-12
dbj|AB114912.1| Streptomyces sp. CL190 acs gene for acetoacetyl ... 78 1e-12
gb|AE006641.1| Sulfolobus solfataricus P2, complete genome 77 1e-12
gb|EU016658.1| Uncultured marine microorganism HF4000_APKG8K5 fo... 76 3e-12
emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome 76 3e-12
gb|CP001365.1| Halorubrum lacusprofundi ATCC 49239 chromosome 1,... 76 4e-12
gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, c... 76 4e-12
gb|CP000612.1| Desulfotomaculum reducens MI-1, complete genome 76 5e-12
gb|CP001275.1| Thermomicrobium roseum DSM 5159, complete genome 72 6e-11
ref|NG_007536.1| Homo sapiens methylmalonic aciduria (cobalamin ... 68 8e-10
gb|AC093864.3| Homo sapiens BAC clone RP11-557J10 from 4, comple... 68 8e-10
emb|CR619215.1| full-length cDNA clone CS0DJ014YH16 of T cells (... 68 8e-10
gb|AF524843.1|AF524841S3 Homo sapiens methylmalonic aciduria typ... 68 8e-10
gb|BC101180.2| Homo sapiens methylmalonic aciduria (cobalamin de... 68 1e-09
dbj|AK255529.1| Gryllus bimaculatus mRNA, GBcontig02390 67 1e-09
gb|AC124201.4| Mus musculus BAC clone RP23-329B24 from chromosom... 64 2e-08
gb|AC101790.5| Mus musculus chromosome 8, clone RP24-163M14, com... 64 2e-08
gb|AE010300.1| Leptospira interrogans serovar lai str. 56601 chr... 59 5e-07
gb|AE016823.1| Leptospira interrogans serovar Copenhageni str. F... 59 5e-07
gb|CP000127.1| Nitrosococcus oceani ATCC 19707, complete genome 59 7e-07
gb|CP000348.1| Leptospira borgpetersenii serovar Hardjo-bovis L5... 57 1e-06
gb|CP000350.1| Leptospira borgpetersenii serovar Hardjo-bovis JB... 57 2e-06
ref|XM_001619606.1| Nematostella vectensis predicted protein (NE... 56 4e-06
gb|EU795085.1| Uncultured bacterium ARCTIC23_B_12 genomic sequence 54 1e-05
gb|EU795242.1| Uncultured bacterium ARCTIC29_C_07 genomic sequence 54 1e-05
emb|BX842651.1| Bdellovibrio bacteriovorus complete genome, stra... 54 1e-05
gb|CP000786.1| Leptospira biflexa serovar Patoc strain 'Patoc 1 ... 54 1e-05
gb|CP000777.1| Leptospira biflexa serovar Patoc strain 'Patoc 1 ... 54 1e-05
gb|CP000352.1| Ralstonia metallidurans CH34, complete genome 54 2e-05
gb|CP001068.1| Ralstonia pickettii 12J chromosome 1, complete se... 54 2e-05
emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome comple... 53 3e-05
emb|CU861906.1| Ralstonia solanacearum strain MolK2 Genome Draft 52 4e-05
emb|CU914168.1| Ralstonia solanacearum strain IPO1609 Genome Draft 52 5e-05
emb|CR606328.1| full-length cDNA clone CS0DM004YB21 of Fetal liv... 52 5e-05
emb|AM260479.1| Ralstonia eutropha H16 chromosome 1 52 8e-05
gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete ... 52 8e-05
emb|CU633749.1| Cupriavidus taiwanensis str. LMG19424 chromosome... 50 2e-04
gb|AC182716.2| Populus trichocarpa clone Pop1-88J20, complete se... 50 3e-04
gb|AF524844.1|AF524841S4 Homo sapiens methylmalonic aciduria typ... 45 0.007
gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, compl... 44 0.024
gb|CP001052.1| Burkholderia phytofirmans PsJN chromosome 1, comp... 43 0.036
gb|AF524845.1|AF524841S5 Homo sapiens methylmalonic aciduria typ... 40 0.30
gb|CP001043.1| Burkholderia phymatum STM815 chromosome 1, comple... 39 0.43
gb|CP000094.1| Pseudomonas fluorescens Pf0-1, complete genome 38 1.2
gb|CP000361.1| Arcobacter butzleri RM4018, complete genome 37 2.7
>emb|AM494940.1| Leishmania braziliensis chromosome 3
Length = 388728
Score = 335 bits (860), Expect = 2e-90, Method: Composition-based stats.
Identities = 166/166 (100%), Positives = 166/166 (100%)
Frame = +3
Query: 1 HGSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGV 60
HGSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGV
Sbjct: 176688 HGSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGV 176867
Query: 61 GQSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAY 120
GQSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAY
Sbjct: 176868 GQSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAY 177047
Query: 121 TRAVMYTEAKQGFEKPVLAVSAEERTNVPELWEAMMKMWNTRVESG 166
TRAVMYTEAKQGFEKPVLAVSAEERTNVPELWEAMMKMWNTRVESG
Sbjct: 177048 TRAVMYTEAKQGFEKPVLAVSAEERTNVPELWEAMMKMWNTRVESG 177185
>ref|XM_001561591.1| Leishmania braziliensis MHOM/BR/75/M2904 kinase-like protein
(LbrM03_V2.0510) partial mRNA
Length = 1062
Score = 335 bits (859), Expect = 3e-90, Method: Composition-based stats.
Identities = 166/166 (100%), Positives = 166/166 (100%)
Frame = +1
Query: 1 HGSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGV 60
HGSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGV
Sbjct: 313 HGSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGV 492
Query: 61 GQSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAY 120
GQSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAY
Sbjct: 493 GQSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAY 672
Query: 121 TRAVMYTEAKQGFEKPVLAVSAEERTNVPELWEAMMKMWNTRVESG 166
TRAVMYTEAKQGFEKPVLAVSAEERTNVPELWEAMMKMWNTRVESG
Sbjct: 673 TRAVMYTEAKQGFEKPVLAVSAEERTNVPELWEAMMKMWNTRVESG 810
>ref|XM_001467501.1| Leishmania infantum JPCM5 kinase like protein (LinJ31.2800) partial
mRNA
Length = 1050
Score = 288 bits (736), Expect = 5e-76, Method: Composition-based stats.
Identities = 152/166 (91%), Positives = 157/166 (94%)
Frame = +1
Query: 1 HGSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGV 60
HGSILGDKTRMEKLG H NSYIRPSPSGGHLGGVTSRAWEVLEIFEAA+FDVVFVETVGV
Sbjct: 316 HGSILGDKTRMEKLGTHLNSYIRPSPSGGHLGGVTSRAWEVLEIFEAASFDVVFVETVGV 495
Query: 61 GQSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAY 120
GQSETQCKDLTDMMILLVPPASGDELQGIKKG+VEVADMVVVTKNDG RK L QQT SAY
Sbjct: 496 GQSETQCKDLTDMMILLVPPASGDELQGIKKGVVEVADMVVVTKNDGRRKPLVQQTTSAY 675
Query: 121 TRAVMYTEAKQGFEKPVLAVSAEERTNVPELWEAMMKMWNTRVESG 166
RAVMYTE KQGFEKPV+AVSAEE TNVPELWEAMM+MWNTR+ESG
Sbjct: 676 ARAVMYTEKKQGFEKPVIAVSAEEGTNVPELWEAMMQMWNTRLESG 813
>emb|AM502249.1| Leishmania infantum chromosome 31
Length = 1744348
Score = 287 bits (734), Expect = 8e-76, Method: Composition-based stats.
Identities = 152/166 (91%), Positives = 157/166 (94%)
Frame = -1
Query: 1 HGSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGV 60
HGSILGDKTRMEKLG H NSYIRPSPSGGHLGGVTSRAWEVLEIFEAA+FDVVFVETVGV
Sbjct: 1313023 HGSILGDKTRMEKLGTHLNSYIRPSPSGGHLGGVTSRAWEVLEIFEAASFDVVFVETVGV 1312844
Query: 61 GQSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAY 120
GQSETQCKDLTDMMILLVPPASGDELQGIKKG+VEVADMVVVTKNDG RK L QQT SAY
Sbjct: 1312843 GQSETQCKDLTDMMILLVPPASGDELQGIKKGVVEVADMVVVTKNDGRRKPLVQQTTSAY 1312664
Query: 121 TRAVMYTEAKQGFEKPVLAVSAEERTNVPELWEAMMKMWNTRVESG 166
RAVMYTE KQGFEKPV+AVSAEE TNVPELWEAMM+MWNTR+ESG
Sbjct: 1312663 ARAVMYTEKKQGFEKPVIAVSAEEGTNVPELWEAMMQMWNTRLESG 1312526
>ref|XM_001687303.1| Leishmania major kinase-like protein (LmjF03.0610) mRNA, complete
cds
Length = 1050
Score = 285 bits (729), Expect = 4e-75, Method: Composition-based stats.
Identities = 150/166 (90%), Positives = 155/166 (93%)
Frame = +1
Query: 1 HGSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGV 60
HGSILGDKTRMEKLG H NSYIRPSPSGGHLGGVTSRAWE LEIFEAA FDVVFVETVGV
Sbjct: 316 HGSILGDKTRMEKLGTHLNSYIRPSPSGGHLGGVTSRAWEALEIFEAARFDVVFVETVGV 495
Query: 61 GQSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAY 120
GQSETQCKDLTDMMILLVPPASGDELQGIKKG+VEVADMVVVTKNDG RK L QQT+SAY
Sbjct: 496 GQSETQCKDLTDMMILLVPPASGDELQGIKKGVVEVADMVVVTKNDGRRKPLVQQTMSAY 675
Query: 121 TRAVMYTEAKQGFEKPVLAVSAEERTNVPELWEAMMKMWNTRVESG 166
RAVMYTE KQGFEKPV+AVSAEE TNVPELWEAM+KMWN R+ESG
Sbjct: 676 ARAVMYTEEKQGFEKPVIAVSAEEGTNVPELWEAMLKMWNARLESG 813
>gb|AC125735.1| Leishmania major strain Friedlin chromosome 3, complete sequence
Length = 384518
Score = 284 bits (727), Expect = 6e-75, Method: Composition-based stats.
Identities = 150/166 (90%), Positives = 155/166 (93%)
Frame = +2
Query: 1 HGSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGV 60
HGSILGDKTRMEKLG H NSYIRPSPSGGHLGGVTSRAWE LEIFEAA FDVVFVETVGV
Sbjct: 226787 HGSILGDKTRMEKLGTHLNSYIRPSPSGGHLGGVTSRAWEALEIFEAARFDVVFVETVGV 226966
Query: 61 GQSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAY 120
GQSETQCKDLTDMMILLVPPASGDELQGIKKG+VEVADMVVVTKNDG RK L QQT+SAY
Sbjct: 226967 GQSETQCKDLTDMMILLVPPASGDELQGIKKGVVEVADMVVVTKNDGRRKPLVQQTMSAY 227146
Query: 121 TRAVMYTEAKQGFEKPVLAVSAEERTNVPELWEAMMKMWNTRVESG 166
RAVMYTE KQGFEKPV+AVSAEE TNVPELWEAM+KMWN R+ESG
Sbjct: 227147 ARAVMYTEEKQGFEKPVIAVSAEEGTNVPELWEAMLKMWNARLESG 227284
>gb|CP000613.1| Rhodospirillum centenum SW, complete genome
Length = 4355548
Score = 162 bits (409), Expect = 4e-38, Method: Composition-based stats.
Identities = 85/155 (54%), Positives = 111/155 (71%), Gaps = 1/155 (0%)
Frame = -1
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRME+L HP+++IRPSP+G LGGV R E + + EAA FDVV VETVGVG
Sbjct: 3174598 GSILGDKTRMEELSRHPDAFIRPSPAGTTLGGVARRTREAMLLVEAAGFDVVIVETVGVG 3174419
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSET D+ D+ +LL+PPA GDELQGIKKGIVE+AD++VV K DG A++ ++ Y
Sbjct: 3174418 QSETAVADMVDLFLLLLPPAGGDELQGIKKGIVELADLIVVNKADGDLLAAARRAVAEYR 3174239
Query: 122 RAV-MYTEAKQGFEKPVLAVSAEERTNVPELWEAM 155
A+ M A + PVL+ SA R+ +PE+W+ +
Sbjct: 3174238 HALAMLRPASPHWRVPVLSCSAATRSGIPEVWDTV 3174134
>gb|CP001364.1| Chloroflexus sp. Y-400-fl, complete genome
Length = 5268950
Score = 159 bits (402), Expect = 3e-37, Method: Composition-based stats.
Identities = 83/166 (50%), Positives = 110/166 (66%), Gaps = 1/166 (0%)
Frame = -1
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRME+L HPN+YIRPSPSGG LGGV ++ E L + EAA FD+V VETVGVG
Sbjct: 3336530 GSILGDKTRMERLARHPNAYIRPSPSGGSLGGVARKSRETLLLCEAAGFDIVLVETVGVG 3336351
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSET + + D +LL+ +GDELQGIKKG++E+AD +V+TK DG + A + Y
Sbjct: 3336350 QSETAVRGMVDFFLLLMLAGAGDELQGIKKGVIELADALVITKADGDNRARAMAAQAEYR 3336171
Query: 122 RAVMY-TEAKQGFEKPVLAVSAEERTNVPELWEAMMKMWNTRVESG 166
A+ Y T A G++ PV SA + + E+W+ + + SG
Sbjct: 3336170 HALRYLTPATPGWKPPVRTCSALTGSGIAEIWQEIERFRAEMTASG 3336033
Score = 84.3 bits (207), Expect = 1e-14, Method: Composition-based stats.
Identities = 42/105 (40%), Positives = 62/105 (59%)
Frame = +1
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
G++LGD+ RM+ LG P +IR S G +GG+ + + + AA F V+ +ETVG G
Sbjct: 51226 GAVLGDRIRMQALGGDPGVFIRSMASRGRMGGLARATADAVTLIAAAGFPVILIETVGAG 51405
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKND 106
Q E D I++ P GD++Q IK G++E+AD+ VV K D
Sbjct: 51406 QDEVDIAQAADTTIVVEVPGMGDDVQSIKAGMLEIADVFVVNKAD 51540
>gb|CP000909.1| Chloroflexus aurantiacus J-10-fl, complete genome
Length = 5258541
Score = 159 bits (402), Expect = 3e-37, Method: Composition-based stats.
Identities = 83/166 (50%), Positives = 110/166 (66%), Gaps = 1/166 (0%)
Frame = -2
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRME+L HPN+YIRPSPSGG LGGV ++ E L + EAA FD+V VETVGVG
Sbjct: 3341513 GSILGDKTRMERLARHPNAYIRPSPSGGSLGGVARKSRETLLLCEAAGFDIVLVETVGVG 3341334
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSET + + D +LL+ +GDELQGIKKG++E+AD +V+TK DG + A + Y
Sbjct: 3341333 QSETAVRGMVDFFLLLMLAGAGDELQGIKKGVIELADALVITKADGDNRARAMAAQAEYR 3341154
Query: 122 RAVMY-TEAKQGFEKPVLAVSAEERTNVPELWEAMMKMWNTRVESG 166
A+ Y T A G++ PV SA + + E+W+ + + SG
Sbjct: 3341153 HALRYLTPATPGWKPPVRTCSALTGSGIAEIWQEIERFRAEMTASG 3341016
Score = 84.3 bits (207), Expect = 1e-14, Method: Composition-based stats.
Identities = 42/105 (40%), Positives = 62/105 (59%)
Frame = +2
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
G++LGD+ RM+ LG P +IR S G +GG+ + + + AA F V+ +ETVG G
Sbjct: 51263 GAVLGDRIRMQALGGDPGVFIRSMASRGRMGGLARATADAVTLIAAAGFPVILIETVGAG 51442
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKND 106
Q E D I++ P GD++Q IK G++E+AD+ VV K D
Sbjct: 51443 QDEVDIAQAADTTIVVEVPGMGDDVQSIKAGMLEIADVFVVNKAD 51577
>gb|BC151912.1| Danio rerio methylmalonic aciduria (cobalamin deficiency) cblA
type, mRNA (cDNA clone MGC:171657 IMAGE:7451000),
complete cds
Length = 1710
Score = 158 bits (400), Expect = 5e-37, Method: Composition-based stats.
Identities = 83/166 (50%), Positives = 111/166 (66%), Gaps = 1/166 (0%)
Frame = +2
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GS++GDKTRM +L N+YIRPSP+ G LGGVT E + + E A +D+V VETVGVG
Sbjct: 728 GSLMGDKTRMTELSRDMNAYIRPSPTSGTLGGVTRTTNEAIVLCEGAGYDIVLVETVGVG 907
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSE D+ DM +LL+PPA GDELQGIK+GI+E+AD+VVVTK+DG + A++ + YT
Sbjct: 908 QSEFAVADMVDMFVLLIPPAGGDELQGIKRGIIEMADLVVVTKSDGELVVPARKIQAEYT 1087
Query: 122 RAVMYTEAKQGFEKP-VLAVSAEERTNVPELWEAMMKMWNTRVESG 166
A+ K KP V+ +S++ VPELWE M+ + SG
Sbjct: 1088SALKLLRKKSKVWKPKVVRISSQTGQGVPELWETMLHFREEMLSSG 1225
>ref|XM_002131081.1| PREDICTED: Ciona intestinalis similar to methylmalonic aciduria
(cobalamin deficiency) cblA type (LOC100176855), mRNA
Length = 1216
Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats.
Identities = 76/166 (45%), Positives = 108/166 (65%), Gaps = 1/166 (0%)
Frame = +1
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GS+LGDKTRM L + PN+Y+RPSPS G LGGV E +++ E A +DV+ VETVGVG
Sbjct: 511 GSLLGDKTRMSMLSVEPNAYVRPSPSSGELGGVARNTMEAIQLCEGAGYDVIIVETVGVG 690
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSE D+TD+ L++PPA GDELQG+K+GI+E D+++V K+DG + A++ + YT
Sbjct: 691 QSEVAVGDMTDIFTLIIPPAGGDELQGLKRGIIENCDIIMVNKSDGDLIIPARKIQTEYT 870
Query: 122 RAVMYTEAKQGFEKP-VLAVSAEERTNVPELWEAMMKMWNTRVESG 166
A+ + K +P V +SA T + E W+ MM ++ SG
Sbjct: 871 SALKFIPRKHKVWRPRVTRISALTNTGIAESWKTMMSLFEVLNSSG 1008
>dbj|AK115014.1| Ciona intestinalis cDNA, clone:cieg026p13, full insert sequence
Length = 1238
Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats.
Identities = 76/166 (45%), Positives = 108/166 (65%), Gaps = 1/166 (0%)
Frame = +2
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GS+LGDKTRM L + PN+Y+RPSPS G LGGV E +++ E A +DV+ VETVGVG
Sbjct: 509 GSLLGDKTRMSMLSVEPNAYVRPSPSSGELGGVARDTMEAIQLCEGAGYDVIIVETVGVG 688
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSE D+TD+ L++PPA GDELQG+K+GI+E D+++V K+DG + A++ + YT
Sbjct: 689 QSEVAVGDMTDIFTLIIPPAGGDELQGLKRGIIENCDIIMVNKSDGDLIIPARKIQTEYT 868
Query: 122 RAVMYTEAKQGFEKP-VLAVSAEERTNVPELWEAMMKMWNTRVESG 166
A+ + K +P V +SA T + E W+ MM ++ SG
Sbjct: 869 SALKFIPRKHKVWRPRVTRISALTNTGIAESWKTMMSLFEVLNSSG 1006
>gb|CP001337.1| Chloroflexus aggregans DSM 9485, complete genome
Length = 4684931
Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats.
Identities = 82/157 (52%), Positives = 105/157 (66%), Gaps = 1/157 (0%)
Frame = +1
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRME+L HPN+YIRPSPSGG LGGV + E L + EAA FD+V VETVGVG
Sbjct: 1675468 GSILGDKTRMERLARHPNAYIRPSPSGGSLGGVARKTRETLLLCEAAGFDIVLVETVGVG 1675647
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSET + + D +LL+ +GDELQGIKKG++E+AD +VVTK DG K A + Y
Sbjct: 1675648 QSETAVRGMVDFFLLLMLAGAGDELQGIKKGVIELADALVVTKADGDNKPRAIAAQAEYR 1675827
Query: 122 RAVMY-TEAKQGFEKPVLAVSAEERTNVPELWEAMMK 157
A+ Y T A G++ PV SA + +W+ + +
Sbjct: 1675828 HALRYLTPATPGWKPPVRTCSAVTGEGIAAIWQEIER 1675938
Score = 85.1 bits (209), Expect = 7e-15, Method: Composition-based stats.
Identities = 43/105 (40%), Positives = 62/105 (59%)
Frame = -3
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
G++LGD+ RM+ LG P +IR S G +GG+ + + + AA F VV +ETVG G
Sbjct: 728031 GAVLGDRIRMQALGGDPGVFIRSMASRGRMGGLARATADAVTLIAAAGFSVVLIETVGAG 727852
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKND 106
Q E D I++ P GD++Q IK G++E+AD+ VV K D
Sbjct: 727851 QDEVDIAQTADTTIVVEVPGMGDDVQSIKAGMLEIADIFVVNKAD 727717
>gb|CP000804.1| Roseiflexus castenholzii DSM 13941, complete genome
Length = 5723298
Score = 154 bits (389), Expect = 8e-36, Method: Composition-based stats.
Identities = 80/166 (48%), Positives = 108/166 (65%), Gaps = 1/166 (0%)
Frame = +1
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRME+L HPN+YIRPSP+GG LGGV ++ E L + EAA FD+V VETVGVG
Sbjct: 5064895 GSILGDKTRMERLSRHPNAYIRPSPTGGSLGGVARKSRETLLLCEAAGFDIVLVETVGVG 5065074
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSE + + D +LL+ +GDELQGIKKGI+E+AD +++TK DG + A + YT
Sbjct: 5065075 QSEIAVRGMVDFFLLLMLAGAGDELQGIKKGIIELADALLITKADGDNRARALAAQAEYT 5065254
Query: 122 RAVMY-TEAKQGFEKPVLAVSAEERTNVPELWEAMMKMWNTRVESG 166
A+ Y T A +G+ SA+ + E+W + + + SG
Sbjct: 5065255 HALRYLTPATEGWRPRAYICSAQTGEGIAEIWREIERFRDETTASG 5065392
Score = 90.1 bits (222), Expect = 2e-16, Method: Composition-based stats.
Identities = 54/153 (35%), Positives = 83/153 (54%), Gaps = 11/153 (7%)
Frame = +2
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
G++LGD+ RM+ L P +IR S G LGG+ + + + +AA FD+V +ETVG G
Sbjct: 3892724 GALLGDRIRMQALSGDPGVFIRSMASRGRLGGIARATGDAVALLDAAGFDLVLIETVGAG 3892903
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGS------RKL---- 111
Q E + I++ P +GD++Q IK GI+E+AD++VV K D R+L
Sbjct: 3892904 QGEVEIAAAAHTTIVIEIPGAGDDIQAIKAGILEIADVLVVNKADRDGAEQTVRQLRAML 3893083
Query: 112 -LAQQTISAYTRAVMYTEAKQGFEKPVLAVSAE 143
LA + +T V+ A +G +A +AE
Sbjct: 3893084 SLADLPVDGWTPPVLTAVAMRGEGIEAIATAAE 3893182
>gb|CP000686.1| Roseiflexus sp. RS-1, complete genome
Length = 5801598
Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats.
Identities = 79/166 (47%), Positives = 108/166 (65%), Gaps = 1/166 (0%)
Frame = +2
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRME+L HPN+YIRPSP+GG LGGV ++ E L + EAA FD++ VETVGVG
Sbjct: 683735 GSILGDKTRMERLARHPNAYIRPSPTGGSLGGVARKSRETLLVCEAAGFDIILVETVGVG 683914
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSE + + D +LL+ +GDELQGIKKGI+E+AD +++TK DG + A + YT
Sbjct: 683915 QSEIAVRGMVDFFLLLMLAGAGDELQGIKKGIIELADALLITKADGDNRTRALAAQAEYT 684094
Query: 122 RAVMY-TEAKQGFEKPVLAVSAEERTNVPELWEAMMKMWNTRVESG 166
A+ Y T A +G+ SA+ + E+W + + + SG
Sbjct: 684095 HALRYLTPATEGWRPRAYICSAQTGEGIAEIWREIERFRDETTASG 684232
Score = 92.4 bits (228), Expect = 4e-17, Method: Composition-based stats.
Identities = 45/105 (42%), Positives = 66/105 (62%)
Frame = +3
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
G+ILGD+ RM+ L P ++IR S G LGG+ + + + +AA FDV+ VETVG G
Sbjct: 2512212 GAILGDRIRMQALSGDPGTFIRSMASRGRLGGIARATGDAVALLDAAGFDVILVETVGAG 2512391
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKND 106
Q E + I++ P +GD++Q IK GI+E+AD++VV K D
Sbjct: 2512392 QGEVEIAAAAHTTIVIETPGAGDDVQAIKAGILEIADLLVVNKAD 2512526
>dbj|AP009384.1| Azorhizobium caulinodans ORS 571 DNA, complete genome
Length = 5369772
Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats.
Identities = 83/156 (53%), Positives = 105/156 (67%), Gaps = 1/156 (0%)
Frame = -2
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRM +LG PN++IRPSPSGG LGG ++ E + + EAA FDVV VETVGVG
Sbjct: 1748978 GSILGDKTRMARLGTDPNAFIRPSPSGGTLGGTAAKTRETMLLCEAAGFDVVLVETVGVG 1748799
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSET DLTD ++L+ P +GDELQGIKKG++E+AD+V V K DG A+ Y
Sbjct: 1748798 QSETAVADLTDTFLVLMLPGAGDELQGIKKGVLELADIVAVNKADGDNLPRARAAAGEYR 1748619
Query: 122 RAVMYTEAKQGFEKP-VLAVSAEERTNVPELWEAMM 156
A+ A+Q F P VL SA V ++WEA++
Sbjct: 1748618 AALHLLGARQPFWSPRVLTYSALTDDGVAQVWEAVL 1748511
Score = 72.0 bits (175), Expect = 5e-11, Method: Composition-based stats.
Identities = 48/154 (31%), Positives = 84/154 (54%)
Frame = +1
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
G++LGD+ R++ ++R + LGG++ A + A +D+V VETVGVG
Sbjct: 4196572 GALLGDRARIQTDPEDRGVFVRSMAARDRLGGLSDDA-VAAAVLLRAVYDLVIVETVGVG 4196748
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSE + D ++L + PASGD LQ +K G++E+ D++VVTK D + ++++ + +
Sbjct: 4196749 QSEADIDLIADTVVLCIQPASGDSLQFMKAGVMELPDVIVVTKADMAE--MSRRAAADVS 4196922
Query: 122 RAVMYTEAKQGFEKPVLAVSAEERTNVPELWEAM 155
A+ + PV+ +SA + EA+
Sbjct: 4196923 GALALAGEDGAWRVPVIRLSAATGEGIDAFAEAV 4197024
>ref|XM_002213392.1| Branchiostoma floridae hypothetical protein (BRAFLDRAFT_214970)
mRNA, complete cds
Length = 861
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 83/165 (50%), Positives = 108/165 (65%), Gaps = 5/165 (3%)
Frame = +1
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GS+LGDKTRM +L N+YIRPSP+ G LGGV R E + + E A +DV+ VETVGVG
Sbjct: 139 GSLLGDKTRMPELSRDMNAYIRPSPTSGTLGGVNRRTNEAIVLCEGAGYDVILVETVGVG 318
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSE D+ DM +LLVPPA GDELQG+KKGIVEVAD+VVV K DG A++ + YT
Sbjct: 319 QSEFVVADMVDMFVLLVPPAGGDELQGLKKGIVEVADLVVVNKADGDLLPAARRIQAEYT 498
Query: 122 RAVMYTEAKQGFEKP-VLAVSAEERTNVPELWEAMM----KMWNT 161
A+ + + KP V+ VS+ + +P+ W+ M K WN+
Sbjct: 499 SALKFVRPRSLVWKPRVIRVSSLTKEGIPKAWDRMTGFRNKTWNS 633
>ref|XR_011889.1| PREDICTED: Macaca mulatta similar to methylmalonic aciduria type A
(LOC702634), mRNA
Length = 2034
Score = 152 bits (383), Expect = 4e-35, Method: Composition-based stats.
Identities = 77/166 (46%), Positives = 107/166 (64%), Gaps = 1/166 (0%)
Frame = +2
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GS+LGDKTRM +L N+YIRPSP+ G LGGVT E + + E A +D++ +ETVGVG
Sbjct: 629 GSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGVTRTTNEAILLCEGAGYDIILIETVGVG 808
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSE D+ DM +LL+PPA GDELQGIK+GI+E+AD+V VTK+DG + A++ + Y
Sbjct: 809 QSEFAVADMVDMFVLLLPPAGGDELQGIKRGIIEMADLVAVTKSDGDLIVPARRIQAEYV 988
Query: 122 RAVMYTEAKQGFEKP-VLAVSAEERTNVPELWEAMMKMWNTRVESG 166
A+ + KP V+ +SA + E+W+ M N + SG
Sbjct: 989 SALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQNLMLASG 1126
>ref|XM_539752.2| PREDICTED: Canis familiaris similar to methylmalonic aciduria type A
(LOC482635), mRNA
Length = 2649
Score = 151 bits (381), Expect = 7e-35, Method: Composition-based stats.
Identities = 74/167 (44%), Positives = 108/167 (64%), Gaps = 2/167 (1%)
Frame = +1
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GS+LGDKTRM +L N+YIRPSP+ G LGGVT E + + E +D++ +ETVGVG
Sbjct: 1951 GSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGVTRTTNEAILLCEGGGYDIILIETVGVG 2130
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSE D+ DM +LL+PPA GDELQGIK+GI+E+AD+V +TK+DG + A++ + Y
Sbjct: 2131 QSEFAVADMVDMFVLLLPPAGGDELQGIKRGIIEMADLVAITKSDGDLIVPARRIQAEYV 2310
Query: 122 RAVMYTEAKQGFEKP--VLAVSAEERTNVPELWEAMMKMWNTRVESG 166
A+ + +P V+ +SA + E+W+ M + W+ + SG
Sbjct: 2311 SALKVLRKRSEVWRPKSVIRISARSGEGITEMWDKMKEFWDLMLASG 2451
>gb|BC149854.1| Bos taurus methylmalonic aciduria (cobalamin deficiency) cblA type,
mRNA (cDNA clone MGC:160125 IMAGE:8520707), complete cds
Length = 1408
Score = 151 bits (381), Expect = 8e-35, Method: Composition-based stats.
Identities = 78/166 (46%), Positives = 108/166 (65%), Gaps = 1/166 (0%)
Frame = +3
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GS+LGDKTRM +L N+YIRPSP+ G LGGVT E + + E +DV+ VETVGVG
Sbjct: 624 GSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGVTRTTNEAILLCEGGGYDVILVETVGVG 803
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSE D+ DM ILL+PPA GDELQGIK+GIVE+AD+V +TK+DG + A++ + Y
Sbjct: 804 QSEFAVADMVDMFILLLPPAGGDELQGIKRGIVEMADLVAITKSDGDLIVPARRIQAEYV 983
Query: 122 RAVMYTEAKQGFEKP-VLAVSAEERTNVPELWEAMMKMWNTRVESG 166
A+ + G +P V+ +SA+ + E+W+ M + + SG
Sbjct: 984 SALKLLRRRSGVWRPKVIRISAQSGEGITEMWDKMKEFQEVMLVSG 1121
>ref|XM_002240816.1| Branchiostoma floridae hypothetical protein (BRAFLDRAFT_243632)
mRNA, partial cds
Length = 822
Score = 151 bits (381), Expect = 8e-35, Method: Composition-based stats.
Identities = 82/165 (49%), Positives = 107/165 (64%), Gaps = 5/165 (3%)
Frame = +1
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GS+LGDKTRM +L N+YIRPSP+ G LGGV R E + + E A +DV+ VETVGVG
Sbjct: 139 GSLLGDKTRMPELSRDMNAYIRPSPTSGTLGGVNRRTNEAIVLCEGAGYDVILVETVGVG 318
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSE D+ DM +LLVPPA GDELQ +KKGIVEVAD+VVV K DG A++ + YT
Sbjct: 319 QSEFVVADMVDMFVLLVPPAGGDELQALKKGIVEVADLVVVNKADGDLLPAARRIQAEYT 498
Query: 122 RAVMYTEAKQGFEKP-VLAVSAEERTNVPELWEAMM----KMWNT 161
A+ + + KP V+ VS+ + +P+ W+ M K WN+
Sbjct: 499 SALKFVRPRSVVWKPRVIRVSSLTKEGIPKAWDRMTGFRNKTWNS 633
>gb|CP000781.1| Xanthobacter autotrophicus Py2, complete genome
Length = 5308934
Score = 150 bits (380), Expect = 9e-35, Method: Composition-based stats.
Identities = 81/166 (48%), Positives = 109/166 (65%), Gaps = 1/166 (0%)
Frame = -1
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRM +L + PN++IRPSPS G LGG+ ++ E + + EAA FDVV VETVGVG
Sbjct: 2783603 GSILGDKTRMSRLAVDPNAFIRPSPSSGTLGGIAAKTRETMLLCEAAGFDVVLVETVGVG 2783424
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSET DLTD ++L+ P +GDELQGIKKG++E+AD+V V K DG A+ Y
Sbjct: 2783423 QSETAVADLTDTFLVLMLPGAGDELQGIKKGVLELADIVAVNKADGDNITRARAAAGEYR 2783244
Query: 122 RAVMYTEAK-QGFEKPVLAVSAEERTNVPELWEAMMKMWNTRVESG 166
A+ A+ + PVL SA +PE+WE +++ T+ E+
Sbjct: 2783243 TALHLLGARLPHWSPPVLTYSALTGAGIPEVWE-QVRLHRTKCEAA 2783109
Score = 76.3 bits (186), Expect = 3e-12, Method: Composition-based stats.
Identities = 49/142 (34%), Positives = 82/142 (57%), Gaps = 1/142 (0%)
Frame = +3
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
G++LGD+ RM+ ++R + LGG++ + + + A +D+V VETVGVG
Sbjct: 2881713 GALLGDRARMKTDPEDRGVFVRSMAARDRLGGLSDDSVAAVVLLRAI-YDLVIVETVGVG 2881889
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSE + D ++L + PASGD LQ +K G++E+ D++VVTK D + +A++ S
Sbjct: 2881890 QSEADISLVADTVVLCIQPASGDSLQFMKAGVMELPDIIVVTKADMTE--VARRAASEVA 2882063
Query: 122 RAVMYT-EAKQGFEKPVLAVSA 142
A+ + G+ PV+ +SA
Sbjct: 2882064 GALSLSGSGAAGWTVPVIRLSA 2882129
>gb|BC149875.1| Bos taurus methylmalonic aciduria (cobalamin deficiency) cblA type,
mRNA (cDNA clone MGC:159868 IMAGE:8629974), complete cds
Length = 1423
Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats.
Identities = 78/166 (46%), Positives = 107/166 (64%), Gaps = 1/166 (0%)
Frame = +2
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GS+LGDKTRM +L N+YIRPSP+ G LGGVT E + + E +DV+ VETVGVG
Sbjct: 632 GSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGVTRTTNEAILLCEGGGYDVILVETVGVG 811
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSE D+ DM ILL+PPA GDELQGIK+GIVE+AD+V +TK+DG + A++ + Y
Sbjct: 812 QSEFAVADMVDMFILLLPPAGGDELQGIKRGIVEMADLVAITKSDGDLIVPARRIQAEYV 991
Query: 122 RAVMYTEAKQGFEKP-VLAVSAEERTNVPELWEAMMKMWNTRVESG 166
A+ + G +P V+ +SA + E+W+ M + + SG
Sbjct: 992 SALKLLRRRSGVWRPKVIRISARSGEGITEMWDKMKEFQEVMLVSG 1129
>ref|NM_172250.2| Homo sapiens methylmalonic aciduria (cobalamin deficiency) cblA
type (MMAA), nuclear gene encoding mitochondrial
protein, mRNA
Length = 5943
Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats.
Identities = 76/166 (45%), Positives = 107/166 (64%), Gaps = 1/166 (0%)
Frame = +2
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GS+LGDKTRM +L N+YIRPSP+ G LGGVT E + + E A +D++ +ETVGVG
Sbjct: 647 GSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGVTRTTNEAILLCEGAGYDIILIETVGVG 826
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSE D+ DM +LL+PPA GDELQGIK+GI+E+AD+V VTK+DG + A++ + Y
Sbjct: 827 QSEFAVADMVDMFVLLLPPAGGDELQGIKRGIIEMADLVAVTKSDGDLIVPARRIQAEYV 1006
Query: 122 RAVMYTEAKQGFEKP-VLAVSAEERTNVPELWEAMMKMWNTRVESG 166
A+ + KP V+ +SA + E+W+ M + + SG
Sbjct: 1007SALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQDLMLASG 1144
>gb|BC101179.2| Homo sapiens methylmalonic aciduria (cobalamin deficiency) cblA
type, mRNA (cDNA clone MGC:120011 IMAGE:40017263),
complete cds
Length = 1438
Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats.
Identities = 76/166 (45%), Positives = 107/166 (64%), Gaps = 1/166 (0%)
Frame = +3
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GS+LGDKTRM +L N+YIRPSP+ G LGGVT E + + E A +D++ +ETVGVG
Sbjct: 609 GSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGVTRTTNEAILLCEGAGYDIILIETVGVG 788
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSE D+ DM +LL+PPA GDELQGIK+GI+E+AD+V VTK+DG + A++ + Y
Sbjct: 789 QSEFAVADMVDMFVLLLPPAGGDELQGIKRGIIEMADLVAVTKSDGDLIVPARRIQAEYV 968
Query: 122 RAVMYTEAKQGFEKP-VLAVSAEERTNVPELWEAMMKMWNTRVESG 166
A+ + KP V+ +SA + E+W+ M + + SG
Sbjct: 969 SALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQDLMLASG 1106
>gb|BC101178.2| Homo sapiens methylmalonic aciduria (cobalamin deficiency) cblA
type, mRNA (cDNA clone MGC:120010 IMAGE:40017262),
complete cds
Length = 1438
Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats.
Identities = 76/166 (45%), Positives = 107/166 (64%), Gaps = 1/166 (0%)
Frame = +3
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GS+LGDKTRM +L N+YIRPSP+ G LGGVT E + + E A +D++ +ETVGVG
Sbjct: 609 GSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGVTRTTNEAILLCEGAGYDIILIETVGVG 788
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSE D+ DM +LL+PPA GDELQGIK+GI+E+AD+V VTK+DG + A++ + Y
Sbjct: 789 QSEFAVADMVDMFVLLLPPAGGDELQGIKRGIIEMADLVAVTKSDGDLIVPARRIQAEYV 968
Query: 122 RAVMYTEAKQGFEKP-VLAVSAEERTNVPELWEAMMKMWNTRVESG 166
A+ + KP V+ +SA + E+W+ M + + SG
Sbjct: 969 SALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQDLMLASG 1106
>dbj|AK126662.1| Homo sapiens cDNA FLJ44706 fis, clone BRACE3017253, highly similar
to Methylmalonic aciduria type A protein, mitochondrial
precursor
Length = 4599
Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats.
Identities = 76/166 (45%), Positives = 107/166 (64%), Gaps = 1/166 (0%)
Frame = +2
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GS+LGDKTRM +L N+YIRPSP+ G LGGVT E + + E A +D++ +ETVGVG
Sbjct: 647 GSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGVTRTTNEAILLCEGAGYDIILIETVGVG 826
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSE D+ DM +LL+PPA GDELQGIK+GI+E+AD+V VTK+DG + A++ + Y
Sbjct: 827 QSEFAVADMVDMFVLLLPPAGGDELQGIKRGIIEMADLVAVTKSDGDLIVPARRIQAEYV 1006
Query: 122 RAVMYTEAKQGFEKP-VLAVSAEERTNVPELWEAMMKMWNTRVESG 166
A+ + KP V+ +SA + E+W+ M + + SG
Sbjct: 1007SALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQDLMLASG 1144
>gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome
Length = 2467205
Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats.
Identities = 77/154 (50%), Positives = 100/154 (64%)
Frame = +1
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRM +L +HPN++IRPSPSGG LGGV R E + + EAA +DVV +ETVGVG
Sbjct: 1405372 GSILGDKTRMPRLTVHPNAFIRPSPSGGTLGGVARRTREAITLCEAAGYDVVLIETVGVG 1405551
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSETQ +TD+ +LL P +GDELQGIK+GI+E+AD+ VV K D K + T
Sbjct: 1405552 QSETQVAAMTDLFVLLTLPNAGDELQGIKRGIMELADLCVVNKADTDPKAATRAQTELTT 1405731
Query: 122 RAVMYTEAKQGFEKPVLAVSAEERTNVPELWEAM 155
+ T + L SA +PE+W+A+
Sbjct: 1405732 ALKLLTPKGAPWRPRALQASALTGAGIPEVWQAV 1405833
Score = 90.5 bits (223), Expect = 1e-16, Method: Composition-based stats.
Identities = 51/122 (41%), Positives = 72/122 (59%), Gaps = 6/122 (4%)
Frame = -3
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
G+ILGD+ RM + ++R S G LGG+++R +VL + E A FD V +ETVGVG
Sbjct: 1715844 GAILGDRIRMLRHHADAGVFVRSLASRGALGGLSARTMQVLALLEGAGFDWVMLETVGVG 1715665
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKND------GSRKLLAQQ 115
QSE D +L++ PA GD +Q K GI+E+AD++ V K D R+LLA Q
Sbjct: 1715664 QSEVDVAAACDHTLLVLTPAGGDGVQAFKAGIMEIADVIAVNKADLPGADRTVRELLAAQ 1715485
Query: 116 TI 117
+
Sbjct: 1715484 AL 1715479
>gb|BC101181.2| Homo sapiens methylmalonic aciduria (cobalamin deficiency) cblA
type, mRNA (cDNA clone MGC:120013 IMAGE:40017265),
complete cds
Length = 1437
Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats.
Identities = 76/166 (45%), Positives = 107/166 (64%), Gaps = 1/166 (0%)
Frame = +3
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GS+LGDKTRM +L N+YIRPSP+ G LGGVT E + + E A +D++ +ETVGVG
Sbjct: 609 GSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGVTRTTNEAILLCEGAGYDIILIETVGVG 788
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSE D+ DM +LL+PPA GDELQGIK+GI+E+AD+V VTK+DG + A++ + Y
Sbjct: 789 QSEFAVADMVDMFVLLLPPAGGDELQGIKRGIIEMADLVAVTKSDGDLIVPARRIQAEYV 968
Query: 122 RAVMYTEAKQGFEKP-VLAVSAEERTNVPELWEAMMKMWNTRVESG 166
A+ + KP V+ +SA + E+W+ M + + SG
Sbjct: 969 SALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQDLMLASG 1106
>ref|XM_526697.2| PREDICTED: Pan troglodytes methylmalonic aciduria type A (MMAA),
mRNA
Length = 5948
Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats.
Identities = 76/166 (45%), Positives = 107/166 (64%), Gaps = 1/166 (0%)
Frame = +1
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GS+LGDKTRM +L N+YIRPSP+ G LGGVT E + + E A +D++ +ETVGVG
Sbjct: 652 GSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGVTRTTNEAILLCEGAGYDIILIETVGVG 831
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSE D+ DM +LL+PPA GDELQGIK+GI+E+AD+V VTK+DG + A++ + Y
Sbjct: 832 QSEFAVADMVDMFVLLLPPAGGDELQGIKRGIIEMADLVAVTKSDGDLIVPARRIQAEYV 1011
Query: 122 RAVMYTEAKQGFEKP-VLAVSAEERTNVPELWEAMMKMWNTRVESG 166
A+ + KP V+ +SA + E+W+ M + + SG
Sbjct: 1012SALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQDLMLASG 1149
>gb|EZ011141.1| TSA: Acropora millepora SeqIndex12622, mRNA sequence
Length = 849
Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats.
Identities = 76/166 (45%), Positives = 106/166 (63%), Gaps = 1/166 (0%)
Frame = +1
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GS+LGDKTRM +L PN+YIRP P+ G LGGV E + + EAA +D + VETVGVG
Sbjct: 217 GSLLGDKTRMTELSRDPNAYIRPXPTSGTLGGVNRSTNEAILLCEAAGYDTILVETVGVG 396
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSE + DM +LL+PPA GDELQ IKKGIVE+AD+V++ K+DG + AQ+ + Y
Sbjct: 397 QSEIAVAHMVDMFVLLIPPAGGDELQAIKKGIVEMADIVLINKSDGDLIIPAQKIQTEYI 576
Query: 122 RAVMYTEAK-QGFEKPVLAVSAEERTNVPELWEAMMKMWNTRVESG 166
A+ K + + PVL +S+ + + WE M +N +++G
Sbjct: 577 SALKLLRKKSREWNPPVLRISSYTGDGIEKAWENMQHFYNIMLQNG 714
>gb|CP000489.1| Paracoccus denitrificans PD1222 chromosome 1, complete sequence
Length = 2852282
Score = 149 bits (375), Expect = 4e-34, Method: Composition-based stats.
Identities = 81/169 (47%), Positives = 109/169 (64%), Gaps = 4/169 (2%)
Frame = +2
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRME L PN++IRPSPS LGGV R E + + EAA FDVV +ETVGVG
Sbjct: 2435603 GSILGDKTRMETLSRDPNAFIRPSPSRAELGGVARRTRETVRLCEAAGFDVVLIETVGVG 2435782
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSET +++D+ ILL+ PA GDELQG+K+GI+E+AD+++V K DG + A +T++ Y
Sbjct: 2435783 QSETLVAEMSDLFILLLAPAGGDELQGVKRGIMEIADIILVNKADGDLRETAMRTVADYA 2435962
Query: 122 RAVMYTEAK----QGFEKPVLAVSAEERTNVPELWEAMMKMWNTRVESG 166
A+ + +GF K L VSA + + W M + + R E G
Sbjct: 2435963 GALRLLRKRPYDPEGFPK-ALPVSAYTGEGLDKAWSNMTWLADWRREHG 2436106
>ref|NM_001106174.1| Rattus norvegicus methylmalonic aciduria (cobalamin deficiency) cblA
type (Mmaa), nuclear gene encoding mitochondrial protein,
mRNA
Length = 3295
Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats.
Identities = 74/166 (44%), Positives = 108/166 (65%), Gaps = 1/166 (0%)
Frame = +1
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GS+LGDKTRM +L N+YIRPSP+ G LGGVT E + + E +D++ +ETVGVG
Sbjct: 982 GSLLGDKTRMTELSRDMNAYIRPSPTSGTLGGVTRTTNEAIVLCEGGGYDIILIETVGVG 1161
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSE D+ DM +LL+PPA GDELQGIK+GI+E+AD+VV+TK+DG + A++ + Y
Sbjct: 1162 QSEFAVADMVDMFVLLLPPAGGDELQGIKRGIIEMADLVVITKSDGDLVVPARRIQAEYV 1341
Query: 122 RAVMYTEAKQGFEKP-VLAVSAEERTNVPELWEAMMKMWNTRVESG 166
A+ + +P V+ +SA + E+W+ M + + + SG
Sbjct: 1342 SALKLLRRRSEVWRPKVIRISARSGEGITEMWDIMREFQHRMLASG 1479
>ref|XM_002180541.1| Phaeodactylum tricornutum CCAP 1055/1 predicted protein, mRNA
Length = 939
Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats.
Identities = 76/169 (44%), Positives = 112/169 (66%), Gaps = 4/169 (2%)
Frame = +1
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRM +L HP S++RP+P+ G LGG+ S +V+ + + A +++V +ETVG+G
Sbjct: 232 GSILGDKTRMFELSRHPRSFVRPAPAAGALGGLASYTDDVVSLCQTAGYELVLLETVGLG 411
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSE + DM++LL+PP GD+LQG+KKGI+EVADM++VTK DG+ A+ T + Y
Sbjct: 412 QSEVEVAQSVDMLLLLIPPGGGDDLQGVKKGIIEVADMIIVTKADGNLLSTAKMTAADYK 591
Query: 122 RAVMYTEAK---QGFEK-PVLAVSAEERTNVPELWEAMMKMWNTRVESG 166
A+ + AK QG+E PVL SA V +WE + + +++G
Sbjct: 592 GAMQFVHAKGRLQGWEHPPVLLASAVTEEGVSNIWEYVCRYRRDMIDTG 738
>ref|NM_133823.3| Mus musculus methylmalonic aciduria (cobalamin deficiency) type A
(Mmaa), nuclear gene encoding mitochondrial protein,
mRNA
Length = 2823
Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats.
Identities = 74/166 (44%), Positives = 108/166 (65%), Gaps = 1/166 (0%)
Frame = +1
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GS+LGDKTRM +L N+YIRPSP+ G LGGVT E + + E +D++ +ETVGVG
Sbjct: 625 GSLLGDKTRMIELSRDMNAYIRPSPTSGTLGGVTRTTNEAIVLCEGGGYDIILIETVGVG 804
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSE D+ DM +LL+PPA GDELQGIK+GI+E+AD+VV+TK+DG + A++ + Y
Sbjct: 805 QSEFAVADMVDMFVLLLPPAGGDELQGIKRGIIEMADLVVITKSDGDLIVPARRIQAEYV 984
Query: 122 RAVMYTEAKQGFEKP-VLAVSAEERTNVPELWEAMMKMWNTRVESG 166
A+ + +P V+ +SA + E+W+ M + + + SG
Sbjct: 985 SALKLLRRRSEVWRPKVIRISARSGEGITEMWDTMREFQHQMLASG 1122
>dbj|AK050255.1| Mus musculus adult male liver tumor cDNA, RIKEN full-length
enriched library, clone:C730031D01 product:hypothetical
ArgK protein containing protein, full insert sequence
Length = 2824
Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats.
Identities = 74/166 (44%), Positives = 108/166 (65%), Gaps = 1/166 (0%)
Frame = +2
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GS+LGDKTRM +L N+YIRPSP+ G LGGVT E + + E +D++ +ETVGVG
Sbjct: 626 GSLLGDKTRMIELSRDMNAYIRPSPTSGTLGGVTRTTNEAIVLCEGGGYDIILIETVGVG 805
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSE D+ DM +LL+PPA GDELQGIK+GI+E+AD+VV+TK+DG + A++ + Y
Sbjct: 806 QSEFAVADMVDMFVLLLPPAGGDELQGIKRGIIEMADLVVITKSDGDLIVPARRIQAEYV 985
Query: 122 RAVMYTEAKQGFEKP-VLAVSAEERTNVPELWEAMMKMWNTRVESG 166
A+ + +P V+ +SA + E+W+ M + + + SG
Sbjct: 986 SALKLLRRRSEVWRPKVIRISARSGEGITEMWDTMREFQHQMLASG 1123
>gb|BC021954.1| Mus musculus methylmalonic aciduria (cobalamin deficiency) type A,
mRNA (cDNA clone MGC:37960 IMAGE:5134853), complete cds
Length = 1325
Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats.
Identities = 74/166 (44%), Positives = 108/166 (65%), Gaps = 1/166 (0%)
Frame = +1
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GS+LGDKTRM +L N+YIRPSP+ G LGGVT E + + E +D++ +ETVGVG
Sbjct: 595 GSLLGDKTRMIELSRDMNAYIRPSPTSGTLGGVTRTTNEAIVLCEGGGYDIILIETVGVG 774
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSE D+ DM +LL+PPA GDELQGIK+GI+E+AD+VV+TK+DG + A++ + Y
Sbjct: 775 QSEFAVADMVDMFVLLLPPAGGDELQGIKRGIIEMADLVVITKSDGDLIVPARRIQAEYV 954
Query: 122 RAVMYTEAKQGFEKP-VLAVSAEERTNVPELWEAMMKMWNTRVESG 166
A+ + +P V+ +SA + E+W+ M + + + SG
Sbjct: 955 SALKLLRRRSEVWRPKVIRISARSGEGITEMWDTMREFQHQMLASG 1092
>ref|XM_001501875.1| PREDICTED: Equus caballus methylmalonic aciduria (cobalamin
deficiency) cblA type (MMAA), mRNA
Length = 1463
Score = 147 bits (372), Expect = 9e-34, Method: Composition-based stats.
Identities = 74/166 (44%), Positives = 107/166 (64%), Gaps = 1/166 (0%)
Frame = +2
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GS+LGDKTRM +L N+YIRPSP+ G LGGVT E + + E +D++ +ETVGVG
Sbjct: 617 GSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGVTRTTNEAILLCEGGGYDIILIETVGVG 796
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSE D+ DM ILL+PPA GDELQGIK+GI+E+AD+V +TK+DG + A++ + Y
Sbjct: 797 QSEFAVADMVDMFILLLPPAGGDELQGIKRGIIEMADLVAITKSDGDLIVPARRIQAEYV 976
Query: 122 RAVMYTEAKQGFEKP-VLAVSAEERTNVPELWEAMMKMWNTRVESG 166
A+ + +P V+ +SA + E+W+ M + + + SG
Sbjct: 977 SALKLLRRRSKVWRPKVIRISARSGEGITEMWDKMKEFQDLMLASG 1114
>gb|CP000830.1| Dinoroseobacter shibae DFL 12, complete genome
Length = 3789584
Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats.
Identities = 81/169 (47%), Positives = 107/169 (63%), Gaps = 4/169 (2%)
Frame = +1
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRME+L P ++IRPSPS HLGGV+ R E + + EAA FDVV +ETVGVG
Sbjct: 2749057 GSILGDKTRMERLSRAPEAFIRPSPSLSHLGGVSRRTREAVALVEAAGFDVVLIETVGVG 2749236
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSET +++D+ +LL+ PA GDELQG+K+GI+E AD+++V K DG K A +T + Y
Sbjct: 2749237 QSETMVAEMSDLFVLLLAPAGGDELQGVKRGIMETADLILVNKADGDLKSTATRTCADYA 2749416
Query: 122 RAVMY----TEAKQGFEKPVLAVSAEERTNVPELWEAMMKMWNTRVESG 166
A+ E +GF K L VSA + + W M + R G
Sbjct: 2749417 GALRLLRKRPEDPEGFPK-ALMVSAVTGLGLEQAWSEMQALAKWRQAEG 2749560
>ref|NM_001027131.3| Caenorhabditis elegans MethylMalonic Aciduria type A protein family
member (mmaa-1) (mmaa-1) mRNA, complete cds
Length = 1414
Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats.
Identities = 76/166 (45%), Positives = 112/166 (67%), Gaps = 1/166 (0%)
Frame = +1
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GS+LGD TRM++L +P +YIR SP+ G LGGVT E + + E A +D+V +ETVGVG
Sbjct: 508 GSVLGDLTRMQELSRNPKAYIRQSPTSGSLGGVTRGIHEAVILCEGAGYDIVIIETVGVG 687
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSET D+ DMM LL+ PA GDELQG+K+GI+E++D++VVTK+DG K A+ T + Y
Sbjct: 688 QSETSVSDMCDMMCLLLSPAHGDELQGVKRGIMEMSDLLVVTKDDGDLKAKAKMTQAEYI 867
Query: 122 RAVMYTEAKQGFEKP-VLAVSAEERTNVPELWEAMMKMWNTRVESG 166
A+ + + +P V+ S ++ +V E+ ++ + W+T ESG
Sbjct: 868 SALKFMRPRLDVWRPKVMRSSIMDKESVSEVCSSLYEFWDTIGESG 1005
>ref|NM_001027132.2| Caenorhabditis elegans MethylMalonic Aciduria type A protein family
member (mmaa-1) (mmaa-1) mRNA, complete cds
Length = 1196
Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 76/166 (45%), Positives = 112/166 (67%), Gaps = 1/166 (0%)
Frame = +3
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GS+LGD TRM++L +P +YIR SP+ G LGGVT E + + E A +D+V +ETVGVG
Sbjct: 504 GSVLGDLTRMQELSRNPKAYIRQSPTSGSLGGVTRGIHEAVILCEGAGYDIVIIETVGVG 683
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSET D+ DMM LL+ PA GDELQG+K+GI+E++D++VVTK+DG K A+ T + Y
Sbjct: 684 QSETSVSDMCDMMCLLLSPAHGDELQGVKRGIMEMSDLLVVTKDDGDLKAKAKMTQAEYI 863
Query: 122 RAVMYTEAKQGFEKP-VLAVSAEERTNVPELWEAMMKMWNTRVESG 166
A+ + + +P V+ S ++ +V E+ ++ + W+T ESG
Sbjct: 864 SALKFMRPRLDVWRPKVMRSSIMDKESVSEVCSSLYEFWDTIGESG 1001
>ref|XM_001510967.1| PREDICTED: Ornithorhynchus anatinus similar to methylmalonic
aciduria type A (LOC100080115), mRNA
Length = 1518
Score = 147 bits (370), Expect = 2e-33, Method: Composition-based stats.
Identities = 75/166 (45%), Positives = 107/166 (64%), Gaps = 1/166 (0%)
Frame = +1
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GS+LGDKTRM +L N+YIRPSP+ G LGGVT E + + E ++++ +ETVGVG
Sbjct: 823 GSLLGDKTRMTELSRDMNAYIRPSPTSGTLGGVTRTTNEAILLCEGGGYNILLIETVGVG 1002
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSE D+ DM +LL+PPA GDELQGIK+GI+E+AD+VVVTK DG + A++ + Y
Sbjct: 1003QSEFAVADMVDMFVLLLPPAGGDELQGIKRGIIEMADLVVVTKADGDLIVPARRIQTEYV 1182
Query: 122 RAVMYTEAKQGFEKP-VLAVSAEERTNVPELWEAMMKMWNTRVESG 166
A+ + P V+ +SA+ + E+WE M + + + SG
Sbjct: 1183SALKLLRKRSKVWSPKVMRISAKTGEGITEIWEKMREFQDLLLASG 1320
>gb|CP000774.1| Parvibaculum lavamentivorans DS-1, complete genome
Length = 3914745
Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats.
Identities = 80/154 (51%), Positives = 102/154 (66%), Gaps = 1/154 (0%)
Frame = +3
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRME L PN++IRPSPSGG LGGV R E + + EAA +DV+ +ETVGVG
Sbjct: 1845207 GSILGDKTRMELLARDPNAFIRPSPSGGTLGGVARRTREAMLLTEAAGYDVIMIETVGVG 1845386
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSET D+ DM +LL+ P GDELQGIK+GI+E+AD++VV K DG A++ Y
Sbjct: 1845387 QSETAVADMVDMFVLLLSPGGGDELQGIKRGIMELADLIVVNKADGDLIPAARRAQMEYK 1845566
Query: 122 RAVMYTEAKQGFEKP-VLAVSAEERTNVPELWEA 154
A+ K +P VL SA + + E+WEA
Sbjct: 1845567 TALHLMRPKSAAWQPHVLLASALKGEGLSEVWEA 1845668
>gb|U41105.2| Caenorhabditis elegans cosmid T02G5, complete sequence
Length = 31951
Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats.
Identities = 76/166 (45%), Positives = 112/166 (67%), Gaps = 1/166 (0%)
Frame = -2
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GS+LGD TRM++L +P +YIR SP+ G LGGVT E + + E A +D+V +ETVGVG
Sbjct: 31281 GSVLGDLTRMQELSRNPKAYIRQSPTSGSLGGVTRGIHEAVILCEGAGYDIVIIETVGVG 31102
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSET D+ DMM LL+ PA GDELQG+K+GI+E++D++VVTK+DG K A+ T + Y
Sbjct: 31101 QSETSVSDMCDMMCLLLSPAHGDELQGVKRGIMEMSDLLVVTKDDGDLKAKAKMTQAEYI 30922
Query: 122 RAVMYTEAKQGFEKP-VLAVSAEERTNVPELWEAMMKMWNTRVESG 166
A+ + + +P V+ S ++ +V E+ ++ + W+T ESG
Sbjct: 30921 SALKFMRPRLDVWRPKVMRSSIMDKESVSEVCSSLYEFWDTIGESG 30784
>dbj|BA000004.3| Bacillus halodurans C-125 DNA, complete genome
Length = 4202352
Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 76/166 (45%), Positives = 109/166 (65%), Gaps = 1/166 (0%)
Frame = -3
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRME+L + N+Y+RPSPS G LGGVT R+ E L + EAA FDV+ VETVGVG
Sbjct: 3073813 GSILGDKTRMEELSRNKNAYVRPSPSSGTLGGVTRRSRETLLLCEAAGFDVIIVETVGVG 3073634
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSE + + D ++L+ +GDELQGIKKG++E+AD + + K DG + +A +T + Y
Sbjct: 3073633 QSEAVVRSMVDCFLVLMLTGAGDELQGIKKGVMEMADAIFINKADGPNRQVALKTKAEYN 3073454
Query: 122 RAVMY-TEAKQGFEKPVLAVSAEERTNVPELWEAMMKMWNTRVESG 166
R + + +A +G+E VSA + E+W+ + + E+G
Sbjct: 3073453 RLLHFLPQATEGWETKAYTVSALTGEGISEMWDVIYSFFQFSKENG 3073316
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 38/142 (26%), Positives = 73/142 (51%), Gaps = 3/142 (2%)
Frame = -3
Query: 2 GSILGDKTRMEKLGIH-PNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGV 60
G++LGD+ RM IH P ++R + G ++ + + + +AA +D+V VET G+
Sbjct: 3917464 GALLGDRIRMN--AIHSPRVFMRSLATRGSRTEISESIRDAIAVVKAAAYDLVIVETSGI 3917291
Query: 61 GQSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKND--GSRKLLAQQTIS 118
GQ + + ++ D+ + ++ G Q K +++ AD++ + K D GS L
Sbjct: 3917290 GQGDAEITEIADISMYVMTSEYGAPSQLEKIDMIDFADVIAINKFDRKGSEDAL------ 3917129
Query: 119 AYTRAVMYTEAKQGFEKPVLAV 140
+ R Y + Q F++P+ A+
Sbjct: 3917128 RHVRK-QYQRSHQRFDEPLEAM 3917066
>gb|CP001096.1| Rhodopseudomonas palustris TIE-1, complete genome
Length = 5744041
Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 79/166 (47%), Positives = 104/166 (62%), Gaps = 1/166 (0%)
Frame = -1
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRM +L P+++IRPSPS G LGGV ++ E + + EAA FDVV VETVG+G
Sbjct: 2206528 GSILGDKTRMARLSAEPDAFIRPSPSSGTLGGVAAKTREAMLLCEAAGFDVVLVETVGIG 2206349
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSET D+TD + L+ P +GDELQGIKKG+VE+ADM+ + K DG A Y
Sbjct: 2206348 QSETAVCDMTDFFLALMLPGAGDELQGIKKGLVELADMIAINKADGDNIKRANLAAGEYR 2206169
Query: 122 RAV-MYTEAKQGFEKPVLAVSAEERTNVPELWEAMMKMWNTRVESG 166
A+ + T ++ PV SA T + ELW+A++ SG
Sbjct: 2206168 AALHILTPRSPNWQPPVKTYSAMTGTGIAELWQAILDHRAATTPSG 2206031
>emb|BX572598.1| Rhodopseudomonas palustris CGA009 complete genome; segment 6/16
Length = 346879
Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 79/166 (47%), Positives = 104/166 (62%), Gaps = 1/166 (0%)
Frame = -3
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRM +L P+++IRPSPS G LGGV ++ E + + EAA FDVV VETVG+G
Sbjct: 312839 GSILGDKTRMARLSAEPDAFIRPSPSSGTLGGVAAKTREAMLLCEAAGFDVVLVETVGIG 312660
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSET D+TD + L+ P +GDELQGIKKG+VE+ADM+ + K DG A Y
Sbjct: 312659 QSETAVCDMTDFFLALMLPGAGDELQGIKKGLVELADMIAINKADGDNIKRANLAAGEYR 312480
Query: 122 RAV-MYTEAKQGFEKPVLAVSAEERTNVPELWEAMMKMWNTRVESG 166
A+ + T ++ PV SA T + ELW+A++ SG
Sbjct: 312479 AALHILTPRSPNWQPPVKTYSAMTGTGIAELWQAILDHRAATTPSG 312342
>emb|CU234118.1| Bradyrhizobium sp. ORS278,complete sequence
Length = 7456587
Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 78/166 (46%), Positives = 106/166 (63%), Gaps = 1/166 (0%)
Frame = -3
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRM +L H +++IRPSPS G LGGV ++ E + + EAA FDVV VETVG+G
Sbjct: 2878528 GSILGDKTRMARLSHHEHAFIRPSPSSGTLGGVAAKTREAMLLCEAAGFDVVLVETVGIG 2878349
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSET D+TD + L+ P GDELQGIKKG+VE+ADM+ + K DG A T + Y
Sbjct: 2878348 QSETAVCDMTDFFLALMLPGGGDELQGIKKGLVELADMIAINKADGDNVKRANITAADYR 2878169
Query: 122 RAV-MYTEAKQGFEKPVLAVSAEERTNVPELWEAMMKMWNTRVESG 166
A+ + + + + PV+ SA T + ELW+ ++ + SG
Sbjct: 2878168 GALHLLSPRSEHWHPPVVTYSAMAGTGIAELWQKVLDHRKAMIASG 2878031
>ref|XM_001641622.1| Nematostella vectensis predicted protein (NEMVEDRAFT_v1g196427)
partial mRNA
Length = 1140
Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats.
Identities = 77/166 (46%), Positives = 105/166 (63%), Gaps = 1/166 (0%)
Frame = +1
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GS+LGDKTRM +L P +YIRPSP+ G LGGV E + + EAA +D + VETVGVG
Sbjct: 436 GSLLGDKTRMTELSRDPKAYIRPSPTSGTLGGVHRSTNEAIILCEAAGYDTILVETVGVG 615
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSE + DM +LL+PPA GDELQGIKKGIVE+AD+V++ K DG + AQ+ + Y
Sbjct: 616 QSEYAVAHMVDMFVLLIPPAGGDELQGIKKGIVEMADLVLINKADGDLLIPAQRIQAEYI 795
Query: 122 RAVMYTEAKQG-FEKPVLAVSAEERTNVPELWEAMMKMWNTRVESG 166
A+ +K + PVL VS+ + + W++M + E+G
Sbjct: 796 SALKLLRSKSPLWSPPVLRVSSTTGDGIDKSWKSMQDFFTKMEETG 933
>ref|XM_002286138.1| Thalassiosira pseudonana CCMP1335 hypothetical protein, mRNA
Length = 1975
Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats.
Identities = 73/156 (46%), Positives = 105/156 (67%)
Frame = +2
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRM L HP +Y+RPSPS G LGG+ S + + + E A +++ VETVGVG
Sbjct: 497 GSILGDKTRMSNLSYHPRAYVRPSPSSGTLGGLGSYTSDAVSLCEFAGYNLTIVETVGVG 676
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
Q+E + + D+ +LL+ P GDELQG KKGIVEVAD++VV K+DG ++ A++T S Y
Sbjct: 677 QNEVELAECCDIFLLLLAPGGGDELQGSKKGIVEVADVLVVNKDDGDLQVTARRTASEYK 856
Query: 122 RAVMYTEAKQGFEKPVLAVSAEERTNVPELWEAMMK 157
+A+ G+ VL +SA+ +PELW+ +++
Sbjct: 857 KAIGLLRKPVGWWG-VLLISAKTGVGIPELWDTIVR 961
>gb|AE006470.1| Chlorobium tepidum TLS, complete genome
Length = 2154946
Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats.
Identities = 74/166 (44%), Positives = 110/166 (66%), Gaps = 1/166 (0%)
Frame = -1
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDK+RME+L HP ++IRP+PS G LGG + R E + + EAA ++V+ VETVGVG
Sbjct: 764263 GSILGDKSRMERLAAHPEAFIRPTPSSGFLGGTSPRTHETILLCEAAGYEVIIVETVGVG 764084
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSE + D ++LL+ P SGD+LQGIK+GI+E+AD+V V K D R+ +A+ + + +
Sbjct: 764083 QSEIVVNSMVDFVLLLMLPGSGDQLQGIKRGIMEIADLVAVNKADSGRQTIAENSKADFE 763904
Query: 122 RAV-MYTEAKQGFEKPVLAVSAEERTNVPELWEAMMKMWNTRVESG 166
A+ + E G+++ VL SA E + V E+W+ + +SG
Sbjct: 763903 AALRLLPEKHSGWKRKVLLTSALEGSGVSEVWKTIEAFAAAMQQSG 763766
>gb|CP000362.1| Roseobacter denitrificans OCh 114, complete genome
Length = 4133097
Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats.
Identities = 76/155 (49%), Positives = 104/155 (67%), Gaps = 4/155 (2%)
Frame = +1
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRM++L PN++IRPSPS HLGGV R E + + EAA FDVV +ETVGVG
Sbjct: 1616644 GSILGDKTRMDRLARAPNAFIRPSPSQTHLGGVARRTREAVALCEAAGFDVVLIETVGVG 1616823
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSET +++D+ +LL+ PA GDELQG+K+GI+E+ADM+++ K DG K A +T + Y
Sbjct: 1616824 QSETVVAEISDLFLLLLAPAGGDELQGVKRGIMEIADMILINKADGDLKPAATRTCADYA 1617003
Query: 122 RAVMYTEAK----QGFEKPVLAVSAEERTNVPELW 152
A+ + GF K + VSA + ++W
Sbjct: 1617004 GALRLLRKRPQDPDGFPKAAM-VSALNSIGLADVW 1617105
>gb|CP000943.1| Methylobacterium sp. 4-46, complete genome
Length = 7659055
Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats.
Identities = 79/157 (50%), Positives = 105/157 (66%), Gaps = 2/157 (1%)
Frame = +3
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRM +L + PN+YIRPSPS G LGGV ++ E + + EAA FDV+ VETVGVG
Sbjct: 2365539 GSILGDKTRMARLAVDPNAYIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVG 2365718
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSET DLTD ++L+ P +GDELQGIKKGI+E+ADM+ V K DG + + +A
Sbjct: 2365719 QSETAVADLTDFFLVLMLPGAGDELQGIKKGILELADMIAVNKADGEEGMRRARAAAAEY 2365898
Query: 122 RAVMY--TEAKQGFEKPVLAVSAEERTNVPELWEAMM 156
RA ++ T A + PV+ +S + LW A++
Sbjct: 2365899 RAALHILTPASATWTPPVVTISGLANQGLDGLWAAIL 2366009
>ref|XM_001175923.1| PREDICTED: Strongylocentrotus purpuratus similar to methylmalonic
aciduria type A (LOC591803), mRNA
Length = 1340
Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats.
Identities = 78/166 (46%), Positives = 107/166 (64%), Gaps = 1/166 (0%)
Frame = +1
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GS+LGDKTRM +L PN+YIR SPS G LGGVT + + + EAAN+DV+ VET+GVG
Sbjct: 361 GSLLGDKTRMTELSRDPNAYIRASPSAGTLGGVTRNTNDTILLCEAANYDVIIVETIGVG 540
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSE D+ DM++LL+PPA GDELQG+KKGIVE AD +++ K DG + A++ S YT
Sbjct: 541 QSEYVVADMVDMLVLLIPPAGGDELQGLKKGIVERADFILINKADGELLIPARRIRSEYT 720
Query: 122 RAVMYTEAKQGFEKP-VLAVSAEERTNVPELWEAMMKMWNTRVESG 166
AV + P V VS++ + + W+ M + +E+G
Sbjct: 721 SAVKLMYKRSPLWAPKVKQVSSKTGDGLSKAWDTMEEYRGIMMEAG 858
>ref|XM_791354.2| PREDICTED: Strongylocentrotus purpuratus similar to methylmalonic
aciduria type A (LOC591803), mRNA
Length = 1340
Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats.
Identities = 78/166 (46%), Positives = 107/166 (64%), Gaps = 1/166 (0%)
Frame = +1
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GS+LGDKTRM +L PN+YIR SPS G LGGVT + + + EAAN+DV+ VET+GVG
Sbjct: 361 GSLLGDKTRMTELSRDPNAYIRASPSAGTLGGVTRNTNDTILLCEAANYDVIIVETIGVG 540
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSE D+ DM++LL+PPA GDELQG+KKGIVE AD +++ K DG + A++ S YT
Sbjct: 541 QSEYVVADMVDMLVLLIPPAGGDELQGLKKGIVERADFILINKADGELLIPARRIRSEYT 720
Query: 122 RAVMYTEAKQGFEKP-VLAVSAEERTNVPELWEAMMKMWNTRVESG 166
AV + P V VS++ + + W+ M + +E+G
Sbjct: 721 SAVKLMYKRSPLWAPKVKQVSSKTGDGLSKAWDTMEEYRGIMMEAG 858
>ref|XM_640614.1| Dictyostelium discoideum AX4 hypothetical protein
(DDBDRAFT_0202803) partial mRNA
Length = 1248
Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats.
Identities = 75/155 (48%), Positives = 103/155 (66%), Gaps = 1/155 (0%)
Frame = +1
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRM +L + N+Y+RPS + G LGG+T + + + E+A +D+V VETVGVG
Sbjct: 535 GSILGDKTRMTELAVDENAYVRPSATRGSLGGITKGTSDTIILCESAGYDIVIVETVGVG 714
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSE D+ D +LLVPPA+GDELQG+KKGIVE AD+VVV K DG A+ T+S YT
Sbjct: 715 QSEVSIDDMVDCFVLLVPPANGDELQGLKKGIVESADIVVVNKADGELLPKARFTVSEYT 894
Query: 122 RAVMYTEAK-QGFEKPVLAVSAEERTNVPELWEAM 155
A K Q + V++ S+ + ++ ++W M
Sbjct: 895 SAFKLQRPKNQHWISKVVSCSSISKEHIDKVWNTM 999
>ref|XM_002107615.1| Trichoplax adhaerens hypothetical protein, mRNA
Length = 1077
Score = 145 bits (365), Expect = 6e-33, Method: Composition-based stats.
Identities = 76/168 (45%), Positives = 104/168 (61%), Gaps = 3/168 (1%)
Frame = +1
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GS+LGDKTRM L PN+YIRPSPS G+LGGVT E + + EA ++D++ VETVGVG
Sbjct: 376 GSLLGDKTRMADLSRDPNAYIRPSPSSGNLGGVTRTTNEAIVLCEATDYDIILVETVGVG 555
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSE D+ DM +LL+PPA GDELQGIK+GIVE+AD+ +VTK DG A++ YT
Sbjct: 556 QSEYAVADMVDMFVLLIPPAGGDELQGIKRGIVEMADLTLVTKADGDLMPAARRIQMEYT 735
Query: 122 RAVMYTEAKQGFE---KPVLAVSAEERTNVPELWEAMMKMWNTRVESG 166
A+ + + F+ V +S+ + W M + ++ G
Sbjct: 736 SAMKFVRRRLPFDIWLPSVFRISSVTGYGMDRAWSKMKQFHERMIDIG 879
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
Length = 5331656
Score = 145 bits (365), Expect = 6e-33, Method: Composition-based stats.
Identities = 76/156 (48%), Positives = 103/156 (66%), Gaps = 1/156 (0%)
Frame = +1
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRM +L P+++IRPSPS G LGGV ++ E + + EAA FDVV VETVG+G
Sbjct: 4053241 GSILGDKTRMARLSAEPDAFIRPSPSSGTLGGVAAKTREAMLLCEAAGFDVVLVETVGIG 4053420
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSET D+TD + L+ P +GDELQGIKKG+VE+ADM+ + K DG A Y
Sbjct: 4053421 QSETAVCDMTDFFLALMLPGAGDELQGIKKGLVELADMIAINKADGDNIARANLAAGEYR 4053600
Query: 122 RAV-MYTEAKQGFEKPVLAVSAEERTNVPELWEAMM 156
A+ + T ++ PV+ SA T + ELW++++
Sbjct: 4053601 AALHILTPRSPHWQPPVVTYSAITGTGIAELWQSVL 4053708
>gb|CP000264.1| Jannaschia sp. CCS1, complete genome
Length = 4317977
Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats.
Identities = 78/169 (46%), Positives = 108/169 (63%), Gaps = 4/169 (2%)
Frame = -2
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRM+ L P ++IRPSPS LGGV R E + + EAANFD+V +ETVGVG
Sbjct: 3503698 GSILGDKTRMDLLSREPRAFIRPSPSSAALGGVARRTREAIALCEAANFDMVLIETVGVG 3503519
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSET + D+ +LL+ PA GDELQG+K+GI+E+AD++++ K DG K A +T++ Y
Sbjct: 3503518 QSETMVAQMCDLFVLLLAPAGGDELQGVKRGIMEMADLILINKADGDLKATATRTVADYA 3503339
Query: 122 RAVMYTEAK----QGFEKPVLAVSAEERTNVPELWEAMMKMWNTRVESG 166
A+ + + F K LAVSA E + + W+ M + R + G
Sbjct: 3503338 GALRLLRKRPQDPKDFPK-ALAVSAVEGRGLEQAWDEMQALAAWRRDHG 3503195
>dbj|AP010918.1| Mycobacterium bovis BCG str. Tokyo 172 DNA, complete genome
Length = 4371711
Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats.
Identities = 79/159 (49%), Positives = 105/159 (66%), Gaps = 3/159 (1%)
Frame = +2
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRM +L +HPN+YIRPSP+ G LGGVT E + + EAA FDV+ +ETVGVG
Sbjct: 1685156 GSILGDKTRMARLAVHPNAYIRPSPTSGTLGGVTRATRETVVLLEAAGFDVILIETVGVG 1685335
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGS---RKLLAQQTIS 118
QSE ++ D +LL +GD+LQGIKKG++E+AD+VVV K DG LA + +S
Sbjct: 1685336 QSEVAVANMVDTFVLLTLARTGDQLQGIKKGVLELADIVVVNKADGEHHKEARLAARELS 1685515
Query: 119 AYTRAVMYTEAKQGFEKPVLAVSAEERTNVPELWEAMMK 157
A R + EA + PVL +SA E + ELW+ + +
Sbjct: 1685516 AAIRLIYPREAL--WRPPVLTMSAVEGRGLAELWDTVER 1685626
>gb|CP000717.1| Mycobacterium tuberculosis F11, complete genome
Length = 4424435
Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats.
Identities = 79/159 (49%), Positives = 105/159 (66%), Gaps = 3/159 (1%)
Frame = +1
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRM +L +HPN+YIRPSP+ G LGGVT E + + EAA FDV+ +ETVGVG
Sbjct: 1691827 GSILGDKTRMARLAVHPNAYIRPSPTSGTLGGVTRATRETVVLLEAAGFDVILIETVGVG 1692006
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGS---RKLLAQQTIS 118
QSE ++ D +LL +GD+LQGIKKG++E+AD+VVV K DG LA + +S
Sbjct: 1692007 QSEVAVANMVDTFVLLTLARTGDQLQGIKKGVLELADIVVVNKADGEHHKEARLAARELS 1692186
Query: 119 AYTRAVMYTEAKQGFEKPVLAVSAEERTNVPELWEAMMK 157
A R + EA + PVL +SA E + ELW+ + +
Sbjct: 1692187 AAIRLIYPREAL--WRPPVLTMSAVEGRGLAELWDTVER 1692297
>gb|CP000611.1| Mycobacterium tuberculosis H37Ra, complete genome
Length = 4419977
Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats.
Identities = 79/159 (49%), Positives = 105/159 (66%), Gaps = 3/159 (1%)
Frame = +1
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRM +L +HPN+YIRPSP+ G LGGVT E + + EAA FDV+ +ETVGVG
Sbjct: 1688707 GSILGDKTRMARLAVHPNAYIRPSPTSGTLGGVTRATRETVVLLEAAGFDVILIETVGVG 1688886
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGS---RKLLAQQTIS 118
QSE ++ D +LL +GD+LQGIKKG++E+AD+VVV K DG LA + +S
Sbjct: 1688887 QSEVAVANMVDTFVLLTLARTGDQLQGIKKGVLELADIVVVNKADGEHHKEARLAARELS 1689066
Query: 119 AYTRAVMYTEAKQGFEKPVLAVSAEERTNVPELWEAMMK 157
A R + EA + PVL +SA E + ELW+ + +
Sbjct: 1689067 AAIRLIYPREAL--WRPPVLTMSAVEGRGLAELWDTVER 1689177
>emb|AM408590.1| Mycobacterium bovis BCG Pasteur 1173P2, complete genome
Length = 4374522
Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats.
Identities = 79/159 (49%), Positives = 105/159 (66%), Gaps = 3/159 (1%)
Frame = +1
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRM +L +HPN+YIRPSP+ G LGGVT E + + EAA FDV+ +ETVGVG
Sbjct: 1712263 GSILGDKTRMARLAVHPNAYIRPSPTSGTLGGVTRATRETVVLLEAAGFDVILIETVGVG 1712442
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGS---RKLLAQQTIS 118
QSE ++ D +LL +GD+LQGIKKG++E+AD+VVV K DG LA + +S
Sbjct: 1712443 QSEVAVANMVDTFVLLTLARTGDQLQGIKKGVLELADIVVVNKADGEHHKEARLAARELS 1712622
Query: 119 AYTRAVMYTEAKQGFEKPVLAVSAEERTNVPELWEAMMK 157
A R + EA + PVL +SA E + ELW+ + +
Sbjct: 1712623 AAIRLIYPREAL--WRPPVLTMSAVEGRGLAELWDTVER 1712733
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome
Length = 4403837
Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats.
Identities = 79/159 (49%), Positives = 105/159 (66%), Gaps = 3/159 (1%)
Frame = +2
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRM +L +HPN+YIRPSP+ G LGGVT E + + EAA FDV+ +ETVGVG
Sbjct: 1687346 GSILGDKTRMARLAVHPNAYIRPSPTSGTLGGVTRATRETVVLLEAAGFDVILIETVGVG 1687525
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGS---RKLLAQQTIS 118
QSE ++ D +LL +GD+LQGIKKG++E+AD+VVV K DG LA + +S
Sbjct: 1687526 QSEVAVANMVDTFVLLTLARTGDQLQGIKKGVLELADIVVVNKADGEHHKEARLAARELS 1687705
Query: 119 AYTRAVMYTEAKQGFEKPVLAVSAEERTNVPELWEAMMK 157
A R + EA + PVL +SA E + ELW+ + +
Sbjct: 1687706 AAIRLIYPREAL--WRPPVLTMSAVEGRGLAELWDTVER 1687816
>gb|BC027398.1| Mus musculus methylmalonic aciduria (cobalamin deficiency) type A,
mRNA (cDNA clone IMAGE:4954586), partial cds
Length = 804
Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats.
Identities = 74/166 (44%), Positives = 108/166 (65%), Gaps = 1/166 (0%)
Frame = +1
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GS+LGDKTRM +L N+YIRPSP+ G LGGVT E + + E +D++ +ETVGVG
Sbjct: 55 GSLLGDKTRMIELSRDMNAYIRPSPTSGTLGGVTRTTNEAIVLCEGGGYDIILIETVGVG 234
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSE D+ DM +LL+PPA GDELQGIK+GI+E+AD+VV+TK+DG + A++ + Y
Sbjct: 235 QSEFAVADMVDMFVLLLPPAGGDELQGIKRGIIEMADLVVITKSDGDLIVPARRIQAEYV 414
Query: 122 RAVMYTEAKQGFEKP-VLAVSAEERTNVPELWEAMMKMWNTRVESG 166
A+ + +P V+ +SA + E+W+ M + + + SG
Sbjct: 415 SALKLLRRRSEVWRPKVIRISARSGEGITEMWDTMREFQHQMLASG 552
>emb|BX842576.1| Mycobacterium tuberculosis H37Rv complete genome; segment 5/13
Length = 348264
Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats.
Identities = 79/159 (49%), Positives = 105/159 (66%), Gaps = 3/159 (1%)
Frame = +1
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRM +L +HPN+YIRPSP+ G LGGVT E + + EAA FDV+ +ETVGVG
Sbjct: 304147 GSILGDKTRMARLAVHPNAYIRPSPTSGTLGGVTRATRETVVLLEAAGFDVILIETVGVG 304326
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGS---RKLLAQQTIS 118
QSE ++ D +LL +GD+LQGIKKG++E+AD+VVV K DG LA + +S
Sbjct: 304327 QSEVAVANMVDTFVLLTLARTGDQLQGIKKGVLELADIVVVNKADGEHHKEARLAARELS 304506
Query: 119 AYTRAVMYTEAKQGFEKPVLAVSAEERTNVPELWEAMMK 157
A R + EA + PVL +SA E + ELW+ + +
Sbjct: 304507 AAIRLIYPREAL--WRPPVLTMSAVEGRGLAELWDTVER 304617
>emb|BX248339.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment
6/14
Length = 300050
Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats.
Identities = 79/159 (49%), Positives = 105/159 (66%), Gaps = 3/159 (1%)
Frame = +3
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRM +L +HPN+YIRPSP+ G LGGVT E + + EAA FDV+ +ETVGVG
Sbjct: 69936 GSILGDKTRMARLAVHPNAYIRPSPTSGTLGGVTRATRETVVLLEAAGFDVILIETVGVG 70115
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGS---RKLLAQQTIS 118
QSE ++ D +LL +GD+LQGIKKG++E+AD+VVV K DG LA + +S
Sbjct: 70116 QSEVAVANMVDTFVLLTLARTGDQLQGIKKGVLELADIVVVNKADGEHHKEARLAARELS 70295
Query: 119 AYTRAVMYTEAKQGFEKPVLAVSAEERTNVPELWEAMMK 157
A R + EA + PVL +SA E + ELW+ + +
Sbjct: 70296 AAIRLIYPREAL--WRPPVLTMSAVEGRGLAELWDTVER 70406
>gb|AD000015.1|MSGY175 Mycobacterium tuberculosis sequence from clone y175
Length = 18106
Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats.
Identities = 79/159 (49%), Positives = 105/159 (66%), Gaps = 3/159 (1%)
Frame = +2
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRM +L +HPN+YIRPSP+ G LGGVT E + + EAA FDV+ +ETVGVG
Sbjct: 5858 GSILGDKTRMARLAVHPNAYIRPSPTSGTLGGVTRATRETVVLLEAAGFDVILIETVGVG 6037
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGS---RKLLAQQTIS 118
QSE ++ D +LL +GD+LQGIKKG++E+AD+VVV K DG LA + +S
Sbjct: 6038 QSEVAVANMVDTFVLLTLARTGDQLQGIKKGVLELADIVVVNKADGEHHKEARLAARELS 6217
Query: 119 AYTRAVMYTEAKQGFEKPVLAVSAEERTNVPELWEAMMK 157
A R + EA + PVL +SA E + ELW+ + +
Sbjct: 6218 AAIRLIYPREAL--WRPPVLTMSAVEGRGLAELWDTVER 6328
>gb|AD000001.1|MSGY456 Mycobacterium tuberculosis sequence from clone y456
Length = 37316
Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats.
Identities = 79/159 (49%), Positives = 105/159 (66%), Gaps = 3/159 (1%)
Frame = -2
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRM +L +HPN+YIRPSP+ G LGGVT E + + EAA FDV+ +ETVGVG
Sbjct: 26170 GSILGDKTRMARLAVHPNAYIRPSPTSGTLGGVTRATRETVVLLEAAGFDVILIETVGVG 25991
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGS---RKLLAQQTIS 118
QSE ++ D +LL +GD+LQGIKKG++E+AD+VVV K DG LA + +S
Sbjct: 25990 QSEVAVANMVDTFVLLTLARTGDQLQGIKKGVLELADIVVVNKADGEHHKEARLAARELS 25811
Query: 119 AYTRAVMYTEAKQGFEKPVLAVSAEERTNVPELWEAMMK 157
A R + EA + PVL +SA E + ELW+ + +
Sbjct: 25810 AAIRLIYPREAL--WRPPVLTMSAVEGRGLAELWDTVER 25700
>gb|BC085229.1| Mus musculus cDNA clone IMAGE:6441134, containing frame-shift
errors
Length = 5656
Score = 144 bits (363), Expect = 9e-33, Method: Composition-based stats.
Identities = 74/166 (44%), Positives = 108/166 (65%), Gaps = 1/166 (0%)
Frame = +3
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GS+LGDKTRM +L N+YIRPSP+ G LGGVT E + + E +D++ +ETVGVG
Sbjct: 603 GSLLGDKTRMIELSRDMNAYIRPSPTSGTLGGVTRTTNEAIVLCEGGGYDIILIETVGVG 782
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSE D+ DM +LL+PPA GDELQGIK+GI+E+AD+VV+TK+DG + A++ + Y
Sbjct: 783 QSEFAVADMVDMFVLLLPPAGGDELQGIKRGIIEMADLVVITKSDGDLIVPARRIQAEYV 962
Query: 122 RAVMYTEAKQGFEKP-VLAVSAEERTNVPELWEAMMKMWNTRVESG 166
A+ + +P V+ +SA + E+W+ M + + + SG
Sbjct: 963 SALKLLRRRSEVWRPKVIRISARSGEGITEMWDTMREFQHQMLASG 1100
>gb|CP000480.1| Mycobacterium smegmatis str. MC2 155, complete genome
Length = 6988209
Score = 144 bits (363), Expect = 9e-33, Method: Composition-based stats.
Identities = 75/166 (45%), Positives = 106/166 (63%), Gaps = 1/166 (0%)
Frame = +3
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRM +L +HP++YIRPSP+ G LGGV E + + EAA +DV+ VETVGVG
Sbjct: 3236388 GSILGDKTRMARLAVHPDAYIRPSPTSGTLGGVAKATRETIVLLEAAGYDVILVETVGVG 3236567
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSE + D + L +GD+LQGIKKG++E+AD++VV K DG + A+ +
Sbjct: 3236568 QSEVTVAGMVDTFVFLTLARTGDQLQGIKKGVLELADVIVVNKADGEHAVEAKAAARELS 3236747
Query: 122 RAVMYTEAKQG-FEKPVLAVSAEERTNVPELWEAMMKMWNTRVESG 166
A+ ++ + PVL +SA E T +PELWE +++ E+G
Sbjct: 3236748 GAIRLIYPRESLWRPPVLTMSAVEGTGLPELWETVLRHREVLEEAG 3236885
Score = 88.6 bits (218), Expect = 7e-16, Method: Composition-based stats.
Identities = 52/152 (34%), Positives = 85/152 (55%), Gaps = 3/152 (1%)
Frame = -2
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
G++LGD+ RM P+ IR + GHLGG+ + + + A ++D++ +ETVGVG
Sbjct: 4967447 GALLGDRIRMAAHINDPDVLIRSMAARGHLGGLAAAVPAAIRLLAALSYDLIVLETVGVG 4967268
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSE + + D ++++ P +GD +Q K G++EVAD+VVV K D + + A T
Sbjct: 4967267 QSEIEIAAIADPTVVILNPGAGDAVQAAKAGVLEVADLVVVNKADRDGADQTVRDLRAET 4967088
Query: 122 RA-VMYTEAKQ--GFEKPVLAVSAEERTNVPE 150
V+ A Q G + + A+ A +R + PE
Sbjct: 4967087 DVPVLKLVAAQGDGLHELIEAIEAHQRADTPE 4966992
>gb|CP000494.1| Bradyrhizobium sp. BTAi1, complete genome
Length = 8264687
Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 76/166 (45%), Positives = 104/166 (62%), Gaps = 1/166 (0%)
Frame = -3
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRM +L +++IRPSPS G LGGV ++ E + + EAA FDV+ VETVG+G
Sbjct: 3154689 GSILGDKTRMARLSHDEHAFIRPSPSSGTLGGVAAKTREAMLLCEAAGFDVILVETVGIG 3154510
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSET D+TD + L+ P GDELQGIKKG+VE+ADM+ + K DG A T + Y
Sbjct: 3154509 QSETAVCDMTDFFLALMLPGGGDELQGIKKGLVELADMIAINKADGDNLKRANITAADYR 3154330
Query: 122 RAV-MYTEAKQGFEKPVLAVSAEERTNVPELWEAMMKMWNTRVESG 166
A+ + + + PV+ SA T + ELW+ ++ + SG
Sbjct: 3154329 GALHLLAPRSEHWHPPVVTYSAMTGTGIAELWQKVLDHRKAMIASG 3154192
>gb|CP000820.1| Frankia sp. EAN1pec, complete genome
Length = 8982042
Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 77/166 (46%), Positives = 104/166 (62%), Gaps = 1/166 (0%)
Frame = +1
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRME L P ++IRPSP+ G LGGV E + I EAA +DVV VETVGVG
Sbjct: 2337877 GSILGDKTRMEALSADPAAFIRPSPTAGTLGGVAKATREAMVIMEAAGYDVVLVETVGVG 2338056
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSET D+ D + L +GD+LQGIKKG++E+AD++ V K DG +L A++
Sbjct: 2338057 QSETTVADMVDTFLFLTLARTGDQLQGIKKGVLELADVIAVNKADGPHELDARRAARELA 2338236
Query: 122 RAVMYTE-AKQGFEKPVLAVSAEERTNVPELWEAMMKMWNTRVESG 166
A+ + + ++ PVL SA ERT + +W ++K +T SG
Sbjct: 2338237 GAIRLLQGGAREWQTPVLTCSAAERTGLDTVWAQVLKHQDTLDASG 2338374
Score = 91.3 bits (225), Expect = 9e-17, Method: Composition-based stats.
Identities = 43/105 (40%), Positives = 68/105 (64%)
Frame = +2
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
G++LGD+ RM + P+ ++R + G+LGG++ + L + +AA FD+V +ETVGVG
Sbjct: 1225442 GALLGDRVRMVEHATDPDVFVRSLATRGNLGGLSWATPQALRVLDAAGFDIVLIETVGVG 1225621
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKND 106
Q+E L D ++L+ P GD +Q K GI+E+AD++VV K D
Sbjct: 1225622 QAEVDVASLADTTLVLLAPGMGDGIQAAKAGIMEIADILVVNKAD 1225756
Score = 79.0 bits (193), Expect = 4e-13, Method: Composition-based stats.
Identities = 42/105 (40%), Positives = 64/105 (60%)
Frame = -1
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
G++LGD+ RM P+ IR + GHLGG+ + + + +D+V VETVGVG
Sbjct: 5139843 GALLGDRIRMASHTNDPDVLIRSLAARGHLGGLAAAVPAAVRVLANLAYDLVLVETVGVG 5139664
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKND 106
QSE + + D I+++ P +GD +Q K G++EVAD++VV K D
Sbjct: 5139663 QSEIEIAAVADPTIVVLTPGAGDAVQAAKAGLLEVADLLVVNKAD 5139529
Score = 37.4 bits (85), Expect = 1.4, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 45/83 (54%), Gaps = 5/83 (6%)
Frame = +2
Query: 40 EVLEIFEAANFDVVFVETVGVGQSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADM 99
+++ +AA +D++ VET G+GQ + D+ + ++ P G Q K +++ AD+
Sbjct: 1281605 DIIAACKAAGYDLIIVETPGIGQGDAAIVPFCDVSMYVMTPEYGAASQLEKIDMLDFADV 1281784
Query: 100 VVVTK-----NDGSRKLLAQQTI 117
V V K + +R+ +A+Q +
Sbjct: 1281785 VAVNKFERRGAEDARRDVARQMV 1281853
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
Length = 4967148
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 80/166 (48%), Positives = 103/166 (62%), Gaps = 1/166 (0%)
Frame = -1
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRME L ++IRPSPSG LGGV R E + + EAA FDV+ VETVGVG
Sbjct: 4516200 GSILGDKTRMEDLSRDARAFIRPSPSGCTLGGVARRTREAMLVCEAAGFDVIVVETVGVG 4516021
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSET D+ DM +L++ P GDELQGIKKGIVE+AD ++V K DG A + Y
Sbjct: 4516020 QSETAVADMVDMFLLVLVPGGGDELQGIKKGIVELADAIIVNKADGDLAAAAARAARDYK 4515841
Query: 122 RAV-MYTEAKQGFEKPVLAVSAEERTNVPELWEAMMKMWNTRVESG 166
A+ + A + PVL SA R+ + E+W + +T ++G
Sbjct: 4515840 NALHLLAPASPHWTVPVLTCSALARSGIDEVWSTIATYRDTMDKAG 4515703
Score = 80.9 bits (198), Expect = 1e-13, Method: Composition-based stats.
Identities = 54/154 (35%), Positives = 77/154 (50%)
Frame = +2
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
G++LGD+TR+ ++R + LGG+ + + A FDVV +ETVGVG
Sbjct: 1663832 GALLGDRTRLTTDPEDQGIFVRSMAARDRLGGLAGLTVSAMVLMRAL-FDVVLIETVGVG 1664008
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSET + D ++ V P SGD LQ +K GI E+ +VVVTK D + +
Sbjct: 1664009 QSETDVVGVADTVLFCVQPGSGDSLQFMKAGIAEIPHVVVVTKADMGAAAVRARADVLGA 1664188
Query: 122 RAVMYTEAKQGFEKPVLAVSAEERTNVPELWEAM 155
+ G+E PVL VS+ R V L A+
Sbjct: 1664189 LGLGGGGDHDGWESPVLMVSSARREGVEGLVSAI 1664290
>dbj|AB126694.1| Magnetospirillum magneticum genes for periplasmic transport binding
protein kinase, putative Zn dependnt calboxypeptidase,
complete cds
Length = 3366
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 80/166 (48%), Positives = 103/166 (62%), Gaps = 1/166 (0%)
Frame = +1
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRME L ++IRPSPSG LGGV R E + + EAA FDV+ VETVGVG
Sbjct: 2644 GSILGDKTRMEDLSRDARAFIRPSPSGCTLGGVARRTREAMLVCEAAGFDVIVVETVGVG 2823
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSET D+ DM +L++ P GDELQGIKKGIVE+AD ++V K DG A + Y
Sbjct: 2824 QSETAVADMVDMFLLVLVPGGGDELQGIKKGIVELADAIIVNKADGDLAAAAARAARDYK 3003
Query: 122 RAV-MYTEAKQGFEKPVLAVSAEERTNVPELWEAMMKMWNTRVESG 166
A+ + A + PVL SA R+ + E+W + +T ++G
Sbjct: 3004 NALHLLAPASPHWTVPVLTCSALARSGIDEVWSTIATYRDTMDKAG 3141
>emb|FM211192.1| Mycobacterium leprae Br4923, complete genome sequence
Length = 3268071
Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats.
Identities = 77/157 (49%), Positives = 106/157 (67%), Gaps = 3/157 (1%)
Frame = -1
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRM +L +HP++YIRPSP+ G LGGVT E + + EAA FDV+ +ETVGVG
Sbjct: 2177535 GSILGDKTRMARLAVHPDAYIRPSPTSGTLGGVTKATRETVVLLEAAGFDVILIETVGVG 2177356
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSR---KLLAQQTIS 118
QSE ++ D +LL +GD+LQGIKKG++E+AD+VVV K DG LA + +S
Sbjct: 2177355 QSEVAVANMVDTFVLLALARTGDQLQGIKKGVLELADIVVVNKADGEHLRDARLAARDLS 2177176
Query: 119 AYTRAVMYTEAKQGFEKPVLAVSAEERTNVPELWEAM 155
+ R ++YT K + V +SA E T + ++WEA+
Sbjct: 2177175 SALR-LIYTHEKI-WRPKVFTISATEGTGLTQMWEAV 2177071
>emb|AL583923.1|MLEPRTN7 Mycobacterium leprae strain TN complete genome; segment 7/10
Length = 348950
Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats.
Identities = 77/157 (49%), Positives = 106/157 (67%), Gaps = 3/157 (1%)
Frame = -1
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRM +L +HP++YIRPSP+ G LGGVT E + + EAA FDV+ +ETVGVG
Sbjct: 178658 GSILGDKTRMARLAVHPDAYIRPSPTSGTLGGVTKATRETVVLLEAAGFDVILIETVGVG 178479
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSR---KLLAQQTIS 118
QSE ++ D +LL +GD+LQGIKKG++E+AD+VVV K DG LA + +S
Sbjct: 178478 QSEVAVANMVDTFVLLALARTGDQLQGIKKGVLELADIVVVNKADGEHLRDARLAARDLS 178299
Query: 119 AYTRAVMYTEAKQGFEKPVLAVSAEERTNVPELWEAM 155
+ R ++YT K + V +SA E T + ++WEA+
Sbjct: 178298 SALR-LIYTHEKI-WRPKVFTISATEGTGLTQMWEAV 178194
>gb|CP000479.1| Mycobacterium avium 104, complete genome
Length = 5475491
Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 74/157 (47%), Positives = 101/157 (64%), Gaps = 1/157 (0%)
Frame = -2
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRM +L HP++YIRPSP+ G LGGV E + + EAA FDV+ +ETVGVG
Sbjct: 3419167 GSILGDKTRMARLANHPDAYIRPSPTSGTLGGVAKATRETVVLLEAAGFDVILIETVGVG 3418988
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSE ++ D +LL GD+LQGIKKG++E+AD+VVV K DG A+ +
Sbjct: 3418987 QSEVTVANMVDTFVLLTLARGGDQLQGIKKGVLELADIVVVNKADGEHLAEARSAARELS 3418808
Query: 122 RAVMYTEAKQG-FEKPVLAVSAEERTNVPELWEAMMK 157
A+ ++ + PVL +SA + T +PELWE + +
Sbjct: 3418807 GAIRLIHPRETLWRPPVLTMSAAQGTGLPELWETIER 3418697
Score = 82.0 bits (201), Expect = 6e-14, Method: Composition-based stats.
Identities = 49/149 (32%), Positives = 79/149 (53%), Gaps = 3/149 (2%)
Frame = +3
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
G++LGD+ RM + IR + GHLGG+ + + + A +DVV +ETVGVG
Sbjct: 815346 GALLGDRIRMAAHINDSDVLIRSVATRGHLGGLAAAVPAAIRLLAAIGYDVVLLETVGVG 815525
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSE + + D ++++ P +GD +Q K G++EVAD+V V K D + + A T
Sbjct: 815526 QSEIEIAAVADPTVVILNPGAGDAVQAAKAGVLEVADIVAVNKADRDGAEQTVRDLRAET 815705
Query: 122 RAVMYT---EAKQGFEKPVLAVSAEERTN 147
A + + +G E + A+ RT+
Sbjct: 815706 SAPIVSLIAARGEGIEDLMAAIEDHRRTD 815792
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome
Length = 3551823
Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 75/166 (45%), Positives = 105/166 (63%), Gaps = 1/166 (0%)
Frame = +2
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRM L +++IRPSP+ G LGGV R E + + EAA +D VFVETVGVG
Sbjct: 2217230 GSILGDKTRMGTLASEEDAFIRPSPTAGTLGGVAPRTREAILLCEAAGYDTVFVETVGVG 2217409
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSE + + D +LL +GDELQGIK+GIVEVAD + +TK DG + A+ + Y
Sbjct: 2217410 QSEISVRSMVDFFLLLALAGAGDELQGIKRGIVEVADAIAITKADGDNRAPAKAARAEYE 2217589
Query: 122 RAV-MYTEAKQGFEKPVLAVSAEERTNVPELWEAMMKMWNTRVESG 166
+A+ + ++ G+E PVL S++ + E+W A+ + E+G
Sbjct: 2217590 KALRLLSDPDSGWEPPVLTCSSQTGAGIDEVWGAVERYRAYTQETG 2217727
Score = 58.9 bits (141), Expect = 5e-07, Method: Composition-based stats.
Identities = 35/105 (33%), Positives = 61/105 (58%), Gaps = 2/105 (1%)
Frame = -2
Query: 2 GSILGDKTRMEKL-GIHPNS-YIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVG 59
G++LGD+ RM + G + + Y+R + T E + + +AA+FD++ VET G
Sbjct: 2098238 GALLGDRIRMNAIYGTNADRVYMRSFATRAANRTTTEALKEAIGVCQAADFDLILVETAG 2098059
Query: 60 VGQSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTK 104
+GQS+T+ DLTD+ + ++ G Q K G++++AD V + K
Sbjct: 2098058 IGQSDTEIVDLTDLTLYVMTHDFGAPTQLEKIGMLDLADFVAINK 2097924
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
Length = 4352825
Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 76/155 (49%), Positives = 101/155 (65%), Gaps = 1/155 (0%)
Frame = -3
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRME+L I N++IRPSP+GG LGGV E + + EAA FDVV VETVG G
Sbjct: 2879364 GSILGDKTRMERLSIDDNAFIRPSPTGGRLGGVNRATRETMIVCEAAGFDVVLVETVGTG 2879185
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSET + D ++L+ P +GDELQGIKKGI+E+ADM+ V K DG A+ ++ Y
Sbjct: 2879184 QSETLVAGMVDFFLVLMLPGAGDELQGIKKGILELADMIAVNKADGPNDTRARLAMNEYK 2879005
Query: 122 RAV-MYTEAKQGFEKPVLAVSAEERTNVPELWEAM 155
A+ + T A + PV+ S + + ELW+ +
Sbjct: 2879004 TALHIMTPAHPDWTPPVVLCSGLKGMGLAELWQKI 2878900
Score = 87.4 bits (215), Expect = 1e-15, Method: Composition-based stats.
Identities = 56/154 (36%), Positives = 84/154 (54%)
Frame = -3
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
G++LGD+TR+ ++R + HLGG+ + + A FDVV +ETVGVG
Sbjct: 3394005 GALLGDRTRLSVDPEDRGVFVRSMAARDHLGGLAGLTVAAMVLMRAL-FDVVLIETVGVG 3393829
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSET+ + D ++ V P SGD LQ +K GI E+ +VVVTK D +R+ A + +
Sbjct: 3393828 QSETEVSRVVDTVVFCVQPGSGDSLQYMKAGIAEIPHLVVVTKADMTRE--AMRARADVE 3393655
Query: 122 RAVMYTEAKQGFEKPVLAVSAEERTNVPELWEAM 155
A+ ++A+ + VL VSA V L A+
Sbjct: 3393654 GALSLSDAEDDWTAQVLMVSARMGDGVDALARAI 3393553
>gb|CP001322.1| Desulfatibacillum alkenivorans AK-01, complete genome
Length = 6517073
Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats.
Identities = 74/166 (44%), Positives = 107/166 (64%), Gaps = 1/166 (0%)
Frame = +3
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRM+ L + N++IRPSPS G LGGVT ++ E + I EAA FDV+ VETVGVG
Sbjct: 308205 GSILGDKTRMQNLSRNKNAFIRPSPSSGVLGGVTRKSRETMLICEAAGFDVILVETVGVG 308384
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSET+ + + D +L++ +GDELQG+KKGI+E+AD +++ K DG K A+ S +
Sbjct: 308385 QSETEVRSMVDFFLLVLIAGAGDELQGMKKGIMELADAILINKADGDNKQRAEMARSEFE 308564
Query: 122 RAVMY-TEAKQGFEKPVLAVSAEERTNVPELWEAMMKMWNTRVESG 166
R + Y A +G+ L S+ +P++W+ + + SG
Sbjct: 308565 RIIHYLLPATEGWTTQALTASSLTGDKIPDVWQTVEDFKANTMASG 308702
Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 55/157 (35%), Positives = 81/157 (51%), Gaps = 2/157 (1%)
Frame = +3
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
G++LGD+ RM P +IR + G LGG+ A +V I +A DV+ +ETVGVG
Sbjct: 2260083 GALLGDRLRMRDAVNLPEIFIRSMATRGALGGLCQGARDVSRILDAFGKDVILIETVGVG 2260262
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
Q E + D+++++ P GD +Q +K GI+E+AD+ VV K D I
Sbjct: 2260263 QDEVEVVKTADIVMVVCVPGQGDGIQALKAGIMEIADLYVVNKADKEGADEVAADIGG-- 2260436
Query: 122 RAVMYTEAKQGFE--KPVLAVSAEERTNVPELWEAMM 156
M A +G E P+L SA V EL +A++
Sbjct: 2260437 ---MLDIASEGREPRPPILKTSAIHNLGVTELVDALV 2260538
Score = 77.8 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 38/105 (36%), Positives = 61/105 (58%)
Frame = -2
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
G++LGD+ RM + +IR + +GG+ A L +++A +FDV+ +ET+GVG
Sbjct: 5225779 GAVLGDRIRMFEHSNDDKVFIRSLSTQDSMGGICEAAKHALNLYKAFDFDVILLETIGVG 5225600
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKND 106
Q E D+ +++ P GD +Q K GI+E+AD+ VV K D
Sbjct: 5225599 QDEVDVSIYADITLVVFAPGFGDIMQACKAGIMEIADIFVVNKAD 5225465
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 31/103 (30%), Positives = 54/103 (52%)
Frame = +1
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
G++LGD+ RM + +P Y+R + ++ +++ + A +D+V ET G+G
Sbjct: 3556453 GALLGDRIRMNAID-NPRVYMRSLATRESHTELSDAVEDIIRFLKGAGYDLVIAETAGIG 3556629
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTK 104
Q +T DL D+ I + G Q K +++ AD+VVV K
Sbjct: 3556630 QGDTAIVDLVDVAIFAMTGEFGAASQLEKIDMLDFADLVVVNK 3556758
>gb|CP001099.1| Chlorobaculum parvum NCIB 8327, complete genome
Length = 2289249
Score = 142 bits (357), Expect = 5e-32, Method: Composition-based stats.
Identities = 73/157 (46%), Positives = 105/157 (66%), Gaps = 1/157 (0%)
Frame = -2
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDK+RME+L P ++IRPS S G LGG R E + + EAA +DV+ VETVGVG
Sbjct: 896735 GSILGDKSRMEQLAARPEAFIRPSASSGFLGGTAPRTHEAILLCEAAGYDVIIVETVGVG 896556
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSE + D ++LL+ P SGD+LQGIK+GI+E+AD+V V K D R+ +A+ + + +
Sbjct: 896555 QSEIVVNSMVDFILLLMLPGSGDDLQGIKRGIMEIADLVAVNKADSGRQAIAEISKADFE 896376
Query: 122 RAV-MYTEAKQGFEKPVLAVSAEERTNVPELWEAMMK 157
A+ + E G+E+ VL SA E + V E+W+ + +
Sbjct: 896375 AALRLLPEKHTGWERNVLLTSALEGSGVSEVWQIVRR 896265
>gb|CP000482.1| Pelobacter propionicus DSM 2379, complete genome
Length = 4008000
Score = 142 bits (357), Expect = 5e-32, Method: Composition-based stats.
Identities = 76/166 (45%), Positives = 105/166 (63%), Gaps = 1/166 (0%)
Frame = -2
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRME L H N++IRPSPSGG LGGV ++ E + + EAA FDV+ VETVGVG
Sbjct: 1345343 GSILGDKTRMESLSRHSNAFIRPSPSGGVLGGVARKSRETMLLCEAAGFDVILVETVGVG 1345164
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSE + + D +L+ +GD+LQGIKKGI+E+ D++VV K DG+ + A T + Y
Sbjct: 1345163 QSEVTVRSMVDFFMLVTITGAGDDLQGIKKGIMELTDLIVVNKADGANLIRANATRADYE 1344984
Query: 122 RAVMYTE-AKQGFEKPVLAVSAEERTNVPELWEAMMKMWNTRVESG 166
+ + Y + A +G+ SA + ELW+ + + ESG
Sbjct: 1344983 QVLHYLQPATEGWLTGARTCSATTGNGIDELWQVVEQFKRVTRESG 1344846
Score = 77.8 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 50/143 (34%), Positives = 72/143 (50%), Gaps = 12/143 (8%)
Frame = -2
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
G++LGD+ RM +IR + G LGGV+ +V+ + +A DV+ +ETVGVG
Sbjct: 1343687 GAVLGDRVRMRDHFTDEGVFIRSLATRGALGGVSRSTADVVMVLDALGKDVIIIETVGVG 1343508
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKND------GSR------ 109
Q E + ++ P GD +Q IK GI+E+AD+ VV K D +R
Sbjct: 1343507 QDEVDIARIAHTTCVVTVPGLGDGIQSIKAGILEIADIFVVNKADRPGADEAARDLNTML 1343328
Query: 110 KLLAQQTISAYTRAVMYTEAKQG 132
L A T AV+ TEA +G
Sbjct: 1343327 DLRAPSTGEGRRPAVLKTEASRG 1343259
Score = 75.1 bits (183), Expect = 6e-12, Method: Composition-based stats.
Identities = 39/105 (37%), Positives = 58/105 (55%)
Frame = +2
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
G+ILGD+ RM + +IR + G LGG++ +V + + DVV +ETVGVG
Sbjct: 400970 GAILGDRIRMSRHAADEGVFIRSLATRGALGGLSRSTSDVALVLDGLGMDVVIIETVGVG 401149
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKND 106
Q E +++ P GD++Q IK GI+E+ D+ VV K D
Sbjct: 401150 QDEVDIVKAAHTTCVVMVPGLGDDIQAIKAGILEIGDVFVVNKAD 401284
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
Length = 4892717
Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats.
Identities = 76/166 (45%), Positives = 103/166 (62%), Gaps = 1/166 (0%)
Frame = -2
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRM +L P+++IRPSPS G LGGV ++ E + + EAA FDVV VETVG+G
Sbjct: 2161093 GSILGDKTRMARLSAEPHAFIRPSPSSGTLGGVAAKTREAMLLCEAAGFDVVLVETVGIG 2160914
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSET D+TD + L+ P +GDELQGIKKG+VE+ADM+ + K DG A Y
Sbjct: 2160913 QSETAVCDMTDFFLALMLPGAGDELQGIKKGLVELADMIAINKADGDNIARANLAAGEYR 2160734
Query: 122 RAV-MYTEAKQGFEKPVLAVSAEERTNVPELWEAMMKMWNTRVESG 166
A+ + T ++ PV+ SA + LW++++ N G
Sbjct: 2160733 AALHILTPRSPHWQPPVVTYSAVTGNGIAGLWQSILDHRNATQAPG 2160596
>gb|CP001349.1| Methylobacterium nodulans ORS 2060, complete genome
Length = 7772460
Score = 141 bits (355), Expect = 8e-32, Method: Composition-based stats.
Identities = 78/157 (49%), Positives = 102/157 (64%), Gaps = 2/157 (1%)
Frame = +2
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRM +L PN+YIRPSPS G LGGV ++ E + + EAA FDV+ VETVGVG
Sbjct: 1155836 GSILGDKTRMARLAADPNAYIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVG 1156015
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSET DLTD ++L+ P +GDELQGIKKGI+E+ADM+ V K DG + +A
Sbjct: 1156016 QSETAVADLTDFFLVLMLPGAGDELQGIKKGILELADMIAVNKADGEEGSRRAKAAAAEY 1156195
Query: 122 RAVMY--TEAKQGFEKPVLAVSAEERTNVPELWEAMM 156
RA ++ T A + PV+ +S + LW ++
Sbjct: 1156196 RAALHILTPASATWTPPVVTISGLANLGLDALWATIL 1156306
>emb|CT573213.2| Frankia alni str. ACN14A chromosome, complete sequence
Length = 7497934
Score = 141 bits (355), Expect = 8e-32, Method: Composition-based stats.
Identities = 76/168 (45%), Positives = 103/168 (61%), Gaps = 3/168 (1%)
Frame = -3
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRM L + P ++IRPSP+ G LGGV E + + EAA +DVV VETVGVG
Sbjct: 5364992 GSILGDKTRMAALSVDPAAFIRPSPTAGTLGGVAKATREAMVVMEAAGYDVVMVETVGVG 5364813
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSET D+ D + L +GD+LQGIKKG++E+AD++ V K DG +L A++
Sbjct: 5364812 QSETTVADMVDTFLFLTLARTGDQLQGIKKGVLELADVIAVNKADGPHELDARRAARELA 5364633
Query: 122 RAVMYTEAKQG---FEKPVLAVSAEERTNVPELWEAMMKMWNTRVESG 166
A+ + G + PVL SA ERT + +W ++K +T SG
Sbjct: 5364632 GALRMLQGSSGPRDWNTPVLTCSAAERTGLDTVWAQVVKHQDTLDASG 5364489
Score = 94.7 bits (234), Expect = 8e-18, Method: Composition-based stats.
Identities = 52/130 (40%), Positives = 77/130 (59%)
Frame = -1
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
G++LGD+ RM + P +IR S G LGG+ + + L + +AA FDV+ VETVGVG
Sbjct: 6413323 GALLGDRVRMSEHAGDPGVFIRSLASRGRLGGLAAATAQALRVLDAAGFDVILVETVGVG 6413144
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
Q+E L D +L+ P +GD++Q +K G++EVAD++VV K D ++A T
Sbjct: 6413143 QAEIDIAALADTTCVLLAPDAGDDVQAVKAGLLEVADVLVVNKADRPGAARTAADLTAMT 6412964
Query: 122 RAVMYTEAKQ 131
R M A+Q
Sbjct: 6412963 R--MRVGARQ 6412940
Score = 40.8 bits (94), Expect = 0.17, Method: Composition-based stats.
Identities = 33/123 (26%), Positives = 58/123 (47%), Gaps = 7/123 (5%)
Frame = -1
Query: 2 GSILGDKTRMEKLGIHPNS--YIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVG 59
G++LGD+ RM LG + R + V + +AA +D+V VET G
Sbjct: 6356185 GALLGDRIRMNALGESDAGEVFFRSLATRAAGSEVPPSVPGAIAACKAAGYDLVIVETPG 6356006
Query: 60 VGQSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTK-----NDGSRKLLAQ 114
+GQ + D+ + ++ P G Q K +++ AD+V V K + +R+ +A+
Sbjct: 6356005 IGQGDAAIVPHCDVSLYVMTPEYGAASQLEKIDMLDFADVVAVNKFERRGAEDARRDVAR 6355826
Query: 115 QTI 117
Q +
Sbjct: 6355825 QLV 6355817
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
Length = 4829781
Score = 140 bits (354), Expect = 9e-32, Method: Composition-based stats.
Identities = 73/157 (46%), Positives = 100/157 (63%), Gaps = 1/157 (0%)
Frame = +3
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRM +L HP++YIRPSP+ G LGGV E + + EA FDV+ +ETVGVG
Sbjct: 1288062 GSILGDKTRMARLANHPDAYIRPSPTSGTLGGVAKATRETVVLLEATGFDVILIETVGVG 1288241
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSE ++ D +LL GD+LQGIKKG++E+AD+VVV K DG A+ +
Sbjct: 1288242 QSEVTVANMVDTFVLLTLARGGDQLQGIKKGVLELADIVVVNKADGEHLAEARSAARELS 1288421
Query: 122 RAVMYTEAKQG-FEKPVLAVSAEERTNVPELWEAMMK 157
A+ ++ + PVL +SA + T +PELWE + +
Sbjct: 1288422 GAIRLIHPRETLWRPPVLTMSAAQGTGLPELWETIER 1288532
Score = 81.3 bits (199), Expect = 9e-14, Method: Composition-based stats.
Identities = 41/105 (39%), Positives = 63/105 (60%)
Frame = +2
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
G++LGD+ RM + IR + GHLGG+ + + + A +DVV +ETVGVG
Sbjct: 707771 GALLGDRIRMAAHINDSDVLIRSVATRGHLGGLAAAVPAAIRLLAAIGYDVVLLETVGVG 707950
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKND 106
QSE + + D ++++ P +GD +Q K G++EVAD+V V K D
Sbjct: 707951 QSEIEIAAVADPTVVILNPGAGDAVQAAKAGVLEVADIVAVNKAD 708085
>gb|CP000908.1| Methylobacterium extorquens PA1, complete genome
Length = 5471154
Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats.
Identities = 77/153 (50%), Positives = 100/153 (65%), Gaps = 2/153 (1%)
Frame = -1
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRM +L I N++IRPSPS G LGGV ++ E + + EAA FDV+ VETVGVG
Sbjct: 334473 GSILGDKTRMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVG 334294
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTK-NDGSRKLLAQQTISAY 120
QSET DLTD ++L+ P +GDELQGIKKGI+E+ADM+ V K +DG + A S Y
Sbjct: 334293 QSETAVADLTDFFLVLMLPGAGDELQGIKKGILELADMIAVNKADDGDGERRASAAASEY 334114
Query: 121 TRAV-MYTEAKQGFEKPVLAVSAEERTNVPELW 152
A+ + T + PV+ +S + LW
Sbjct: 334113 RAALHILTPPSATWTPPVVTISGLHGKGLDSLW 334015
>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome
Length = 3402093
Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats.
Identities = 77/157 (49%), Positives = 100/157 (63%), Gaps = 1/157 (0%)
Frame = +3
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRM +L +YIRPSP+ G LGGV +R E + + EAA FDV+ VETVG G
Sbjct: 2436288 GSILGDKTRMARLAAAEAAYIRPSPAAGTLGGVAARTREAMLLCEAAGFDVILVETVGTG 2436467
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSET D+TD + L+ P +GDELQGIKKG+VE+ADM+ V K DG A +AY
Sbjct: 2436468 QSETAVYDMTDFFLALMLPGAGDELQGIKKGLVELADMIAVNKADGDNLSRANTAAAAYR 2436647
Query: 122 RAV-MYTEAKQGFEKPVLAVSAEERTNVPELWEAMMK 157
A+ + Q + PVL S + +PELW +++
Sbjct: 2436648 SAMKILVPRSQHWSPPVLTYSGLTGSGIPELWRKIVE 2436758
>emb|CU458896.1| Mycobacterium abscessus chromosome, complete sequence
Length = 5067172
Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats.
Identities = 73/166 (43%), Positives = 104/166 (62%), Gaps = 1/166 (0%)
Frame = -3
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRM +L +HP++YIRPSP+ G LGGV E + + EAA FDV+ +ETVGVG
Sbjct: 2757071 GSILGDKTRMGRLSVHPDAYIRPSPTSGTLGGVAKATRETVVLLEAAGFDVILIETVGVG 2756892
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSE ++ D + L +GD+LQGIKKG++E+AD+VVV K DG + A++ +
Sbjct: 2756891 QSEVAVANMVDTFVFLTLARTGDQLQGIKKGVLELADIVVVNKADGEHAIEAKKAARELS 2756712
Query: 122 RAVMYTEAKQG-FEKPVLAVSAEERTNVPELWEAMMKMWNTRVESG 166
A+ + PVL +SA E V E+W+ +++ E+G
Sbjct: 2756711 GALRLIYPHDTLWRPPVLTMSALENNGVSEMWDTVLQHRAVLTEAG 2756574
>gb|CP000607.1| Chlorobium phaeovibrioides DSM 265, complete genome
Length = 1966858
Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats.
Identities = 72/156 (46%), Positives = 104/156 (66%), Gaps = 1/156 (0%)
Frame = +1
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDK RMEKL P ++IRP+PS HLGG R E + + AA +DV+ VETVGVG
Sbjct: 1171522 GSILGDKARMEKLSTRPEAFIRPTPSSCHLGGSGPRTHETIMLTRAAGYDVILVETVGVG 1171701
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSE Q +++TD ++LL+ P SGDELQGIK+GI+E+AD++ ++K DG ++ +A + +
Sbjct: 1171702 QSEVQIENMTDCILLLMLPGSGDELQGIKRGIMEIADIICISKTDGRQEQIASLAQADFE 1171881
Query: 122 RAV-MYTEAKQGFEKPVLAVSAEERTNVPELWEAMM 156
A+ M +G ++ VL SA + E WE ++
Sbjct: 1171882 AALGMLPPKHEGRQRKVLLTSALNGKGITESWEEII 1171989
>gb|CP000511.1| Mycobacterium vanbaalenii PYR-1, complete genome
Length = 6491865
Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 76/166 (45%), Positives = 103/166 (62%), Gaps = 1/166 (0%)
Frame = +2
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRM KL +HP++YIRPSP+ G LGGV E + + EAA +DVV VETVGVG
Sbjct: 2928548 GSILGDKTRMAKLAVHPDAYIRPSPTSGTLGGVAKATRETIVLLEAAGYDVVLVETVGVG 2928727
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSE ++ D + L +GD+LQGIKKG++E+AD+VVV K DG + A+
Sbjct: 2928728 QSEVTVANMVDTFVFLTLARTGDQLQGIKKGVLELADIVVVNKADGEHAVEAKAAARELA 2928907
Query: 122 RAVMYTEAKQG-FEKPVLAVSAEERTNVPELWEAMMKMWNTRVESG 166
A+ ++ + PVL +SA + ELWE ++K E+G
Sbjct: 2928908 GAIRLIYPRETLWRPPVLTMSALTGDGLAELWETVLKHREVLTEAG 2929045
Score = 82.0 bits (201), Expect = 5e-14, Method: Composition-based stats.
Identities = 50/154 (32%), Positives = 82/154 (53%)
Frame = -3
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
G++LGD+ RM P+ IR + GHLGG+ + + + A +D+V +ETVGVG
Sbjct: 4560235 GALLGDRIRMAAHINDPDVLIRSVATRGHLGGLAAAVPAAIRLLSALGYDLVILETVGVG 4560056
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSE + + D ++++ P +GD +Q K G++EVAD+V V K D A QT+
Sbjct: 4560055 QSEIEIAAVADPTVVILNPGAGDAVQAAKAGLLEVADVVAVNKADRDG---ADQTVR--- 4559894
Query: 122 RAVMYTEAKQGFEKPVLAVSAEERTNVPELWEAM 155
+ + + P+L + A + + EL E +
Sbjct: 4559893 ------DLRAETDVPILKLVAAQGDGIAELKEVI 4559810
>gb|CP000922.1| Anoxybacillus flavithermus WK1, complete genome
Length = 2846746
Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 71/166 (42%), Positives = 103/166 (62%), Gaps = 1/166 (0%)
Frame = +1
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRME L HP ++IRPSPSGG LGGV + E + + EAA +D++ VETVGVG
Sbjct: 979318 GSILGDKTRMEYLARHPRAFIRPSPSGGTLGGVHRKTRETMLLCEAAGYDIILVETVGVG 979497
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSE + + D +LL +GDELQG+KKG++E+ D +V+ K DG K A+ Y
Sbjct: 979498 QSEVAVRGMVDFFLLLALTGAGDELQGMKKGMMELVDAIVINKADGDNKQKAELAKEEYN 979677
Query: 122 RAVMY-TEAKQGFEKPVLAVSAEERTNVPELWEAMMKMWNTRVESG 166
+ + Y A +G+E S+ + + ++W+ + + T +SG
Sbjct: 979678 QILHYLRHATKGWETKAYTCSSLYKEGIEQIWDVIERFVRTTKQSG 979815
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 31/103 (30%), Positives = 57/103 (55%)
Frame = -3
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
G++LGD+ RM + P Y+R + ++ + +E+ +AA FD+V VET G+G
Sbjct: 2722490 GALLGDRIRMNAIS-SPRVYMRSLATRSSRSELSLAIQDAIEVVKAAGFDLVIVETSGIG 2722314
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTK 104
Q + KD+ D+ + ++ G Q K +++ AD++V+ K
Sbjct: 2722313 QGDAAIKDICDIAMYVMTSEFGAPSQLEKIDMIDYADLIVINK 2722185
>gb|CP000139.1| Bacteroides vulgatus ATCC 8482, complete genome
Length = 5163189
Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 73/155 (47%), Positives = 99/155 (63%), Gaps = 1/155 (0%)
Frame = +2
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRMEKL +HP S+IRPSPS G LGGV + E + + EAA FD +FVETVGVG
Sbjct: 2516339 GSILGDKTRMEKLSVHPKSFIRPSPSAGSLGGVARKTRETIILCEAAGFDKIFVETVGVG 2516518
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSET + D +L+ +GDELQGIK+GI+E+AD +V+ K DGS A+ S +
Sbjct: 2516519 QSETAVHSMVDFFLLIQLAGTGDELQGIKRGIMEMADGIVINKADGSNIEKAKLAASHFR 2516698
Query: 122 RAV-MYTEAKQGFEKPVLAVSAEERTNVPELWEAM 155
A+ ++ G+ V+ S + E+W+ +
Sbjct: 2516699 NALHLFPAPDSGWSPKVMTYSGFYGIGIKEIWDMI 2516803
>gb|CP001097.1| Chlorobium limicola DSM 245, complete genome
Length = 2763181
Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 71/155 (45%), Positives = 101/155 (65%), Gaps = 1/155 (0%)
Frame = -3
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDK RMEKL ++IRP+PS GHLGG + + E + + E+A FDV+ VETVGVG
Sbjct: 947912 GSILGDKARMEKLAARSEAFIRPTPSSGHLGGTSPKTHEAIVLCESAGFDVILVETVGVG 947733
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSE + D ++LL+ P SGDELQGIK+GI+E+AD + +TK DG++ LA + + +
Sbjct: 947732 QSEIMIDSMVDFILLLMLPGSGDELQGIKRGIMEIADAIAITKADGNQGALANVSKADFA 947553
Query: 122 RAVMYTEAKQGF-EKPVLAVSAEERTNVPELWEAM 155
A+ K F E+ V SA T + ++W+ +
Sbjct: 947552 AALHMLPPKHPFHERKVFLTSAITGTGITDVWQEI 947448
>gb|CP000096.1| Pelodictyon luteolum DSM 273, complete genome
Length = 2364842
Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats.
Identities = 78/166 (46%), Positives = 104/166 (62%), Gaps = 1/166 (0%)
Frame = +3
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDK RMEKL ++IRP+ S GHLGG + E + + EAA ++V+ +ETVGVG
Sbjct: 1463910 GSILGDKARMEKLTARKEAFIRPTASSGHLGGGAPKTHETMLLLEAAGYEVIILETVGVG 1464089
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSE +TD ++LL+ P SGDELQGIK+GI+E+AD V VTK DG R LA+ T S +T
Sbjct: 1464090 QSEVHADAMTDFVLLLMLPGSGDELQGIKRGIMEIADAVGVTKADGERVELAKATASDFT 1464269
Query: 122 RAV-MYTEAKQGFEKPVLAVSAEERTNVPELWEAMMKMWNTRVESG 166
A+ M E G + VL SA + E W + ++ +SG
Sbjct: 1464270 AALGMLPEKHPGHRRKVLLTSARSGAGIKETWGEITGFFDLLQKSG 1464407
>ref|XM_002153927.1| PREDICTED: Hydra magnipapillata similar to methylmalonic aciduria
type A (LOC100209600), mRNA
Length = 1048
Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats.
Identities = 75/164 (45%), Positives = 103/164 (62%), Gaps = 1/164 (0%)
Frame = +1
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GS+LGD+TRM L PN+YIRPSP+ G LGGV + E + + EAA +D++ VETVG+G
Sbjct: 337 GSLLGDRTRMITLSHDPNAYIRPSPTAGTLGGVARKTNEAIILCEAAGYDIILVETVGIG 516
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSE D+ DM +L++PPASGDELQGIKKGIVE+ D+V+V K DG A++ S YT
Sbjct: 517 QSEVAVGDMVDMFVLVIPPASGDELQGIKKGIVEMVDLVLVNKADGDLLPAARRIQSEYT 696
Query: 122 RAVMYTEAKQGFEKP-VLAVSAEERTNVPELWEAMMKMWNTRVE 164
A+ + P V +VS+ +W M + N ++
Sbjct: 697 SALKLLSRQSDIWHPKVHSVSSLLDEGFGIVWAEMTEFKNIMLQ 828
>gb|CP000656.1| Mycobacterium gilvum PYR-GCK, complete genome
Length = 5619607
Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats.
Identities = 75/166 (45%), Positives = 104/166 (62%), Gaps = 1/166 (0%)
Frame = -2
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRM KL +HP++YIRPSP+ G LGGV E + + EAA +DVV VETVGVG
Sbjct: 3896337 GSILGDKTRMAKLAVHPDAYIRPSPTSGTLGGVAKATRETIVLLEAAGYDVVLVETVGVG 3896158
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSE ++ D + L +GD+LQGIKKG++E+AD++VV K DG + A+ +
Sbjct: 3896157 QSEVTVANMVDTFVFLTLARTGDQLQGIKKGVLELADVIVVNKADGEHAVEAKAAARELS 3895978
Query: 122 RAVMYTEAKQG-FEKPVLAVSAEERTNVPELWEAMMKMWNTRVESG 166
A+ ++ + PVL +SA + ELWE ++K E+G
Sbjct: 3895977 GAIRLIYPRETLWRPPVLTMSALTGAGLSELWETVLKHRKVLTEAG 3895840
Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 53/152 (34%), Positives = 84/152 (55%), Gaps = 3/152 (1%)
Frame = +1
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
G++LGD+ RM P+ IR + GHLGG+ + + + A +D+V +ETVGVG
Sbjct: 2495542 GALLGDRIRMAAHINDPDVLIRSVAARGHLGGLAAAVPAAITLLSALGYDLVILETVGVG 2495721
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSE + + D ++++ P +GD +Q K G++EVAD+VVV K D + + A T
Sbjct: 2495722 QSEIEIAAVADPTVVILNPGAGDAVQAAKAGLLEVADIVVVNKADRDGADQTVRDLRAET 2495901
Query: 122 RA-VMYTEAKQ--GFEKPVLAVSAEERTNVPE 150
++ A Q G ++ V A+ A R + PE
Sbjct: 2495902 DVPILKLVAAQGAGLDEVVAAIDAHHRADSPE 2495997
>gb|CP001029.1| Methylobacterium populi BJ001, complete genome
Length = 5800441
Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats.
Identities = 77/153 (50%), Positives = 100/153 (65%), Gaps = 2/153 (1%)
Frame = -1
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRM +L I N++IRPSPS G LGGV ++ E + + EAA FDV+ VETVGVG
Sbjct: 397207 GSILGDKTRMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVG 397028
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTK-NDGSRKLLAQQTISAY 120
QSET DLTD ++L+ P +GDELQGIKKGI+E+ADM+ V K +DG + A S Y
Sbjct: 397027 QSETAVADLTDFFLVLMLPGAGDELQGIKKGILELADMIAVNKADDGEGERRANAAASEY 396848
Query: 121 TRAV-MYTEAKQGFEKPVLAVSAEERTNVPELW 152
A+ + T + PV+ +S + LW
Sbjct: 396847 RAALHILTPPSATWTPPVVTISGLHGKGLDALW 396749
>gb|CP001298.1| Methylobacterium chloromethanicum CM4, complete genome
Length = 5777908
Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats.
Identities = 77/153 (50%), Positives = 100/153 (65%), Gaps = 2/153 (1%)
Frame = -2
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRM +L I N++IRPSPS G LGGV ++ E + + EAA FDV+ VETVGVG
Sbjct: 323310 GSILGDKTRMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVG 323131
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTK-NDGSRKLLAQQTISAY 120
QSET DLTD ++L+ P +GDELQGIKKGI+E+ADM+ V K +DG + A S Y
Sbjct: 323130 QSETAVADLTDFFLVLMLPGAGDELQGIKKGILELADMIAVNKADDGDGERRASAAASEY 322951
Query: 121 TRAV-MYTEAKQGFEKPVLAVSAEERTNVPELW 152
A+ + T + PV+ +S + LW
Sbjct: 322950 RAALHILTPPSATWTPPVVTISGLHGKGLDSLW 322852
>gb|CP000854.1| Mycobacterium marinum M, complete genome
Length = 6636827
Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats.
Identities = 79/168 (47%), Positives = 107/168 (63%), Gaps = 3/168 (1%)
Frame = +1
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRM +L +HP++Y+RPSP+ G LGGV E + + EAA FDVV +ETVGVG
Sbjct: 2771296 GSILGDKTRMARLAMHPDAYVRPSPTSGTLGGVAKATRESVVLLEAAGFDVVLIETVGVG 2771475
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSR---KLLAQQTIS 118
QSE ++ D +LL +GD+LQGIKKG++E+AD+VVV K DG LA + +S
Sbjct: 2771476 QSEVAVANMVDTFVLLTLARTGDQLQGIKKGVLELADIVVVNKADGEHLRDARLAARELS 2771655
Query: 119 AYTRAVMYTEAKQGFEKPVLAVSAEERTNVPELWEAMMKMWNTRVESG 166
R + E + PVL +SA E T + +LWEA+ + E+G
Sbjct: 2771656 GAIRLIYPRETI--WWPPVLTMSAVEGTGLTQLWEAVERHRQVLTEAG 2771793
Score = 81.3 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 45/116 (38%), Positives = 69/116 (59%)
Frame = -1
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
G++LGD+ RM IR S GHLGG+ + + + A +DVV +ETVGVG
Sbjct: 5842214 GALLGDRIRMTAHVNDSEVLIRSVASRGHLGGLAASVPAAIRLLGALRYDVVLLETVGVG 5842035
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTI 117
QSE + + D ++++ P +GD +Q K G++EVAD+V V K D ++ A+QT+
Sbjct: 5842034 QSEIEVAAVADPTVVVLNPGTGDAVQAAKAGLLEVADIVAVNKAD---RVGAEQTV 5841876
>gb|CP000518.1| Mycobacterium sp. KMS, complete genome
Length = 5737227
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 74/166 (44%), Positives = 105/166 (63%), Gaps = 1/166 (0%)
Frame = -3
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRM KL +HP++YIRPSP+ G LGGV E + + EAA +DV+ VETVGVG
Sbjct: 3341362 GSILGDKTRMAKLAVHPDAYIRPSPTSGTLGGVAKATRETIVLLEAAGYDVILVETVGVG 3341183
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSE ++ D + L +GD+LQGIKKG++E+AD+VVV K DG + A+ T
Sbjct: 3341182 QSEVTVSNMVDTFVFLTLARTGDQLQGIKKGVLELADIVVVNKADGEHAIEAKSAARELT 3341003
Query: 122 RAVMYTEAKQG-FEKPVLAVSAEERTNVPELWEAMMKMWNTRVESG 166
A+ ++ + PVL +SA + ELW+ +++ + E+G
Sbjct: 3341002 AALRLIYPRETLWRPPVLTMSALHGDGLRELWDKVLEHRDVLREAG 3340865
Score = 81.6 bits (200), Expect = 7e-14, Method: Composition-based stats.
Identities = 52/150 (34%), Positives = 81/150 (54%)
Frame = -1
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
G++LGD+ RM P+ IR + GHLGG+ + + + A FD++ +ETVGVG
Sbjct: 4083693 GALLGDRIRMAAHINDPDVLIRSVATRGHLGGLAAAVPAAIRLLAALAFDLIILETVGVG 4083514
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSE + + D ++++ P +GD +Q K G++EVAD+VVV K D A QT+
Sbjct: 4083513 QSEIEIAAIADPTVVVLNPGAGDAVQAAKAGLLEVADIVVVNKADRDG---ADQTVR--- 4083352
Query: 122 RAVMYTEAKQGFEKPVLAVSAEERTNVPEL 151
+ + P+L + A + VPEL
Sbjct: 4083351 ------DLRGEVSVPILKLVAAQGEGVPEL 4083280
>gb|CP000384.1| Mycobacterium sp. MCS, complete genome
Length = 5705448
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 74/166 (44%), Positives = 105/166 (63%), Gaps = 1/166 (0%)
Frame = -1
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRM KL +HP++YIRPSP+ G LGGV E + + EAA +DV+ VETVGVG
Sbjct: 3313080 GSILGDKTRMAKLAVHPDAYIRPSPTSGTLGGVAKATRETIVLLEAAGYDVILVETVGVG 3312901
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSE ++ D + L +GD+LQGIKKG++E+AD+VVV K DG + A+ T
Sbjct: 3312900 QSEVTVSNMVDTFVFLTLARTGDQLQGIKKGVLELADIVVVNKADGEHAIEAKSAARELT 3312721
Query: 122 RAVMYTEAKQG-FEKPVLAVSAEERTNVPELWEAMMKMWNTRVESG 166
A+ ++ + PVL +SA + ELW+ +++ + E+G
Sbjct: 3312720 AALRLIYPRETLWRPPVLTMSALHGDGLRELWDKVLEHRDVLREAG 3312583
Score = 81.6 bits (200), Expect = 7e-14, Method: Composition-based stats.
Identities = 52/150 (34%), Positives = 81/150 (54%)
Frame = -1
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
G++LGD+ RM P+ IR + GHLGG+ + + + A FD++ +ETVGVG
Sbjct: 4049211 GALLGDRIRMAAHINDPDVLIRSVATRGHLGGLAAAVPAAIRLLAALAFDLIILETVGVG 4049032
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSE + + D ++++ P +GD +Q K G++EVAD+VVV K D A QT+
Sbjct: 4049031 QSEIEIAAIADPTVVVLNPGAGDAVQAAKAGLLEVADIVVVNKADRDG---ADQTVR--- 4048870
Query: 122 RAVMYTEAKQGFEKPVLAVSAEERTNVPEL 151
+ + P+L + A + VPEL
Sbjct: 4048869 ------DLRGEVSVPILKLVAAQGEGVPEL 4048798
>gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete genome
Length = 6260361
Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats.
Identities = 73/153 (47%), Positives = 98/153 (64%), Gaps = 1/153 (0%)
Frame = +2
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRME+L +HP S+IRPSPS G LGGV + E + + EAA FD +FVETVGVG
Sbjct: 5273231 GSILGDKTRMEQLSVHPQSFIRPSPSAGSLGGVARKTRETIVLCEAAGFDKIFVETVGVG 5273410
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSET + D +L+ +GDELQGIK+GI+E+AD +V+ K DG A+ S +
Sbjct: 5273411 QSETAVHSMVDFFLLIQLAGTGDELQGIKRGIMEMADGIVINKADGDNLEPAKLAASQFR 5273590
Query: 122 RAV-MYTEAKQGFEKPVLAVSAEERTNVPELWE 153
A+ ++ + G+ VL S V E+W+
Sbjct: 5273591 NALHLFPAPESGWIPKVLTYSGFYNIGVKEIWD 5273689
>gb|CP000580.1| Mycobacterium sp. JLS, complete genome
Length = 6048425
Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats.
Identities = 74/166 (44%), Positives = 105/166 (63%), Gaps = 1/166 (0%)
Frame = -3
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRM KL +HP++YIRPSP+ G LGGV E + + EAA +DV+ VETVGVG
Sbjct: 3286989 GSILGDKTRMAKLAVHPDAYIRPSPTSGTLGGVAKATRETIVLLEAAGYDVILVETVGVG 3286810
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSE ++ D + L +GD+LQGIKKG++E+AD+VVV K DG + A+ T
Sbjct: 3286809 QSEVTVSNMVDTFVFLTLARTGDQLQGIKKGVLELADIVVVNKADGEHAIEAKSAARELT 3286630
Query: 122 RAVMYTEAKQG-FEKPVLAVSAEERTNVPELWEAMMKMWNTRVESG 166
A+ ++ + PVL +SA + ELW+ +++ + E+G
Sbjct: 3286629 AALRLIYPRETLWRPPVLTMSALHGDGLRELWDKVLEHRDVLHEAG 3286492
Score = 81.6 bits (200), Expect = 7e-14, Method: Composition-based stats.
Identities = 52/150 (34%), Positives = 81/150 (54%)
Frame = -3
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
G++LGD+ RM P+ IR + GHLGG+ + + + A FD++ +ETVGVG
Sbjct: 4020765 GALLGDRIRMAAHINDPDVLIRSVATRGHLGGLAAAVPAAIRLLAALAFDLIILETVGVG 4020586
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSE + + D ++++ P +GD +Q K G++EVAD+VVV K D A QT+
Sbjct: 4020585 QSEIEIAAIADPTVVVLNPGAGDAVQAAKAGLLEVADIVVVNKADRDG---ADQTVR--- 4020424
Query: 122 RAVMYTEAKQGFEKPVLAVSAEERTNVPEL 151
+ + P+L + A + VPEL
Sbjct: 4020423 ------DLRGEVSVPILKLVAAQGEGVPEL 4020352
>gb|CP000108.1| Chlorobium chlorochromatii CaD3, complete genome
Length = 2572079
Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats.
Identities = 72/159 (45%), Positives = 102/159 (64%), Gaps = 1/159 (0%)
Frame = -2
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDK RMEKL ++IRP+PS GHLGG + R E L + EAA +DV+ VETVGVG
Sbjct: 1644505 GSILGDKARMEKLSGRKEAFIRPTPSSGHLGGTSPRTHEALLLCEAAGYDVIIVETVGVG 1644326
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSE + + D ++LL+ P SGDELQGIK+GI+E+ADM+ +TK DG + A + + +
Sbjct: 1644325 QSELHIEQMVDFVLLLMLPGSGDELQGIKRGIMEIADMIAITKCDGLQATSAAISHAEFE 1644146
Query: 122 RAVMYTEAKQGFEKP-VLAVSAEERTNVPELWEAMMKMW 159
A+ + F +P V SA + E+W+ + + +
Sbjct: 1644145 AALRMVPKRHPFWQPSVQLTSAVTGVGIAEVWQQIERFF 1644029
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome
Length = 4296230
Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats.
Identities = 74/165 (44%), Positives = 102/165 (61%)
Frame = +1
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRME L +YIRPSPS G LGGV +R E + + EAA FDV+ VETVGVG
Sbjct: 2202748 GSILGDKTRMEMLSQRTEAYIRPSPSAGSLGGVAARTRETMLVCEAAGFDVIIVETVGVG 2202927
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSET +TD+ LL P +GD+LQ IKKGI+E+AD++V+ K D + +
Sbjct: 2202928 QSETAVAGMTDIFCLLQLPNAGDDLQAIKKGIMEIADLIVINKADIDARAAQLAKSQMKS 2203107
Query: 122 RAVMYTEAKQGFEKPVLAVSAEERTNVPELWEAMMKMWNTRVESG 166
+M+ A + PVL +SA ++ +V W+ + + +T +G
Sbjct: 2203108 ALMMFRHASPNWTPPVLTLSALQKDSVAGFWDEVKRYRDTLTPTG 2203242
Score = 86.7 bits (213), Expect = 2e-15, Method: Composition-based stats.
Identities = 63/155 (40%), Positives = 89/155 (57%), Gaps = 3/155 (1%)
Frame = -3
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
G++LGD+ RM G +IR S GHLGG++ +++++F+AA FDVV VETVGVG
Sbjct: 1231260 GALLGDRVRMGGHGADERVFIRSLSSRGHLGGLSRTTAQLVDVFDAAGFDVVVVETVGVG 1231081
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKND---GSRKLLAQQTIS 118
QSE + + D +++ PP GDE+Q IK GI+E+AD++VV K D +R +L QT
Sbjct: 1231080 QSEVEIGRVADTNVVVCPPGLGDEVQAIKAGILEIADILVVNKGDSPLAARTMLDLQTSG 1230901
Query: 119 AYTRAVMYTEAKQGFEKPVLAVSAEERTNVPELWE 153
R +T PVL A + EL E
Sbjct: 1230900 GLQRDEHWT-------VPVLRTVATSGEGIAELVE 1230817
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 30/105 (28%), Positives = 52/105 (49%)
Frame = +2
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
G++LGD+ RM + H N ++R + +++ EV+ + FD+V VET G+G
Sbjct: 2219033 GALLGDRIRMNAIE-HENIFMRSLATRETGSEISAALPEVIAATKLVGFDLVVVETSGIG 2219209
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKND 106
Q D+ + ++ P G Q K +++ AD V + K D
Sbjct: 2219210 QGNAAIVPYVDLSLYVMTPEFGAASQLEKIDMLDFADFVAINKFD 2219344
>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome
Length = 4501104
Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats.
Identities = 76/156 (48%), Positives = 96/156 (61%)
Frame = -1
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRME+L ++IRPSPS G LGGV + E + + EAA FDV+ +ETVGVG
Sbjct: 4304892 GSILGDKTRMEQLCQREEAFIRPSPSAGSLGGVAEKTREAMLLCEAAGFDVIIIETVGVG 4304713
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSET + DM LL P +GD+LQ IKKGIVE+ADMVV+ K D R+ A
Sbjct: 4304712 QSETTVAGMVDMFCLLQLPNAGDDLQAIKKGIVEIADMVVINKADIDRQATAVVRAQWRN 4304533
Query: 122 RAVMYTEAKQGFEKPVLAVSAEERTNVPELWEAMMK 157
M A + PV+A+SA + + E WE + K
Sbjct: 4304532 ALHMLRPASPNWAPPVIALSALHKEGIAEFWEQVEK 4304425
Score = 52.0 bits (123), Expect = 6e-05, Method: Composition-based stats.
Identities = 32/105 (30%), Positives = 53/105 (50%)
Frame = +2
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
G++LGD+ RM + HPN ++R + ++ EV+ + A FD+V VET G+G
Sbjct: 274559 GALLGDRIRMNAIE-HPNIFMRSLATRDTGSEISVALPEVIAACKLAGFDLVVVETSGIG 274735
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKND 106
Q D+ + ++ P G Q K +++ AD V + K D
Sbjct: 274736 QGNAAIVPFVDLSLYVMTPEFGAASQLEKIDMLDFADFVAINKFD 274870
>emb|CR626927.1| Bacteroides fragilis NCTC 9343, complete genome
Length = 5205140
Score = 139 bits (349), Expect = 3e-31, Method: Composition-based stats.
Identities = 73/153 (47%), Positives = 98/153 (64%), Gaps = 1/153 (0%)
Frame = +3
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRME+L +HP S+IRPSPS G LGGV + E + + EAA FD +FVETVGVG
Sbjct: 884727 GSILGDKTRMEQLSVHPKSFIRPSPSAGSLGGVARKTRETIILCEAAGFDKIFVETVGVG 884906
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSET + D +L+ +GDELQGIK+GI+E+AD +V+ K DGS A+ + +
Sbjct: 884907 QSETAVHSMVDFFLLIQLAGTGDELQGIKRGIMEMADGIVINKADGSNIDKAKLAAAQFR 885086
Query: 122 RAV-MYTEAKQGFEKPVLAVSAEERTNVPELWE 153
A+ ++ G+ VL S V E+W+
Sbjct: 885087 NALHLFPAPDSGWTPRVLTYSGFYNLGVKEIWD 885185
>dbj|AP006841.1| Bacteroides fragilis YCH46 DNA, complete genome
Length = 5277274
Score = 139 bits (349), Expect = 3e-31, Method: Composition-based stats.
Identities = 73/153 (47%), Positives = 98/153 (64%), Gaps = 1/153 (0%)
Frame = +3
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRME+L +HP S+IRPSPS G LGGV + E + + EAA FD +FVETVGVG
Sbjct: 946005 GSILGDKTRMEQLSVHPKSFIRPSPSAGSLGGVARKTRETIILCEAAGFDKIFVETVGVG 946184
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSET + D +L+ +GDELQGIK+GI+E+AD +V+ K DGS A+ + +
Sbjct: 946185 QSETAVHSMVDFFLLIQLAGTGDELQGIKRGIMEMADGIVINKADGSNIDKAKLAAAQFR 946364
Query: 122 RAV-MYTEAKQGFEKPVLAVSAEERTNVPELWE 153
A+ ++ G+ VL S V E+W+
Sbjct: 946365 NALHLFPAPDSGWTPRVLTYSGFYNLGVKEIWD 946463
>gb|CP001001.1| Methylobacterium radiotolerans JCM 2831, complete genome
Length = 6077833
Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats.
Identities = 77/157 (49%), Positives = 101/157 (64%), Gaps = 2/157 (1%)
Frame = +2
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRM +L P ++IRPSPS G LGGV ++ E + + EAA FDV+ VETVGVG
Sbjct: 3692522 GSILGDKTRMARLSHDPGAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVG 3692701
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKND-GSRKLLAQQTISAY 120
QSET DLTD ++L+ P +GDELQGIKKGI+E+ADM+ V K D G + A S Y
Sbjct: 3692702 QSETAVADLTDFFLVLMLPGAGDELQGIKKGILELADMIAVNKADAGEAEQRANAAASEY 3692881
Query: 121 TRAV-MYTEAKQGFEKPVLAVSAEERTNVPELWEAMM 156
A+ + T A + PV+ +S + LW ++
Sbjct: 3692882 RAALHILTPASATWTPPVVTISGFHNLRLDALWAKIV 3692992
>gb|CP001032.1| Opitutus terrae PB90-1, complete genome
Length = 5957605
Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats.
Identities = 74/166 (44%), Positives = 100/166 (60%), Gaps = 1/166 (0%)
Frame = -3
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDK RME+L ++IRPSPSGG LGGV + E + + EAA FDVV VETVGVG
Sbjct: 4325219 GSILGDKVRMEQLSRQAGAFIRPSPSGGSLGGVARKTREAILVCEAAGFDVVLVETVGVG 4325040
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
Q+E + + D ++L+ +GDE+QGIKKG++E+AD +V+ K DG T +
Sbjct: 4325039 QNEVTVRSMVDFFLVLMIAGAGDEMQGIKKGVIELADALVINKADGDNLPRCTATQAEMK 4324860
Query: 122 RAVMYTE-AKQGFEKPVLAVSAEERTNVPELWEAMMKMWNTRVESG 166
R + Y QG+ P L S+ VPE+W+A +N SG
Sbjct: 4324859 RVLHYLHPPTQGWHTPALLASSLTHAGVPEVWKATEDFFNNTRGSG 4324722
>emb|BX935657.1| Gallus gallus finished cDNA, clone ChEST326a11
Length = 1406
Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats.
Identities = 73/166 (43%), Positives = 106/166 (63%), Gaps = 1/166 (0%)
Frame = +2
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GS+LGDKTRM +L N+YIRPSP+ G LGGVT E + + E ++VV VETVGVG
Sbjct: 608 GSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGVTRTTNEAILLCEGGGYNVVLVETVGVG 787
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSE D+ DM IL++PPA GDELQGIK+GI+E+AD+V + K DG + A++ + Y
Sbjct: 788 QSEFAVADMVDMFILVLPPAGGDELQGIKRGIIEMADLVAINKADGDLIVPARRIQAEYV 967
Query: 122 RAVMYTEAKQGFEKP-VLAVSAEERTNVPELWEAMMKMWNTRVESG 166
A+ + +P V+ +SA+ + ++W+ M + + + SG
Sbjct: 968 SAMKLLRKRSKVWRPKVMRISAKTGEGISDMWDKMTEFRDLMLTSG 1105
>ref|XM_002187808.1| PREDICTED: Taeniopygia guttata similar to MMAA protein
(LOC100218717), mRNA
Length = 1305
Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats.
Identities = 71/161 (44%), Positives = 102/161 (63%), Gaps = 1/161 (0%)
Frame = +1
Query: 7 DKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVGQSETQ 66
DKTRM +L N+YIRPSP+ G LGGVT E + + E +D+V VETVGVGQSE
Sbjct: 559 DKTRMTELSRDMNAYIRPSPTSGTLGGVTRTTNEAILLCEGGGYDIVLVETVGVGQSEFA 738
Query: 67 CKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYTRAVMY 126
D+ DM ILL+PPA GDELQGIK+GI+E+AD+VV+ K DG + A++ + Y A+
Sbjct: 739 VADMVDMFILLLPPAGGDELQGIKRGIIEMADLVVINKADGDLVVPARRIQAEYISAMKL 918
Query: 127 TEAKQGFEKP-VLAVSAEERTNVPELWEAMMKMWNTRVESG 166
+ +P V+ +SA+ + ++W+ M + + + SG
Sbjct: 919 LHKRSKVWRPKVMRISAKTGEGISDVWDKMSEFRDLMLTSG 1041
>gb|AF416776.1| Methylobacterium extorquens strain AM1 GTPase/ATPase (meaB), putative
isopropylmalate dehydratase (leuD), tryptophanyl-tRNA
synthetase (trpS), and ArsR-type transcriptional
regulator genes, complete cds; and unknown genes
Length = 8217
Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats.
Identities = 77/153 (50%), Positives = 100/153 (65%), Gaps = 2/153 (1%)
Frame = +1
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRM +L I N++IRPSPS G LGGV ++ E + + EAA FDV+ VETVGVG
Sbjct: 4273 GSILGDKTRMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVG 4452
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTK-NDGSRKLLAQQTISAY 120
QSET DLTD ++L+ P +GDELQGIKKGI+E+ADM+ V K +DG + A S Y
Sbjct: 4453 QSETAVADLTDFFLVLMLPGAGDELQGIKKGILELADMIAVNKADDGDGERRASAAASEY 4632
Query: 121 TRAV-MYTEAKQGFEKPVLAVSAEERTNVPELW 152
A+ + T + PV+ +S + LW
Sbjct: 4633 RAALRILTPPSATWTPPVVTISGLHGKGLDSLW 4731
>gb|CP000249.1| Frankia sp. CcI3, complete genome
Length = 5433628
Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats.
Identities = 76/168 (45%), Positives = 102/168 (60%), Gaps = 3/168 (1%)
Frame = -2
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRM L P ++IRPSP+ G LGGV E + + EAA +DVV VETVGVG
Sbjct: 3562827 GSILGDKTRMAALSTDPAAFIRPSPTAGTLGGVAKATREAMVVMEAAGYDVVLVETVGVG 3562648
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSET D+ D + L +GD+LQGIKKG++E+AD++ V K DG +L A++
Sbjct: 3562647 QSETTVADMVDTFLFLTLARTGDQLQGIKKGVLELADVIAVNKADGPHELDARRAARELA 3562468
Query: 122 RAVMYTEAKQG---FEKPVLAVSAEERTNVPELWEAMMKMWNTRVESG 166
A+ + G + PVL SA ERT + +W ++K +T SG
Sbjct: 3562467 GALRLLQGPAGLRDWNTPVLTCSAVERTGLDTVWAQIVKHQDTLDASG 3562324
Score = 88.6 bits (218), Expect = 6e-16, Method: Composition-based stats.
Identities = 44/105 (41%), Positives = 66/105 (62%)
Frame = +3
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
G++LGD+ RM + P +IR + G LGG+++ + L + +A FDVV +ETVGVG
Sbjct: 2542500 GALLGDRIRMVEHATDPGVFIRSLATRGSLGGLSTATPQALRVLDAVGFDVVLIETVGVG 2542679
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKND 106
Q+E L D ++LV P GD +Q K G++E+AD++VV K D
Sbjct: 2542680 QAEVDIAALADTTLVLVAPGMGDGVQAAKAGVLEIADVLVVNKAD 2542814
Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 36/123 (29%), Positives = 63/123 (51%), Gaps = 7/123 (5%)
Frame = -2
Query: 2 GSILGDKTRMEKLG--IHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVG 59
G++LGD+ RM LG N + R + V + +V++ +AA FD+V VET G
Sbjct: 4364802 GALLGDRIRMNSLGDGTAGNVFFRSLATRTGGSEVPAPLADVIKACQAAGFDLVIVETPG 4364623
Query: 60 VGQSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTK-----NDGSRKLLAQ 114
+GQ + D+ + ++ P G Q K +++ AD+V V K + +R+ +A+
Sbjct: 4364622 IGQGDAAIVPFCDVSLYVMTPEYGAASQLEKIDMLDFADVVAVNKFERRGAEDARRDVAR 4364443
Query: 115 QTI 117
Q +
Sbjct: 4364442 QLV 4364434
>gb|CP001340.1| Caulobacter crescentus NA1000, complete genome
Length = 4042929
Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats.
Identities = 74/157 (47%), Positives = 102/157 (64%), Gaps = 1/157 (0%)
Frame = +2
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRME+L + N++IRPSPSGG LGGV + E + + EAA FDVV +ETVGVG
Sbjct: 2719559 GSILGDKTRMEQLSVQANAFIRPSPSGGALGGVARKTREAMLLCEAAGFDVVIIETVGVG 2719738
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSET D+ D+ + L+ P GDELQGIKKG++E+AD++V+ K D A+++ Y
Sbjct: 2719739 QSETVVADMVDIFLALLIPGGGDELQGIKKGLIELADLLVINKADAD-PAKAERSARDYR 2719915
Query: 122 RAV-MYTEAKQGFEKPVLAVSAEERTNVPELWEAMMK 157
A+ + T A + PVL S + LW +++
Sbjct: 2719916 NALHILTPAHPDWTPPVLTASGLTGQGLDVLWTQILR 2720026
>gb|AE005673.1| Caulobacter crescentus CB15, complete genome
Length = 4016947
Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats.
Identities = 74/157 (47%), Positives = 102/157 (64%), Gaps = 1/157 (0%)
Frame = +3
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRME+L + N++IRPSPSGG LGGV + E + + EAA FDVV +ETVGVG
Sbjct: 2693577 GSILGDKTRMEQLSVQANAFIRPSPSGGALGGVARKTREAMLLCEAAGFDVVIIETVGVG 2693756
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSET D+ D+ + L+ P GDELQGIKKG++E+AD++V+ K D A+++ Y
Sbjct: 2693757 QSETVVADMVDIFLALLIPGGGDELQGIKKGLIELADLLVINKADAD-PAKAERSARDYR 2693933
Query: 122 RAV-MYTEAKQGFEKPVLAVSAEERTNVPELWEAMMK 157
A+ + T A + PVL S + LW +++
Sbjct: 2693934 NALHILTPAHPDWTPPVLTASGLTGQGLDVLWTQILR 2694044
>gb|M91449.1|CCRPEPNPLE Caulobacter crescentus aminopeptidase N (pepN) gene, partial cds;
non-motile and phage-resistance protein (pleC) gene,
complete cds; and unknown gene
Length = 4517
Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats.
Identities = 74/157 (47%), Positives = 102/157 (64%), Gaps = 1/157 (0%)
Frame = +1
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRME+L + N++IRPSPSGG LGGV + E + + EAA FDVV +ETVGVG
Sbjct: 3478 GSILGDKTRMEQLSVQANAFIRPSPSGGALGGVARKTREAMLLCEAAGFDVVIIETVGVG 3657
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSET D+ D+ + L+ P GDELQGIKKG++E+AD++V+ K D A+++ Y
Sbjct: 3658 QSETVVADMVDIFLALLIPGGGDELQGIKKGLIELADLLVINKADAD-PAKAERSARDYR 3834
Query: 122 RAV-MYTEAKQGFEKPVLAVSAEERTNVPELWEAMMK 157
A+ + T A + PVL S + LW +++
Sbjct: 3835 NALHILTPAHPDWTPPVLTASGLTGQGLDVLWTQILR 3945
>gb|CP000473.1| Solibacter usitatus Ellin6076, complete genome
Length = 9965640
Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats.
Identities = 69/156 (44%), Positives = 103/156 (66%), Gaps = 1/156 (0%)
Frame = -1
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRME+L ++ ++IRPSPS GHLGGV R E + + EAA + + VETVGVG
Sbjct: 8743404 GSILGDKTRMERLAVNERAFIRPSPSQGHLGGVARRTRETILLCEAAGYRNILVETVGVG 8743225
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSET + +TD +LL+ +GDELQG+K+GI+E+ D + + K DG ++ A++ Y
Sbjct: 8743224 QSETAVRSMTDFFLLLMLAGAGDELQGVKRGIIEMLDGMAINKADGDNRVKAERARVEYA 8743045
Query: 122 RAV-MYTEAKQGFEKPVLAVSAEERTNVPELWEAMM 156
A+ ++ + G+ VL SA + + ELW+ ++
Sbjct: 8743044 GALHLFPASADGWTPRVLTCSAIAKEGISELWQMVL 8742937
Score = 80.9 bits (198), Expect = 1e-13, Method: Composition-based stats.
Identities = 49/154 (31%), Positives = 82/154 (53%)
Frame = -2
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
G+ILGD+ RM++ P +IR + G LGG+ ++ + +AA D V +ETVGVG
Sbjct: 8877212 GAILGDRIRMQQHHADPGIFIRSMATRGTLGGMARATADLARLMDAAGKDYVVIETVGVG 8877033
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
Q E + + + ++++ P GD++Q +K GI+E+AD+ V+ K+D + + A
Sbjct: 8877032 QDEIEITSVAQVTVVVLVPGMGDDVQALKAGIMEIADIFVINKSDHPGAERVEMELHA-- 8876859
Query: 122 RAVMYTEAKQGFEKPVLAVSAEERTNVPELWEAM 155
+GF PV+ A E + L EA+
Sbjct: 8876858 ---------EGFTCPVIRTVASEGMGISSLVEAI 8876784
>emb|CU207366.1| Gramella forsetii KT0803 complete circular genome
Length = 3798465
Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats.
Identities = 77/165 (46%), Positives = 105/165 (63%), Gaps = 1/165 (0%)
Frame = -3
Query: 1 HGSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGV 60
HGSILGDKTRME L ++IRPSPSG LGGV + E + + EAA FDV+ +ETVGV
Sbjct: 585904 HGSILGDKTRMENLVTKEEAFIRPSPSGDSLGGVARKTRESIILCEAAGFDVILIETVGV 585725
Query: 61 GQSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAY 120
GQSET +TD +LL +GDELQGIK+GIVE+AD +V+ K DG + A++ +
Sbjct: 585724 GQSETTVHSMTDFFLLLKLAGAGDELQGIKRGIVEMADAIVINKADGENQNPAREAKLEF 585545
Query: 121 TRAVMYTEAKQGFEKP-VLAVSAEERTNVPELWEAMMKMWNTRVE 164
RA+ AK+ KP V SA V ++W+ M+ + ++V+
Sbjct: 585544 NRALQLYPAKESEWKPEVKLCSALYNEGVSDIWK-MINDFKSKVD 585413
Score = 61.6 bits (148), Expect = 7e-08, Method: Composition-based stats.
Identities = 32/105 (30%), Positives = 61/105 (58%)
Frame = +2
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
G++LGD+ RM + H Y+R + ++ E +++ +AAN+D++ +ET G+G
Sbjct: 554000 GALLGDRIRMNSIN-HERVYMRSLATRQANLALSKYVAEAVDVLKAANYDLIILETSGIG 554176
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKND 106
QS+T+ D +D+ + ++ P G Q K +++ AD+V + K D
Sbjct: 554177 QSDTEILDHSDVSLYVMTPEFGAATQLEKIDMLDFADLVAINKFD 554311
>gb|CP000492.1| Chlorobium phaeobacteroides DSM 266, complete genome
Length = 3133902
Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats.
Identities = 73/153 (47%), Positives = 99/153 (64%), Gaps = 1/153 (0%)
Frame = -2
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDK RMEKL +YIRPS S G+LGG + + E + + EAA +DV+ VETVGVG
Sbjct: 1310417 GSILGDKARMEKLATKKEAYIRPSASSGYLGGTSPKTHETILLCEAAGYDVIIVETVGVG 1310238
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSE +TD +LL+ P SGDELQGIK+GI+E+AD + VTK DG + +LA + +
Sbjct: 1310237 QSEILVDSMTDFTLLLMLPGSGDELQGIKRGIMEIADAIAVTKTDGEQSVLAAISKAECD 1310058
Query: 122 RAVMYTEAKQGF-EKPVLAVSAEERTNVPELWE 153
A+ +K F ++ V SA T + E+W+
Sbjct: 1310057 AALRMLPSKYPFWKREVFLTSAITATGIREVWQ 1309959
>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome
Length = 4406967
Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats.
Identities = 74/156 (47%), Positives = 99/156 (63%), Gaps = 1/156 (0%)
Frame = +1
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRM +L +YIRPSP+ G LGGV ++ E + + EAA FDVV VETVG G
Sbjct: 2901943 GSILGDKTRMARLSAAEAAYIRPSPAAGTLGGVAAKTREAMLLCEAAGFDVVLVETVGTG 2902122
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSET D+TD + L+ P +GDELQGIKKGIVE+ADM+ V K DG A + + Y
Sbjct: 2902123 QSETAVCDMTDFFLALMLPGAGDELQGIKKGIVELADMIAVNKADGDNVGRANRAAAEYR 2902302
Query: 122 RAV-MYTEAKQGFEKPVLAVSAEERTNVPELWEAMM 156
A+ + + + + PVL S + + LW+ ++
Sbjct: 2902303 SALRILSPRSEHWHPPVLTYSGLTGSGIDTLWQKVL 2902410
>emb|AM406670.1| Azoarcus sp. BH72, complete genome
Length = 4376040
Score = 138 bits (347), Expect = 7e-31, Method: Composition-based stats.
Identities = 76/165 (46%), Positives = 99/165 (60%)
Frame = +2
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRME L +P ++IRPSPS G LGGV + E L + EAA FDV+ VETVGVG
Sbjct: 724940 GSILGDKTRMELLSQNPAAFIRPSPSAGSLGGVAEKTRETLLVCEAAGFDVIIVETVGVG 725119
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSET +TD+ LL P +GD+LQ IKKGI+E+AD++V+ K D + T
Sbjct: 725120 QSETAVAGMTDIFCLLQLPNAGDDLQAIKKGIMEIADLIVINKADIDAGAAMRAKSQMKT 725299
Query: 122 RAVMYTEAKQGFEKPVLAVSAEERTNVPELWEAMMKMWNTRVESG 166
M A + PVL +SA ++ + E W A+ +SG
Sbjct: 725300 ALHMLRPASPNWTVPVLTLSALKKDGIAEFWNAVQDYRGAMTKSG 725434
Score = 48.1 bits (113), Expect = 8e-04, Method: Composition-based stats.
Identities = 30/105 (28%), Positives = 54/105 (51%)
Frame = +2
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
G++LGD+ RM + H + ++R + V++ EV+ + + FD+V VET G+G
Sbjct: 740960 GALLGDRIRMNAIE-HEHIFMRSLATRDTGSEVSAALPEVIAACKLSGFDLVIVETSGIG 741136
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKND 106
Q + D+ + ++ P G Q K +++ AD V + K D
Sbjct: 741137 QGDAAIVPFVDLSLYVMTPEFGAASQLEKIDMLDFADFVAINKFD 741271
>ref|XM_001376996.1| PREDICTED: Monodelphis domestica similar to methylmalonic aciduria
type A (LOC100026406), mRNA
Length = 1251
Score = 137 bits (346), Expect = 8e-31, Method: Composition-based stats.
Identities = 69/150 (46%), Positives = 97/150 (64%), Gaps = 1/150 (0%)
Frame = +1
Query: 7 DKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVGQSETQ 66
DKTRM +L N+YIRPSP+ G LGGVT E + + E +DV+ +ETVGVGQSE
Sbjct: 571 DKTRMIELSKDMNAYIRPSPTRGTLGGVTRTTNEAILLCEGGGYDVILIETVGVGQSEFA 750
Query: 67 CKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYTRAVMY 126
D+ DM +LL+PPA GDELQGIK+GI+E+AD+V +TK DG + A++ + YT A+
Sbjct: 751 VADMVDMFVLLLPPAGGDELQGIKRGIIEMADLVAITKADGDLIVPARRIQTEYTSAMKL 930
Query: 127 TEAKQGFEKP-VLAVSAEERTNVPELWEAM 155
+ +P V+ +SA + E+W+ M
Sbjct: 931 LRKRSKVWRPKVVRISARTGEGITEMWDKM 1020
>gb|CP001087.1| Desulfobacterium autotrophicum HRM2, complete genome
Length = 5589073
Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats.
Identities = 74/166 (44%), Positives = 104/166 (62%), Gaps = 1/166 (0%)
Frame = -1
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRME+L HP+++IRPSPSG LGGV ++ E L + EAA FDVV VETVGVG
Sbjct: 3679216 GSILGDKTRMEQLAAHPSTFIRPSPSGRTLGGVAAKTRETLLVCEAAGFDVVLVETVGVG 3679037
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSET + D + L+ +GDELQGIKKG++EVAD + + K DG A++ +
Sbjct: 3679036 QSETSVATMVDFFLALMITGAGDELQGIKKGVLEVADAIAINKCDGDNVERAEKARLEFE 3678857
Query: 122 RAV-MYTEAKQGFEKPVLAVSAEERTNVPELWEAMMKMWNTRVESG 166
A+ + T + PVL S+ + ++WE +++ ++G
Sbjct: 3678856 IAMHIVTPESPSWRPPVLTCSSILKNGTQQVWETVLEHRRIMTQTG 3678719
Score = 52.0 bits (123), Expect = 6e-05, Method: Composition-based stats.
Identities = 28/103 (27%), Positives = 57/103 (55%)
Frame = +3
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
G++LGD+ R+ + + Y+R + + + E +E+ +AA +D++ ET G+G
Sbjct: 1146495 GALLGDRIRLNSIE-NGRVYMRSLATREAQSELPASLAEAIEVVKAAGYDIILAETAGIG 1146671
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTK 104
Q +++ DL D+ + ++ G Q K +++ AD+VV+ K
Sbjct: 1146672 QGDSRIIDLVDLSVYVMTAEFGAPSQLEKIDMLDYADIVVINK 1146800
>dbj|AK119876.1| Oryza sativa Japonica Group cDNA clone:002-179-F07, full insert
sequence
Length = 2955
Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats.
Identities = 75/166 (45%), Positives = 104/166 (62%), Gaps = 1/166 (0%)
Frame = +2
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
G+ILGDKTRM +L HPN+++RPSP+ G LGGV+ ++ + I EAA +D V VETVGVG
Sbjct: 1298 GAILGDKTRMARLSSHPNAFVRPSPARGTLGGVSRATYDAMVICEAAGYDTVLVETVGVG 1477
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSE DL D ++L++PP GD+LQ IK+GI+EVAD+V+V K DG+ + A + + Y
Sbjct: 1478 QSEVAVADLVDCVLLVMPPVGGDDLQMIKRGIMEVADVVLVDKADGATEAAATRAAAEYG 1657
Query: 122 RAV-MYTEAKQGFEKPVLAVSAEERTNVPELWEAMMKMWNTRVESG 166
+ + G+ VLAVSA VP L + +SG
Sbjct: 1658 GCLHLMPHRYHGWSPQVLAVSAYTGKGVPALARLVAHFQQALTDSG 1795
>gb|CP001101.1| Chlorobium phaeobacteroides BS1, complete genome
Length = 2736403
Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats.
Identities = 73/169 (43%), Positives = 104/169 (61%), Gaps = 6/169 (3%)
Frame = -2
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDK RMEKL + YIRPSPS GHLGG +R E + + EAA +D++ +ETVGVG
Sbjct: 1260648 GSILGDKARMEKLSGRKDVYIRPSPSSGHLGGTAARTHEAILLCEAAGYDIIIIETVGVG 1260469
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDG-SRKLLAQQTISAY 120
QSE + + D ++LL+ P SGDELQGIK+GI+E+AD + +TK D S K ++ S
Sbjct: 1260468 QSEISVESMADYILLLILPGSGDELQGIKRGIMEIADGIAITKTDSTSEKSISLSKTSCE 1260289
Query: 121 TRAVMYTEAKQGFEKPVLAVSAEERTNVPELWEAMMKMW-----NTRVE 164
+ + + + VL SA + ELW+ + +++ N R+E
Sbjct: 1260288 SALHLLMKKNPDWHPQVLRTSALTGEGINELWDNIQQLYALLEKNNRLE 1260142
>gb|CP000325.1| Mycobacterium ulcerans Agy99, complete genome
Length = 5631606
Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats.
Identities = 79/168 (47%), Positives = 106/168 (63%), Gaps = 3/168 (1%)
Frame = +1
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRM +L +HP++Y+RPSP+ G LGGV E + + EAA FDVV VETVGVG
Sbjct: 1632562 GSILGDKTRMARLAMHPDAYVRPSPTSGTLGGVAKATRESVVLLEAAGFDVVLVETVGVG 1632741
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSR---KLLAQQTIS 118
QSE ++ D +LL +GD+LQGIKKG++E+AD+VVV K DG LA + +S
Sbjct: 1632742 QSEVAVANMVDTFVLLTLARTGDQLQGIKKGVLELADIVVVNKADGEHLRDARLAARELS 1632921
Query: 119 AYTRAVMYTEAKQGFEKPVLAVSAEERTNVPELWEAMMKMWNTRVESG 166
R + E + PVL +SA E T + +L EA+ + E+G
Sbjct: 1632922 GAIRLIYPRETI--WRPPVLTMSAVEGTGLTQLGEAVERHRQVLTEAG 1633059
Score = 79.0 bits (193), Expect = 5e-13, Method: Composition-based stats.
Identities = 44/116 (37%), Positives = 69/116 (59%)
Frame = -1
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
G++LGD+ RM IR S GHLGG+ + + + A +DVV ++TVGVG
Sbjct: 366984 GALLGDRIRMTAHVNDSEVLIRSVASRGHLGGLAASVPAAIRLLGALRYDVVLLKTVGVG 366805
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTI 117
QSE + + D ++++ P +GD +Q K G++EVAD+V V K D ++ A+QT+
Sbjct: 366804 QSEIEVVAVADPTVVVLNPGTGDAVQAAKAGLLEVADIVAVNKAD---RVGAEQTV 366646
>gb|CP000859.1| Desulfococcus oleovorans Hxd3, complete genome
Length = 3944167
Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats.
Identities = 79/166 (47%), Positives = 100/166 (60%), Gaps = 1/166 (0%)
Frame = -3
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GS+LGDKTRMEKL P ++IRPSPSG LGG+ +R E + + EAA FDVV VETVGVG
Sbjct: 88307 GSVLGDKTRMEKLSADPRAFIRPSPSGKTLGGIAARTRESMLVCEAAGFDVVLVETVGVG 88128
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSET + D ++L +GDELQGIKKGI+E+AD V VTK DG A Q Y
Sbjct: 88127 QSETAVAAMVDFFLVLALAGAGDELQGIKKGILELADAVAVTKADGENIKAADQARQQYE 87948
Query: 122 RAV-MYTEAKQGFEKPVLAVSAEERTNVPELWEAMMKMWNTRVESG 166
A+ M + + + V SA N+ +WE ++ T SG
Sbjct: 87947 VALHMLSPSGSAWCPRVFTCSALAGENIDTIWETVLAHRKTLQASG 87810
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/105 (29%), Positives = 56/105 (53%)
Frame = -1
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
G++LGD+ RM + Y+R + + +++ I +AA FD+V VET G+G
Sbjct: 2660113 GALLGDRIRMNAI-TDSRVYMRSLATRASATELPPAMADIIHIVKAAGFDLVMVETAGIG 2659937
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKND 106
Q +++ DL D+ + ++ G Q K +++ AD+V + K D
Sbjct: 2659936 QGDSRIHDLVDVSLYVMTSEFGAASQLEKIDMLDFADIVAINKFD 2659802
>gb|CP000655.1| Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1, complete
genome
Length = 2159490
Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats.
Identities = 77/164 (46%), Positives = 104/164 (63%), Gaps = 9/164 (5%)
Frame = +2
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRME+L + N++IRPSPS LGGV + E + + EAA FD++ VETVGVG
Sbjct: 905726 GSILGDKTRMERLSVLDNAFIRPSPSSLTLGGVAEKTREAMLVAEAAGFDIIIVETVGVG 905905
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKN--DGSRKLLAQQTISA 119
QSE +TDM +LL P +GD+LQ IKKG++E+AD++V+ K D + AQ I++
Sbjct: 905906 QSEIAVSGMTDMFLLLQLPNAGDDLQAIKKGVMEIADLIVINKVDIDPDAAMRAQLFITS 906085
Query: 120 YTRAVMY------TEAKQGFEKP-VLAVSAEERTNVPELWEAMM 156
R + + Q F P V+ +SA E VPELWE +M
Sbjct: 906086 SLRLLGFQGNPDHASHNQDFWHPTVMTLSALEGKGVPELWEKIM 906217
>gb|AE015924.1| Porphyromonas gingivalis W83, complete genome
Length = 2343476
Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats.
Identities = 70/155 (45%), Positives = 99/155 (63%), Gaps = 1/155 (0%)
Frame = +2
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRME+L N++IRPSP+ G LGGV + E + + EAA FD +FVETVGVG
Sbjct: 355115 GSILGDKTRMEQLSREKNAFIRPSPAAGSLGGVARKTRETIVLCEAAGFDTIFVETVGVG 355294
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSET + D +L+ +GDELQGIK+GI+E+AD ++V K DG A S Y
Sbjct: 355295 QSETAVHSMVDFFLLIQLAGTGDELQGIKRGIMEMADGIIVNKADGDNIDKANLAASHYR 355474
Query: 122 RAV-MYTEAKQGFEKPVLAVSAEERTNVPELWEAM 155
A+ ++ +A+ G++ VL S + ++W+ +
Sbjct: 355475 NALRLFPQAESGWKPRVLTYSGYYAIGIKDIWDMI 355579
>dbj|AP009380.1| Porphyromonas gingivalis ATCC 33277 DNA, complete genome
Length = 2354886
Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats.
Identities = 70/155 (45%), Positives = 99/155 (63%), Gaps = 1/155 (0%)
Frame = -2
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRME+L N++IRPSP+ G LGGV + E + + EAA FD +FVETVGVG
Sbjct: 1836848 GSILGDKTRMEQLSREKNAFIRPSPAAGSLGGVARKTRETIVLCEAAGFDTIFVETVGVG 1836669
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSET + D +L+ +GDELQGIK+GI+E+AD ++V K DG A S Y
Sbjct: 1836668 QSETAVHSMVDFFLLIQLAGTGDELQGIKRGIMEMADGIIVNKADGDNIDKANLAASHYR 1836489
Query: 122 RAV-MYTEAKQGFEKPVLAVSAEERTNVPELWEAM 155
A+ ++ +A+ G++ VL S + ++W+ +
Sbjct: 1836488 NALRLFPQAESGWKPRVLTYSGYYAIGIKDIWDMI 1836384
>dbj|BA000043.1| Geobacillus kaustophilus HTA426 DNA, complete genome
Length = 3544776
Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats.
Identities = 72/166 (43%), Positives = 100/166 (60%), Gaps = 1/166 (0%)
Frame = -3
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRME L HP+++IRPSPSGG LGGV + E + + EAA +D++ VETVGVG
Sbjct: 2397202 GSILGDKTRMEALARHPHAFIRPSPSGGALGGVHRKTRETMMLCEAAGYDIILVETVGVG 2397023
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSE + + D +LL +GDELQG+K+GI+E+ D +V+ K DG K A+ Y
Sbjct: 2397022 QSEFVVRGMVDFFLLLALTGAGDELQGMKRGIMELVDAIVINKADGDNKEKAKAAQKEYN 2396843
Query: 122 RAVMYTE-AKQGFEKPVLAVSAEERTNVPELWEAMMKMWNTRVESG 166
+ + Y A G+E SA + ++W + T +SG
Sbjct: 2396842 QFLHYLRPATPGWETKAYTCSALLGEGIADMWRVIQTFVKTTKQSG 2396705
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/103 (26%), Positives = 55/103 (53%)
Frame = -1
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
G++LGD+ RM + P Y+R + ++ + + + +AA FD+V +ET G+G
Sbjct: 3432162 GALLGDRIRMNSIN-SPRVYMRSLATRHSRTELSPAIRDAISVVKAAGFDLVIIETSGIG 3431986
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTK 104
Q + ++ D+ + ++ G Q K +++ AD++V+ K
Sbjct: 3431985 QGDAAITEVCDVSMYVMTSEFGAPTQLEKIDMIDYADLIVINK 3431857
>gb|CP001150.1| Rhodobacter sphaeroides KD131 chromosome 1, complete sequence
Length = 3152792
Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats.
Identities = 81/169 (47%), Positives = 109/169 (64%), Gaps = 4/169 (2%)
Frame = +2
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRME+L P ++IRPSPS HLGGV R E + + EAA FDV+ +ETVGVG
Sbjct: 320009 GSILGDKTRMERLSRDPQAFIRPSPSQTHLGGVARRTREAVALCEAAGFDVILIETVGVG 320188
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSET L D+ +LL+ PA GDELQG+K+GI+E+AD+++V K DG K A +T++ Y
Sbjct: 320189 QSETVVAQLCDLFLLLLAPAGGDELQGVKRGIMEMADLILVNKADGDLKPAALRTVADYA 320368
Query: 122 RAVMYTEAK----QGFEKPVLAVSAEERTNVPELWEAMMKMWNTRVESG 166
A+ + +GF K + VSA E + + W M + R E+G
Sbjct: 320369 GALRLLRRRPQDPEGFPK-AMPVSALEEQGLADAWTEMQALVAWRRETG 320512
>gb|CP000463.1| Rhodopseudomonas palustris BisA53, complete genome
Length = 5505494
Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats.
Identities = 73/152 (48%), Positives = 98/152 (64%), Gaps = 1/152 (0%)
Frame = -1
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRM +L + ++IRPSP+ G LGGV ++ E + + EAA FDVV VETVG+G
Sbjct: 2060375 GSILGDKTRMARLSVAEAAFIRPSPAAGTLGGVAAKTREAMLLCEAAGFDVVLVETVGIG 2060196
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSET D+TD + L+ P GDELQGIKKG+VE+ADM+ + K DG A T + Y
Sbjct: 2060195 QSETAVCDMTDFFLALMLPGGGDELQGIKKGLVELADMIAINKADGDYIKRANLTAAEYR 2060016
Query: 122 RAV-MYTEAKQGFEKPVLAVSAEERTNVPELW 152
A+ + T ++ PV+ SA + +LW
Sbjct: 2060015 GALHILTPRSVHWQVPVVTYSAMTGAGIADLW 2059920
>emb|AM398681.1| Flavobacterium psychrophilum JIP02/86 complete genome
Length = 2861988
Score = 135 bits (341), Expect = 4e-30, Method: Composition-based stats.
Identities = 71/156 (45%), Positives = 96/156 (61%), Gaps = 1/156 (0%)
Frame = -3
Query: 1 HGSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGV 60
HGSILGDKTRME+L N+YIRPS SG LGGV + E + + EAA FD + +ETVGV
Sbjct: 687907 HGSILGDKTRMEELVKDQNAYIRPSASGETLGGVARKTRETITLCEAAGFDTIIIETVGV 687728
Query: 61 GQSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAY 120
GQSET + D +LL +GDELQGIK+GI+E+AD +V+ K DG A + +
Sbjct: 687727 GQSETAVHSMVDFFLLLKISGAGDELQGIKRGIMEMADAIVINKADGDNIRKANLAKTEF 687548
Query: 121 TRAV-MYTEAKQGFEKPVLAVSAEERTNVPELWEAM 155
RA+ ++ K G+ SA +PE+W+ +
Sbjct: 687547 NRALHLFPAKKSGWIPTTSTCSAITHEGIPEVWKTI 687440
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 31/105 (29%), Positives = 61/105 (58%)
Frame = +2
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
G++LGD+ RM + +P Y+R + ++ E +++ +AA +D++ +ET G+G
Sbjct: 2194262 GALLGDRIRMNAIN-NPRVYMRSLATRQSNLALSKYVAEAIQVLKAAKYDIIILETSGIG 2194438
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKND 106
QS+T+ D +D+ + ++ P G Q K +++ AD+V + K D
Sbjct: 2194439 QSDTEIMDHSDVSLYVMTPEFGAATQLEKIDMLDFADLVALNKFD 2194573
>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence
Length = 2648638
Score = 135 bits (341), Expect = 4e-30, Method: Composition-based stats.
Identities = 71/160 (44%), Positives = 98/160 (61%)
Frame = +3
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSI+GDKTRM +L +H ++IRPSPSGG LGGV R E + + EAA +DV+ +ETVGVG
Sbjct: 1071246 GSIMGDKTRMPRLTVHEGAFIRPSPSGGTLGGVARRTRETITLCEAAGYDVLLIETVGVG 1071425
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSETQ +TD+ +LL +GDELQGIK+GI+E+AD+ VV K D + + + +
Sbjct: 1071426 QSETQVAGMTDLFVLLTLHGAGDELQGIKRGIMELADLCVVNKADTNPRAAIRAQTELRS 1071605
Query: 122 RAVMYTEAKQGFEKPVLAVSAEERTNVPELWEAMMKMWNT 161
+ T + L SA +PELW + + T
Sbjct: 1071606 ALTLLTPHDAPWRPAALRASAVTGEGIPELWAKVQEYAET 1071725
Score = 86.7 bits (213), Expect = 2e-15, Method: Composition-based stats.
Identities = 48/120 (40%), Positives = 71/120 (59%), Gaps = 6/120 (5%)
Frame = -2
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
G+ILGD+ RM + ++R S G LGG++++ VL + + A FD V +ETVGVG
Sbjct: 1775772 GAILGDRIRMLRHHADEGVFVRSLASRGALGGLSAQTLPVLALLDGAGFDWVILETVGVG 1775593
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKND------GSRKLLAQQ 115
QSE + D +L++ PA GD +Q K GI+E+AD++ V K D R+L+A Q
Sbjct: 1775592 QSEVDIAAVCDHTLLVLTPAGGDGIQAFKAGIMEIADVIAVNKADLPGAERTVRELMAAQ 1775413
>gb|CP000316.1| Polaromonas sp. JS666, complete genome
Length = 5200264
Score = 135 bits (341), Expect = 4e-30, Method: Composition-based stats.
Identities = 79/180 (43%), Positives = 109/180 (60%), Gaps = 15/180 (8%)
Frame = +1
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRMEKL +H +YIRPSPS G LGGV + E + + EAA +DVV VETVGVG
Sbjct: 2256655 GSILGDKTRMEKLSVHERAYIRPSPSSGTLGGVAEKTREAMLVCEAAGYDVVIVETVGVG 2256834
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKN--DGSRKLLAQQTISA 119
QSET ++TDM +L+ P +GD+LQ IKKG++E+AD+V++ K D + A+ I++
Sbjct: 2256835 QSETAVANMTDMFVLMQLPNAGDDLQAIKKGVMELADLVIINKADLDADAAMRAEAQITS 2257014
Query: 120 YTR-------AVMYTEAKQG--FEK----PVLAVSAEERTNVPELWEAMMKMWNTRVESG 166
R A+ +A Q F+K V+ +SA V W A+ + N + G
Sbjct: 2257015 AMRLFGLVNNAMGSAQAAQAGEFDKHWHPRVIQLSALHNKGVDAFWAAVTQFRNLQTSDG 2257194
Score = 40.0 bits (92), Expect = 0.24, Method: Composition-based stats.
Identities = 40/154 (25%), Positives = 66/154 (42%), Gaps = 37/154 (24%)
Frame = +1
Query: 2 GSILGDKTRMEKLGIHPNSYI---------------RPSPSGGH----LGGVTSRAW--- 39
G++LGD+ RM I+P + R +PSGG +G V +R +
Sbjct: 4257427 GALLGDRIRMN--AINPWTVASSQAQAAGPALPDGRRAAPSGGSEPHAVGSVGARVFMRS 4257600
Query: 40 ---------------EVLEIFEAANFDVVFVETVGVGQSETQCKDLTDMMILLVPPASGD 84
EV+ +AA FD++ VET G+GQ + D+ + ++ P G
Sbjct: 4257601 LATREFGSEISKALPEVIAACKAAGFDLIVVETSGIGQGDAAIVPHVDVPMYVMTPEFGA 4257780
Query: 85 ELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTIS 118
Q K +++ A+ V + K D L A + +S
Sbjct: 4257781 ASQLEKIDMLDFAEFVAINKFDRKGSLDALRDVS 4257882
>gb|CP000377.1| Silicibacter sp. TM1040, complete genome
Length = 3200938
Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats.
Identities = 81/169 (47%), Positives = 110/169 (65%), Gaps = 4/169 (2%)
Frame = +3
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRME+L ++IRPSPS HLGGV R + + + EAA FDVV +ETVGVG
Sbjct: 718683 GSILGDKTRMERLSRERAAFIRPSPSQSHLGGVARRTRDAVALCEAAGFDVVLIETVGVG 718862
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSET +L+D+ +LL+ PA GDELQG+K+GI+E+ADM+++ K DG K A +T + Y
Sbjct: 718863 QSETVVSELSDLFLLLLAPAGGDELQGVKRGIMEIADMILINKADGDLKATATRTCADYA 719042
Query: 122 RAVMYTEAK----QGFEKPVLAVSAEERTNVPELWEAMMKMWNTRVESG 166
A+ + +GF K L VSA E + + WE + + R E+G
Sbjct: 719043 GALRLLRKRPQDPEGFPK-ALTVSAIEAAGLDQAWEEIQALAGWRRENG 719186
>gb|CP001071.1| Akkermansia muciniphila ATCC BAA-835, complete genome
Length = 2664102
Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats.
Identities = 72/166 (43%), Positives = 106/166 (63%), Gaps = 1/166 (0%)
Frame = +2
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSI+GDKTRME+L N++IRPSPSGG LGGV + E + EAA FD++ +ETVGVG
Sbjct: 2453972 GSIMGDKTRMEELSGEENAFIRPSPSGGSLGGVARKTRETMIACEAAGFDIILIETVGVG 2454151
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSET + + D+ +LL+ +GD+LQGIK+GI+E+AD++VVTK+DG + A
Sbjct: 2454152 QSETTVRSMVDIFMLLLITGAGDDLQGIKRGIMELADILVVTKDDGDNRQRAAAHCQELK 2454331
Query: 122 RAVMYTEAKQ-GFEKPVLAVSAEERTNVPELWEAMMKMWNTRVESG 166
+ Y ++ G+ VL S+ E + + E + + ++ ESG
Sbjct: 2454332 MVLHYLQSPTPGWTPSVLTCSSLEGRGLDTIEETLFRFRDSMKESG 2454469
>gb|BC079139.1| Rattus norvegicus cDNA clone IMAGE:7127801, with apparent retained
intron
Length = 2498
Score = 135 bits (340), Expect = 5e-30, Method: Composition-based stats.
Identities = 66/135 (48%), Positives = 92/135 (68%)
Frame = +3
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GS+LGDKTRM +L N+YIRPSP+ G LGGVT E + + E +D++ +ETVGVG
Sbjct: 897 GSLLGDKTRMTELSRDMNAYIRPSPTSGTLGGVTRTTNEAIVLCEGGGYDIILIETVGVG 1076
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSE D+ DM +LL+PPA GDELQGIK+GI+E+AD+VV+TK+DG + A++ + Y
Sbjct: 1077 QSEFAVADMVDMFVLLLPPAGGDELQGIKRGIIEMADLVVITKSDGDLVVPARRIQAEYV 1256
Query: 122 RAVMYTEAKQGFEKP 136
A+ + +P
Sbjct: 1257 SALKLLRRRSEVWRP 1301
>emb|AM238663.1| Streptomyces ambofaciens ATCC 23877 left chromosomal arm
Length = 1544032
Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats.
Identities = 71/155 (45%), Positives = 97/155 (62%), Gaps = 1/155 (0%)
Frame = +1
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRME+L + P +++RPSP+ G LGGV E + + EAA +DVV VETVGVG
Sbjct: 599848 GSILGDKTRMERLAVDPAAFVRPSPTAGTLGGVAKATRESIVVMEAAGYDVVLVETVGVG 600027
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSET D+ D +LL +GD+LQGIKKG++E+AD++ V K DG + A+
Sbjct: 600028 QSETAVADMVDSFLLLTLARTGDQLQGIKKGVLELADVIAVNKADGPHERDARAAARELA 600207
Query: 122 RAVMYTEAKQGF-EKPVLAVSAEERTNVPELWEAM 155
A+ + F PVL+ SA E + +WE +
Sbjct: 600208 GALRLMHGQDAFWTPPVLSCSAREAAGLDAVWERL 600312
>gb|CP000685.1| Flavobacterium johnsoniae UW101, complete genome
Length = 6096872
Score = 135 bits (339), Expect = 6e-30, Method: Composition-based stats.
Identities = 73/167 (43%), Positives = 101/167 (60%), Gaps = 1/167 (0%)
Frame = +1
Query: 1 HGSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGV 60
HGSILGDKTRME+L N++IRPS SG +LGGV + E + + EAA FD + +ETVGV
Sbjct: 6059740 HGSILGDKTRMEELVKDENAFIRPSASGENLGGVARKTRETIILCEAAGFDTIIIETVGV 6059919
Query: 61 GQSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAY 120
GQSET + D +LL +GDELQGIK+GI+E+AD +V+ K DG A Q +
Sbjct: 6059920 GQSETAVHSMVDFFLLLKISGAGDELQGIKRGIMEMADAIVINKADGDNIKKANQAKLEF 6060099
Query: 121 TRAV-MYTEAKQGFEKPVLAVSAEERTNVPELWEAMMKMWNTRVESG 166
RA+ ++ K ++ V SA + + E+W + + ESG
Sbjct: 6060100 NRALHLFPPKKSSWQPKVTTCSAITKDGISEIWNTISDYFEMTKESG 6060240
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 41/157 (26%), Positives = 80/157 (50%), Gaps = 2/157 (1%)
Frame = +1
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
G++LGD+ RM + +P Y+R + ++ E +++ +AA +D++ +ET G+G
Sbjct: 2801155 GALLGDRIRMNAIN-NPRVYMRSLATRQSNLALSKYVAEAIQVLKAAKYDLIILETSGIG 2801331
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QS+T+ D +D+ + ++ P G Q K +++ AD+V + K D L A + +
Sbjct: 2801332 QSDTEIMDHSDVSLYVMTPEFGAATQLEKIDMLDFADLVALNKFDKRGALDALRDVKKQY 2801511
Query: 122 RAVMYTEAKQGFEKPVLAVSAEERTN--VPELWEAMM 156
+ K E PV A + + + L++A+M
Sbjct: 2801512 QRNHNLWDKNPDEMPVFGTIASQFNDPGMNTLYKAIM 2801622
>emb|CU466930.1| Candidatus Cloacamonas acidaminovorans provisional genome sequence from
WWE1 candidate division, obtained from Evry mesophilic
anaerobic digester (France)
Length = 2246820
Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats.
Identities = 72/158 (45%), Positives = 103/158 (65%), Gaps = 6/158 (3%)
Frame = +1
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRME L +P S+IRPSPS G LGGV + E + + E+A +DV+ +ETVGVG
Sbjct: 926842 GSILGDKTRMELLSRNPKSFIRPSPSAGILGGVARKTRETIILCESAGYDVILIETVGVG 927021
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDG---SRKLLAQ---Q 115
QSET + + D +L+ +GDELQGIK+GI+E+AD++V+ K DG +R LA+ Q
Sbjct: 927022 QSETTVRSMVDFFLLMQIAGAGDELQGIKRGIIELADLIVINKADGDNIARTELAKRELQ 927201
Query: 116 TISAYTRAVMYTEAKQGFEKPVLAVSAEERTNVPELWE 153
+ Y R + +G++ V+ SA + + E+WE
Sbjct: 927202 NVLHYIR-----NSTEGWQTKVVTSSALNKIGLKEIWE 927300
>gb|CP000034.1| Shigella dysenteriae Sd197, complete genome
Length = 4369232
Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats.
Identities = 75/166 (45%), Positives = 97/166 (58%), Gaps = 1/166 (0%)
Frame = -2
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRM L ++IRP PS GHLGG RA E++ + EAA +DVV VETVGVG
Sbjct: 2929351 GSILGDKTRMNDLARAETAFIRPVPSSGHLGGACQRARELMLLCEAAGYDVVIVETVGVG 2929172
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSET+ + D I L GD+LQGIKKG++EVAD++V+ K+DG Y
Sbjct: 2929171 QSETEVARMVDCFISLQIAGGGDDLQGIKKGLMEVADLIVINKDDGDHHTNVAIARHMYE 2928992
Query: 122 RAVMYTEAKQGFEKP-VLAVSAEERTNVPELWEAMMKMWNTRVESG 166
A+ K +P VL SA E+ + E+W A++ SG
Sbjct: 2928991 SALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKTALTASG 2928854
>gb|CP000113.1| Myxococcus xanthus DK 1622, complete genome
Length = 9139763
Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats.
Identities = 78/154 (50%), Positives = 100/154 (64%)
Frame = -3
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRM +L +YIRPSPS G LGGV + E L + EAA FDVV VETVGVG
Sbjct: 2623665 GSILGDKTRMARLSREEAAYIRPSPSSGTLGGVARKTRETLLLCEAAGFDVVLVETVGVG 2623486
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSET DL D ++L+ +GDELQGIK+GI+EVADM+ + K DG K A++ S
Sbjct: 2623485 QSETVVADLVDFYLVLMLAGAGDELQGIKRGILEVADMLAINKADGDNKPRAERARSEL- 2623309
Query: 122 RAVMYTEAKQGFEKPVLAVSAEERTNVPELWEAM 155
RA ++ + G E + SA E T + +LW ++
Sbjct: 2623308 RAALHL-MRPGAEPEITTCSALEGTGIEKLWTSV 2623210
Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 31/105 (29%), Positives = 60/105 (57%)
Frame = -1
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
G++LGD+ RM + +P Y+R + ++ + +EI +AA FD++ VET G+G
Sbjct: 2622149 GALLGDRIRMNAID-NPRVYMRSMATRQSNLALSKHVGDSIEICKAAGFDLIVVETSGIG 2621973
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKND 106
QS+T+ + +D+ + ++ G Q K +++ AD++ + K D
Sbjct: 2621972 QSDTEITEHSDVALYVMTAEYGAATQLEKIDMLDFADVIAINKFD 2621838
>gb|EU062902.1| Uncultured bacterium clone LM0ACA2ZE01FM1 genomic sequence
Length = 561
Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats.
Identities = 72/151 (47%), Positives = 96/151 (63%), Gaps = 1/151 (0%)
Frame = +3
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRMEKL +HP S+IRPSPS G LGGV + E + + EAA FD +FVETVGVG
Sbjct: 108 GSILGDKTRMEKLSVHPKSFIRPSPSAGSLGGVARKTRETIVLCEAAGFDKIFVETVGVG 287
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSET + D +L+ +GDELQGIK+GI+E+AD +V+ K DG A+ + +
Sbjct: 288 QSETAVHSMVDFFLLIQLAGTGDELQGIKRGIMEMADGIVINKADGDNLERARLAATQFR 467
Query: 122 RAV-MYTEAKQGFEKPVLAVSAEERTNVPEL 151
A+ ++ + G+ VL S V E+
Sbjct: 468 NALHLFPAPESGWTPQVLTYSGFYNLGVKEV 560
>ref|XM_420429.2| PREDICTED: Gallus gallus similar to methylmalonic aciduria type A
(LOC422464), mRNA
Length = 1312
Score = 134 bits (338), Expect = 8e-30, Method: Composition-based stats.
Identities = 69/161 (42%), Positives = 101/161 (62%), Gaps = 1/161 (0%)
Frame = +1
Query: 7 DKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVGQSETQ 66
DKTRM +L N+YIRPSP+ G LGGVT E + + E ++VV VETVGVGQSE
Sbjct: 559 DKTRMTELSRDMNAYIRPSPTRGTLGGVTRTTNEAILLCEGGGYNVVLVETVGVGQSEFA 738
Query: 67 CKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYTRAVMY 126
D+ DM IL++PPA GDELQGIK+GI+E+AD+V + K DG + A++ + Y A+
Sbjct: 739 VADMVDMFILVLPPAGGDELQGIKRGIIEMADLVAINKADGDLIVPARRIQAEYVSAMKL 918
Query: 127 TEAKQGFEKP-VLAVSAEERTNVPELWEAMMKMWNTRVESG 166
+ +P V+ +SA+ + ++W+ M + + + SG
Sbjct: 919 LRKRSKVWRPKVMRISAKTGEGISDMWDKMTEFRDLMLTSG 1041
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
Length = 5513844
Score = 134 bits (338), Expect = 8e-30, Method: Composition-based stats.
Identities = 73/156 (46%), Positives = 100/156 (64%), Gaps = 1/156 (0%)
Frame = -3
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRM +L ++IRPSP+ G LGGV ++ E + + EAA FDVV VETVG+G
Sbjct: 1908721 GSILGDKTRMAQLSSTDAAFIRPSPAAGTLGGVAAKTREAMLLCEAAGFDVVLVETVGIG 1908542
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSET D+TD + L+ P +GDELQGIKKG+VE+ADM+ + K DG A + Y
Sbjct: 1908541 QSETAVCDMTDFFLALMLPGAGDELQGIKKGLVELADMIAINKADGDNLKRANLAAAEYR 1908362
Query: 122 RAV-MYTEAKQGFEKPVLAVSAEERTNVPELWEAMM 156
A+ + T ++ PV+ SA + ELW+ ++
Sbjct: 1908361 GALHILTPRSAHWQVPVVTYSALAGLGIAELWQQVV 1908254
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
Length = 6021225
Score = 134 bits (338), Expect = 8e-30, Method: Composition-based stats.
Identities = 70/166 (42%), Positives = 100/166 (60%), Gaps = 1/166 (0%)
Frame = -3
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRM +L + PN++IRPSP+ G LGGV E + + EAA +DV+ VETVGVG
Sbjct: 3673630 GSILGDKTRMARLSVEPNAFIRPSPTAGTLGGVAKATRETIVLLEAAGYDVILVETVGVG 3673451
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSE ++ D+ L +GD+LQGIKKG++E+A++V V K DG + A+
Sbjct: 3673450 QSEVTVANMVDVFCFLTLARTGDQLQGIKKGVLELAEIVAVNKADGKHAIEAKSAARELA 3673271
Query: 122 RAVMYTEAKQG-FEKPVLAVSAEERTNVPELWEAMMKMWNTRVESG 166
A+ + + PVL +S E T + E WE ++K ++G
Sbjct: 3673270 GALRLIHPRDALWRPPVLTMSGLEGTGLDEFWETVLKHRRVLTDAG 3673133
>dbj|AP009493.1| Streptomyces griseus subsp. griseus NBRC 13350 DNA, complete genome
Length = 8545929
Score = 134 bits (338), Expect = 8e-30, Method: Composition-based stats.
Identities = 71/155 (45%), Positives = 97/155 (62%), Gaps = 1/155 (0%)
Frame = -1
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRME+L + P +++RPSP+ G LGGV E + + EAA +DVV VETVGVG
Sbjct: 8066697 GSILGDKTRMERLAVDPAAFVRPSPTAGTLGGVAKATRESIVVMEAAGYDVVLVETVGVG 8066518
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSET ++ D +LL +GD+LQGIKKG++E+AD + V K DG + A+
Sbjct: 8066517 QSETAVANMVDTFLLLTLARTGDQLQGIKKGVLELADAIAVNKADGPHERDARSAARELA 8066338
Query: 122 RAV-MYTEAKQGFEKPVLAVSAEERTNVPELWEAM 155
A+ + A + PVL SA E + + LWE +
Sbjct: 8066337 GALRLMHPADAAWTPPVLTCSARESSGLDTLWERL 8066233
Score = 87.8 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 46/105 (43%), Positives = 63/105 (60%)
Frame = -2
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
G++LGD+ RM P YIR + GHLGG+ A + + + +AA DVV VETVGVG
Sbjct: 2534984 GALLGDRIRMADHVSDPGVYIRSMATRGHLGGLAWSAPQAIRVLDAAGCDVVLVETVGVG 2534805
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKND 106
QSE + D ++L+ P GD +Q K GI+E+ D+ VV K D
Sbjct: 2534804 QSEVEIASQADTSVVLLAPGMGDGIQAAKAGILEIGDVYVVNKAD 2534670
>dbj|AP010656.1| Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2 DNA,
complete genome
Length = 1114206
Score = 134 bits (337), Expect = 9e-30, Method: Composition-based stats.
Identities = 71/157 (45%), Positives = 98/157 (62%), Gaps = 1/157 (0%)
Frame = -2
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRME++ N +IRPSPS G LGGV + E + + EAA FD +FVETVGVG
Sbjct: 428450 GSILGDKTRMEEISRETNVFIRPSPSAGSLGGVARKTRETIILCEAAGFDTIFVETVGVG 428271
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSET + D +L+ +GDELQGIK+GI+E+AD VVV K DG+ A + Y
Sbjct: 428270 QSETAVHSMVDFFLLIQVAGTGDELQGIKRGIMEMADGVVVNKADGNNIEKANLAAAQYR 428091
Query: 122 RAV-MYTEAKQGFEKPVLAVSAEERTNVPELWEAMMK 157
A+ ++ G+ V+ S +T + E+W+ + +
Sbjct: 428090 NALHLFPLPLSGWIPKVMTYSGHYKTGITEIWDTIYR 427980
>emb|CU358658.1| Aphanomyces euteiches cDNA
Length = 862
Score = 134 bits (337), Expect = 9e-30, Method: Composition-based stats.
Identities = 70/141 (49%), Positives = 93/141 (65%)
Frame = +3
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRM L P++++RPSP+ G LGGV E++ + EA +D+V VE+VG+G
Sbjct: 438 GSILGDKTRMTHLANSPHAFVRPSPTRGTLGGVAQHTNEIVLLCEACGYDIVLVESVGLG 617
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSE D DM++LLVPPA GDELQG KKGI+E+AD+VVV K DG K A+ T Y
Sbjct: 618 QSEIIIDDTVDMVMLLVPPAGGDELQGSKKGIMEIADVVVVNKADGELKSAAKHTAVDYM 797
Query: 122 RAVMYTEAKQGFEKPVLAVSA 142
A+ + K KP + + +
Sbjct: 798 HALQLSRRKDPSWKPTVKMCS 860
>emb|AM746676.1| Sorangium cellulosum 'So ce 56' complete genome
Length = 13033779
Score = 134 bits (337), Expect = 9e-30, Method: Composition-based stats.
Identities = 71/157 (45%), Positives = 99/157 (63%), Gaps = 1/157 (0%)
Frame = +1
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRM +L P ++IRPSPSGG LGGV + + + EAA + + VETVGVG
Sbjct: 3686719 GSILGDKTRMPRLASDPRAFIRPSPSGGSLGGVARATRQAILLCEAAGYRNILVETVGVG 3686898
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSE D+TD +LL+ P +GDELQG+K+GI+E+ D+V++ K DG A + Y
Sbjct: 3686899 QSEVAVADMTDCFLLLMLPGAGDELQGVKRGIMELVDLVIINKADGGNVDRAARARRDYE 3687078
Query: 122 RAV-MYTEAKQGFEKPVLAVSAEERTNVPELWEAMMK 157
A+ ++ A G+ V SA+E V E WE +++
Sbjct: 3687079 SALHLFPPAPHGWAPVVSVCSAQEGRGVREAWEIVLR 3687189
Score = 55.1 bits (131), Expect = 8e-06, Method: Composition-based stats.
Identities = 43/105 (40%), Positives = 63/105 (60%)
Frame = -3
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
G+ILGD+ RM+ P+ +IR + G LGG++ +V+ + +A DVV VETVGVG
Sbjct: 5452528 GAILGDRIRMQAHFGDPDVFIRSLATRGALGGLSRSVVDVVRVLDAWGADVVVVETVGVG 5452349
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKND 106
Q E + + +++ P GDE+Q IK GI+E AD+ V K D
Sbjct: 5452348 QDELEITRMAHTTLVVAAPGMGDEVQAIKAGILECADVFAVNKAD 5452214
>emb|AM260198.1| Polyangium cellulosum epi gene, mcm gene and meaB gene, strain So
ce56
Length = 4154
Score = 134 bits (337), Expect = 9e-30, Method: Composition-based stats.
Identities = 71/157 (45%), Positives = 99/157 (63%), Gaps = 1/157 (0%)
Frame = +3
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRM +L P ++IRPSPSGG LGGV + + + EAA + + VETVGVG
Sbjct: 3453 GSILGDKTRMPRLASDPRAFIRPSPSGGSLGGVARATRQAILLCEAAGYRNILVETVGVG 3632
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSE D+TD +LL+ P +GDELQG+K+GI+E+ D+V++ K DG A + Y
Sbjct: 3633 QSEVAVADMTDCFLLLMLPGAGDELQGVKRGIMELVDLVIINKADGGNVDRAARARRDYE 3812
Query: 122 RAV-MYTEAKQGFEKPVLAVSAEERTNVPELWEAMMK 157
A+ ++ A G+ V SA+E V E WE +++
Sbjct: 3813 SALHLFPPAPHGWAPVVSVCSAQEGRGVREAWEIVLR 3923
>dbj|BA000007.2| Escherichia coli O157:H7 str. Sakai DNA, complete genome
Length = 5498450
Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats.
Identities = 75/166 (45%), Positives = 98/166 (59%), Gaps = 1/166 (0%)
Frame = +3
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRM L ++IRP PS GHLGG + RA E++ + EAA +DVV VETVGVG
Sbjct: 3800757 GSILGDKTRMNDLARAEAAFIRPVPSSGHLGGASQRARELMLLCEAAGYDVVIVETVGVG 3800936
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSET+ + D I L GD+LQGIKKG++EVAD++V+ K+DG Y
Sbjct: 3800937 QSETEVARMVDCFISLQIAGGGDDLQGIKKGLMEVADLIVINKDDGDNHTNVAIARHMYE 3801116
Query: 122 RAVMYTEAKQGFEKP-VLAVSAEERTNVPELWEAMMKMWNTRVESG 166
A+ K +P VL SA E+ + E+W A++ SG
Sbjct: 3801117 SALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKTALTASG 3801254
>gb|CP001164.1| Escherichia coli O157:H7 str. EC4115, complete genome
Length = 5572075
Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats.
Identities = 75/166 (45%), Positives = 98/166 (59%), Gaps = 1/166 (0%)
Frame = +3
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRM L ++IRP PS GHLGG + RA E++ + EAA +DVV VETVGVG
Sbjct: 3905154 GSILGDKTRMNDLARAEAAFIRPVPSSGHLGGASQRARELMLLCEAAGYDVVIVETVGVG 3905333
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSET+ + D I L GD+LQGIKKG++EVAD++V+ K+DG Y
Sbjct: 3905334 QSETEVARMVDCFISLQIAGGGDDLQGIKKGLMEVADLIVINKDDGDNHTNVAIARHMYE 3905513
Query: 122 RAVMYTEAKQGFEKP-VLAVSAEERTNVPELWEAMMKMWNTRVESG 166
A+ K +P VL SA E+ + E+W A++ SG
Sbjct: 3905514 SALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKTALTASG 3905651
>gb|AE005174.2| Escherichia coli O157:H7 EDL933, complete genome
Length = 5528445
Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats.
Identities = 75/166 (45%), Positives = 98/166 (59%), Gaps = 1/166 (0%)
Frame = +3
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRM L ++IRP PS GHLGG + RA E++ + EAA +DVV VETVGVG
Sbjct: 3868065 GSILGDKTRMNDLARAEAAFIRPVPSSGHLGGASQRARELMLLCEAAGYDVVIVETVGVG 3868244
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSET+ + D I L GD+LQGIKKG++EVAD++V+ K+DG Y
Sbjct: 3868245 QSETEVARMVDCFISLQIAGGGDDLQGIKKGLMEVADLIVINKDDGDNHTNVAIARHMYE 3868424
Query: 122 RAVMYTEAKQGFEKP-VLAVSAEERTNVPELWEAMMKMWNTRVESG 166
A+ K +P VL SA E+ + E+W A++ SG
Sbjct: 3868425 SALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKTALTASG 3868562
>gb|CP000661.1| Rhodobacter sphaeroides ATCC 17025, complete genome
Length = 3217726
Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats.
Identities = 80/169 (47%), Positives = 108/169 (63%), Gaps = 4/169 (2%)
Frame = +3
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRME+L P ++IRPSPS HLGGV R E + + EAA FDV+ +ETVGVG
Sbjct: 3192558 GSILGDKTRMERLSRDPMAFIRPSPSQSHLGGVARRTREAVALCEAAGFDVILIETVGVG 3192737
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSET L D+ +LL+ PA GDELQG+K+GI+E+AD+++V K DG + A +T++ Y
Sbjct: 3192738 QSETVVAQLCDLFLLLLAPAGGDELQGVKRGIMEMADIILVNKADGDLRPAAMRTVADYA 3192917
Query: 122 RAVMYTEAK----QGFEKPVLAVSAEERTNVPELWEAMMKMWNTRVESG 166
A+ + +GF K + VSA E + W M + R E+G
Sbjct: 3192918 GALRLLRRRPQDPEGFPK-AMPVSAIEEQGLTHAWAEMQALVGWRRETG 3193061
>emb|CU928145.2| Escherichia coli 55989 chromosome, complete genome
Length = 5154862
Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats.
Identities = 75/166 (45%), Positives = 98/166 (59%), Gaps = 1/166 (0%)
Frame = +1
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRM L ++IRP PS GHLGG + RA E++ + EAA +DVV VETVGVG
Sbjct: 3288742 GSILGDKTRMNDLARAEAAFIRPVPSSGHLGGASQRARELMLLCEAAGYDVVIVETVGVG 3288921
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSET+ + D I L GD+LQGIKKG++EVAD++V+ K+DG Y
Sbjct: 3288922 QSETEVARMVDCFISLQIAGGGDDLQGIKKGLMEVADLIVINKDDGDNHTNVAIARHMYE 3289101
Query: 122 RAVMYTEAKQGFEKP-VLAVSAEERTNVPELWEAMMKMWNTRVESG 166
A+ K +P VL SA E+ + E+W A++ SG
Sbjct: 3289102 SALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKTALTASG 3289239
>gb|CP000948.1| Escherichia coli str. K12 substr. DH10B, complete genome
Length = 4686137
Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats.
Identities = 75/166 (45%), Positives = 98/166 (59%), Gaps = 1/166 (0%)
Frame = +1
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRM L ++IRP PS GHLGG + RA E++ + EAA +DVV VETVGVG
Sbjct: 3155173 GSILGDKTRMNDLARAEAAFIRPVPSSGHLGGASQRARELMLLCEAAGYDVVIVETVGVG 3155352
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSET+ + D I L GD+LQGIKKG++EVAD++V+ K+DG Y
Sbjct: 3155353 QSETEVARMVDCFISLQIAGGGDDLQGIKKGLMEVADLIVINKDDGDNHTNVAIARHMYE 3155532
Query: 122 RAVMYTEAKQGFEKP-VLAVSAEERTNVPELWEAMMKMWNTRVESG 166
A+ K +P VL SA E+ + E+W A++ SG
Sbjct: 3155533 SALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKTALTASG 3155670
>gb|CP000802.1| Escherichia coli HS, complete genome
Length = 4643538
Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats.
Identities = 75/166 (45%), Positives = 98/166 (59%), Gaps = 1/166 (0%)
Frame = +3
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRM L ++IRP PS GHLGG + RA E++ + EAA +DVV VETVGVG
Sbjct: 3090792 GSILGDKTRMNDLARAEAAFIRPVPSSGHLGGASQRARELMLLCEAAGYDVVIVETVGVG 3090971
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSET+ + D I L GD+LQGIKKG++EVAD++V+ K+DG Y
Sbjct: 3090972 QSETEVARMVDCFISLQIAGGGDDLQGIKKGLMEVADLIVINKDDGDNHTNVAIARHMYE 3091151
Query: 122 RAVMYTEAKQGFEKP-VLAVSAEERTNVPELWEAMMKMWNTRVESG 166
A+ K +P VL SA E+ + E+W A++ SG
Sbjct: 3091152 SALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKTALTASG 3091289
>dbj|AP009048.1| Escherichia coli str. K12 substr. W3110 DNA, complete genome
Length = 4646332
Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats.
Identities = 75/166 (45%), Positives = 98/166 (59%), Gaps = 1/166 (0%)
Frame = +2
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRM L ++IRP PS GHLGG + RA E++ + EAA +DVV VETVGVG
Sbjct: 3061937 GSILGDKTRMNDLARAEAAFIRPVPSSGHLGGASQRARELMLLCEAAGYDVVIVETVGVG 3062116
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSET+ + D I L GD+LQGIKKG++EVAD++V+ K+DG Y
Sbjct: 3062117 QSETEVARMVDCFISLQIAGGGDDLQGIKKGLMEVADLIVINKDDGDNHTNVAIARHMYE 3062296
Query: 122 RAVMYTEAKQGFEKP-VLAVSAEERTNVPELWEAMMKMWNTRVESG 166
A+ K +P VL SA E+ + E+W A++ SG
Sbjct: 3062297 SALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKTALTASG 3062434
>gb|U00096.2| Escherichia coli str. K-12 substr. MG1655, complete genome
Length = 4639675
Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats.
Identities = 75/166 (45%), Positives = 98/166 (59%), Gaps = 1/166 (0%)
Frame = +1
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRM L ++IRP PS GHLGG + RA E++ + EAA +DVV VETVGVG
Sbjct: 3061303 GSILGDKTRMNDLARAEAAFIRPVPSSGHLGGASQRARELMLLCEAAGYDVVIVETVGVG 3061482
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSET+ + D I L GD+LQGIKKG++EVAD++V+ K+DG Y
Sbjct: 3061483 QSETEVARMVDCFISLQIAGGGDDLQGIKKGLMEVADLIVINKDDGDNHTNVAIARHMYE 3061662
Query: 122 RAVMYTEAKQGFEKP-VLAVSAEERTNVPELWEAMMKMWNTRVESG 166
A+ K +P VL SA E+ + E+W A++ SG
Sbjct: 3061663 SALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKTALTASG 3061800
>gb|U28377.1|ECU28377 Escherichia coli K-12 genome; approximately 65 to 68 minutes
Length = 141744
Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats.
Identities = 75/166 (45%), Positives = 98/166 (59%), Gaps = 1/166 (0%)
Frame = +2
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRM L ++IRP PS GHLGG + RA E++ + EAA +DVV VETVGVG
Sbjct: 17672 GSILGDKTRMNDLARAEAAFIRPVPSSGHLGGASQRARELMLLCEAAGYDVVIVETVGVG 17851
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSET+ + D I L GD+LQGIKKG++EVAD++V+ K+DG Y
Sbjct: 17852 QSETEVARMVDCFISLQIAGGGDDLQGIKKGLMEVADLIVINKDDGDNHTNVAIARHMYE 18031
Query: 122 RAVMYTEAKQGFEKP-VLAVSAEERTNVPELWEAMMKMWNTRVESG 166
A+ K +P VL SA E+ + E+W A++ SG
Sbjct: 18032 SALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKTALTASG 18169
>emb|CU928164.2| Escherichia coli IAI39 chromosome, complete genome
Length = 5132068
Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats.
Identities = 75/166 (45%), Positives = 98/166 (59%), Gaps = 1/166 (0%)
Frame = +1
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRM L ++IRP PS GHLGG + RA E++ + EAA +DVV VETVGVG
Sbjct: 3489319 GSILGDKTRMNDLARAEAAFIRPVPSSGHLGGASQRARELMLLCEAAGYDVVIVETVGVG 3489498
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSET+ + D I L GD+LQGIKKG++EVAD++V+ K+DG Y
Sbjct: 3489499 QSETEVARMVDCFISLQIAGGGDDLQGIKKGLMEVADLIVINKDDGDNHTNVAIAQHMYE 3489678
Query: 122 RAVMYTEAKQGFEKP-VLAVSAEERTNVPELWEAMMKMWNTRVESG 166
A+ K +P VL SA E+ + E+W A++ SG
Sbjct: 3489679 SALHILRHKYDEWQPRVLTCSALEKRGINEIWHAIIDFKTALTASG 3489816
>gb|CP000880.1| Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete genome
Length = 4600800
Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats.
Identities = 74/166 (44%), Positives = 101/166 (60%), Gaps = 1/166 (0%)
Frame = -3
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRM L ++IRP PSGGHLGG RA E++ + EAA +D+V VETVGVG
Sbjct: 4487791 GSILGDKTRMTALSRSDAAFIRPVPSGGHLGGGCLRARELILLCEAAGYDIVIVETVGVG 4487612
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSET+ ++ D I L GD+LQGIKKGI+E+AD++V+ K+DG + T Y
Sbjct: 4487611 QSETEVANMVDCFIALQIAGGGDDLQGIKKGIMEMADLIVINKDDGDNRGNVAITRHMYE 4487432
Query: 122 RAVMYTEAKQGFEKP-VLAVSAEERTNVPELWEAMMKMWNTRVESG 166
A+ K +P VL SA ++ + ++W+ + T SG
Sbjct: 4487431 SALRILRRKYAEWQPQVLTCSALQKRGIDQVWQTLCDFRATLAASG 4487294
>gb|CP000970.1| Escherichia coli SMS-3-5, complete genome
Length = 5068389
Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats.
Identities = 75/166 (45%), Positives = 98/166 (59%), Gaps = 1/166 (0%)
Frame = +2
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRM L ++IRP PS GHLGG + RA E++ + EAA +DVV VETVGVG
Sbjct: 3144047 GSILGDKTRMNDLARAEAAFIRPVPSSGHLGGASQRARELMLLCEAAGYDVVIVETVGVG 3144226
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSET+ + D I L GD+LQGIKKG++EVAD++V+ K+DG Y
Sbjct: 3144227 QSETEVARMVDCFISLQIAGGGDDLQGIKKGLMEVADLIVINKDDGDNHTNVAIARHMYE 3144406
Query: 122 RAVMYTEAKQGFEKP-VLAVSAEERTNVPELWEAMMKMWNTRVESG 166
A+ K +P VL SA E+ + E+W A++ SG
Sbjct: 3144407 SALHILRHKYDEWQPRVLTCSALEKRGINEIWHAIIDFKTALTASG 3144544
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome
Length = 4109442
Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats.
Identities = 82/169 (48%), Positives = 108/169 (63%), Gaps = 4/169 (2%)
Frame = +3
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRME+L ++IRPSPS HLGGV R E + + EAA FDVV +ETVGVG
Sbjct: 1026993 GSILGDKTRMERLSRERAAFIRPSPSQSHLGGVARRTREAVSLCEAAGFDVVLIETVGVG 1027172
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSET +L+D+ +LL+ PA GDELQG+K+GI+E+AD+++V K DG K A +T + Y
Sbjct: 1027173 QSETVVAELSDLFLLLLAPAGGDELQGVKRGIMEMADLILVNKADGELKSTATRTCADYA 1027352
Query: 122 RAVMYTEAK----QGFEKPVLAVSAEERTNVPELWEAMMKMWNTRVESG 166
A+ + GF K L VSA E + W M + + R E+G
Sbjct: 1027353 GALRLLRKRVQDPPGFPK-ALTVSAVEEQGLDAAWTEMRALSDWRRENG 1027496
>emb|X66836.1|ECSERAICI E.coli serA, iciA, sbm genes and two open reading frames
Length = 6055
Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats.
Identities = 75/166 (45%), Positives = 98/166 (59%), Gaps = 1/166 (0%)
Frame = +1
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRM L ++IRP PS GHLGG + RA E++ + EAA +DVV VETVGVG
Sbjct: 5167 GSILGDKTRMNDLARAEAAFIRPVPSSGHLGGASQRARELMLLCEAAGYDVVIVETVGVG 5346
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSET+ + D I L GD+LQGIKKG++EVAD++V+ K+DG Y
Sbjct: 5347 QSETEVARMVDCFISLQIAGGGDDLQGIKKGLMEVADLIVINKDDGDNHTNVAIARHMYE 5526
Query: 122 RAVMYTEAKQGFEKP-VLAVSAEERTNVPELWEAMMKMWNTRVESG 166
A+ K +P VL SA E+ + E+W A++ SG
Sbjct: 5527 SALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKTALTASG 5664
>gb|U65074.1|ECU65074 Escherichia coli chromosome arginine transport ATPase (argK) gene,
complete cds
Length = 2140
Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats.
Identities = 75/166 (45%), Positives = 98/166 (59%), Gaps = 1/166 (0%)
Frame = +1
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRM L ++IRP PS GHLGG + RA E++ + EAA +DVV VETVGVG
Sbjct: 1252 GSILGDKTRMNDLARAEAAFIRPVPSSGHLGGASQRARELMLLCEAAGYDVVIVETVGVG 1431
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSET+ + D I L GD+LQGIKKG++EVAD++V+ K+DG Y
Sbjct: 1432 QSETEVARMVDCFISLQIAGGGDDLQGIKKGLMEVADLIVINKDDGDNHTNVAIARHMYE 1611
Query: 122 RAVMYTEAKQGFEKP-VLAVSAEERTNVPELWEAMMKMWNTRVESG 166
A+ K +P VL SA E+ + E+W A++ SG
Sbjct: 1612 SALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKTALTASG 1749
>emb|CU928160.2| Escherichia coli IAI1 chromosome, complete genome
Length = 4700560
Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats.
Identities = 75/166 (45%), Positives = 98/166 (59%), Gaps = 1/166 (0%)
Frame = +3
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRM L ++IRP PS GHLGG + RA E++ + EAA +DVV VETVGVG
Sbjct: 3121746 GSILGDKTRMNDLARAEAAFIRPVPSSGHLGGASQRARELMLLCEAAGYDVVIVETVGVG 3121925
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSET+ + D I L GD+LQGIKKG++EVAD++V+ K+DG Y
Sbjct: 3121926 QSETEVARMVDCFISLQIAGGGDDLQGIKKGLMEVADLLVINKDDGDNHTNVAIARHMYE 3122105
Query: 122 RAVMYTEAKQGFEKP-VLAVSAEERTNVPELWEAMMKMWNTRVESG 166
A+ K +P VL SA E+ + E+W A++ SG
Sbjct: 3122106 SALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKTALTASG 3122243
>dbj|AP009240.1| Escherichia coli SE11 DNA, complete genome
Length = 4887515
Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats.
Identities = 75/166 (45%), Positives = 98/166 (59%), Gaps = 1/166 (0%)
Frame = +1
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRM L ++IRP PS GHLGG + RA E++ + EAA +DVV VETVGVG
Sbjct: 3309172 GSILGDKTRMNDLARAEAAFIRPVPSSGHLGGASQRARELMLLCEAAGYDVVIVETVGVG 3309351
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSET+ + D I L GD+LQGIKKG++EVAD++V+ K+DG Y
Sbjct: 3309352 QSETEVARMVDCFISLQIAGGGDDLQGIKKGLMEVADLLVINKDDGDNHTNVAIARHMYE 3309531
Query: 122 RAVMYTEAKQGFEKP-VLAVSAEERTNVPELWEAMMKMWNTRVESG 166
A+ K +P VL SA E+ + E+W A++ SG
Sbjct: 3309532 SALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKTALTASG 3309669
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete sequence
Length = 3188609
Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats.
Identities = 80/169 (47%), Positives = 108/169 (63%), Gaps = 4/169 (2%)
Frame = +1
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRME+L P ++IRPSPS HLGGV R E + + EAA FDV+ +ETVGVG
Sbjct: 617503 GSILGDKTRMERLSRDPQAFIRPSPSQTHLGGVARRTREAVALCEAAGFDVILIETVGVG 617682
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSET L D+ +LL+ PA GDELQG+K+GI+E+AD+++V K DG K A +T++ Y
Sbjct: 617683 QSETVVAQLCDLFLLLLAPAGGDELQGVKRGIMEMADLILVNKADGDLKPAALRTVADYA 617862
Query: 122 RAVMYTEAK----QGFEKPVLAVSAEERTNVPELWEAMMKMWNTRVESG 166
A+ + + F K + VSA E + + W M + R E+G
Sbjct: 617863 GALRLLRRRPQDPEDFPK-AMPVSALEEQGLADAWTEMQALVAWRRETG 618006
>gb|CP000038.1| Shigella sonnei Ss046, complete genome
Length = 4825265
Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats.
Identities = 75/166 (45%), Positives = 98/166 (59%), Gaps = 1/166 (0%)
Frame = +1
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRM L ++IRP PS GHLGG + RA E++ + EAA +DVV VETVGVG
Sbjct: 3233476 GSILGDKTRMNDLARAEAAFIRPVPSSGHLGGASQRARELMLLCEAAGYDVVIVETVGVG 3233655
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSET+ + D I L GD+LQGIKKG++EVAD++V+ K+DG Y
Sbjct: 3233656 QSETEVARMVDCFISLQIAGGGDDLQGIKKGLMEVADLLVINKDDGDNHTNVAIARHMYE 3233835
Query: 122 RAVMYTEAKQGFEKP-VLAVSAEERTNVPELWEAMMKMWNTRVESG 166
A+ K +P VL SA E+ + E+W A++ SG
Sbjct: 3233836 SALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKTALTASG 3233973
>gb|CP000946.1| Escherichia coli ATCC 8739, complete genome
Length = 4746218
Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats.
Identities = 75/166 (45%), Positives = 98/166 (59%), Gaps = 1/166 (0%)
Frame = -2
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRM L ++IRP PS GHLGG + RA E++ + EAA +DVV VETVGVG
Sbjct: 849463 GSILGDKTRMNDLARAEAAFIRPVPSSGHLGGASQRARELMLLCEAAGYDVVIVETVGVG 849284
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSET+ + D I L GD+LQGIKKG++EVAD++V+ K+DG Y
Sbjct: 849283 QSETEVARMVDCFISLQIAGGGDDLQGIKKGLMEVADLLVINKDDGDNHTNVAIARHMYE 849104
Query: 122 RAVMYTEAKQGFEKP-VLAVSAEERTNVPELWEAMMKMWNTRVESG 166
A+ K +P VL SA E+ + E+W A++ SG
Sbjct: 849103 SALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKTALTASG 848966
>gb|CP000800.1| Escherichia coli E24377A, complete genome
Length = 4979619
Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats.
Identities = 75/166 (45%), Positives = 98/166 (59%), Gaps = 1/166 (0%)
Frame = +1
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRM L ++IRP PS GHLGG + RA E++ + EAA +DVV VETVGVG
Sbjct: 3266968 GSILGDKTRMNDLARAEAAFIRPVPSSGHLGGASQRARELMLLCEAAGYDVVIVETVGVG 3267147
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSET+ + D I L GD+LQGIKKG++EVAD++V+ K+DG Y
Sbjct: 3267148 QSETEVARMVDCFISLQIAGGGDDLQGIKKGLMEVADLLVINKDDGDNHTNVAIARHMYE 3267327
Query: 122 RAVMYTEAKQGFEKP-VLAVSAEERTNVPELWEAMMKMWNTRVESG 166
A+ K +P VL SA E+ + E+W A++ SG
Sbjct: 3267328 SALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKTALTASG 3267465
>gb|CP000577.1| Rhodobacter sphaeroides ATCC 17029 chromosome 1, complete sequence
Length = 3147721
Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats.
Identities = 80/169 (47%), Positives = 108/169 (63%), Gaps = 4/169 (2%)
Frame = +3
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRME+L P ++IRPSPS HLGGV R E + + EAA FDV+ +ETVGVG
Sbjct: 738849 GSILGDKTRMERLSRDPQAFIRPSPSQTHLGGVARRTREAVALCEAAGFDVILIETVGVG 739028
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSET L D+ +LL+ PA GDELQG+K+GI+E+AD+++V K DG K A +T++ Y
Sbjct: 739029 QSETVVAQLCDLFLLLLAPAGGDELQGVKRGIMEMADLILVNKADGDLKPAALRTVADYA 739208
Query: 122 RAVMYTEAK----QGFEKPVLAVSAEERTNVPELWEAMMKMWNTRVESG 166
A+ + + F K + VSA E + + W M + R E+G
Sbjct: 739209 GALRLLRRRPQDPEDFPK-AMPVSALEEQGLADAWTEMQALVAWRRETG 739352
>gb|CP001013.1| Leptothrix cholodnii SP-6, complete genome
Length = 4909403
Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats.
Identities = 76/180 (42%), Positives = 108/180 (60%), Gaps = 15/180 (8%)
Frame = -3
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRME L ++ ++YIRPSPS G LGGV + E + + EAA +D+V VETVGVG
Sbjct: 2966202 GSILGDKTRMEHLSVNEHAYIRPSPSSGTLGGVADKTRESMLVTEAAGYDIVIVETVGVG 2966023
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKND--------------G 107
QSET +TDM +LL P +GD+LQ IKKG++E+AD+VV+ K D
Sbjct: 2966022 QSETSVAAMTDMFVLLQLPNAGDDLQAIKKGVMELADLVVINKADIDPDAATRARAQITS 2965843
Query: 108 SRKLLAQQTISAY-TRAVMYTEAKQGFEKPVLAVSAEERTNVPELWEAMMKMWNTRVESG 166
+ +LL + + A AK ++ VL +SA + +PE W A+ + + + +G
Sbjct: 2965842 ALRLLGMHALHGHPDHAHGGAPAKPAWQPQVLQLSALKGAGLPEFWAAVSQFRDLQTANG 2965663
Score = 48.9 bits (115), Expect = 6e-04, Method: Composition-based stats.
Identities = 32/108 (29%), Positives = 54/108 (50%), Gaps = 3/108 (2%)
Frame = +1
Query: 2 GSILGDKTRMEKLGI---HPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETV 58
G++LGD+ RM G P Y+R + V++ +VL + A FD++ VET
Sbjct: 4309135 GALLGDRIRMNATGPWQQGPRVYVRSLATRDTGSEVSAALPDVLAAAKVAGFDLIIVETS 4309314
Query: 59 GVGQSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKND 106
G+GQ + L D+ + ++ P G Q K +++ A+ V + K D
Sbjct: 4309315 GIGQGDAAIVPLVDVPMYVMTPEFGAASQLEKIDMLDFAEFVAINKFD 4309458
>gb|CP000267.1| Rhodoferax ferrireducens T118, complete genome
Length = 4712337
Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats.
Identities = 64/105 (60%), Positives = 83/105 (79%)
Frame = -3
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRMEKL +H ++YIRPSPS G LGGV + E + + EAA++DVV VETVGVG
Sbjct: 3101977 GSILGDKTRMEKLSVHEHAYIRPSPSSGTLGGVAEKTREAMLVCEAASYDVVIVETVGVG 3101798
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKND 106
QSET ++TDM +L+ P +GD+LQ IKKG++E+AD+VV+ K D
Sbjct: 3101797 QSETAVANMTDMFVLMQLPNAGDDLQAIKKGVMELADLVVINKAD 3101663
Score = 41.2 bits (95), Expect = 0.11, Method: Composition-based stats.
Identities = 27/108 (25%), Positives = 53/108 (49%), Gaps = 3/108 (2%)
Frame = -1
Query: 2 GSILGDKTRMEKLGI---HPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETV 58
G++LGD+ RM + P ++R + +++ +V+ + A FD++ VET
Sbjct: 4027662 GALLGDRIRMNAISPWSQGPRVFMRSLATRDFGSEISAALPDVIAACKVAGFDLIVVETS 4027483
Query: 59 GVGQSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKND 106
G+GQ + D+ + ++ P G Q K +++ A+ V + K D
Sbjct: 4027482 GIGQGDAAIVPHVDVPLYVMTPEFGAASQLEKIDMLDFAEFVAINKFD 4027339
>gb|AY548464.2| Aeromicrobium erythreum strain NRRL B-3381 putative phosphoserine
aminotransferase gene, partial cds; and methylmalonyl-CoA
mutase beta subunit (mutA), methylmalonyl-CoA mutase
alpha subunit (mutB), methylmalonyl-CoA mutase protective
protein (meaB), and predicted MazG-family transcriptional
regulator genes, complete cds
Length = 8450
Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats.
Identities = 71/157 (45%), Positives = 96/157 (61%), Gaps = 1/157 (0%)
Frame = +3
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GS+LGDKTRM +L + P +YIRPSPS G LGGV + + + EAA +DVV VETVGVG
Sbjct: 5511 GSVLGDKTRMAQLAVSPQAYIRPSPSAGTLGGVARATSQAMTVLEAAGYDVVLVETVGVG 5690
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSE + D + L +GD+LQGIKKGI+E+AD++ V K DG R A+ T
Sbjct: 5691 QSEITVAGMVDTFLFLTIARTGDQLQGIKKGILEIADVIAVNKADGERAREAEVTAKDLA 5870
Query: 122 RAVMYTEA-KQGFEKPVLAVSAEERTNVPELWEAMMK 157
A+ A QG+ PV+ SA E + +W +++
Sbjct: 5871 GALRLVYAGTQGWVPPVVTCSALEHQGIDTVWNRLVR 5981
>gb|CP001108.1| Prosthecochloris aestuarii DSM 271, complete genome
Length = 2512923
Score = 132 bits (333), Expect = 3e-29, Method: Composition-based stats.
Identities = 70/153 (45%), Positives = 99/153 (64%), Gaps = 1/153 (0%)
Frame = -3
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDK RME+L YIRPSPS GHLGG + + EV+ + EAA F+++ VETVGVG
Sbjct: 952453 GSILGDKARMEQLSGKKEVYIRPSPSSGHLGGTSPKTHEVIMLAEAAGFNIIIVETVGVG 952274
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSE + + D ++LL+ P SGDELQGIK+GI+E+AD V +TK+D + + + ++ S+
Sbjct: 952273 QSEITIESMVDYILLLLLPGSGDELQGIKRGIMEIADSVAITKSDEADRAIMVRSESSCQ 952094
Query: 122 RAVMYTEAKQGFEKP-VLAVSAEERTNVPELWE 153
A+ K P V+ SA + E+W+
Sbjct: 952093 AAIRLLPKKYSCWTPEVILSSAVTGQGIEEIWK 951995
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
Length = 9105828
Score = 132 bits (333), Expect = 3e-29, Method: Composition-based stats.
Identities = 71/156 (45%), Positives = 98/156 (62%), Gaps = 1/156 (0%)
Frame = -3
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRM +L +++IRPSPS G LGGV ++ E + + EAA F VV VETVG+G
Sbjct: 3366685 GSILGDKTRMARLSASDDAFIRPSPSSGTLGGVAAKTREAMLLCEAAGFGVVLVETVGIG 3366506
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSET D+TD + L+ P GDELQGIKKG+VE+ADM+ + K DG A T + Y
Sbjct: 3366505 QSETAVCDMTDFFLALMLPGGGDELQGIKKGLVELADMIAINKADGDNLKRANITAADYR 3366326
Query: 122 RAV-MYTEAKQGFEKPVLAVSAEERTNVPELWEAMM 156
A+ + + + PV SA + ++W+ ++
Sbjct: 3366325 SALHILAPRSEHWHPPVETYSALTGDGIAKIWQKVL 3366218
>emb|AM286415.1| Yersinia enterocolitica subsp. enterocolitica 8081 complete genome
Length = 4615899
Score = 132 bits (332), Expect = 3e-29, Method: Composition-based stats.
Identities = 71/166 (42%), Positives = 101/166 (60%), Gaps = 1/166 (0%)
Frame = -2
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRM L ++++RP PS GHLGG++ E++ + EAA +D+V VETVGVG
Sbjct: 2079251 GSILGDKTRMLNLSRAEHAFVRPVPSRGHLGGISQSTRELILLCEAAGYDIVIVETVGVG 2079072
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSET+ + D + L GD+LQGIKKGI+E+AD +V+ K+DG + Y
Sbjct: 2079071 QSETEVAAMVDCFLSLQIAGGGDDLQGIKKGIMEMADFIVINKDDGENHINVDIARHMYH 2078892
Query: 122 RAVMYTEAKQGFEKP-VLAVSAEERTNVPELWEAMMKMWNTRVESG 166
A+ K +P VL+ SA E+ + E+W+A+ W +SG
Sbjct: 2078891 SALNIIRRKYPAWQPLVLSCSALEKRGIREVWQAIQTFWPVMTQSG 2078754
>emb|BX248357.1| Corynebacterium diphtheriae gravis NCTC13129, complete genome; segment
4/8
Length = 349535
Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats.
Identities = 74/166 (44%), Positives = 96/166 (57%), Gaps = 1/166 (0%)
Frame = -1
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRM KL N++IRPSPS G LGGV E + +FEAA +DV+ VETVGVG
Sbjct: 240077 GSILGDKTRMAKLAREDNAFIRPSPSAGTLGGVAKATRESMVVFEAAGYDVILVETVGVG 239898
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSE + D L +GD+LQGIKKGI+E+AD+V + K DG A++
Sbjct: 239897 QSEVAVSQMVDCFTFLALAGAGDQLQGIKKGILEMADLVAINKADGPNLKNAKRAARELA 239718
Query: 122 RAV-MYTEAKQGFEKPVLAVSAEERTNVPELWEAMMKMWNTRVESG 166
A+ M + + P + +SA E V E WE + +ESG
Sbjct: 239717 AAMRMVRQENDLWHPPTITMSAVEHEGVDEFWEHVQNHNKAMLESG 239580
>gb|CP001063.1| Shigella boydii CDC 3083-94, complete genome
Length = 4615997
Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats.
Identities = 74/166 (44%), Positives = 98/166 (59%), Gaps = 1/166 (0%)
Frame = +1
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDK RM L ++IRP PS GHLGG + RA E++ + EAA +DVV VETVGVG
Sbjct: 3110362 GSILGDKIRMNDLARAEAAFIRPVPSSGHLGGASQRARELMLLCEAAGYDVVIVETVGVG 3110541
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSET+ + D I L GD+LQGIKKG++EVAD++V+ K+DG Y
Sbjct: 3110542 QSETEVARMVDCFISLQIAGGGDDLQGIKKGLMEVADLIVINKDDGDNHTNVAIARHMYE 3110721
Query: 122 RAVMYTEAKQGFEKP-VLAVSAEERTNVPELWEAMMKMWNTRVESG 166
A+ K +P VL SA E+ + E+W A+++ SG
Sbjct: 3110722 SALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIEFKTALTASG 3110859
>gb|CP000036.1| Shigella boydii Sb227, complete genome
Length = 4519823
Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats.
Identities = 74/166 (44%), Positives = 98/166 (59%), Gaps = 1/166 (0%)
Frame = -2
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDK RM L ++IRP PS GHLGG + RA E++ + EAA +DVV VETVGVG
Sbjct: 3074848 GSILGDKIRMNDLARAEAAFIRPVPSSGHLGGASQRARELMLLCEAAGYDVVIVETVGVG 3074669
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSET+ + D I L GD+LQGIKKG++EVAD++V+ K+DG Y
Sbjct: 3074668 QSETEVARMVDCFISLQIAGGGDDLQGIKKGLMEVADLIVINKDDGDNHTNVAIARHMYE 3074489
Query: 122 RAVMYTEAKQGFEKP-VLAVSAEERTNVPELWEAMMKMWNTRVESG 166
A+ K +P VL SA E+ + E+W A+++ SG
Sbjct: 3074488 SALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIEFKTALTASG 3074351
>gb|CP000351.1| Leptospira borgpetersenii serovar Hardjo-bovis JB197 chromosome 2,
complete sequence
Length = 299762
Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats.
Identities = 69/157 (43%), Positives = 100/157 (63%), Gaps = 1/157 (0%)
Frame = -2
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRM +L + +++IRPSPSG LGGV + E + + EAA FD +FVETVGVG
Sbjct: 143674 GSILGDKTRMSELSRNESAFIRPSPSGESLGGVARKTRETIYLCEAAGFDTIFVETVGVG 143495
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSET + D+ +LL+ +GDELQGIK+GI+E+AD+ +TK DG K A+ T +
Sbjct: 143494 QSETAVHSMVDLFLLLLIAGAGDELQGIKRGIMEMADLFAITKADGDNKTRAEITRTETQ 143315
Query: 122 RAVMYTEAKQ-GFEKPVLAVSAEERTNVPELWEAMMK 157
A+ + + G+ S+ +PE+W +++
Sbjct: 143314 SAIHFFPINESGWIPKAFTCSSLSGEGIPEIWNQILE 143204
Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 52/158 (32%), Positives = 83/158 (52%), Gaps = 2/158 (1%)
Frame = -3
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GS+LGD+TR+ Y R PS LGGV + V+ + F VF+ETVG+G
Sbjct: 65670 GSLLGDRTRLFLPAREKRIYFRSQPSQLELGGVNPYTYHVIRLLRRF-FRYVFIETVGIG 65494
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
Q+E + LTD+ L++ P GD++Q +K GI+EV D ++ K D ++LA + T
Sbjct: 65493 QNEIEVFKLTDLSFLVLQPLGGDQVQFMKSGIMEVPDSFIINKCD--EEVLANSSYHMLT 65320
Query: 122 RAVMYTEAKQGFEK--PVLAVSAEERTNVPELWEAMMK 157
+ + + + PV SA+ + + +L E + K
Sbjct: 65319 TTLEFLKDVMPGKNLPPVFKTSAKTKYGIDDLLEFIRK 65206
>gb|CP000349.1| Leptospira borgpetersenii serovar Hardjo-bovis L550 chromosome 2,
complete sequence
Length = 317336
Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats.
Identities = 69/157 (43%), Positives = 100/157 (63%), Gaps = 1/157 (0%)
Frame = -3
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRM +L + +++IRPSPSG LGGV + E + + EAA FD +FVETVGVG
Sbjct: 160995 GSILGDKTRMSELSRNESAFIRPSPSGESLGGVARKTRETIYLCEAAGFDTIFVETVGVG 160816
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSET + D+ +LL+ +GDELQGIK+GI+E+AD+ +TK DG K A+ T +
Sbjct: 160815 QSETAVHSMVDLFLLLLIAGAGDELQGIKRGIMEMADLFAITKADGDNKTRAEITRTETQ 160636
Query: 122 RAVMYTEAKQ-GFEKPVLAVSAEERTNVPELWEAMMK 157
A+ + + G+ S+ +PE+W +++
Sbjct: 160635 SAIHFFPINESGWIPKAFTCSSLSGEGIPEIWNQILE 160525
Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 52/158 (32%), Positives = 83/158 (52%), Gaps = 2/158 (1%)
Frame = -1
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GS+LGD+TR+ Y R PS LGGV + V+ + F VF+ETVG+G
Sbjct: 65669 GSLLGDRTRLFLPAREKRIYFRSQPSQLELGGVNPYTYHVIRLLRRF-FRYVFIETVGIG 65493
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
Q+E + LTD+ L++ P GD++Q +K GI+EV D ++ K D ++LA + T
Sbjct: 65492 QNEIEVFKLTDLSFLVLQPLGGDQVQFMKSGIMEVPDSFIINKCD--EEVLANSSYHMLT 65319
Query: 122 RAVMYTEAKQGFEK--PVLAVSAEERTNVPELWEAMMK 157
+ + + + PV SA+ + + +L E + K
Sbjct: 65318 TTLEFLKDVMPGKNLPPVFKTSAKTKYGIDDLLEFIRK 65205
>dbj|BA000030.3| Streptomyces avermitilis MA-4680 DNA, complete genome
Length = 9025608
Score = 132 bits (331), Expect = 5e-29, Method: Composition-based stats.
Identities = 69/155 (44%), Positives = 98/155 (63%), Gaps = 1/155 (0%)
Frame = +3
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRME+L + P +++RPSP+ G LGGV E + + EAA +DVV VETVGVG
Sbjct: 2489418 GSILGDKTRMERLAVDPAAFVRPSPTAGTLGGVAKATRESIVVMEAAGYDVVLVETVGVG 2489597
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSET ++ D +LL +GD+LQGIKKG++E+AD++ V K DG + A+
Sbjct: 2489598 QSETAVANMVDSFLLLTLARTGDQLQGIKKGVLELADVIAVNKADGPHERDARAAARELA 2489777
Query: 122 RAV-MYTEAKQGFEKPVLAVSAEERTNVPELWEAM 155
A+ + A + PVL+ SA + + +WE +
Sbjct: 2489778 GALRLMHGANAAWTPPVLSCSARDAVGLDTVWERL 2489882
Score = 90.5 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 45/105 (42%), Positives = 64/105 (60%)
Frame = -3
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
G++LGD+ RM + P YIR + GHLGG+ A + + + +AA DV+ VETVGVG
Sbjct: 3498295 GALLGDRVRMSEHASDPGVYIRSMATRGHLGGLAWAAPQAIRVLDAAGCDVILVETVGVG 3498116
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKND 106
QSE + D ++L+ P GD +Q K GI+E+ D+ VV K D
Sbjct: 3498115 QSEVEIASQADTSVVLLAPGMGDGIQAAKAGILEIGDVYVVNKAD 3497981
>gb|CP000557.1| Geobacillus thermodenitrificans NG80-2, complete genome
Length = 3550319
Score = 132 bits (331), Expect = 5e-29, Method: Composition-based stats.
Identities = 70/166 (42%), Positives = 100/166 (60%), Gaps = 1/166 (0%)
Frame = -3
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRME L +P ++IRPSPSGG LGGV + E + + EAA +D++ VETVGVG
Sbjct: 2417862 GSILGDKTRMETLARNPRAFIRPSPSGGALGGVHRKTRETMMLCEAAGYDIILVETVGVG 2417683
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSE + + D +LL +GDELQG+K+GI+E+ D +V+ K DG K A+ Y
Sbjct: 2417682 QSEFVVRGMVDFFLLLALTGAGDELQGMKRGIMELVDAIVINKADGDNKEKARAAQKEYN 2417503
Query: 122 RAVMYTE-AKQGFEKPVLAVSAEERTNVPELWEAMMKMWNTRVESG 166
+ + Y A G++ SA + ++W+ + T +SG
Sbjct: 2417502 QFLHYLRPATPGWQTKAYTCSALWGEGIADIWQVIETFVKTTKQSG 2417365
Score = 49.3 bits (116), Expect = 4e-04, Method: Composition-based stats.
Identities = 33/137 (24%), Positives = 68/137 (49%), Gaps = 1/137 (0%)
Frame = -3
Query: 2 GSILGDKTRMEKLGIH-PNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGV 60
G++LGD+ RM IH P Y+R + ++ + + + +AA FD++ VET G+
Sbjct: 3444066 GALLGDRIRMN--AIHSPRVYMRSLATRHSRSELSPAIRDAISVVKAAGFDLIIVETSGI 3443893
Query: 61 GQSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAY 120
GQ + ++ D+ + ++ G Q K +++ AD++ + K + A++ +
Sbjct: 3443892 GQGDAAITEVCDVSMYVMTSEFGAPTQLEKIDMIDYADLIAINKFERKGSEDAKRQVQK- 3443716
Query: 121 TRAVMYTEAKQGFEKPV 137
Y ++Q F++ V
Sbjct: 3443715 ----QYQRSRQLFDRDV 3443677
>emb|CU928163.2| Escherichia coli UMN026 chromosome, complete genome
Length = 5202090
Score = 131 bits (330), Expect = 6e-29, Method: Composition-based stats.
Identities = 74/166 (44%), Positives = 97/166 (58%), Gaps = 1/166 (0%)
Frame = +1
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRM L ++IRP PS GHLGG + RA E++ + EAA +DVV VETVGVG
Sbjct: 3387808 GSILGDKTRMNDLARAEAAFIRPVPSSGHLGGASQRARELMLLCEAAGYDVVIVETVGVG 3387987
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSET+ + D I L GD+LQGIKKG++EVAD++V+ K+DG Y
Sbjct: 3387988 QSETEVARMVDCFISLQIAGGGDDLQGIKKGLMEVADLIVINKDDGDNHTNVAIARHMYE 3388167
Query: 122 RAVMYTEAKQGFEKP-VLAVSAEERTNVPELWEAMMKMWNTRVESG 166
A+ K +P VL SA E+ + +W A++ SG
Sbjct: 3388168 SALHILRRKYDEWQPRVLTCSALEKRGIDAIWHAIIDFKTALTASG 3388305
>gb|CP000140.1| Parabacteroides distasonis ATCC 8503, complete genome
Length = 4811379
Score = 131 bits (330), Expect = 7e-29, Method: Composition-based stats.
Identities = 69/153 (45%), Positives = 95/153 (62%), Gaps = 1/153 (0%)
Frame = -2
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRME L N++IRPSPS G LGGV + E + + EAA FD VFVETVGVG
Sbjct: 4561721 GSILGDKTRMEALSREKNAFIRPSPSAGSLGGVARKTRETIVLCEAAGFDTVFVETVGVG 4561542
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSET + D +L+ +GDELQGIK+GI+E+AD +++ K DG A + +
Sbjct: 4561541 QSETAVHSMVDFFLLIQLAGTGDELQGIKRGIMEMADGIIINKADGDNIDKANLAAAQFR 4561362
Query: 122 RAV-MYTEAKQGFEKPVLAVSAEERTNVPELWE 153
A+ ++ ++ G+ VL S + E+W+
Sbjct: 4561361 NALHLFPPSESGWFPKVLTYSGYYNIGIKEIWD 4561263
>gb|CP000088.1| Thermobifida fusca YX, complete genome
Length = 3642249
Score = 131 bits (330), Expect = 7e-29, Method: Composition-based stats.
Identities = 72/166 (43%), Positives = 99/166 (59%), Gaps = 1/166 (0%)
Frame = +3
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRM +L PN+++RPSPS G LGGV E + + EAA FDVV VETVGVG
Sbjct: 3242973 GSILGDKTRMTRLATDPNAFVRPSPSAGTLGGVARATRETMILMEAAGFDVVLVETVGVG 3243152
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSE ++ D + L +GD+LQGIKKG++E+ D+V V K DG A++ +
Sbjct: 3243153 QSEVTVAEMVDCFLFLTLARTGDQLQGIKKGVLELVDVVAVNKADGPHVQEARRAARELS 3243332
Query: 122 RAV-MYTEAKQGFEKPVLAVSAEERTNVPELWEAMMKMWNTRVESG 166
RA+ + + PVL S E + + E+WE ++ E+G
Sbjct: 3243333 RALRLLQPPSPSWTPPVLTCSGLEGSGLDEVWEQVLAHRAALEETG 3243470
Score = 44.3 bits (103), Expect = 0.012, Method: Composition-based stats.
Identities = 28/103 (27%), Positives = 52/103 (50%)
Frame = -3
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
G++LGD+ RM + Y + G + ++L + +AA FD++ VET G+G
Sbjct: 3302635 GALLGDRIRMNSIDSDHIFYRSLATRGSR--ELPEHIDDILTVVKAAGFDLIIVETPGIG 3302462
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTK 104
Q + +D+ + ++ P G Q K +++ AD+V + K
Sbjct: 3302461 QGDAAIVPYSDVSLYVMTPEFGAASQLEKIDMLDFADVVAINK 3302333
>gb|AE010301.1| Leptospira interrogans serovar Lai str. 56601 chromosome II, complete
sequence
Length = 358943
Score = 131 bits (329), Expect = 8e-29, Method: Composition-based stats.
Identities = 69/157 (43%), Positives = 101/157 (64%), Gaps = 1/157 (0%)
Frame = +2
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRM +L + +++IRPSPSG LGGV + E + + EAA FD + VETVGVG
Sbjct: 274664 GSILGDKTRMSELSKNESAFIRPSPSGDSLGGVARKTRETIYLCEAAGFDTILVETVGVG 274843
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSET + D+ +LL+ +GDELQGIK+GI+E+AD+ +TK DG K+ A++T
Sbjct: 274844 QSETAVHSMVDLFLLLLIAGAGDELQGIKRGIMEMADLFAITKADGDNKVRAERTRIETQ 275023
Query: 122 RAVMYTEAKQGFEKP-VLAVSAEERTNVPELWEAMMK 157
A+ + ++ P VL S+ + E+W +++
Sbjct: 275024 SAIHFFPKQESSWIPKVLTCSSLSGEGIGEIWNQILE 275134
Score = 83.2 bits (204), Expect = 3e-14, Method: Composition-based stats.
Identities = 45/115 (39%), Positives = 65/115 (56%)
Frame = -3
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GS+LGD+TR+ Y R PS LGGV + V+ + F VF+ETVG+G
Sbjct: 62625 GSLLGDRTRLSLPAREKRIYFRSQPSQLELGGVNPYTYHVIRLLRCF-FRFVFIETVGIG 62449
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQT 116
Q+E + LTD+ L++ P GD++Q +K GI+EV D ++ K D K LA +
Sbjct: 62448 QNEIEVSKLTDLSFLVLQPLGGDQIQFMKSGIMEVPDSFILNKCD--EKTLANSS 62290
>gb|AE016824.1| Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130,
chromosome II, complete sequence
Length = 350181
Score = 131 bits (329), Expect = 8e-29, Method: Composition-based stats.
Identities = 69/157 (43%), Positives = 101/157 (64%), Gaps = 1/157 (0%)
Frame = +1
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRM +L + +++IRPSPSG LGGV + E + + EAA FD + VETVGVG
Sbjct: 270394 GSILGDKTRMSELSKNESAFIRPSPSGDSLGGVARKTRETIYLCEAAGFDTILVETVGVG 270573
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSET + D+ +LL+ +GDELQGIK+GI+E+AD+ +TK DG K+ A++T
Sbjct: 270574 QSETAVHSMVDLFLLLLIAGAGDELQGIKRGIMEMADLFAITKADGDNKVRAERTRIETQ 270753
Query: 122 RAVMYTEAKQGFEKP-VLAVSAEERTNVPELWEAMMK 157
A+ + ++ P VL S+ + E+W +++
Sbjct: 270754 SAIHFFPKQESSWIPKVLTCSSLSGEGIGEIWNQILE 270864
Score = 83.2 bits (204), Expect = 3e-14, Method: Composition-based stats.
Identities = 45/115 (39%), Positives = 65/115 (56%)
Frame = -2
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GS+LGD+TR+ Y R PS LGGV + V+ + F VF+ETVG+G
Sbjct: 60545 GSLLGDRTRLSLPAREKRIYFRSQPSQLELGGVNPYTYHVIRLLRCF-FRFVFIETVGIG 60369
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQT 116
Q+E + LTD+ L++ P GD++Q +K GI+EV D ++ K D K LA +
Sbjct: 60368 QNEIEVSKLTDLSFLVLQPLGGDQIQFMKSGIMEVPDSFILNKCD--EKTLANSS 60210
>dbj|BA000036.3| Corynebacterium glutamicum ATCC 13032 DNA, complete genome
Length = 3309401
Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats.
Identities = 71/166 (42%), Positives = 98/166 (59%), Gaps = 1/166 (0%)
Frame = -1
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRM KL N++IRPSPS G LGGV E + +FEAA +D++ VETVGVG
Sbjct: 1611839 GSILGDKTRMSKLSNAENAFIRPSPSAGTLGGVAKATREAMVVFEAAGYDIIIVETVGVG 1611660
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSE + D+ L +GD+LQGIKKG++E+A++V + K DG + A++
Sbjct: 1611659 QSEVAVSHMVDIFTFLALSGAGDQLQGIKKGVLEMAELVAINKADGPNEKPAKRAARDLA 1611480
Query: 122 RAV-MYTEAKQGFEKPVLAVSAEERTNVPELWEAMMKMWNTRVESG 166
A+ M + + P + +SA E T V W + T VE+G
Sbjct: 1611479 SALRMVRSPDELWHPPTITMSAVEGTGVDTFWHHVQNHHKTMVEAG 1611342
>emb|BX927152.1| Corynebacterium glutamicum ATCC 13032, IS fingerprint type 4-5, complete
genome; segment 5/10
Length = 349799
Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats.
Identities = 71/166 (42%), Positives = 98/166 (59%), Gaps = 1/166 (0%)
Frame = -3
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRM KL N++IRPSPS G LGGV E + +FEAA +D++ VETVGVG
Sbjct: 217614 GSILGDKTRMSKLSNAENAFIRPSPSAGTLGGVAKATREAMVVFEAAGYDIIIVETVGVG 217435
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSE + D+ L +GD+LQGIKKG++E+A++V + K DG + A++
Sbjct: 217434 QSEVAVSHMVDIFTFLALSGAGDQLQGIKKGVLEMAELVAINKADGPNEKPAKRAARDLA 217255
Query: 122 RAV-MYTEAKQGFEKPVLAVSAEERTNVPELWEAMMKMWNTRVESG 166
A+ M + + P + +SA E T V W + T VE+G
Sbjct: 217254 SALRMVRSPDELWHPPTITMSAVEGTGVDTFWHHVQNHHKTMVEAG 217117
>dbj|AP009044.1| Corynebacterium glutamicum R DNA, complete genome
Length = 3314179
Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats.
Identities = 71/166 (42%), Positives = 98/166 (59%), Gaps = 1/166 (0%)
Frame = -3
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRM KL N++IRPSPS G LGGV E + +FEAA +D++ VETVGVG
Sbjct: 1754894 GSILGDKTRMSKLSNAENAFIRPSPSAGTLGGVAKATREAMVVFEAAGYDIIIVETVGVG 1754715
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSE + D+ L +GD+LQGIKKG++E+A++V + K DG + A++
Sbjct: 1754714 QSEVAVSHMVDIFTFLALSGAGDQLQGIKKGVLEMAELVAINKADGPNEKPAKRAARDLA 1754535
Query: 122 RAV-MYTEAKQGFEKPVLAVSAEERTNVPELWEAMMKMWNTRVESG 166
A+ M + + P + +SA E T V W + T VE+G
Sbjct: 1754534 SALRMVRSPDELWHPPTITMSAVEGTGVDTFWHHVQNHHKTMVEAG 1754397
>gb|CP001392.1| Diaphorobacter sp. TPSY, complete genome
Length = 3796573
Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats.
Identities = 62/105 (59%), Positives = 80/105 (76%)
Frame = +2
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRME L +HP++YIRPSPS G LGGV + E + + EAA +DVV +ETVGVG
Sbjct: 1970711 GSILGDKTRMEHLSVHPDAYIRPSPSSGTLGGVAEKTREAMLVCEAAGYDVVIIETVGVG 1970890
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKND 106
QSE + +TDM +L P +GD+LQ IKKG++E+AD+VV+ K D
Sbjct: 1970891 QSEIAVQGMTDMFCVLQLPNAGDDLQAIKKGVMELADLVVINKAD 1971025
>gb|CP000539.1| Acidovorax sp. JS42, complete genome
Length = 4448856
Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats.
Identities = 62/105 (59%), Positives = 80/105 (76%)
Frame = +2
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRME L +HP++YIRPSPS G LGGV + E + + EAA +DVV +ETVGVG
Sbjct: 2150228 GSILGDKTRMEHLSVHPDAYIRPSPSSGTLGGVAEKTREAMLVCEAAGYDVVIIETVGVG 2150407
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKND 106
QSE + +TDM +L P +GD+LQ IKKG++E+AD+VV+ K D
Sbjct: 2150408 QSEIAVQGMTDMFCVLQLPNAGDDLQAIKKGVMELADLVVINKAD 2150542
>emb|CR405828.1| Gallus gallus finished cDNA, clone ChEST575f1
Length = 979
Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats.
Identities = 69/161 (42%), Positives = 101/161 (62%), Gaps = 1/161 (0%)
Frame = +3
Query: 7 DKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVGQSETQ 66
DKTRM +L N+YIRPSP+ G LGGVT E + + E ++VV VETVGVGQSE
Sbjct: 228 DKTRMTELSRDMNAYIRPSPTRGTLGGVTRTTNEAILLCEGGGYNVVLVETVGVGQSEFA 407
Query: 67 CKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYTRAVMY 126
D+ DM IL++PPA GDELQGIK+GI+E+AD+V + K DG + A++ + Y A+
Sbjct: 408 VADMVDMFILVLPPAGGDELQGIKRGIIEMADLVAINKADGDLIVPARRIQAEYVSAMKL 587
Query: 127 TEAKQGFEKP-VLAVSAEERTNVPELWEAMMKMWNTRVESG 166
+ +P V+ +SA+ + ++W+ M + + + SG
Sbjct: 588 LRKRSKVWRPKVMRISAKTGEGISDMWDKMTEFRDLMLTSG 710
>gb|CP000529.1| Polaromonas naphthalenivorans CJ2, complete genome
Length = 4410291
Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats.
Identities = 75/177 (42%), Positives = 104/177 (58%), Gaps = 12/177 (6%)
Frame = -1
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRMEKL +YIRPSPS G LGGV + E + + EAA +DVV VETVGVG
Sbjct: 2511321 GSILGDKTRMEKLSSEERAYIRPSPSSGTLGGVAEKTREAMLVCEAAGYDVVIVETVGVG 2511142
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKN--DGSRKLLAQQTISA 119
QSET ++TDM +++ P +GD+LQ IKKG++E+AD+VV+ K D + + A+ I +
Sbjct: 2511141 QSETAVANMTDMFVVMQLPNAGDDLQAIKKGVMELADLVVINKADIDANAAMRAEAQIKS 2510962
Query: 120 YTR----------AVMYTEAKQGFEKPVLAVSAEERTNVPELWEAMMKMWNTRVESG 166
R A + + + VL +SA V W A+ + N + +G
Sbjct: 2510961 AMRLFGLVNNAMGAAQAADFDKQWHPQVLQLSALHNKGVDAFWAAVTQFRNLQTANG 2510791
Score = 41.6 bits (96), Expect = 0.095, Method: Composition-based stats.
Identities = 36/123 (29%), Positives = 63/123 (51%), Gaps = 6/123 (4%)
Frame = +1
Query: 2 GSILGDKTRMEKLGIHPNS-----YIRPSPSGGHLGGVTSRAW-EVLEIFEAANFDVVFV 55
G++LGD+ RM I+P S ++R S + G S+A +V+ +AA FD++ V
Sbjct: 3741811 GALLGDRIRMN--AINPWSQGQRVFMR-SLATRDFGSEISKALPDVIAACKAAGFDLIIV 3741981
Query: 56 ETVGVGQSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQ 115
ET G+GQ + D+ + ++ P G Q K +++ A+ V + K D L A +
Sbjct: 3741982 ETSGIGQGDAAIVPHVDVPMYVMTPEFGAASQLEKIDMLDFAEFVAINKFDRKGALDALR 3742161
Query: 116 TIS 118
++
Sbjct: 3742162 DVA 3742170
>gb|CP000512.1| Acidovorax avenae subsp. citrulli AAC00-1, complete genome
Length = 5352772
Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats.
Identities = 61/105 (58%), Positives = 79/105 (75%)
Frame = +1
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRME+L +H +YIRPSPS G LGGV + E + + EAA +D+V VETVGVG
Sbjct: 2752348 GSILGDKTRMERLSVHEQAYIRPSPSSGTLGGVAEKTREAMLVCEAAGYDIVIVETVGVG 2752527
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKND 106
QSET +TDM +L+ P +GD+LQ IKKG++E+AD+V + K D
Sbjct: 2752528 QSETAVAGMTDMFVLMQLPNAGDDLQAIKKGVMEIADLVAINKAD 2752662
>gb|CP000817.1| Lysinibacillus sphaericus C3-41, complete genome
Length = 4639821
Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats.
Identities = 66/147 (44%), Positives = 99/147 (67%), Gaps = 1/147 (0%)
Frame = -3
Query: 7 DKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVGQSETQ 66
DKTRME+L P +++RPSPS G LGGV + E + + EAA +DV+ +ETVGVGQSET
Sbjct: 3410731 DKTRMEELVKKPTAFVRPSPSAGTLGGVHKKTRETMLVCEAAGYDVILIETVGVGQSETY 3410552
Query: 67 CKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYTRAVMY 126
+ + D +LLV +GDELQG+KKGI+E+AD +VV K DG LA++T++ Y + + +
Sbjct: 3410551 VRGMVDFFLLLVLTGAGDELQGMKKGIMELADAIVVHKADGDNVRLAKKTVAEYKQILHF 3410372
Query: 127 TE-AKQGFEKPVLAVSAEERTNVPELW 152
+ A G+ + VS+ E+ + ++W
Sbjct: 3410371 LQPATPGWMSTAMPVSSLEKRGLDKVW 3410291
Score = 52.0 bits (123), Expect = 6e-05, Method: Composition-based stats.
Identities = 31/115 (26%), Positives = 60/115 (52%), Gaps = 2/115 (1%)
Frame = +1
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
G++LGD+ RM + + Y+R + G +T+ +V+++ A +D++ VET G+G
Sbjct: 1031203 GALLGDRIRMNAI-FNNRVYMRSLATRGSRTELTASIGDVIDVVRVAGYDLIIVETSGIG 1031379
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTK--NDGSRKLLAQ 114
Q + + TD+ + ++ G Q K +++ AD++ + K GS L Q
Sbjct: 1031380 QGDAEITKYTDLSMYVMTSEFGAPTQLEKIDMIDFADVIAINKFERKGSEDALRQ 1031544
>gb|CP001110.1| Pelodictyon phaeoclathratiforme BU-1, complete genome
Length = 3018238
Score = 129 bits (324), Expect = 3e-28, Method: Composition-based stats.
Identities = 69/153 (45%), Positives = 97/153 (63%), Gaps = 1/153 (0%)
Frame = -1
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDK RMEKL ++IRP+ S +LGG + + E + + EAA +DV+ VETVGVG
Sbjct: 1218061 GSILGDKARMEKLAGRKEAFIRPTASSCYLGGTSPKTHETIILCEAAGYDVIMVETVGVG 1217882
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSE + D ++LL+ P SGDELQGIK+GI+E+AD V +TK DG + +A + + +
Sbjct: 1217881 QSEVLVDTMVDFILLLMLPGSGDELQGIKRGIMEIADAVAITKTDGDQAGIAAVSRAEFE 1217702
Query: 122 RAVMYTEAKQGFEKP-VLAVSAEERTNVPELWE 153
A+ AK F +P V SA + E+W+
Sbjct: 1217701 AALRMLPAKHPFWQPKVFLTSAITGIGIKEVWQ 1217603
>emb|CU358835.1| Aphanomyces euteiches cDNA
Length = 811
Score = 129 bits (324), Expect = 3e-28, Method: Composition-based stats.
Identities = 66/123 (53%), Positives = 85/123 (69%)
Frame = +3
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRM L P++++RPSP+ G LGGV E++ + EA +D+V VE+VG+G
Sbjct: 438 GSILGDKTRMTHLANSPHAFVRPSPTRGTLGGVAQHTNEIVLLCEACGYDIVLVESVGLG 617
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSE D DM++LLVPPA GDELQG KKGI+E+AD+VVV K D K A+ T Y
Sbjct: 618 QSEIIIDDTVDMVMLLVPPAGGDELQGSKKGIMEIADVVVVNKADSELKSAAKHTAVDYM 797
Query: 122 RAV 124
A+
Sbjct: 798 HAL 806
>gb|CP000266.1| Shigella flexneri 5 str. 8401, complete genome
Length = 4574284
Score = 128 bits (322), Expect = 5e-28, Method: Composition-based stats.
Identities = 73/166 (43%), Positives = 96/166 (57%), Gaps = 1/166 (0%)
Frame = +1
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRM L ++IRP PS GHLGG + RA E++ + EAA +DVV VETVGV
Sbjct: 3036145 GSILGDKTRMNDLARAEAAFIRPVPSSGHLGGASQRARELMLLCEAAGYDVVIVETVGVA 3036324
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSET+ + D I L GD+LQGIKKG++EVAD++V+ K+DG Y
Sbjct: 3036325 QSETEVARMVDCFISLQIAGGGDDLQGIKKGLMEVADLLVINKDDGDNHTNVAIARHMYE 3036504
Query: 122 RAVMYTEAKQGFEKPV-LAVSAEERTNVPELWEAMMKMWNTRVESG 166
A+ K +P L SA E+ + E+W A++ SG
Sbjct: 3036505 SALHILRRKYDEWQPRGLTCSALEKRGIDEIWHAIIDFKTALTASG 3036642
>gb|AE014073.1| Shigella flexneri 2a str. 2457T, complete genome
Length = 4599354
Score = 128 bits (321), Expect = 7e-28, Method: Composition-based stats.
Identities = 72/166 (43%), Positives = 96/166 (57%), Gaps = 1/166 (0%)
Frame = +2
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRM L ++IRP PS GHLGG + RA E++ + EAA +DVV VETVG+
Sbjct: 2989631 GSILGDKTRMNDLARAEAAFIRPVPSSGHLGGASQRARELMLLCEAAGYDVVIVETVGIA 2989810
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSET+ + D I L GD+LQGIKKG++EVAD++V+ K+DG Y
Sbjct: 2989811 QSETEVARMVDCFISLQIAGGGDDLQGIKKGLMEVADLLVINKDDGDNHTNVAIARHMYE 2989990
Query: 122 RAVMYTEAKQGFEKPV-LAVSAEERTNVPELWEAMMKMWNTRVESG 166
A+ K +P L SA E+ + E+W A++ SG
Sbjct: 2989991 SALHILRRKYDEWQPRGLTCSALEKRGIDEIWHAIIDFKTALTASG 2990128
>gb|CP000884.1| Delftia acidovorans SPH-1, complete genome
Length = 6767514
Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats.
Identities = 73/163 (44%), Positives = 102/163 (62%), Gaps = 9/163 (5%)
Frame = +3
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRME+L +H ++YIRPSPS G LGGV + E + + EAA +DVV VETVGVG
Sbjct: 4125546 GSILGDKTRMEQLSVHLDAYIRPSPSSGTLGGVAEKTREAMLVCEAAGYDVVIVETVGVG 4125725
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKN--DGSRKLLAQQTISA 119
QSE + + DM LL P +GD+LQ IKKG++E+AD+VV+ K D AQ I++
Sbjct: 4125726 QSEIAVQGMCDMFCLLQLPNAGDDLQAIKKGVMELADLVVINKADIDPHAATRAQAQITS 4125905
Query: 120 YTRAV-MYTEAKQG------FEKPVLAVSAEERTNVPELWEAM 155
R + M+ + ++ V+ +SA ++ V W A+
Sbjct: 4125906 SLRLLGMHGNPEHAHHDERLWQPRVITISALKQEGVDGFWSAV 4126034
>gb|CP001089.1| Geobacter lovleyi SZ, complete genome
Length = 3917761
Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats.
Identities = 76/168 (45%), Positives = 103/168 (61%), Gaps = 3/168 (1%)
Frame = -1
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRME+L + N++IRPSP+G LGGV R E + + EAA + VV VETVGVG
Sbjct: 3486739 GSILGDKTRMEELSRNYNAFIRPSPAGDTLGGVARRTRETMLLCEAAGYTVVIVETVGVG 3486560
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKL--LAQQTISA 119
QSET + D +LL +GDELQGIKKG++E+AD +++ K D R+ LA+Q
Sbjct: 3486559 QSETTVASMVDFFMLLQLATAGDELQGIKKGVMELADAIIINKADIDRQKTELARQQ--- 3486389
Query: 120 YTRAVMYTEAK-QGFEKPVLAVSAEERTNVPELWEAMMKMWNTRVESG 166
Y A+ K + + PV VSA +P +WE + + +SG
Sbjct: 3486388 YQNALHILRPKSRNWIVPVQMVSALRNEGIPGVWEMLESFRDAMRQSG 3486245
>gb|CP000542.1| Verminephrobacter eiseniae EF01-2, complete genome
Length = 5566749
Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats.
Identities = 60/105 (57%), Positives = 80/105 (76%)
Frame = +2
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRMEKL +H ++IRPSPS G LGGV + E + + EAA +D+V VETVGVG
Sbjct: 3769982 GSILGDKTRMEKLSMHEQAFIRPSPSSGTLGGVAEKTREAMLVCEAAGYDIVIVETVGVG 3770161
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKND 106
QSE +TDM++L+ P +GD+LQ IKKG++E+AD+V++ K D
Sbjct: 3770162 QSEVAVAGMTDMLVLMQLPNAGDDLQAIKKGVLELADLVLINKAD 3770296
>gb|CP000787.1| Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)' chromosome
II, complete sequence
Length = 277655
Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats.
Identities = 70/166 (42%), Positives = 97/166 (58%), Gaps = 1/166 (0%)
Frame = -1
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRME L N++IRPSPS G LGGV + E + + EAA FD + +ETVGVG
Sbjct: 90458 GSILGDKTRMEILSKSENAFIRPSPSSGSLGGVARKTRESMYLCEAAGFDTIIIETVGVG 90279
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSETQ + D +LL+ +GDELQGIK+GI+E+AD++ + K DG + A + + Y
Sbjct: 90278 QSETQVHSMVDFFLLLMLAGAGDELQGIKRGIMEMADLIAINKADGPNEAYATRARAEYE 90099
Query: 122 RAVMYTEAKQGFEKP-VLAVSAEERTNVPELWEAMMKMWNTRVESG 166
A+ A + P S + E+W ++ T +G
Sbjct: 90098 SALHLFPAPESKWTPRATTCSGLGGKGIDEIWNLVLDYITTTNTNG 89961
Score = 77.0 bits (188), Expect = 2e-12, Method: Composition-based stats.
Identities = 46/154 (29%), Positives = 77/154 (50%), Gaps = 4/154 (2%)
Frame = -3
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGD+TR+ Y R PS LGG+ + V+ FD VF+ETVG+G
Sbjct: 42072 GSILGDRTRVTLPRRDTRIYFRSQPSQLELGGLNPYTYHVIRFLRKI-FDYVFIETVGIG 41896
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKND----GSRKLLAQQTI 117
Q+E ++D+ L++ P GD++Q +K GI+EV + ++ K D + Q+
Sbjct: 41895 QNEISVSLVSDISFLVMQPLGGDQVQFMKSGIMEVPEAFIINKCDEESLANSSFYMLQST 41716
Query: 118 SAYTRAVMYTEAKQGFEKPVLAVSAEERTNVPEL 151
+ + ++ ++ P+ S +R + EL
Sbjct: 41715 LEFIKDILSDQSL----PPIFKTSVTKRKGIEEL 41626
>gb|CP000778.1| Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)' chromosome II,
complete sequence
Length = 277995
Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats.
Identities = 70/166 (42%), Positives = 97/166 (58%), Gaps = 1/166 (0%)
Frame = -1
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRME L N++IRPSPS G LGGV + E + + EAA FD + +ETVGVG
Sbjct: 90429 GSILGDKTRMEILSKSENAFIRPSPSSGSLGGVARKTRESMYLCEAAGFDTIIIETVGVG 90250
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSETQ + D +LL+ +GDELQGIK+GI+E+AD++ + K DG + A + + Y
Sbjct: 90249 QSETQVHSMVDFFLLLMLAGAGDELQGIKRGIMEMADLIAINKADGPNEAYATRARAEYE 90070
Query: 122 RAVMYTEAKQGFEKP-VLAVSAEERTNVPELWEAMMKMWNTRVESG 166
A+ A + P S + E+W ++ T +G
Sbjct: 90069 SALHLFPAPESKWTPRATTCSGLGGKGIDEIWNLVLDYITTTNTNG 89932
Score = 77.0 bits (188), Expect = 2e-12, Method: Composition-based stats.
Identities = 46/154 (29%), Positives = 77/154 (50%), Gaps = 4/154 (2%)
Frame = -3
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGD+TR+ Y R PS LGG+ + V+ FD VF+ETVG+G
Sbjct: 42043 GSILGDRTRVTLPRRDTRIYFRSQPSQLELGGLNPYTYHVIRFLRKI-FDYVFIETVGIG 41867
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKND----GSRKLLAQQTI 117
Q+E ++D+ L++ P GD++Q +K GI+EV + ++ K D + Q+
Sbjct: 41866 QNEISVSLVSDISFLVMQPLGGDQVQFMKSGIMEVPEAFIINKCDEESLANSSFYMLQST 41687
Query: 118 SAYTRAVMYTEAKQGFEKPVLAVSAEERTNVPEL 151
+ + ++ ++ P+ S +R + EL
Sbjct: 41686 LEFIKDILSDQSL----PPIFKTSVTKRKGIEEL 41597
>gb|CP000555.1| Methylibium petroleiphilum PM1, complete genome
Length = 4044195
Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats.
Identities = 74/174 (42%), Positives = 104/174 (59%), Gaps = 9/174 (5%)
Frame = +1
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRME+L + +YIRPSP+ G LGGV + E + + EAA +DVV VETVGVG
Sbjct: 1080196 GSILGDKTRMERLSVDERAYIRPSPASGTLGGVAEKTRESMLVAEAAGYDVVIVETVGVG 1080375
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKND----GSRKLLAQQT- 116
QSE +TDM +LL P +GD+LQ IKKG++E+AD+VV+ K D + + AQ T
Sbjct: 1080376 QSEIAVAGMTDMFVLLQLPNAGDDLQAIKKGVMELADLVVINKADLDEAAATRARAQITS 1080555
Query: 117 ----ISAYTRAVMYTEAKQGFEKPVLAVSAEERTNVPELWEAMMKMWNTRVESG 166
+ + + Q + VL +SA + + E W A+ + + +SG
Sbjct: 1080556 ALRLLGQHGNPMTAHHDAQLWHPQVLQLSALKGVGLAEFWVAVERFRELQTQSG 1080717
Score = 49.3 bits (116), Expect = 4e-04, Method: Composition-based stats.
Identities = 32/108 (29%), Positives = 55/108 (50%), Gaps = 3/108 (2%)
Frame = +3
Query: 2 GSILGDKTRMEKLGI---HPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETV 58
G++LGD+ RM +G P ++R + +++ EVL + A FD+V VET
Sbjct: 955461 GALLGDRIRMNAIGPWSQGPRVFMRSLATRDTGSEISAALPEVLAAAKVAGFDLVIVETS 955640
Query: 59 GVGQSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKND 106
G+GQ + L D+ + ++ P G Q K +++ A+ V + K D
Sbjct: 955641 GIGQGDAAIVPLVDVPMYVMTPEYGAASQLEKIDMLDFAEFVAINKFD 955784
>gb|AE005674.1| Shigella flexneri 2a str. 301, complete genome
Length = 4607203
Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats.
Identities = 71/166 (42%), Positives = 96/166 (57%), Gaps = 1/166 (0%)
Frame = +2
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILG+KTRM L ++IRP PS GHLGG + RA E++ + EAA +DVV VETVG+
Sbjct: 2997542 GSILGEKTRMNDLARAEAAFIRPVPSSGHLGGASQRARELMLLCEAAGYDVVIVETVGIA 2997721
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSET+ + D I L GD+LQGIKKG++EVAD++V+ K+DG Y
Sbjct: 2997722 QSETEVARMVDCFISLQIAGGGDDLQGIKKGLMEVADLLVINKDDGDNHTNVAIARHMYE 2997901
Query: 122 RAVMYTEAKQGFEKPV-LAVSAEERTNVPELWEAMMKMWNTRVESG 166
A+ K +P L SA E+ + E+W A++ SG
Sbjct: 2997902 SALHILRRKYDEWQPRGLTCSALEKRGIDEIWHAIIDFKTALTASG 2998039
>gb|CP000471.1| Magnetococcus sp. MC-1, complete genome
Length = 4719581
Score = 125 bits (314), Expect = 5e-27, Method: Composition-based stats.
Identities = 69/166 (41%), Positives = 101/166 (60%), Gaps = 1/166 (0%)
Frame = -2
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRM +L ++IRPSP+G LGGV E I EAA ++++ +ETVGVG
Sbjct: 450010 GSILGDKTRMARLTGSRQAFIRPSPAGESLGGVARCTRESQLILEAAGYEIILIETVGVG 449831
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSET + D+ +L+ P +GDELQG+K+GI+E+AD+V+V K+DG+ AQ+T
Sbjct: 449830 QSETLVAGMVDLFVLMALPNAGDELQGMKRGIMELADLVLVNKSDGAFVDAAQRTAGGIE 449651
Query: 122 RAV-MYTEAKQGFEKPVLAVSAEERTNVPELWEAMMKMWNTRVESG 166
A+ + G++ V+ +SA E + E+W + SG
Sbjct: 449650 SALRLLHGGSVGWDPEVMTISAAEGRGLAEVWSLFSRFREGMTASG 449513
>gb|CP001010.1| Polynucleobacter necessarius subsp. necessarius STIR1, complete genome
Length = 1560469
Score = 125 bits (314), Expect = 5e-27, Method: Composition-based stats.
Identities = 69/156 (44%), Positives = 97/156 (62%), Gaps = 9/156 (5%)
Frame = -3
Query: 7 DKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVGQSETQ 66
DKTRME+L + N++IRPSPS LGGV + E + + EAA FDV+ VETVGVGQSE
Sbjct: 808274 DKTRMERLSVLENAFIRPSPSSCTLGGVAEKTREAMLVAEAAGFDVIIVETVGVGQSEIA 808095
Query: 67 CKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKN--DGSRKLLAQQTISAYTRAV 124
+TDM +LL P +GD+LQ IKKG++E+AD++V+ K D + AQ I++ R +
Sbjct: 808094 VAGMTDMFLLLQLPNAGDDLQAIKKGVMEIADLIVINKVDIDPDAAMRAQLFITSSLRLL 807915
Query: 125 MYT-------EAKQGFEKPVLAVSAEERTNVPELWE 153
+ K+ + V+ +SA E VP+LWE
Sbjct: 807914 GFQGNPDHAPHDKELWHPQVMTLSALEGNGVPDLWE 807807
>gb|CP000509.1| Nocardioides sp. JS614, complete genome
Length = 4985871
Score = 124 bits (312), Expect = 8e-27, Method: Composition-based stats.
Identities = 65/155 (41%), Positives = 91/155 (58%)
Frame = -2
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GS+LGDKTRM +L ++IRPSPS G LGGV + + + E A +DVV VETVGVG
Sbjct: 3755495 GSVLGDKTRMARLAQDQRAFIRPSPSAGTLGGVARATVQAMGVLEGAGYDVVLVETVGVG 3755316
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSE + D + L +GD+LQGIKKGI+E+AD++ V K DG R+ A+
Sbjct: 3755315 QSEVTVAGMVDTFLFLTLARTGDQLQGIKKGILEIADVIAVNKADGDRQQEARVAARDLA 3755136
Query: 122 RAVMYTEAKQGFEKPVLAVSAEERTNVPELWEAMM 156
A+ + + PV+ SA + V E+W ++
Sbjct: 3755135 GALRLVRGRDEWAPPVVTCSALDDIGVDEVWARVL 3755031
Score = 91.7 bits (226), Expect = 8e-17, Method: Composition-based stats.
Identities = 47/105 (44%), Positives = 65/105 (61%)
Frame = +3
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
G++LGD+ RM+ + + YIR S GHLGG+ + L + +AA DVV VETVGVG
Sbjct: 1911291 GALLGDRVRMQDHALDRDVYIRSMASRGHLGGLAWSTPQALRVLDAAGCDVVLVETVGVG 1911470
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKND 106
QSE + L D ++L+ P GD +Q K GI+E+ D+ VV K D
Sbjct: 1911471 QSEVEIAGLADTTMVLLAPGMGDGIQAAKAGILEIGDLYVVNKAD 1911605
Score = 88.2 bits (217), Expect = 9e-16, Method: Composition-based stats.
Identities = 53/154 (34%), Positives = 81/154 (52%)
Frame = +2
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
G+ILGD+ RM L +IR + G GG++ ++ +++F+AA FD V VETVGVG
Sbjct: 2279270 GAILGDRIRMNALSGDTGIFIRSLATRGATGGLSRAVFDAIKVFDAARFDRVLVETVGVG 2279449
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
Q E + ++++ P GD++Q IK GI+E+AD+ VV K D L I
Sbjct: 2279450 QDEIDVMSVAQTIVVVSVPGLGDDIQAIKAGILEIADVHVVNKADRPGADLTASEIRESL 2279629
Query: 122 RAVMYTEAKQGFEKPVLAVSAEERTNVPELWEAM 155
R + + A + P++ A EL EA+
Sbjct: 2279630 R--LASSAPDSWRPPIIRTVATGGKGFDELREAL 2279725
Score = 82.0 bits (201), Expect = 5e-14, Method: Composition-based stats.
Identities = 58/175 (33%), Positives = 92/175 (52%), Gaps = 10/175 (5%)
Frame = +1
Query: 2 GSILGDKTRMEKLGIHPNS-YIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGV 60
G+ILGD+ R+ + ++R + GHLGG++ +V+ F A + V VETVGV
Sbjct: 844912 GAILGDRVRLRSEHAQDDDVFMRSFSNRGHLGGLSRAVPDVVRAFGACGWSTVIVETVGV 845091
Query: 61 GQSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKND----GS-----RKL 111
GQ E + D +++V P GDE+Q K G++EVAD+++V K D GS R++
Sbjct: 845092 GQVEVEIAGQADTTVVVVNPGWGDEVQANKAGLLEVADVLIVNKADRDGAGSTMRDLRQM 845271
Query: 112 LAQQTISAYTRAVMYTEAKQGFEKPVLAVSAEERTNVPELWEAMMKMWNTRVESG 166
LA +T ++ P +A++A+ V E WEA++ + V SG
Sbjct: 845272 LAMAPDRDWTPPII----------PTVAITAD---GVAEAWEAILGHHDHAVASG 845397
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 30/103 (29%), Positives = 51/103 (49%)
Frame = +1
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
G++LGD+ RM L + + G H + +V+E+ +A FD+V VET G+G
Sbjct: 4375744 GALLGDRIRMNSLDGDRIFFRSLATRGAH--ELPEHLPDVIEVLKAGGFDLVIVETPGIG 4375917
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTK 104
Q + D + ++ P G Q K +++ AD+V + K
Sbjct: 4375918 QGDAGVVPFVDASLYVMTPEFGAASQLEKIDMLDFADVVAINK 4376046
>ref|XM_002192470.1| PREDICTED: Taeniopygia guttata similar to methylmalonic aciduria
(cobalamin deficiency) cblA type (LOC100229940), partial
mRNA
Length = 534
Score = 124 bits (311), Expect = 9e-27, Method: Composition-based stats.
Identities = 63/130 (48%), Positives = 84/130 (64%)
Frame = +1
Query: 7 DKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVGQSETQ 66
DKTRM +L N+YIRPSP+ G LGGVT E + + E +D+V VETVGVGQSE
Sbjct: 142 DKTRMTELSRDMNAYIRPSPTSGTLGGVTRTTNEAILLCEGGGYDIVLVETVGVGQSEFA 321
Query: 67 CKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYTRAVMY 126
D+ DM ILL+PPA GDELQGIK+GI+E+AD+V + K DG + A++ + Y A+
Sbjct: 322 VADMVDMFILLLPPAGGDELQGIKRGIIEMADLVAINKADGDLVVPARRIQAEYISAMKL 501
Query: 127 TEAKQGFEKP 136
+ +P
Sbjct: 502 LHKRSKVWRP 531
>gb|CP001100.1| Chloroherpeton thalassium ATCC 35110, complete genome
Length = 3293456
Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats.
Identities = 72/166 (43%), Positives = 104/166 (62%), Gaps = 1/166 (0%)
Frame = +3
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDK RME L +PN++IRPSPSGG LGGV + E + + EAA +D + +ETVGVG
Sbjct: 1557810 GSILGDKVRMESLATNPNAFIRPSPSGGSLGGVAQKTRETILLCEAAGYDTILIETVGVG 1557989
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSE + D +LL+ +GDELQGIK+GI+E+AD + +TK DG A++ S +
Sbjct: 1557990 QSEVAVHSMVDFFLLLLLAGAGDELQGIKRGIMEMADAIAITKADGENADRARRARSEFE 1558169
Query: 122 RAVMY-TEAKQGFEKPVLAVSAEERTNVPELWEAMMKMWNTRVESG 166
A+ Y A G++ VL SA + + ++W+++ V+ G
Sbjct: 1558170 YAMRYFPTANSGWKPQVLTCSALTKEGLADVWKSIQAHHRLMVDRG 1558307
>emb|AM420293.1| Saccharopolyspora erythraea NRRL2338 complete genome
Length = 8212805
Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats.
Identities = 72/166 (43%), Positives = 96/166 (57%), Gaps = 1/166 (0%)
Frame = +2
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRM KL +++RPSPS G LGGV E + + EAA FDVV VETVGVG
Sbjct: 6338102 GSILGDKTRMPKLASDSGAFVRPSPSAGTLGGVARATRETIVLMEAAGFDVVLVETVGVG 6338281
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSE + D +LL +GD+LQGIKKG++E+AD+V V K DG + A++
Sbjct: 6338282 QSEVAVAGMVDCFLLLTLARTGDQLQGIKKGVLELADLVAVNKADGPHEGEARKAARELR 6338461
Query: 122 RAV-MYTEAKQGFEKPVLAVSAEERTNVPELWEAMMKMWNTRVESG 166
A+ + T + PV+ S + LWE + + T E+G
Sbjct: 6338462 GALRLLTPVSTSWRPPVVTCSGLTGAGLDTLWEQVEQHRATLTETG 6338599
>gb|AY117133.1| Saccharopolyspora erythraea methylmalonyl-CoA mutase operon, partial
sequence
Length = 5894
Score = 122 bits (306), Expect = 4e-26, Method: Composition-based stats.
Identities = 71/166 (42%), Positives = 95/166 (57%), Gaps = 1/166 (0%)
Frame = +1
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRM K +++RPSPS G LGGV E + + EAA FDVV VETVGVG
Sbjct: 4702 GSILGDKTRMPKFASDSGAFVRPSPSAGTLGGVARATRETIVLMEAAGFDVVLVETVGVG 4881
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSE + D +LL +GD+LQGIKKG++E+AD+V V K DG + A++
Sbjct: 4882 QSEVAVAGMVDCFLLLTLARTGDQLQGIKKGVLELADLVAVNKADGPHEGEARKAARELR 5061
Query: 122 RAV-MYTEAKQGFEKPVLAVSAEERTNVPELWEAMMKMWNTRVESG 166
A+ + T + PV+ S + LWE + + T E+G
Sbjct: 5062 GALRLLTPVSTSWRPPVVTCSGLTGAGLDTLWEQVEQHRATLTETG 5199
>gb|CP000431.1| Rhodococcus jostii RHA1, complete genome
Length = 7804765
Score = 122 bits (305), Expect = 5e-26, Method: Composition-based stats.
Identities = 65/157 (41%), Positives = 92/157 (58%), Gaps = 1/157 (0%)
Frame = +2
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRM +L + ++YIRPSP+ G LGGV E + + EAA FDV+ VETVGVG
Sbjct: 7743857 GSILGDKTRMARLTVEKDAYIRPSPTSGTLGGVAKATRETIVLLEAAGFDVILVETVGVG 7744036
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSE ++ D L +GD+LQGIKKG++E+AD+V V K DG + A+
Sbjct: 7744037 QSEVTVANMVDCFCFLTLARTGDQLQGIKKGVLELADLVAVNKADGKHEREAKGAARELA 7744216
Query: 122 RAVMYTEAKQG-FEKPVLAVSAEERTNVPELWEAMMK 157
A+ + PV+ +S E + + W+ + +
Sbjct: 7744217 GALRLIYPHDAVWTPPVITMSGLEGVGLEDFWDTVCR 7744327
>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome
Length = 3147090
Score = 121 bits (303), Expect = 8e-26, Method: Composition-based stats.
Identities = 65/152 (42%), Positives = 91/152 (59%), Gaps = 1/152 (0%)
Frame = -1
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRM L ++IRPSPS G LGGV E + +FEAA +D++ VETVGVG
Sbjct: 1735107 GSILGDKTRMSSLSREDKAFIRPSPSAGTLGGVAKATREAMVVFEAAGYDIIIVETVGVG 1734928
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSE + D+ L +GD+LQGIKKG++E+A++V + K DG+ + A++
Sbjct: 1734927 QSEVAVHQMVDIFTFLALSGAGDQLQGIKKGVLEMAELVAINKADGANEKPAKRAARDLA 1734748
Query: 122 RAV-MYTEAKQGFEKPVLAVSAEERTNVPELW 152
A+ M + + P + +SA E T V W
Sbjct: 1734747 AAMRMVRSPDEIWHPPTITMSAVEGTGVDVFW 1734652
>gb|AE017283.1| Propionibacterium acnes KPA171202, complete genome
Length = 2560265
Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats.
Identities = 66/156 (42%), Positives = 96/156 (61%), Gaps = 1/156 (0%)
Frame = +1
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGD+TRM L +++RPSPSGGHLGGV E + + EAA ++VV VETVGVG
Sbjct: 661756 GSILGDRTRMGDLANRDEAFVRPSPSGGHLGGVARATRESMIVMEAAGYNVVLVETVGVG 661935
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSE + D ++L +GD+LQGIKKGI+E+AD+V V K DG A+ + +
Sbjct: 661936 QSEVAVAGMVDTFLMLSVAGTGDQLQGIKKGILELADVVAVNKADGDNAGNARVSARDLS 662115
Query: 122 RAVMYTEAKQGFEK-PVLAVSAEERTNVPELWEAMM 156
A+ + + PVL S+ + + ++W+A++
Sbjct: 662116 IAMKLVSSDADKRRVPVLTCSSYTKEGLDDVWQAIV 662223
>gb|AF117980.1|AF117980 Amycolatopsis mediterranei methylmalonyl-CoA mutase small subunit
(mcmA) and methylmalonyl-CoA mutase large subunit (mcmB)
genes, complete cds; and unknown genes
Length = 5511
Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats.
Identities = 68/166 (40%), Positives = 95/166 (57%), Gaps = 1/166 (0%)
Frame = +1
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGDKTRM +L IRPSP+ G LGGV E + + EAA +D+V VETVGVG
Sbjct: 4417 GSILGDKTRMARLAWTNARSIRPSPTSGTLGGVARATRETIVLMEAAGYDIVLVETVGVG 4596
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSE ++ D + L +GD+LQGIKKG++E+AD++ V K DG + A++
Sbjct: 4597 QSEVTVANMVDCFLFLTLARTGDQLQGIKKGVLELADVIAVNKADGDHERDARRAARELA 4776
Query: 122 RAV-MYTEAKQGFEKPVLAVSAEERTNVPELWEAMMKMWNTRVESG 166
A+ M + + PVL S + E+W A+ + +T SG
Sbjct: 4777 GALRMIYGPEASWTPPVLTCSGLHNLRLDEVWGAIEQHRDTLTASG 4914
>ref|XM_002155320.1| PREDICTED: Hydra magnipapillata similar to predicted protein
(LOC100207183), partial mRNA
Length = 646
Score = 111 bits (278), Expect = 7e-23, Method: Composition-based stats.
Identities = 61/142 (42%), Positives = 86/142 (60%), Gaps = 1/142 (0%)
Frame = +1
Query: 24 PSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVGQSETQCKDLTDMMILLVPPASG 83
PSP+ G LGGV + E + + EAA +D++ VETVG+GQSE D+ DM +L++PPASG
Sbjct: 1 PSPTAGTLGGVARKTNEAIILCEAAGYDIILVETVGIGQSEVAVGDMVDMFVLVIPPASG 180
Query: 84 DELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYTRAVMYTEAKQGFEKP-VLAVSA 142
DELQGIKKGIVE+ D+V+V K DG A++ S YT A+ + P V +VS+
Sbjct: 181 DELQGIKKGIVEMVDLVLVNKADGDLLPAARRIQSEYTSALKLLSRQSDIWHPKVHSVSS 360
Query: 143 EERTNVPELWEAMMKMWNTRVE 164
+W M + N ++
Sbjct: 361 LLDEGFGIVWAEMTEFKNIMLQ 426
>dbj|AP008230.1| Desulfitobacterium hafniense Y51 DNA, complete genome
Length = 5727534
Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats.
Identities = 61/165 (36%), Positives = 94/165 (56%)
Frame = +2
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
G+ILGD+ RM+ G P +IR + GHLGGV +VL+I EAA ++ + +ETVGVG
Sbjct: 1817024 GAILGDRIRMQSHGTDPGVFIRSMGTRGHLGGVARFTTDVLKILEAAGYERLLLETVGVG 1817203
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSE + + D ++L++ P +GD +Q IK GI+E+AD+ VV K D L + +
Sbjct: 1817204 QSELEIMECADTVLLVLNPGTGDGIQAIKAGIMEIADIFVVNKAD----LPGAERLKNDI 1817371
Query: 122 RAVMYTEAKQGFEKPVLAVSAEERTNVPELWEAMMKMWNTRVESG 166
V+ K+ + PV+ S E+ + EL + + + ESG
Sbjct: 1817372 EMVLDLNGKKAWRAPVVMTSTLEQRGLNELRDHIARHQTFLTESG 1817506
>gb|AE008691.1| Thermoanaerobacter tengcongensis MB4, complete genome
Length = 2689445
Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats.
Identities = 61/167 (36%), Positives = 96/167 (57%), Gaps = 2/167 (1%)
Frame = -1
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGD+ RM+ L HPN YIR + GHLGG++ + + I + A D VFVETVGVG
Sbjct: 2275226 GSILGDRIRMQDLTTHPNVYIRSMGTRGHLGGLSKGTYMAVRILDIAGMDYVFVETVGVG 2275047
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKND--GSRKLLAQQTISA 119
QSE + D +++++ P GD++Q IK GI+E+AD+ VV K+D G+ K + + +
Sbjct: 2275046 QSEVDIIKIADTVVMVLAPGLGDDIQAIKAGIMEIADVFVVNKSDREGADKTVLELNM-- 2274873
Query: 120 YTRAVMYTEAKQGFEKPVLAVSAEERTNVPELWEAMMKMWNTRVESG 166
++ + + + PV+ A+E + E+ E + + SG
Sbjct: 2274872 ----MLDLDMPKEWRPPVVKAVAQEGKGIGEVLEKIHSHKEYLISSG 2274744
>gb|CP001336.1| Desulfitobacterium hafniense DCB-2, complete genome
Length = 5279134
Score = 105 bits (261), Expect = 6e-21, Method: Composition-based stats.
Identities = 60/165 (36%), Positives = 94/165 (56%)
Frame = +1
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
G+ILGD+ RM+ G P +IR + GHLGGV +VL+I EAA ++ + +ETVGVG
Sbjct: 2895862 GAILGDRIRMQSHGTDPGVFIRSMGTRGHLGGVARFTTDVLKILEAAGYERLLLETVGVG 2896041
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSE + + + ++L++ P +GD +Q IK GI+E+AD+ VV K D L + +
Sbjct: 2896042 QSELEIMECANTVLLVLNPGTGDGIQAIKAGIMEIADIFVVNKAD----LPGAERLKNDI 2896209
Query: 122 RAVMYTEAKQGFEKPVLAVSAEERTNVPELWEAMMKMWNTRVESG 166
V+ K+ + PV+ S E+ + EL + + + ESG
Sbjct: 2896210 EMVLDLNGKKAWRAPVVMTSTLEQRGLNELRDHIARHQTFLTESG 2896344
>gb|CP000812.1| Thermotoga lettingae TMO, complete genome
Length = 2135342
Score = 102 bits (255), Expect = 3e-20, Method: Composition-based stats.
Identities = 54/158 (34%), Positives = 92/158 (58%)
Frame = +3
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
G+ LGD+ RM + +IR S G LGG++ ++V+ + EAA FD +F+ETVG+G
Sbjct: 722328 GAFLGDRIRMRDHFLDDGVFIRSLASRGALGGLSDSTFDVVNLLEAAGFDYIFIETVGIG 722507
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
Q+E + +L D+++L++ P GD++Q +K G++E+AD+ V+ K D L T+ +
Sbjct: 722508 QAEVEISNLADIVVLVLSPGLGDDVQMMKAGVMEIADLYVINKAD----LSESDTLCSQL 722675
Query: 122 RAVMYTEAKQGFEKPVLAVSAEERTNVPELWEAMMKMW 159
+ + +Q E V+ SA + EL+ M K+W
Sbjct: 722676 LSFLSLSNEQKDESRVIKTSASNGEGISELFSRMNKLW 722789
>gb|AY830773.1| Oryctolagus cuniculus methylmalonic aciduria type A (MMAA) mRNA,
complete cds
Length = 1349
Score = 80.5 bits (197), Expect(2) = 2e-19, Method: Composition-based stats.
Identities = 37/73 (50%), Positives = 50/73 (68%)
Frame = +2
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GS+LGDKTRM + N+YIRPSP+ G+LGGV EV+ + E A +D++ +ETVGVG
Sbjct: 605 GSLLGDKTRMTEFSRDMNAYIRPSPTRGNLGGVPRTTNEVILLCEGAGYDIILIETVGVG 784
Query: 62 QSETQCKDLTDMM 74
QSE D D++
Sbjct: 785 QSEFAVADTVDIL 823
Score = 40.0 bits (92), Expect(2) = 2e-19, Method: Composition-based stats.
Identities = 17/23 (73%), Positives = 21/23 (91%)
Frame = +1
Query: 75 ILLVPPASGDELQGIKKGIVEVA 97
+LL+PPA GDELQGIK+GI E+A
Sbjct: 823 VLLLPPAGGDELQGIKRGIFEMA 891
>gb|CP000667.1| Salinispora tropica CNB-440, complete genome
Length = 5183331
Score = 99.8 bits (247), Expect = 3e-19, Method: Composition-based stats.
Identities = 49/105 (46%), Positives = 68/105 (64%)
Frame = -1
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
G+ILGD+ RM+ I P YIR S GHLGG+++ + + + E A DVV VETVGVG
Sbjct: 4133874 GAILGDRVRMQDHAIDPGVYIRSMSSRGHLGGLSAATPQAVRVLEGAGCDVVLVETVGVG 4133695
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKND 106
Q+E + L D ++L+ P GD +Q +K GI+E+AD+ VV K D
Sbjct: 4133694 QAEVEVASLADTTLVLLAPGMGDAIQAVKAGILEIADVFVVNKAD 4133560
>gb|CP001145.1| Coprothermobacter proteolyticus DSM 5265, complete genome
Length = 1424912
Score = 99.8 bits (247), Expect = 3e-19, Method: Composition-based stats.
Identities = 58/165 (35%), Positives = 95/165 (57%), Gaps = 1/165 (0%)
Frame = -3
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
G++LGD+ R++ L + N + R + G LGG++ E ++I E A FD +F+ETVG+G
Sbjct: 825297 GALLGDRIRLQHLFPNENLFFRSFANKGALGGLSPILMESVKILEVAGFDYIFLETVGIG 825118
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSE D+++L++ P GDE+Q +K GI+E+AD++V+ K D ++ + AY
Sbjct: 825117 QSEVDITHFADVVVLVLSPGLGDEIQFLKGGIMEIADILVMNKMDMPSANISLAALEAYA 824938
Query: 122 RAVMYTEAKQGFEKP-VLAVSAEERTNVPELWEAMMKMWNTRVES 165
R + E P V+ VSA ER N+ L + K + + E+
Sbjct: 824937 RLLD--------EPPTVVPVSAIERRNIDVLLSKIDKCYEKKQET 824827
>ref|XM_001749558.1| Monosiga brevicollis MX1 predicted protein MONBRDRAFT_29095 mRNA,
complete cds
Length = 1197
Score = 97.8 bits (242), Expect = 9e-19, Method: Composition-based stats.
Identities = 70/203 (34%), Positives = 101/203 (49%), Gaps = 38/203 (18%)
Frame = +1
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSP---------------------SGGHLGGVTSRAWE 40
GSILGDKTRM L HP++Y+RPSP S + + +
Sbjct: 397 GSILGDKTRMPVLSAHPDAYVRPSPSSGSLGLSLPSSLAYLLWYRCSFRMIQLLARNTTD 576
Query: 41 VLEIFEAANFDVVFVETVGVGQSETQCKDLTDMMILLVPPASGDEL-------------- 86
+ + EA DVV VETVGVGQSE D+ DM ILL+PPA GDEL
Sbjct: 577 AIVLCEAFGADVVLVETVGVGQSEVAVADMVDMFILLLPPAGGDELQAAFDQNGVLHMLS 756
Query: 87 --QGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYTRAVMYTEAK-QGFEKPVLAVSAE 143
QGIK+GI+EV+D++++ K DG A + + A+ K + ++ V+A SA
Sbjct: 757 NRQGIKRGIMEVSDLIIINKADGDLTQAAHRARVEHQNALHLMRRKSRNWDPEVVATSAL 936
Query: 144 ERTNVPELWEAMMKMWNTRVESG 166
E + E+ + + ++ + SG
Sbjct: 937 EHRGISEVKDVIDSFYDAMMASG 1005
>gb|CP000850.1| Salinispora arenicola CNS-205, complete genome
Length = 5786361
Score = 97.8 bits (242), Expect = 1e-18, Method: Composition-based stats.
Identities = 48/105 (45%), Positives = 67/105 (63%)
Frame = -2
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
G+ILGD+ RM+ P YIR S GHLGG+++ + + + E A DVV VETVGVG
Sbjct: 4539572 GAILGDRVRMQDHATDPGVYIRSMSSRGHLGGLSAATPQAVRVLEGAGCDVVLVETVGVG 4539393
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKND 106
Q+E + L D ++L+ P GD +Q +K GI+E+AD+ VV K D
Sbjct: 4539392 QAEVEVASLADTTLVLLAPGMGDAIQAVKAGILEIADVFVVNKAD 4539258
>gb|CP001151.1| Rhodobacter sphaeroides KD131 chromosome 2, complete sequence
Length = 1297647
Score = 96.3 bits (238), Expect = 3e-18, Method: Composition-based stats.
Identities = 52/150 (34%), Positives = 84/150 (56%)
Frame = +3
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGD+ RM L + PN +IR + G +GG+ A +V++I + A FD + +ETVGVG
Sbjct: 13398 GSILGDRIRMSDLVLDPNVFIRSMATRGAVGGMAHAALDVVDILDLAGFDRIIIETVGVG 13577
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
Q E + + +++ P GDE+Q IK GI+E+AD+ VV+K D S +
Sbjct: 13578 QDEVEIAKASHTTVVVSAPGLGDEIQAIKAGILEIADLHVVSKCDRSDANRTLTDLKTML 13757
Query: 122 RAVMYTEAKQGFEKPVLAVSAEERTNVPEL 151
+ + + +G+ PV+ S+ + +L
Sbjct: 13758 KDGLGSALTRGWLPPVIGTSSYDDQGFEDL 13847
>gb|CP000578.1| Rhodobacter sphaeroides ATCC 17029 chromosome 2, complete sequence
Length = 1219053
Score = 95.9 bits (237), Expect = 4e-18, Method: Composition-based stats.
Identities = 52/150 (34%), Positives = 84/150 (56%)
Frame = +1
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGD+ RM L + PN +IR + G +GG+ A +V++I + A FD + +ETVGVG
Sbjct: 757549 GSILGDRIRMSDLVLDPNVFIRSMATRGAVGGMAHAALDVVDILDLAGFDRIIIETVGVG 757728
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
Q E + + +++ P GDE+Q IK GI+E+AD+ VV+K D S +
Sbjct: 757729 QDEVEIAKASHTTVVVSAPGLGDEIQAIKAGILEIADLHVVSKCDRSDANRTLTDLKTML 757908
Query: 122 RAVMYTEAKQGFEKPVLAVSAEERTNVPEL 151
+ + + +G+ PV+ S+ + +L
Sbjct: 757909 KDGLGSALTRGWLPPVIGTSSYDDQGFEDL 757998
>gb|CP001185.1| Thermosipho africanus TCF52B, complete genome
Length = 2016657
Score = 95.1 bits (235), Expect = 7e-18, Method: Composition-based stats.
Identities = 55/167 (32%), Positives = 93/167 (55%), Gaps = 2/167 (1%)
Frame = -3
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
G+ LGD+ RM+K + +IR SG LGG+ ++V+++ +A FD + +ETVG G
Sbjct: 1433074 GAFLGDRIRMKKHFLDDGVFIRSMGSGNSLGGLNESIFDVIKLMDAFGFDYILIETVGAG 1432895
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKN--DGSRKLLAQQTISA 119
QSE +D++IL++ P +GDE+Q +K GI+E+ D+ V+ K DG+ L Q
Sbjct: 1432894 QSEIDIVFASDVVILVLSPGNGDEIQLLKAGIMEIGDIYVINKADLDGANSLKVQ----- 1432730
Query: 120 YTRAVMYTEAKQGFEKPVLAVSAEERTNVPELWEAMMKMWNTRVESG 166
+ YT + +KP++ A V +L E++ +N ++G
Sbjct: 1432729 ----LEYTLSFSNVKKPIIETIATSGVGVEKLVESINDCFNNFSKNG 1432601
>gb|CP000782.1| Xanthobacter autotrophicus Py2 plasmid pXAUT01, complete sequence
Length = 316164
Score = 94.7 bits (234), Expect = 8e-18, Method: Composition-based stats.
Identities = 46/107 (42%), Positives = 67/107 (62%)
Frame = +1
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GSILGD+ RM +LG+ P YIR + G GG+ A + +++ + FD V +ETVGVG
Sbjct: 238750 GSILGDRVRMNELGMDPGVYIRSMATRGATGGMARAALDAVDVLDVGGFDTVIIETVGVG 238929
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGS 108
Q E + + +++ P GDE+Q IK GI+E+AD+ VV+K D S
Sbjct: 238930 QDEVEIARASHTTVVVSAPGLGDEIQAIKAGILEIADIHVVSKCDRS 239070
Score = 90.9 bits (224), Expect = 1e-16, Method: Composition-based stats.
Identities = 56/154 (36%), Positives = 88/154 (57%)
Frame = -3
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
G++LGD+ RM + P +IR S GHLGG++ V+++ +AA D + +ETVG G
Sbjct: 261871 GAVLGDRIRMGRHTDDPGVFIRSIASRGHLGGLSRSIHHVVDVLDAAGRDAIVIETVGAG 261692
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSE + D+ + I++ P GD++Q IK GI+E+A ++VV K D LA +T+
Sbjct: 261691 QSEVEIVDVAAVRIVVNAPGLGDDVQAIKAGILEIASILVVNKADLP---LAPRTVRQL- 261524
Query: 122 RAVMYTEAKQGFEKPVLAVSAEERTNVPELWEAM 155
+A++ + + PVL A E V EL A+
Sbjct: 261523 KAMLSLRREGEADVPVLETIASEDRGVAELLAAV 261422
>dbj|AK160235.1| Mus musculus 10, 11 days embryo whole body cDNA, RIKEN full-length
enriched library, clone:2810018E08 product:methylmalonic
aciduria (cobalamin deficiency) type A, full insert
sequence
Length = 1686
Score = 94.4 bits (233), Expect = 1e-17, Method: Composition-based stats.
Identities = 47/91 (51%), Positives = 61/91 (67%)
Frame = +1
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
GS+LGDKTRM +L N+YIRPSP+ G LGGVT E + + E +D++ +ETVGVG
Sbjct: 970 GSLLGDKTRMIELSRDMNAYIRPSPTSGTLGGVTRTTNEAIVLCEGGGYDIILIETVGVG 1149
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKG 92
QSE D+ DM +LL+PPA G G +KG
Sbjct: 1150 QSEFAVADMVDMFVLLLPPAGGG*TAGHQKG 1242
Score = 58.9 bits (141), Expect = 5e-07, Method: Composition-based stats.
Identities = 31/85 (36%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Frame = +2
Query: 83 GDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYTRAVMYTEAKQGFEKP-VLAVS 141
GDELQGIK+GI+E+AD+VV+TK+DG + A++ + Y A+ + +P V+ +S
Sbjct: 1214 GDELQGIKRGIIEMADLVVITKSDGDLIVPARRIQAEYVSALKLLRRRSEVWRPKVIRIS 1393
Query: 142 AEERTNVPELWEAMMKMWNTRVESG 166
A + E+W+ M + + + SG
Sbjct: 1394 ARSGEGITEMWDTMREFQHQMLASG 1468
>gb|CP000724.1| Alkaliphilus metalliredigens QYMF, complete genome
Length = 4929566
Score = 94.4 bits (233), Expect = 1e-17, Method: Composition-based stats.
Identities = 56/165 (33%), Positives = 88/165 (53%)
Frame = -2
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
G+ILGD+ RM L P +IR + GHLGG++ ++I +A D + +ETVGVG
Sbjct: 4651780 GAILGDRIRMSDLYTDPGVFIRSMGTRGHLGGISRATQSAIKILDAYGVDFIIIETVGVG 4651601
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSE D +++++ P GD++Q IK GI+E+ D+ + K D R+ + + I
Sbjct: 4651600 QSEVDIVKTADTVLMVMVPGLGDDIQAIKAGIMEIGDVFAINKAD--REGVERTRIEI-- 4651433
Query: 122 RAVMYTEAKQGFEKPVLAVSAEERTNVPELWEAMMKMWNTRVESG 166
+M + PV V A E + + L E++ K + VESG
Sbjct: 4651432 -EMMLDFNHLDWRPPVHQVIATENSGIDSLMESLEKHYQYLVESG 4651301
>gb|EU016671.1| Uncultured marine microorganism HF4000_APKG10K24 fosmid sequence
Length = 36357
Score = 93.2 bits (230), Expect = 2e-17, Method: Composition-based stats.
Identities = 50/165 (30%), Positives = 90/165 (54%)
Frame = -1
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
G++LGD+ RM++ + P +IR + G GG+ + + +A+ DV+ VETVGVG
Sbjct: 1143 GALLGDRVRMQRHYLDPGVFIRSIATRGQAGGLPRTVRGITRLLDASGIDVILVETVGVG 964
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
Q+E ++ D +++++ P SGD +Q +K GI+E+AD+ +V K D A Q + T
Sbjct: 963 QTELGVLEVADTVLVVLMPESGDAIQALKAGIMEIADIYLVNKADRDG---ANQMATNIT 793
Query: 122 RAVMYTEAKQGFEKPVLAVSAEERTNVPELWEAMMKMWNTRVESG 166
+ + + PV+ +A+ + E+WE + + +SG
Sbjct: 792 SMLQLGHNRTDWAPPVMLTTAQSGQGIDEVWEKIQEHKQHLTDSG 658
>gb|CP001034.1| Natranaerobius thermophilus JW/NM-WN-LF, complete genome
Length = 3165557
Score = 92.4 bits (228), Expect = 5e-17, Method: Composition-based stats.
Identities = 48/115 (41%), Positives = 73/115 (63%), Gaps = 2/115 (1%)
Frame = +3
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
G+ILGD+ RM+ + YIR S G LGGV+ E + I +A+ FD++ +ETVGVG
Sbjct: 1338609 GAILGDRVRMQDHSLDKGVYIRSMASRGSLGGVSVSTREAVAILDASGFDIIIIETVGVG 1338788
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKND--GSRKLLAQ 114
QSE + + D + +++ P SGD +Q +K GI+EV D+ V+ K D G+ K+L +
Sbjct: 1338789 QSEVEVIQIADTVSVVLTPNSGDSIQTMKAGIMEVGDIFVINKLDLPGADKILRE 1338953
>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome
Length = 1849742
Score = 91.7 bits (226), Expect = 7e-17, Method: Composition-based stats.
Identities = 62/168 (36%), Positives = 86/168 (51%), Gaps = 3/168 (1%)
Frame = -1
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
G+ILGD+ RM + P YIR S G LGG+ L + EA FD +FVETVGVG
Sbjct: 134003 GAILGDRIRMMRHHQDPGVYIRSMASRGALGGLAGATVAALSLLEAFGFDRIFVETVGVG 133824
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKND---GSRKLLAQQTIS 118
QSE + D +L++ PA+GD +Q K G++E+AD+ V K D G R + Q+ S
Sbjct: 133823 QSEVDIARVADTTLLVLTPAAGDAVQAFKAGVMEIADVFAVNKFDLPGGER--IVQELKS 133650
Query: 119 AYTRAVMYTEAKQGFEKPVLAVSAEERTNVPELWEAMMKMWNTRVESG 166
A + + P +A S E V L+E++ VE G
Sbjct: 133649 ALELSPPRPGGWRPPIHPTVAASGE---GVEALFESLEAHHRHLVEHG 133515
>gb|CP000875.1| Herpetosiphon aurantiacus ATCC 23779, complete genome
Length = 6346587
Score = 91.7 bits (226), Expect = 7e-17, Method: Composition-based stats.
Identities = 53/151 (35%), Positives = 85/151 (56%), Gaps = 2/151 (1%)
Frame = +1
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
G+ILGD+ RM+ LG YIR S G LGG++ + ++ +AA FD+V VETVG G
Sbjct: 5087248 GAILGDRIRMQALGGDSGCYIRSMASRGSLGGLSRATGDAVKALDAAGFDIVIVETVGAG 5087427
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKND--GSRKLLAQQTISA 119
Q+E + ++++ P GD++Q IK GI+E+AD+ VV K D G + + Q +
Sbjct: 5087428 QAEVEIAREAHTVVVVEVPGMGDDIQAIKAGILEIADVFVVNKADREGVERTVRQLQMML 5087607
Query: 120 YTRAVMYTEAKQGFEKPVLAVSAEERTNVPE 150
+ + E + G+E P++ + N+ E
Sbjct: 5087608 HLGS---GEHRDGWEPPIVQTVSNTGKNIAE 5087691
>gb|CP000879.1| Petrotoga mobilis SJ95, complete genome
Length = 2169548
Score = 91.7 bits (226), Expect = 7e-17, Method: Composition-based stats.
Identities = 54/156 (34%), Positives = 82/156 (52%), Gaps = 4/156 (2%)
Frame = +3
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
G+ LGD+ RM L N YIR S G +GGV + ++++++ +A FD + +ETVG G
Sbjct: 606249 GAFLGDRVRMFDLTNASNVYIRSIASRGAMGGVCNSIYDIIDVMKAFGFDTIIIETVGTG 606428
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKNDGSRKLLAQQTISAYT 121
QSE D +L++ P SGDE+Q K GI+E+AD +V K D +
Sbjct: 606429 QSEIDIFYACDTTLLILSPDSGDEIQIYKAGIMEIADCYIVNKID----------LPNSK 606578
Query: 122 RAVMYTE----AKQGFEKPVLAVSAEERTNVPELWE 153
R +MY E ++ K V VS+ E +++E
Sbjct: 606579 RFLMYLENYLDSRNEDHKKVFGVSSIENKGFEKVYE 606686
>gb|AE017221.1| Thermus thermophilus HB27, complete genome
Length = 1894877
Score = 91.7 bits (226), Expect = 8e-17, Method: Composition-based stats.
Identities = 62/168 (36%), Positives = 86/168 (51%), Gaps = 3/168 (1%)
Frame = +1
Query: 2 GSILGDKTRMEKLGIHPNSYIRPSPSGGHLGGVTSRAWEVLEIFEAANFDVVFVETVGVG 61
G+ILGD+ RM + P YIR S G LGG+ L + EA FD +FVETVGVG
Sbjct: 1763905 GAILGDRIRMMRHHQDPGVYIRSMASRGALGGLAGATVAALSLLEAFGFDRIFVETVGVG 1764084
Query: 62 QSETQCKDLTDMMILLVPPASGDELQGIKKGIVEVADMVVVTKND---GSRKLLAQQTIS 118
QSE + D +L++ PA+GD +Q K G++E+AD+ V K D G R + Q+ S
Sbjct: 1764085 QSEVDIARVADTTLLVLTPAAGDAVQAFKAGVMEIADVFAVNKFDLPGGER--IVQELKS 1764258
Query: 119 AYTRAVMYTEAKQGFEKPVLAVSAEERTNVPELWEAMMKMWNTRVESG 166
A + + P +A S E V L+E++ VE G
Sbjct: 1764259 ALELSPPRPGGWRPPIHPTVAASGE---GVEALFESLEAHHRHLVEHG 1764393
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.315 0.131 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 450076302
Number of extensions: 5246069
Number of successful extensions: 30732
Number of sequences better than 10: 46
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 30715
Number of HSP's successfully gapped: 67
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 16 (7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 78 (34.7 bits)
Query= gi|154331742|ref|NC_009296.1|:subseq(176686,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 3
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
ref|XM_001561591.1| Leishmania braziliensis MHOM/BR/75/M2904 kin... 103 2e-20
emb|AM494940.1| Leishmania braziliensis chromosome 3 103 2e-20
ref|XM_001467501.1| Leishmania infantum JPCM5 kinase like protei... 67 2e-09
emb|AM502249.1| Leishmania infantum chromosome 31 67 2e-09
ref|XM_001687303.1| Leishmania major kinase-like protein (LmjF03... 61 2e-07
gb|AC125735.1| Leishmania major strain Friedlin chromosome 3, co... 61 2e-07
>ref|XM_001561591.1| Leishmania braziliensis MHOM/BR/75/M2904 kinase-like protein
(LbrM03_V2.0510) partial mRNA
Length = 1062
Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats.
Identities = 100/166 (60%), Positives = 100/166 (60%)
Frame = +2
Query: 1 TAASSVTRPAWRSWASTRTRTSVHRHPGGTSAAUPRVRGRCWXXXXXXXXXXXXXXXXXX 60
TAASSVTRPAWRSWASTRTRTSVHRHPGGTSAA PRVRGRCW
Sbjct: 314 TAASSVTRPAWRSWASTRTRTSVHRHPGGTSAA*PRVRGRCWRSSRLQTLTLSSSRLSVL 493
Query: 61 XXXXXXXKTSQIXXXXXCRPPAVMNSRVSRRALSRWQTWSLSPRMTAAASCWHXXXXXXX 120
KTSQI CRPPAVMNSRVSRRALSRWQTWSLSPRMTAAASCWH
Sbjct: 494 ARARRSAKTSQI**SSSCRPPAVMNSRVSRRALSRWQTWSLSPRMTAAASCWHSKPSPPT 673
Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXTCRSYGKRUURCGTRASRAA 166
TCRSYGKR RCGTRASRAA
Sbjct: 674 PAPSCTRRRSRASRSRSSPSPLRRGRTCRSYGKR**RCGTRASRAA 811
>emb|AM494940.1| Leishmania braziliensis chromosome 3
Length = 388728
Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats.
Identities = 100/166 (60%), Positives = 100/166 (60%)
Frame = +1
Query: 1 TAASSVTRPAWRSWASTRTRTSVHRHPGGTSAAUPRVRGRCWXXXXXXXXXXXXXXXXXX 60
TAASSVTRPAWRSWASTRTRTSVHRHPGGTSAA PRVRGRCW
Sbjct: 176689 TAASSVTRPAWRSWASTRTRTSVHRHPGGTSAA*PRVRGRCWRSSRLQTLTLSSSRLSVL 176868
Query: 61 XXXXXXXKTSQIXXXXXCRPPAVMNSRVSRRALSRWQTWSLSPRMTAAASCWHXXXXXXX 120
KTSQI CRPPAVMNSRVSRRALSRWQTWSLSPRMTAAASCWH
Sbjct: 176869 ARARRSAKTSQI**SSSCRPPAVMNSRVSRRALSRWQTWSLSPRMTAAASCWHSKPSPPT 177048
Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXTCRSYGKRUURCGTRASRAA 166
TCRSYGKR RCGTRASRAA
Sbjct: 177049 PAPSCTRRRSRASRSRSSPSPLRRGRTCRSYGKR**RCGTRASRAA 177186
>ref|XM_001467501.1| Leishmania infantum JPCM5 kinase like protein (LinJ31.2800) partial
mRNA
Length = 1050
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 61/112 (54%), Positives = 67/112 (59%)
Frame = +2
Query: 1 TAASSVTRPAWRSWASTRTRTSVHRHPGGTSAAUPRVRGRCWXXXXXXXXXXXXXXXXXX 60
TAASSVTRPAWRS A T TRTSVHRHP GTSAA PRV GRCW
Sbjct: 317 TAASSVTRPAWRSLART*TRTSVHRHPVGTSAASPRVHGRCWRSSRPRASTSSLSRPSAL 496
Query: 61 XXXXXXXKTSQIXXXXXCRPPAVMNSRVSRRALSRWQTWSLSPRMTAAASCW 112
+TS+I CRPPA M+ R SR+A SRW+TWSLS + A AS W
Sbjct: 497 ARARHSARTSRI**SSSCRPPAGMSFRASRKASSRWRTWSLSRKTMADASPW 652
>emb|AM502249.1| Leishmania infantum chromosome 31
Length = 1744348
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 61/112 (54%), Positives = 67/112 (59%)
Frame = -2
Query: 1 TAASSVTRPAWRSWASTRTRTSVHRHPGGTSAAUPRVRGRCWXXXXXXXXXXXXXXXXXX 60
TAASSVTRPAWRS A T TRTSVHRHP GTSAA PRV GRCW
Sbjct: 1313022 TAASSVTRPAWRSLART*TRTSVHRHPVGTSAASPRVHGRCWRSSRPRASTSSLSRPSAL 1312843
Query: 61 XXXXXXXKTSQIXXXXXCRPPAVMNSRVSRRALSRWQTWSLSPRMTAAASCW 112
+TS+I CRPPA M+ R SR+A SRW+TWSLS + A AS W
Sbjct: 1312842 ARARHSARTSRI**SSSCRPPAGMSFRASRKASSRWRTWSLSRKTMADASPW 1312687
>ref|XM_001687303.1| Leishmania major kinase-like protein (LmjF03.0610) mRNA, complete
cds
Length = 1050
Score = 60.8 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 58/112 (51%), Positives = 64/112 (57%)
Frame = +2
Query: 1 TAASSVTRPAWRSWASTRTRTSVHRHPGGTSAAUPRVRGRCWXXXXXXXXXXXXXXXXXX 60
TAA SVTRPAWRS A T TRTSVHRHP GTSAA PR RGR W
Sbjct: 317 TAAFSVTRPAWRSLART*TRTSVHRHPAGTSAASPRARGRRWKSSRPRGSTSSLSRPSAL 496
Query: 61 XXXXXXXKTSQIXXXXXCRPPAVMNSRVSRRALSRWQTWSLSPRMTAAASCW 112
+TS+I CRPPA M+ R SR+ SRW+TWSLS + A AS W
Sbjct: 497 ARARRSARTSRI**SSSCRPPAGMSCRASRKVSSRWRTWSLSRKTMADASPW 652
>gb|AC125735.1| Leishmania major strain Friedlin chromosome 3, complete sequence
Length = 384518
Score = 60.8 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 58/112 (51%), Positives = 64/112 (57%)
Frame = +3
Query: 1 TAASSVTRPAWRSWASTRTRTSVHRHPGGTSAAUPRVRGRCWXXXXXXXXXXXXXXXXXX 60
TAA SVTRPAWRS A T TRTSVHRHP GTSAA PR RGR W
Sbjct: 226788 TAAFSVTRPAWRSLART*TRTSVHRHPAGTSAASPRARGRRWKSSRPRGSTSSLSRPSAL 226967
Query: 61 XXXXXXXKTSQIXXXXXCRPPAVMNSRVSRRALSRWQTWSLSPRMTAAASCW 112
+TS+I CRPPA M+ R SR+ SRW+TWSLS + A AS W
Sbjct: 226968 ARARRSARTSRI**SSSCRPPAGMSCRASRKVSSRWRTWSLSRKTMADASPW 227123
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.321 0.122 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 472879592
Number of extensions: 5276491
Number of successful extensions: 90318
Number of sequences better than 10: 3
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 90205
Number of HSP's successfully gapped: 4
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 16 (7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.0 bits)
S2: 78 (34.7 bits)
Query= gi|154331742|ref|NC_009296.1|:subseq(217516,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 3
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
ref|XM_001561599.1| Leishmania braziliensis MHOM/BR/75/M2904 hyp... 197 9e-49
emb|AM494940.1| Leishmania braziliensis chromosome 3 197 9e-49
ref|XM_001462762.1| Leishmania infantum hypothetical protein, co... 135 5e-30
emb|AM502221.1| Leishmania infantum chromosome 3 135 5e-30
ref|XM_001687311.1| Leishmania major hypothetical protein, conse... 127 2e-27
gb|AC125735.1| Leishmania major strain Friedlin chromosome 3, co... 127 2e-27
ref|XM_838760.1| Trypanosoma brucei ATP-dependent DEAD/H RNA hel... 65 6e-09
gb|AC091330.18| Trypanosoma brucei chromosome 3 clone RPCI93-48O... 65 6e-09
ref|XM_817001.1| Trypanosoma cruzi strain CL Brener hypothetical... 58 1e-06
>ref|XM_001561599.1| Leishmania braziliensis MHOM/BR/75/M2904 hypothetical protein,
conserved (LbrM03_V2.0590) partial mRNA
Length = 6624
Score = 197 bits (501), Expect = 9e-49, Method: Composition-based stats.
Identities = 117/152 (76%), Positives = 117/152 (76%)
Frame = -1
Query: 1 RLQRAVHXXXXXXXXXXXXXXXXXXXXXVVHNIEQLPLPPIRVEENAVVLRWNRRPLQEV 60
RLQRAVH VVHNIEQLPLPPIRVEENAVVLRWNRRPLQEV
Sbjct: 3360 RLQRAVHAVVRDERLARRRRRTHDGAAAVVHNIEQLPLPPIRVEENAVVLRWNRRPLQEV 3181
Query: 61 AHVHELHHFWRVNAGLLPWAVARRQGGDGAVLPLGDRRVHLFVIRGREVEVREGGAHQVE 120
AHVHELHHFWRVNAGLLPWAVARRQGGDGAVLPLGDRRVHLFVIRGREVEVREGGAHQVE
Sbjct: 3180 AHVHELHHFWRVNAGLLPWAVARRQGGDGAVLPLGDRRVHLFVIRGREVEVREGGAHQVE 3001
Query: 121 XXXXXXXXXXXXXXEHFMMAVEEERDADLEVG 152
EHFMMAVEEERDADLEVG
Sbjct: 3000 VVRRDRHAVVADTREHFMMAVEEERDADLEVG 2905
>emb|AM494940.1| Leishmania braziliensis chromosome 3
Length = 388728
Score = 197 bits (501), Expect = 9e-49, Method: Composition-based stats.
Identities = 117/152 (76%), Positives = 117/152 (76%)
Frame = +2
Query: 1 RLQRAVHXXXXXXXXXXXXXXXXXXXXXVVHNIEQLPLPPIRVEENAVVLRWNRRPLQEV 60
RLQRAVH VVHNIEQLPLPPIRVEENAVVLRWNRRPLQEV
Sbjct: 217517 RLQRAVHAVVRDERLARRRRRTHDGAAAVVHNIEQLPLPPIRVEENAVVLRWNRRPLQEV 217696
Query: 61 AHVHELHHFWRVNAGLLPWAVARRQGGDGAVLPLGDRRVHLFVIRGREVEVREGGAHQVE 120
AHVHELHHFWRVNAGLLPWAVARRQGGDGAVLPLGDRRVHLFVIRGREVEVREGGAHQVE
Sbjct: 217697 AHVHELHHFWRVNAGLLPWAVARRQGGDGAVLPLGDRRVHLFVIRGREVEVREGGAHQVE 217876
Query: 121 XXXXXXXXXXXXXXEHFMMAVEEERDADLEVG 152
EHFMMAVEEERDADLEVG
Sbjct: 217877 VVRRDRHAVVADTREHFMMAVEEERDADLEVG 217972
>ref|XM_001462762.1| Leishmania infantum hypothetical protein, conserved (LinJ03.0310)
partial mRNA
Length = 6633
Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats.
Identities = 85/151 (56%), Positives = 99/151 (65%)
Frame = -1
Query: 1 RLQRAVHXXXXXXXXXXXXXXXXXXXXXVVHNIEQLPLPPIRVEENAVVLRWNRRPLQEV 60
RLQRAVH VV ++EQLPLPPIRVEE+ VVLRWN RPLQEV
Sbjct: 3360 RLQRAVHAVVRDERLARRRRRTHDGAAAVVDDVEQLPLPPIRVEEDTVVLRWNHRPLQEV 3181
Query: 61 AHVHELHHFWRVNAGLLPWAVARRQGGDGAVLPLGDRRVHLFVIRGREVEVREGGAHQVE 120
AH H+LHH R+ A LLP AVARRQ GDGAVLPLG VHLFV+RG +VEV +GGAH+VE
Sbjct: 3180 AHAHQLHHLRRLKACLLPRAVARRQDGDGAVLPLGYGAVHLFVVRGGKVEVCQGGAHRVE 3001
Query: 121 XXXXXXXXXXXXXXEHFMMAVEEERDADLEV 151
E F+MAV+E+RD D++V
Sbjct: 3000 VVRRDRHAVVADACEDFVMAVQEKRDPDVDV 2908
>emb|AM502221.1| Leishmania infantum chromosome 3
Length = 294508
Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats.
Identities = 85/151 (56%), Positives = 99/151 (65%)
Frame = +2
Query: 1 RLQRAVHXXXXXXXXXXXXXXXXXXXXXVVHNIEQLPLPPIRVEENAVVLRWNRRPLQEV 60
RLQRAVH VV ++EQLPLPPIRVEE+ VVLRWN RPLQEV
Sbjct: 125873 RLQRAVHAVVRDERLARRRRRTHDGAAAVVDDVEQLPLPPIRVEEDTVVLRWNHRPLQEV 126052
Query: 61 AHVHELHHFWRVNAGLLPWAVARRQGGDGAVLPLGDRRVHLFVIRGREVEVREGGAHQVE 120
AH H+LHH R+ A LLP AVARRQ GDGAVLPLG VHLFV+RG +VEV +GGAH+VE
Sbjct: 126053 AHAHQLHHLRRLKACLLPRAVARRQDGDGAVLPLGYGAVHLFVVRGGKVEVCQGGAHRVE 126232
Query: 121 XXXXXXXXXXXXXXEHFMMAVEEERDADLEV 151
E F+MAV+E+RD D++V
Sbjct: 126233 VVRRDRHAVVADACEDFVMAVQEKRDPDVDV 126325
>ref|XM_001687311.1| Leishmania major hypothetical protein, conserved (LmjF03.0690)
partial mRNA
Length = 6636
Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats.
Identities = 79/151 (52%), Positives = 96/151 (63%)
Frame = -1
Query: 1 RLQRAVHXXXXXXXXXXXXXXXXXXXXXVVHNIEQLPLPPIRVEENAVVLRWNRRPLQEV 60
RLQRAVH VV ++EQLPLPP+RVE++ VVLRWN RPLQEV
Sbjct: 3363 RLQRAVHAVVRDERLARRRRRTYDGAAAVVDDVEQLPLPPVRVEDDTVVLRWNHRPLQEV 3184
Query: 61 AHVHELHHFWRVNAGLLPWAVARRQGGDGAVLPLGDRRVHLFVIRGREVEVREGGAHQVE 120
AH H+LHH + A LLP AVARRQ GDGAVLPLG +HLFV+RG +VEV +GGAH+VE
Sbjct: 3183 AHGHQLHHLRGLEARLLPRAVARRQDGDGAVLPLGYGAIHLFVVRGGKVEVCQGGAHRVE 3004
Query: 121 XXXXXXXXXXXXXXEHFMMAVEEERDADLEV 151
E +M V+E+ DAD++V
Sbjct: 3003 VVRRDRHAVVADACEDLVMTVQEKWDADVDV 2911
>gb|AC125735.1| Leishmania major strain Friedlin chromosome 3, complete sequence
Length = 384518
Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats.
Identities = 79/151 (52%), Positives = 96/151 (63%)
Frame = +1
Query: 1 RLQRAVHXXXXXXXXXXXXXXXXXXXXXVVHNIEQLPLPPIRVEENAVVLRWNRRPLQEV 60
RLQRAVH VV ++EQLPLPP+RVE++ VVLRWN RPLQEV
Sbjct: 263452 RLQRAVHAVVRDERLARRRRRTYDGAAAVVDDVEQLPLPPVRVEDDTVVLRWNHRPLQEV 263631
Query: 61 AHVHELHHFWRVNAGLLPWAVARRQGGDGAVLPLGDRRVHLFVIRGREVEVREGGAHQVE 120
AH H+LHH + A LLP AVARRQ GDGAVLPLG +HLFV+RG +VEV +GGAH+VE
Sbjct: 263632 AHGHQLHHLRGLEARLLPRAVARRQDGDGAVLPLGYGAIHLFVVRGGKVEVCQGGAHRVE 263811
Query: 121 XXXXXXXXXXXXXXEHFMMAVEEERDADLEV 151
E +M V+E+ DAD++V
Sbjct: 263812 VVRRDRHAVVADACEDLVMTVQEKWDADVDV 263904
>ref|XM_838760.1| Trypanosoma brucei ATP-dependent DEAD/H RNA helicase, putative
(Tb927.3.2600) partial mRNA
Length = 6513
Score = 65.5 bits (158), Expect = 6e-09, Method: Composition-based stats.
Identities = 43/121 (35%), Positives = 69/121 (57%), Gaps = 2/121 (1%)
Frame = -1
Query: 29 VVHNIEQLPLPPIRVEENAVVLRWNRRPLQEVAHVHELHHFWRVNAGLLPWAVARRQ--G 86
+VH++++L LP + VE NAV+ N RPL++V+HV+ELHHFW V G LP R
Sbjct: 3114 IVHDVKELSLPTVWVEGNAVIGSSNDRPLKQVSHVNELHHFWCV--GQLPHPREHRWP*Q 2941
Query: 87 GDGAVLPLGDRRVHLFVIRGREVEVREGGAHQVEXXXXXXXXXXXXXXEHFMMAVEEERD 146
+LPL D V L V+ +V+V + GA++V+ + M+A++++R+
Sbjct: 2940 TRCLILPLSDGTVQLAVVIFPKVQVPQSGAYRVKVLLRYLQTLVLDHRQDVMVAIKKQRN 2761
Query: 147 A 147
Sbjct: 2760 G 2758
>gb|AC091330.18| Trypanosoma brucei chromosome 3 clone RPCI93-48O8, complete sequence
Length = 138368
Score = 65.5 bits (158), Expect = 6e-09, Method: Composition-based stats.
Identities = 43/121 (35%), Positives = 69/121 (57%), Gaps = 2/121 (1%)
Frame = -1
Query: 29 VVHNIEQLPLPPIRVEENAVVLRWNRRPLQEVAHVHELHHFWRVNAGLLPWAVARRQ--G 86
+VH++++L LP + VE NAV+ N RPL++V+HV+ELHHFW V G LP R
Sbjct: 47237 IVHDVKELSLPTVWVEGNAVIGSSNDRPLKQVSHVNELHHFWCV--GQLPHPREHRWP*Q 47064
Query: 87 GDGAVLPLGDRRVHLFVIRGREVEVREGGAHQVEXXXXXXXXXXXXXXEHFMMAVEEERD 146
+LPL D V L V+ +V+V + GA++V+ + M+A++++R+
Sbjct: 47063 TRCLILPLSDGTVQLAVVIFPKVQVPQSGAYRVKVLLRYLQTLVLDHRQDVMVAIKKQRN 46884
Query: 147 A 147
Sbjct: 46883 G 46881
>ref|XM_817001.1| Trypanosoma cruzi strain CL Brener hypothetical protein partial mRNA
Length = 6525
Score = 57.8 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 38/117 (32%), Positives = 62/117 (52%)
Frame = -1
Query: 30 VHNIEQLPLPPIRVEENAVVLRWNRRPLQEVAHVHELHHFWRVNAGLLPWAVARRQGGDG 89
V+N+ +LPLP I +E N V++ + L +V HV+ L H R L+ W R+QG
Sbjct: 3111 VNNV*KLPLPVIGIEGNTVIMLPHEGTL*QVPHVN*LKHLRRFKKLLVLWKKTRQQGSKC 2932
Query: 90 AVLPLGDRRVHLFVIRGREVEVREGGAHQVEXXXXXXXXXXXXXXEHFMMAVEEERD 146
VLP + V L ++ RE++V EG AH+V +H ++ +++ER+
Sbjct: 2931 HVLPTCNALVKLVIV*IREIKVLEGRAHRVNILRRHPRTLIANHGQHMVVTIQKERN 2761
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.324 0.140 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 398932364
Number of extensions: 6208374
Number of successful extensions: 25843
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 25834
Number of HSP's successfully gapped: 0
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 15 (7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 78 (34.7 bits)
Query= gi|154331742|ref|NC_009296.1|:subseq(217516,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 3
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
ref|XM_001561599.1| Leishmania braziliensis MHOM/BR/75/M2904 hyp... 286 2e-75
emb|AM494940.1| Leishmania braziliensis chromosome 3 286 2e-75
ref|XM_001462762.1| Leishmania infantum hypothetical protein, co... 248 4e-64
emb|AM502221.1| Leishmania infantum chromosome 3 248 4e-64
ref|XM_001687311.1| Leishmania major hypothetical protein, conse... 242 3e-62
gb|AC125735.1| Leishmania major strain Friedlin chromosome 3, co... 242 3e-62
ref|XM_838760.1| Trypanosoma brucei ATP-dependent DEAD/H RNA hel... 130 1e-28
gb|AC091330.18| Trypanosoma brucei chromosome 3 clone RPCI93-48O... 130 1e-28
ref|XM_817001.1| Trypanosoma cruzi strain CL Brener hypothetical... 117 2e-24
ref|XR_027224.1| PREDICTED: Gallus gallus hypothetical LOC422427... 44 0.014
ref|XM_001497557.2| PREDICTED: Equus caballus DEAD (Asp-Glu-Ala-... 44 0.017
gb|BC038115.2| Homo sapiens DEAD (Asp-Glu-Ala-Asp) box polypepti... 44 0.019
ref|XM_001611256.1| Babesia bovis DEAD/DEAH box helicase domain ... 44 0.021
ref|XM_950272.1| Theileria annulata dead/deah-like helicase, put... 44 0.024
ref|XR_024196.1| PREDICTED: Pan troglodytes hypothetical LOC4713... 43 0.041
ref|XM_757698.1| Theileria parva strain Muguga chromosome 3 DEAD... 43 0.041
ref|NM_017631.5| Homo sapiens DEAD (Asp-Glu-Ala-Asp) box polypep... 42 0.051
dbj|AK307404.1| Homo sapiens cDNA, FLJ97352 42 0.051
dbj|AK001649.1| Homo sapiens cDNA FLJ10787 fis, clone NT2RP40004... 42 0.051
ref|XM_001082147.1| PREDICTED: Macaca mulatta similar to C28H8.3... 42 0.059
gb|BC007820.2| Homo sapiens DEAD (Asp-Glu-Ala-Asp) box polypepti... 42 0.067
ref|XM_001664720.1| Caenorhabditis briggsae hypothetical protein... 41 0.11
ref|XM_002153761.1| PREDICTED: Hydra magnipapillata similar to P... 40 0.31
ref|XM_001885763.1| Laccaria bicolor S238N-H82 hypothetical prot... 38 0.99
ref|NM_001012967.1| Homo sapiens DEAD (Asp-Glu-Ala-Asp) box poly... 38 0.99
ref|XM_001152065.1| PREDICTED: Pan troglodytes hypothetical LOC4... 38 0.99
ref|XM_001151810.1| PREDICTED: Pan troglodytes hypothetical LOC4... 38 0.99
ref|XM_001152184.1| PREDICTED: Pan troglodytes hypothetical LOC4... 38 0.99
ref|XM_001152126.1| PREDICTED: Pan troglodytes hypothetical LOC4... 38 0.99
ref|XM_517527.2| PREDICTED: Pan troglodytes hypothetical LOC4615... 38 0.99
dbj|AK092461.1| Homo sapiens cDNA FLJ35142 fis, clone PLACE6009560 38 0.99
dbj|AK055595.1| Homo sapiens cDNA FLJ31033 fis, clone HSYRA10001... 38 0.99
emb|CR933601.1| Homo sapiens mRNA; cDNA DKFZp781D1175 (from clon... 38 0.99
ref|XM_001082450.1| PREDICTED: Macaca mulatta similar to C28H8.3... 37 1.6
ref|XM_390235.1| Gibberella zeae PH-1 hypothetical protein parti... 37 1.6
ref|NM_001041303.1| Encephalitozoon cuniculi GB-M1 putative RNA ... 37 1.8
emb|AL590445.1|CNS07EGC chromosome V of strain GB-M1 of Encephal... 37 1.8
ref|XM_001894550.1| Brugia malayi DEAD/DEAH box helicase family ... 37 2.5
ref|XM_001927633.1| PREDICTED: Sus scrofa similar to Probable AT... 37 3.1
ref|XM_636901.1| Dictyostelium discoideum AX4 hypothetical prote... 36 3.4
ref|XM_001508668.1| PREDICTED: Ornithorhynchus anatinus similar ... 36 4.3
ref|XM_001941182.1| Pyrenophora tritici-repentis Pt-1C-BFP DEAD/... 36 4.5
ref|XM_951948.2| Neurospora crassa OR74A hypothetical protein pa... 35 6.6
ref|XM_001749194.1| Monosiga brevicollis MX1 predicted protein M... 35 7.0
ref|XM_001614523.1| Plasmodium vivax SaI-1 DEAD/DEAH box helicas... 35 7.4
ref|XM_001801147.1| Phaeosphaeria nodorum SN15 hypothetical pro... 35 8.0
ref|XM_002139219.1| Cryptosporidium muris RN66 DEAD/DEAH box hel... 35 8.5
ref|XM_001588813.1| Sclerotinia sclerotiorum 1980 hypothetical p... 35 9.6
ref|NM_001081215.1| Mus musculus DEAD (Asp-Glu-Ala-Asp) box poly... 35 9.8
ref|XM_001070139.1| PREDICTED: Rattus norvegicus similar to C28H... 35 9.8
ref|XM_001072319.1| PREDICTED: Rattus norvegicus similar to hypo... 35 9.8
ref|XM_224795.4| PREDICTED: Rattus norvegicus similar to hypothe... 35 9.8
>ref|XM_001561599.1| Leishmania braziliensis MHOM/BR/75/M2904 hypothetical protein,
conserved (LbrM03_V2.0590) partial mRNA
Length = 6624
Score = 286 bits (732), Expect = 2e-75, Method: Composition-based stats.
Identities = 165/166 (99%), Positives = 165/166 (99%)
Frame = -2
Query: 1 VFSALYMQ*YEMNVLPADVGAHTTALPRLSTISSSSRCHPSGLKRTR*SFVGIAGLSRRW 60
VFSALYMQ*YEMNVLPADVGAHTTALPRLSTISSSSRCHPSGLKRTR*SFVGIAGLSRRW
Sbjct: 3359 VFSALYMQ*YEMNVLPADVGAHTTALPRLSTISSSSRCHPSGLKRTR*SFVGIAGLSRRW 3180
Query: 61 PMYMSCIISGVSTQAFCRGRWLGGRAETGLFCHLVIAASTFS*YEAGKSKCARAERTKSR 120
PMYMSCIISGVSTQAFCRGRWLGGRAETGLFCHLVIAASTFS*YEAGKSKCARAERTKSR
Sbjct: 3179 PMYMSCIISGVSTQAFCRGRWLGGRAETGLFCHLVIAASTFS*YEAGKSKCARAERTKSR 3000
Query: 121 SSVEIATPLSRIQESTLUWQ*RKSGTPTWRLGGSCACRARSRSLFH 166
SSVEIATPLSRIQESTL WQ*RKSGTPTWRLGGSCACRARSRSLFH
Sbjct: 2999 SSVEIATPLSRIQESTL*WQ*RKSGTPTWRLGGSCACRARSRSLFH 2862
>emb|AM494940.1| Leishmania braziliensis chromosome 3
Length = 388728
Score = 286 bits (732), Expect = 2e-75, Method: Composition-based stats.
Identities = 165/166 (99%), Positives = 165/166 (99%)
Frame = +3
Query: 1 VFSALYMQ*YEMNVLPADVGAHTTALPRLSTISSSSRCHPSGLKRTR*SFVGIAGLSRRW 60
VFSALYMQ*YEMNVLPADVGAHTTALPRLSTISSSSRCHPSGLKRTR*SFVGIAGLSRRW
Sbjct: 217518 VFSALYMQ*YEMNVLPADVGAHTTALPRLSTISSSSRCHPSGLKRTR*SFVGIAGLSRRW 217697
Query: 61 PMYMSCIISGVSTQAFCRGRWLGGRAETGLFCHLVIAASTFS*YEAGKSKCARAERTKSR 120
PMYMSCIISGVSTQAFCRGRWLGGRAETGLFCHLVIAASTFS*YEAGKSKCARAERTKSR
Sbjct: 217698 PMYMSCIISGVSTQAFCRGRWLGGRAETGLFCHLVIAASTFS*YEAGKSKCARAERTKSR 217877
Query: 121 SSVEIATPLSRIQESTLUWQ*RKSGTPTWRLGGSCACRARSRSLFH 166
SSVEIATPLSRIQESTL WQ*RKSGTPTWRLGGSCACRARSRSLFH
Sbjct: 217878 SSVEIATPLSRIQESTL*WQ*RKSGTPTWRLGGSCACRARSRSLFH 218015
>ref|XM_001462762.1| Leishmania infantum hypothetical protein, conserved (LinJ03.0310)
partial mRNA
Length = 6633
Score = 248 bits (633), Expect = 4e-64, Method: Composition-based stats.
Identities = 143/166 (86%), Positives = 147/166 (88%)
Frame = -2
Query: 1 VFSALYMQ*YEMNVLPADVGAHTTALPRLSTISSSSRCHPSGLKRTR*SFVGIAGLSRRW 60
VFSALYMQ*YEMNVLPADVGAHTTALPRLST+SSSSRCHPSGLKRTR*SFVGI GLSRRW
Sbjct: 3359 VFSALYMQ*YEMNVLPADVGAHTTALPRLSTMSSSSRCHPSGLKRTR*SFVGITGLSRRW 3180
Query: 61 PMYMSCIISGVSTQAFCRGRWLGGRAETGLFCHLVIAASTFS*YEAGKSKCARAERTKSR 120
PM +SCIISGVS AFCRGRWLGGR ET LFCHL +A STFS*YEAGKSKCARAERT SR
Sbjct: 3179 PMPISCIISGVSKHAFCRGRWLGGRTETALFCHLAMAPSTFS*YEAGKSKCARAERTASR 3000
Query: 121 SSVEIATPLSRIQESTLUWQ*RKSGTPTWRLGGSCACRARSRSLFH 166
SSVEIATPLSR+ TL WQ RKSGTPT G SCACRARSRS FH
Sbjct: 2999 SSVEIATPLSRMHARTL*WQYRKSGTPTLMFGASCACRARSRSFFH 2862
>emb|AM502221.1| Leishmania infantum chromosome 3
Length = 294508
Score = 248 bits (633), Expect = 4e-64, Method: Composition-based stats.
Identities = 143/166 (86%), Positives = 147/166 (88%)
Frame = +3
Query: 1 VFSALYMQ*YEMNVLPADVGAHTTALPRLSTISSSSRCHPSGLKRTR*SFVGIAGLSRRW 60
VFSALYMQ*YEMNVLPADVGAHTTALPRLST+SSSSRCHPSGLKRTR*SFVGI GLSRRW
Sbjct: 125874 VFSALYMQ*YEMNVLPADVGAHTTALPRLSTMSSSSRCHPSGLKRTR*SFVGITGLSRRW 126053
Query: 61 PMYMSCIISGVSTQAFCRGRWLGGRAETGLFCHLVIAASTFS*YEAGKSKCARAERTKSR 120
PM +SCIISGVS AFCRGRWLGGR ET LFCHL +A STFS*YEAGKSKCARAERT SR
Sbjct: 126054 PMPISCIISGVSKHAFCRGRWLGGRTETALFCHLAMAPSTFS*YEAGKSKCARAERTASR 126233
Query: 121 SSVEIATPLSRIQESTLUWQ*RKSGTPTWRLGGSCACRARSRSLFH 166
SSVEIATPLSR+ TL WQ RKSGTPT G SCACRARSRS FH
Sbjct: 126234 SSVEIATPLSRMHARTL*WQYRKSGTPTLMFGASCACRARSRSFFH 126371
>ref|XM_001687311.1| Leishmania major hypothetical protein, conserved (LmjF03.0690)
partial mRNA
Length = 6636
Score = 242 bits (617), Expect = 3e-62, Method: Composition-based stats.
Identities = 141/166 (84%), Positives = 145/166 (87%)
Frame = -2
Query: 1 VFSALYMQ*YEMNVLPADVGAHTTALPRLSTISSSSRCHPSGLKRTR*SFVGIAGLSRRW 60
VFSALYMQ*YEMNVLPADVGAHTTALPRLST+SSSSRCHPSGLK TR*SFVGI GLSRRW
Sbjct: 3362 VFSALYMQ*YEMNVLPADVGAHTTALPRLSTMSSSSRCHPSGLKTTR*SFVGITGLSRRW 3183
Query: 61 PMYMSCIISGVSTQAFCRGRWLGGRAETGLFCHLVIAASTFS*YEAGKSKCARAERTKSR 120
PM +SCIISGVS AFCRGRWLGGR ET LFCHL +A STFS*YEAGKSKCARAERT SR
Sbjct: 3182 PMVISCIISGVSKHAFCRGRWLGGRTETALFCHLAMAPSTFS*YEAGKSKCARAERTASR 3003
Query: 121 SSVEIATPLSRIQESTLUWQ*RKSGTPTWRLGGSCACRARSRSLFH 166
SSVEIATPLSR+ TL Q RKSGTPT G SCACRARSRS FH
Sbjct: 3002 SSVEIATPLSRMHARTL**QYRKSGTPTLMFGASCACRARSRSFFH 2865
>gb|AC125735.1| Leishmania major strain Friedlin chromosome 3, complete sequence
Length = 384518
Score = 242 bits (617), Expect = 3e-62, Method: Composition-based stats.
Identities = 141/166 (84%), Positives = 145/166 (87%)
Frame = +2
Query: 1 VFSALYMQ*YEMNVLPADVGAHTTALPRLSTISSSSRCHPSGLKRTR*SFVGIAGLSRRW 60
VFSALYMQ*YEMNVLPADVGAHTTALPRLST+SSSSRCHPSGLK TR*SFVGI GLSRRW
Sbjct: 263453 VFSALYMQ*YEMNVLPADVGAHTTALPRLSTMSSSSRCHPSGLKTTR*SFVGITGLSRRW 263632
Query: 61 PMYMSCIISGVSTQAFCRGRWLGGRAETGLFCHLVIAASTFS*YEAGKSKCARAERTKSR 120
PM +SCIISGVS AFCRGRWLGGR ET LFCHL +A STFS*YEAGKSKCARAERT SR
Sbjct: 263633 PMVISCIISGVSKHAFCRGRWLGGRTETALFCHLAMAPSTFS*YEAGKSKCARAERTASR 263812
Query: 121 SSVEIATPLSRIQESTLUWQ*RKSGTPTWRLGGSCACRARSRSLFH 166
SSVEIATPLSR+ TL Q RKSGTPT G SCACRARSRS FH
Sbjct: 263813 SSVEIATPLSRMHARTL**QYRKSGTPTLMFGASCACRARSRSFFH 263950
>ref|XM_838760.1| Trypanosoma brucei ATP-dependent DEAD/H RNA helicase, putative
(Tb927.3.2600) partial mRNA
Length = 6513
Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats.
Identities = 95/160 (59%), Positives = 106/160 (66%)
Frame = -2
Query: 5 LYMQ*YEMNVLPADVGAHTTALPRLSTISSSSRCHPSGLKRTR*SFVGIAGLSRRWPMYM 64
LYMQ*YE NV PA+VGAHTTALPRLST+S SSRC SGLK TR*S + + G S R PM M
Sbjct: 3185 LYMQ*YETNVFPAEVGAHTTALPRLSTMSRSSRCQLSGLKATR*SGLRMTGRSSRCPM*M 3006
Query: 65 SCIISGVSTQAFCRGRWLGGRAETGLFCHLVIAASTFS*YEAGKSKCARAERTKSRSSVE 124
SCIISGVS RG +G LFCH V+A S+ * + KS+C RAERT SRSS +
Sbjct: 3005 SCIISGVSVSCRIRGSIVGPNKLGALFCH*VMARSSLL**SSPKSRCLRAERTVSRSSCD 2826
Query: 125 IATPLSRIQESTLUWQ*RKSGTPTWRLGGSCACRARSRSL 164
I P + T WQ*R SG T R G S A RARSRSL
Sbjct: 2825 ICRPSFWTTDKT*WWQ*RNSGMATDRSGVSLAKRARSRSL 2706
>gb|AC091330.18| Trypanosoma brucei chromosome 3 clone RPCI93-48O8, complete sequence
Length = 138368
Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats.
Identities = 95/160 (59%), Positives = 106/160 (66%)
Frame = -2
Query: 5 LYMQ*YEMNVLPADVGAHTTALPRLSTISSSSRCHPSGLKRTR*SFVGIAGLSRRWPMYM 64
LYMQ*YE NV PA+VGAHTTALPRLST+S SSRC SGLK TR*S + + G S R PM M
Sbjct: 47308 LYMQ*YETNVFPAEVGAHTTALPRLSTMSRSSRCQLSGLKATR*SGLRMTGRSSRCPM*M 47129
Query: 65 SCIISGVSTQAFCRGRWLGGRAETGLFCHLVIAASTFS*YEAGKSKCARAERTKSRSSVE 124
SCIISGVS RG +G LFCH V+A S+ * + KS+C RAERT SRSS +
Sbjct: 47128 SCIISGVSVSCRIRGSIVGPNKLGALFCH*VMARSSLL**SSPKSRCLRAERTVSRSSCD 46949
Query: 125 IATPLSRIQESTLUWQ*RKSGTPTWRLGGSCACRARSRSL 164
I P + T WQ*R SG T R G S A RARSRSL
Sbjct: 46948 ICRPSFWTTDKT*WWQ*RNSGMATDRSGVSLAKRARSRSL 46829
>ref|XM_817001.1| Trypanosoma cruzi strain CL Brener hypothetical protein partial mRNA
Length = 6525
Score = 117 bits (292), Expect = 2e-24, Method: Composition-based stats.
Identities = 86/160 (53%), Positives = 102/160 (63%)
Frame = -2
Query: 4 ALYMQ*YEMNVLPADVGAHTTALPRLSTISSSSRCHPSGLKRTR*SFVGIAGLSRRWPMY 63
ALY+Q*YE+ VLPA+VGA TTALPR ST+S SSRC SGLK TR*S G S + PM
Sbjct: 3188 ALYIQ*YEIKVLPAEVGAQTTALPRPSTMSRSSRCQLSGLKATR*SCSRTKGRSNKCPM* 3009
Query: 64 MSCIISGVSTQAFCRGRWLGGRAETGLFCHLVIAASTFS*YEAGKSKCARAERTKSRSSV 123
++ ISGVS GR LG R + +FC + S+ *YE+G+SKC RAERT S SS
Sbjct: 3008 IN*SISGVSKSCLSCGRRLGSRVPSVMFCQRAMHWSSLL*YESGRSKCLRAERTVSISSE 2829
Query: 124 EIATPLSRIQESTLUWQ*RKSGTPTWRLGGSCACRARSRS 163
+I P SRI +T Q +K G P G S A RARSRS
Sbjct: 2828 DIRGPSSRITANTWW*QYKKRGIPRAIFGDSWAKRARSRS 2709
>ref|XR_027224.1| PREDICTED: Gallus gallus hypothetical LOC422427 (LOC422427), mRNA
Length = 5454
Score = 44.3 bits (103), Expect = 0.014, Method: Composition-based stats.
Identities = 26/44 (59%), Positives = 28/44 (63%)
Frame = -2
Query: 1 VFSALYMQ*YEMNVLPADVGAHTTALPRLSTISSSSRCHPSGLK 44
+F MQ*YE V P DVGA TA LST S SSRCH SG+K
Sbjct: 2726 IFRTFSMQ*YEAYVFPDDVGATITADSLLSTASRSSRCHVSGMK 2595
>ref|XM_001497557.2| PREDICTED: Equus caballus DEAD (Asp-Glu-Ala-Asp) box polypeptide
60-like (DDX60L), mRNA
Length = 4971
Score = 43.9 bits (102), Expect = 0.017, Method: Composition-based stats.
Identities = 35/76 (46%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Frame = -2
Query: 2 FSALYMQ*YEMNVLPADVGAHTTALPRLSTISSSSRCHPSGLKR-TR*SFVGIAGLSRRW 60
FS MQ* E VLP DVGA TA LST S +SRCH SG+K T S ++ + W
Sbjct: 2402 FSTFSMQ**EA*VLPEDVGATITADSLLSTTSRTSRCHVSGMKSWTLGSGSFLSSRIK*W 2223
Query: 61 PMYMSCIISGVSTQAF 76
PMY S ++G + A+
Sbjct: 2222 PMYCS*NLAGPMSIAY 2175
>gb|BC038115.2| Homo sapiens DEAD (Asp-Glu-Ala-Asp) box polypeptide 60, mRNA (cDNA
clone MGC:43125 IMAGE:5261001), complete cds
Length = 6031
Score = 43.9 bits (102), Expect = 0.019, Method: Composition-based stats.
Identities = 33/65 (50%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Frame = -3
Query: 2 FSALYMQ*YEMNVLPADVGAHTTALPRLSTISSSSRCHPSGLKR-TR*SFVGIAGLSRRW 60
FS +Q* E VLP DVGA TA LST S SSRCH SG+K T S ++ + W
Sbjct: 2648 FSTFSIQ**EAYVLPEDVGATITADSFLSTTSRSSRCHVSGIKSWTLGSGSFLSSRIK*W 2469
Query: 61 PMYMS 65
PMY S
Sbjct: 2468 PMYCS 2454
>ref|XM_001611256.1| Babesia bovis DEAD/DEAH box helicase domain containing protein
(BBOV_III001710) mRNA, complete cds
Length = 5991
Score = 43.5 bits (101), Expect = 0.021, Method: Composition-based stats.
Identities = 28/52 (53%), Positives = 31/52 (59%)
Frame = -2
Query: 11 EMNVLPADVGAHTTALPRLSTISSSSRCHPSGLKRTR*SFVGIAGLSRRWPM 62
+M VLP DVGA T RLST+SSS C SGL +TR S V S R PM
Sbjct: 2945 QMYVLPVDVGATTNDDSRLSTVSSSIFCQASGLNKTRGSSVDPKVRSMRSPM 2790
>ref|XM_950272.1| Theileria annulata dead/deah-like helicase, putative (TA17645) mRNA,
complete cds
Length = 6486
Score = 43.5 bits (101), Expect = 0.024, Method: Composition-based stats.
Identities = 27/52 (51%), Positives = 30/52 (57%)
Frame = -2
Query: 11 EMNVLPADVGAHTTALPRLSTISSSSRCHPSGLKRTR*SFVGIAGLSRRWPM 62
+M VLP DVGA T A STIS++ CH SGL T SFV LS PM
Sbjct: 3158 QM*VLPVDVGATTNADSFASTISNNIFCHASGLNNTLGSFVLPNVLSNTSPM 3003
>ref|XR_024196.1| PREDICTED: Pan troglodytes hypothetical LOC471343 (LOC471343), mRNA
Length = 6082
Score = 42.7 bits (99), Expect = 0.041, Method: Composition-based stats.
Identities = 33/65 (50%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Frame = -2
Query: 2 FSALYMQ*YEMNVLPADVGAHTTALPRLSTISSSSRCHPSGLKR-TR*SFVGIAGLSRRW 60
FS +Q* E VLP DVGA TA LST S SSRCH SG+K T S ++ + W
Sbjct: 2703 FSTFSIQ**EA*VLPEDVGATITADSFLSTTSRSSRCHVSGIKSWTLGSGSFLSSRIK*W 2524
Query: 61 PMYMS 65
PMY S
Sbjct: 2523 PMYCS 2509
>ref|XM_757698.1| Theileria parva strain Muguga chromosome 3 DEAD box RNA helicase
(TP03_0667) partial mRNA
Length = 7080
Score = 42.7 bits (99), Expect = 0.041, Method: Composition-based stats.
Identities = 28/52 (53%), Positives = 31/52 (59%)
Frame = -2
Query: 11 EMNVLPADVGAHTTALPRLSTISSSSRCHPSGLKRTR*SFVGIAGLSRRWPM 62
+M VLP DVGA T A ST+SS+ CH SGLK T SFV LS PM
Sbjct: 3425 QM*VLPVDVGATTNADSLASTMSSNIFCHASGLKSTLGSFVLPKVLSNTSPM 3270
>ref|NM_017631.5| Homo sapiens DEAD (Asp-Glu-Ala-Asp) box polypeptide 60 (DDX60), mRNA
Length = 6099
Score = 42.4 bits (98), Expect = 0.051, Method: Composition-based stats.
Identities = 33/65 (50%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Frame = -1
Query: 2 FSALYMQ*YEMNVLPADVGAHTTALPRLSTISSSSRCHPSGLKR-TR*SFVGIAGLSRRW 60
FS +Q* E VLP DVGA TA LST S SSRCH SG+K T S ++ + W
Sbjct: 2703 FSTFSIQ**EA*VLPEDVGATITADSFLSTTSRSSRCHVSGIKSWTLGSGSFLSSRIK*W 2524
Query: 61 PMYMS 65
PMY S
Sbjct: 2523 PMYCS 2509
>dbj|AK307404.1| Homo sapiens cDNA, FLJ97352
Length = 3742
Score = 42.4 bits (98), Expect = 0.051, Method: Composition-based stats.
Identities = 33/65 (50%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Frame = -2
Query: 2 FSALYMQ*YEMNVLPADVGAHTTALPRLSTISSSSRCHPSGLKR-TR*SFVGIAGLSRRW 60
FS +Q* E VLP DVGA TA LST S SSRCH SG+K T S ++ + W
Sbjct: 2703 FSTFSIQ**EA*VLPEDVGATITADSFLSTTSRSSRCHVSGIKSWTLGSGSFLSSRIK*W 2524
Query: 61 PMYMS 65
PMY S
Sbjct: 2523 PMYCS 2509
>dbj|AK001649.1| Homo sapiens cDNA FLJ10787 fis, clone NT2RP4000481, weakly similar to
ATP-DEPENDENT RNA HELICASE DOB1
Length = 3689
Score = 42.4 bits (98), Expect = 0.051, Method: Composition-based stats.
Identities = 33/65 (50%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Frame = -1
Query: 2 FSALYMQ*YEMNVLPADVGAHTTALPRLSTISSSSRCHPSGLKR-TR*SFVGIAGLSRRW 60
FS +Q* E VLP DVGA TA LST S SSRCH SG+K T S ++ + W
Sbjct: 2579 FSTFSIQ**EA*VLPEDVGATITADSFLSTTSRSSRCHVSGIKSWTLGSGSFLSSRIK*W 2400
Query: 61 PMYMS 65
PMY S
Sbjct: 2399 PMYCS 2385
>ref|XM_001082147.1| PREDICTED: Macaca mulatta similar to C28H8.3 (LOC693567), mRNA
Length = 6063
Score = 42.0 bits (97), Expect = 0.059, Method: Composition-based stats.
Identities = 34/65 (52%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Frame = -1
Query: 2 FSALYMQ*YEMNVLPADVGAHTTALPRLSTISSSSRCHPSGLKR-TR*SFVGIAGLSRRW 60
FS MQ* E VLP DVGA TA LST S SSRCH SG+K T S ++ + W
Sbjct: 2715 FSTFSMQ**EA*VLPEDVGATITADSFLSTTSRSSRCHVSGIKSWTLGSGSFLSSRIK*W 2536
Query: 61 PMYMS 65
PMY S
Sbjct: 2535 PMYCS 2521
>gb|BC007820.2| Homo sapiens DEAD (Asp-Glu-Ala-Asp) box polypeptide 60, mRNA (cDNA
clone IMAGE:4303165), partial cds
Length = 897
Score = 42.0 bits (97), Expect = 0.067, Method: Composition-based stats.
Identities = 33/65 (50%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Frame = -2
Query: 2 FSALYMQ*YEMNVLPADVGAHTTALPRLSTISSSSRCHPSGLKR-TR*SFVGIAGLSRRW 60
FS +Q* E VLP DVGA TA LST S SSRCH SG+K T S ++ + W
Sbjct: 230 FSTFSIQ**EA*VLPEDVGATITADSFLSTTSRSSRCHVSGIKSWTLGSGSFLSSRIK*W 51
Query: 61 PMYMS 65
PMY S
Sbjct: 50 PMYCS 36
>ref|XM_001664720.1| Caenorhabditis briggsae hypothetical protein CBG09045 partial mRNA
Length = 5145
Score = 41.2 bits (95), Expect = 0.11, Method: Composition-based stats.
Identities = 34/61 (55%), Positives = 37/61 (60%), Gaps = 2/61 (3%)
Frame = -2
Query: 7 MQ*YEMNVLPADVGAHTTA-LPRLSTISSSSRCHPSGLKR-TR*SFVGIAGLSRRWPMYM 64
+Q*YE NVLPA+VGA A LPR ST SS CHPSG TR SF G +S P Y
Sbjct: 2459 IQ*YETNVLPAEVGAMIRAELPR-STESSIFLCHPSGANPLTRSSFFGSD*ISMSSPPYW 2283
Query: 65 S 65
S
Sbjct: 2282 S 2280
>ref|XM_002153761.1| PREDICTED: Hydra magnipapillata similar to Probable ATP-dependent RNA
helicase DDX60 (LOC100205118), partial mRNA
Length = 4167
Score = 39.7 bits (91), Expect = 0.31, Method: Composition-based stats.
Identities = 24/44 (54%), Positives = 26/44 (59%)
Frame = -2
Query: 1 VFSALYMQ*YEMNVLPADVGAHTTALPRLSTISSSSRCHPSGLK 44
V + MQ*YE VLP VGA TA LST S S CH SG+K
Sbjct: 2156 VLNIFSMQ*YEAYVLPELVGAIITAD*LLSTTSKSFLCHVSGIK 2025
>ref|XM_001885763.1| Laccaria bicolor S238N-H82 hypothetical protein partial mRNA
Length = 5553
Score = 38.1 bits (87), Expect = 0.99, Method: Composition-based stats.
Identities = 22/41 (53%), Positives = 26/41 (63%)
Frame = -2
Query: 7 MQ*YEMNVLPADVGAHTTALPRLSTISSSSRCHPSGLKRTR 47
+ *Y+MNV PA VGA T LS S++ RCHPSG TR
Sbjct: 2630 IA*YDMNVFPALVGATTKRE*PLSMESNT*RCHPSGSNETR 2508
>ref|NM_001012967.1| Homo sapiens DEAD (Asp-Glu-Ala-Asp) box polypeptide 60-like (DDX60L),
mRNA
Length = 6754
Score = 38.1 bits (87), Expect = 0.99, Method: Composition-based stats.
Identities = 32/65 (49%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Frame = -1
Query: 2 FSALYMQ*YEMNVLPADVGAHTTALPRLSTISSSSRCHPSGLKR-TR*SFVGIAGLSRRW 60
S MQ* E VLP DVGA TA LST S SS CH G+K T S ++ L + W
Sbjct: 2572 LSTFSMQ**EA*VLPEDVGATITADSFLSTTSRSSCCHALGIKSWTLGSRSFLSSLIK*W 2393
Query: 61 PMYMS 65
PMY S
Sbjct: 2392 PMYCS 2378
>ref|XM_001152065.1| PREDICTED: Pan troglodytes hypothetical LOC461595, transcript variant
2 (LOC461595), mRNA
Length = 5938
Score = 38.1 bits (87), Expect = 0.99, Method: Composition-based stats.
Identities = 32/65 (49%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Frame = -3
Query: 2 FSALYMQ*YEMNVLPADVGAHTTALPRLSTISSSSRCHPSGLKR-TR*SFVGIAGLSRRW 60
S MQ* E VLP DVGA TA LST S SS CH G+K T S ++ L + W
Sbjct: 1838 LSTFSMQ**EA*VLPEDVGATITADSFLSTTSRSSCCHALGIKSWTLGSRSFLSSLIK*W 1659
Query: 61 PMYMS 65
PMY S
Sbjct: 1658 PMYCS 1644
>ref|XM_001151810.1| PREDICTED: Pan troglodytes hypothetical LOC461595, transcript variant
1 (LOC461595), mRNA
Length = 6933
Score = 38.1 bits (87), Expect = 0.99, Method: Composition-based stats.
Identities = 32/65 (49%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Frame = -3
Query: 2 FSALYMQ*YEMNVLPADVGAHTTALPRLSTISSSSRCHPSGLKR-TR*SFVGIAGLSRRW 60
S MQ* E VLP DVGA TA LST S SS CH G+K T S ++ L + W
Sbjct: 2737 LSTFSMQ**EA*VLPEDVGATITADSFLSTTSRSSCCHALGIKSWTLGSRSFLSSLIK*W 2558
Query: 61 PMYMS 65
PMY S
Sbjct: 2557 PMYCS 2543
>ref|XM_001152184.1| PREDICTED: Pan troglodytes hypothetical LOC461595, transcript variant
4 (LOC461595), mRNA
Length = 6885
Score = 38.1 bits (87), Expect = 0.99, Method: Composition-based stats.
Identities = 32/65 (49%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Frame = -3
Query: 2 FSALYMQ*YEMNVLPADVGAHTTALPRLSTISSSSRCHPSGLKR-TR*SFVGIAGLSRRW 60
S MQ* E VLP DVGA TA LST S SS CH G+K T S ++ L + W
Sbjct: 2686 LSTFSMQ**EA*VLPEDVGATITADSFLSTTSRSSCCHALGIKSWTLGSRSFLSSLIK*W 2507
Query: 61 PMYMS 65
PMY S
Sbjct: 2506 PMYCS 2492
>ref|XM_001152126.1| PREDICTED: Pan troglodytes hypothetical LOC461595, transcript variant
3 (LOC461595), mRNA
Length = 6763
Score = 38.1 bits (87), Expect = 0.99, Method: Composition-based stats.
Identities = 32/65 (49%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Frame = -3
Query: 2 FSALYMQ*YEMNVLPADVGAHTTALPRLSTISSSSRCHPSGLKR-TR*SFVGIAGLSRRW 60
S MQ* E VLP DVGA TA LST S SS CH G+K T S ++ L + W
Sbjct: 2564 LSTFSMQ**EA*VLPEDVGATITADSFLSTTSRSSCCHALGIKSWTLGSRSFLSSLIK*W 2385
Query: 61 PMYMS 65
PMY S
Sbjct: 2384 PMYCS 2370
>ref|XM_517527.2| PREDICTED: Pan troglodytes hypothetical LOC461595, transcript variant
5 (LOC461595), mRNA
Length = 6747
Score = 38.1 bits (87), Expect = 0.99, Method: Composition-based stats.
Identities = 32/65 (49%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Frame = -3
Query: 2 FSALYMQ*YEMNVLPADVGAHTTALPRLSTISSSSRCHPSGLKR-TR*SFVGIAGLSRRW 60
S MQ* E VLP DVGA TA LST S SS CH G+K T S ++ L + W
Sbjct: 2548 LSTFSMQ**EA*VLPEDVGATITADSFLSTTSRSSCCHALGIKSWTLGSRSFLSSLIK*W 2369
Query: 61 PMYMS 65
PMY S
Sbjct: 2368 PMYCS 2354
>dbj|AK092461.1| Homo sapiens cDNA FLJ35142 fis, clone PLACE6009560
Length = 2605
Score = 38.1 bits (87), Expect = 0.99, Method: Composition-based stats.
Identities = 32/65 (49%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Frame = -3
Query: 2 FSALYMQ*YEMNVLPADVGAHTTALPRLSTISSSSRCHPSGLKR-TR*SFVGIAGLSRRW 60
S MQ* E VLP DVGA TA LST S SS CH G+K T S ++ L + W
Sbjct: 1535 LSTFSMQ**EA*VLPEDVGATITADSFLSTTSRSSCCHALGIKSWTLGSRSFLSSLIK*W 1356
Query: 61 PMYMS 65
PMY S
Sbjct: 1355 PMYCS 1341
>dbj|AK055595.1| Homo sapiens cDNA FLJ31033 fis, clone HSYRA1000168, weakly similar to
HYPOTHETICAL HELICASE C28H8.3 IN CHROMOSOME III
Length = 2245
Score = 38.1 bits (87), Expect = 0.99, Method: Composition-based stats.
Identities = 32/65 (49%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Frame = -2
Query: 2 FSALYMQ*YEMNVLPADVGAHTTALPRLSTISSSSRCHPSGLKR-TR*SFVGIAGLSRRW 60
S MQ* E VLP DVGA TA LST S SS CH G+K T S ++ L + W
Sbjct: 1098 LSTFSMQ**EA*VLPEDVGATITADSFLSTTSRSSCCHALGIKSWTLGSRSFLSSLIK*W 919
Query: 61 PMYMS 65
PMY S
Sbjct: 918 PMYCS 904
>emb|CR933601.1| Homo sapiens mRNA; cDNA DKFZp781D1175 (from clone DKFZp781D1175)
Length = 4586
Score = 38.1 bits (87), Expect = 0.99, Method: Composition-based stats.
Identities = 32/65 (49%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Frame = -1
Query: 2 FSALYMQ*YEMNVLPADVGAHTTALPRLSTISSSSRCHPSGLKR-TR*SFVGIAGLSRRW 60
S MQ* E VLP DVGA TA LST S SS CH G+K T S ++ L + W
Sbjct: 2573 LSTFSMQ**EA*VLPEDVGATITADSFLSTTSRSSCCHALGIKSWTLGSRSFLSSLIK*W 2394
Query: 61 PMYMS 65
PMY S
Sbjct: 2393 PMYCS 2379
>ref|XM_001082450.1| PREDICTED: Macaca mulatta similar to C28H8.3 (LOC693749), mRNA
Length = 5612
Score = 37.4 bits (85), Expect = 1.6, Method: Composition-based stats.
Identities = 34/69 (49%), Positives = 38/69 (55%), Gaps = 5/69 (7%)
Frame = -1
Query: 2 FSALYMQ*YEMNVLPADVGAHTTALPRLSTISSSSRCHPSGLKRTR*SFVGIAG--LSRR 59
S MQ* E V PAD GA TA LST S SSRCH G+K S++ +G LS R
Sbjct: 2375 LSTFSMQ**EA*VFPADTGATITADSFLSTTSRSSRCHVLGIK----SWILGSGFFLSSR 2208
Query: 60 ---WPMYMS 65
WPMY S
Sbjct: 2207 IK*WPMYCS 2181
>ref|XM_390235.1| Gibberella zeae PH-1 hypothetical protein partial mRNA
Length = 4827
Score = 37.4 bits (85), Expect = 1.6, Method: Composition-based stats.
Identities = 22/40 (55%), Positives = 25/40 (62%)
Frame = -2
Query: 3 SALYMQ*YEMNVLPADVGAHTTALPRLSTISSSSRCHPSG 42
S ++ * EMNVLPADVGA T L S S +SRC SG
Sbjct: 2165 STFFIA*KEMNVLPADVGATTKTLSFASIQSRTSRCQASG 2046
>ref|NM_001041303.1| Encephalitozoon cuniculi GB-M1 putative RNA HELICASE OF THE SKI2
SUBFAMILY (ECU05_0940) partial mRNA
Length = 4014
Score = 37.4 bits (85), Expect = 1.8, Method: Composition-based stats.
Identities = 23/40 (57%), Positives = 25/40 (62%)
Frame = -2
Query: 11 EMNVLPADVGAHTTALPRLSTISSSSRCHPSGLKRTR*SF 50
++NV PA VGA TAL ST S CH SGL RTR SF
Sbjct: 1640 QINVFPALVGADITALLFWSTRSRRRTCHSSGLNRTRGSF 1521
>emb|AL590445.1|CNS07EGC chromosome V of strain GB-M1 of Encephalitozoon cuniculi (Microspora)
Length = 211018
Score = 37.4 bits (85), Expect = 1.8, Method: Composition-based stats.
Identities = 23/40 (57%), Positives = 25/40 (62%)
Frame = +1
Query: 11 EMNVLPADVGAHTTALPRLSTISSSSRCHPSGLKRTR*SF 50
++NV PA VGA TAL ST S CH SGL RTR SF
Sbjct: 124429 QINVFPALVGADITALLFWSTRSRRRTCHSSGLNRTRGSF 124548
>ref|XM_001894550.1| Brugia malayi DEAD/DEAH box helicase family protein partial mRNA
Length = 5133
Score = 36.6 bits (83), Expect = 2.5, Method: Composition-based stats.
Identities = 26/47 (55%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Frame = -2
Query: 7 MQ*YEMNVLPADVGAHTTALPRLSTISSSSRCHPSGLKR-TR*SFVG 52
+Q*Y+ VLPA+VGA TA LST S+ CH SG K TR SF G
Sbjct: 2393 IQ*YDTKVLPAEVGAIITAE*FLSTASNIRLCHASGWKPVTRSSFCG 2253
>ref|XM_001927633.1| PREDICTED: Sus scrofa similar to Probable ATP-dependent RNA helicase
DDX60 (DEAD box protein 60) (LOC100158037), mRNA
Length = 5271
Score = 36.6 bits (83), Expect = 3.1, Method: Composition-based stats.
Identities = 26/42 (61%), Positives = 27/42 (64%)
Frame = -2
Query: 3 SALYMQ*YEMNVLPADVGAHTTALPRLSTISSSSRCHPSGLK 44
S L MQ* E V P DVGA TA LST S SSRCH SG+K
Sbjct: 2543 STLSMQ**EA*VFPEDVGATMTADSFLSTTSRSSRCHVSGIK 2418
>ref|XM_636901.1| Dictyostelium discoideum AX4 hypothetical protein (DDBDRAFT_0206223)
partial mRNA
Length = 5451
Score = 36.2 bits (82), Expect = 3.4, Method: Composition-based stats.
Identities = 22/43 (51%), Positives = 25/43 (58%)
Frame = -2
Query: 2 FSALYMQ*YEMNVLPADVGAHTTALPRLSTISSSSRCHPSGLK 44
F Q* E+ VLP DV A A LSTIS++S C SGLK
Sbjct: 2573 FKICSKQ*KEIKVLPLDVLAQIKADSLLSTISNNSTCQASGLK 2445
>ref|XM_001508668.1| PREDICTED: Ornithorhynchus anatinus similar to FLJ00040 protein
(LOC100077504), mRNA
Length = 4947
Score = 35.8 bits (81), Expect = 4.3, Method: Composition-based stats.
Identities = 26/43 (60%), Positives = 28/43 (65%)
Frame = -2
Query: 2 FSALYMQ*YEMNVLPADVGAHTTALPRLSTISSSSRCHPSGLK 44
FS MQ*YE VLP +VGA A LST S SSRCH SG+K
Sbjct: 2252 FSTFSMQ*YEAYVLPDEVGATIKADSLLSTTSRSSRCHVSGIK 2124
>ref|XM_001941182.1| Pyrenophora tritici-repentis Pt-1C-BFP DEAD/DEAH box helicase, mRNA
Length = 5325
Score = 35.8 bits (81), Expect = 4.5, Method: Composition-based stats.
Identities = 21/42 (50%), Positives = 26/42 (61%)
Frame = -2
Query: 6 YMQ*YEMNVLPADVGAHTTALPRLSTISSSSRCHPSGLKRTR 47
+M * ++ V PADVGA T L R S S++ RCH SG TR
Sbjct: 2333 FMA*KDIKVFPADVGAMTRRLRRASISSNTRRCHASGSNATR 2208
>ref|XM_951948.2| Neurospora crassa OR74A hypothetical protein partial mRNA
Length = 4608
Score = 35.4 bits (80), Expect = 6.6, Method: Composition-based stats.
Identities = 22/37 (59%), Positives = 24/37 (64%)
Frame = -2
Query: 11 EMNVLPADVGAHTTALPRLSTISSSSRCHPSGLKRTR 47
EMNVLPADVGA T+ L S SS+ C SG K TR
Sbjct: 2084 EMNVLPADVGAITSRLLFSSIASSTFLCQASGSKGTR 1974
>ref|XM_001749194.1| Monosiga brevicollis MX1 predicted protein MONBRDRAFT_34002 mRNA,
complete cds
Length = 7758
Score = 35.4 bits (80), Expect = 7.0, Method: Composition-based stats.
Identities = 22/38 (57%), Positives = 22/38 (57%)
Frame = -2
Query: 7 MQ*YEMNVLPADVGAHTTALPRLSTISSSSRCHPSGLK 44
M * EM VLP DVGA AL RLS S RC SG K
Sbjct: 4286 MA*KEMKVLPEDVGAEMRALWRLSMAVRSVRCQSSGGK 4173
>ref|XM_001614523.1| Plasmodium vivax SaI-1 DEAD/DEAH box helicase partial mRNA
Length = 7341
Score = 35.0 bits (79), Expect = 7.4, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 30/57 (52%)
Frame = -2
Query: 3 SALYMQ*YEMNVLPADVGAHTTALPRLSTISSSSRCHPSGLKRTR*SFVGIAGLSRR 59
S L + * ++NVLP VG T L RLST C S +K TR SF+ LS R
Sbjct: 3647 STLSIT**QINVLPLLVGQETKMLFRLSTRFKMLYCQVSNVKSTRLSFIFPVVLSNR 3477
>ref|XM_001801147.1| Phaeosphaeria nodorum SN15 hypothetical protein partial mRNA
Length = 5298
Score = 35.0 bits (79), Expect = 8.0, Method: Composition-based stats.
Identities = 22/42 (52%), Positives = 27/42 (64%)
Frame = -2
Query: 6 YMQ*YEMNVLPADVGAHTTALPRLSTISSSSRCHPSGLKRTR 47
++ * EM VLPA+VGA T+ L R S S + CH SG K TR
Sbjct: 2264 FIA*NEMKVLPAEVGAMTSRLRRASISSRTFLCHASGSKGTR 2139
>ref|XM_002139219.1| Cryptosporidium muris RN66 DEAD/DEAH box helicase, putative, mRNA
Length = 6105
Score = 35.0 bits (79), Expect = 8.5, Method: Composition-based stats.
Identities = 23/55 (41%), Positives = 30/55 (54%)
Frame = -2
Query: 11 EMNVLPADVGAHTTALPRLSTISSSSRCHPSGLKRTR*SFVGIAGLSRRWPMYMS 65
++NV P VGAHT+A LS ISS C SG T S + S+ P+Y+S
Sbjct: 2975 QINVFPLAVGAHTSAESPLSIISSMYFCQ*SGKNNTLESTMLPVERSKSAPIYLS 2811
>ref|XM_001588813.1| Sclerotinia sclerotiorum 1980 hypothetical protein (SS1G_10411)
partial mRNA
Length = 4983
Score = 34.7 bits (78), Expect = 9.6, Method: Composition-based stats.
Identities = 19/33 (57%), Positives = 22/33 (66%)
Frame = -2
Query: 12 MNVLPADVGAHTTALPRLSTISSSSRCHPSGLK 44
MNVLPA+VGA T L S S+S C PSG+K
Sbjct: 1949 MNVLPAEVGATTNILLSASN*LSTSLCQPSGMK 1851
>ref|NM_001081215.1| Mus musculus DEAD (Asp-Glu-Ala-Asp) box polypeptide 60 (Ddx60), mRNA
Length = 5989
Score = 34.7 bits (78), Expect = 9.8, Method: Composition-based stats.
Identities = 27/43 (62%), Positives = 28/43 (65%)
Frame = -2
Query: 2 FSALYMQ*YEMNVLPADVGAHTTALPRLSTISSSSRCHPSGLK 44
FS MQ* E VLP DVGA TA LST S SSRCH SG+K
Sbjct: 2700 FSTFSMQ**EA*VLPDDVGATITADS*LSTTSRSSRCHVSGIK 2572
>ref|XM_001070139.1| PREDICTED: Rattus norvegicus similar to C28H8.3 (LOC684383), mRNA
Length = 906
Score = 34.7 bits (78), Expect = 9.8, Method: Composition-based stats.
Identities = 27/43 (62%), Positives = 28/43 (65%)
Frame = -2
Query: 2 FSALYMQ*YEMNVLPADVGAHTTALPRLSTISSSSRCHPSGLK 44
FS MQ* E VLP DVGA TA LST S SSRCH SG+K
Sbjct: 242 FSTFSMQ**EA*VLPDDVGATITADS*LSTTSRSSRCHVSGIK 114
>ref|XM_001072319.1| PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ20035
(predicted) (RGD1560014_predicted), mRNA
Length = 5738
Score = 34.7 bits (78), Expect = 9.8, Method: Composition-based stats.
Identities = 27/43 (62%), Positives = 28/43 (65%)
Frame = -1
Query: 2 FSALYMQ*YEMNVLPADVGAHTTALPRLSTISSSSRCHPSGLK 44
FS MQ* E VLP DVGA TA LST S SSRCH SG+K
Sbjct: 2387 FSTFSMQ**EA*VLPDDVGATITADS*LSTTSRSSRCHVSGIK 2259
>ref|XM_224795.4| PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ20035
(predicted) (RGD1560014_predicted), mRNA
Length = 4454
Score = 34.7 bits (78), Expect = 9.8, Method: Composition-based stats.
Identities = 27/43 (62%), Positives = 28/43 (65%)
Frame = -1
Query: 2 FSALYMQ*YEMNVLPADVGAHTTALPRLSTISSSSRCHPSGLK 44
FS MQ* E VLP DVGA TA LST S SSRCH SG+K
Sbjct: 1103 FSTFSMQ**EA*VLPDDVGATITADS*LSTTSRSSRCHVSGIK 975
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.336 0.139 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 631869715
Number of extensions: 10167149
Number of successful extensions: 93715
Number of sequences better than 10: 1
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 93661
Number of HSP's successfully gapped: 1
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 15 (7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (19.6 bits)
S2: 78 (34.7 bits)
Query= gi|154331742|ref|NC_009296.1|:subseq(217516,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 3
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
ref|XM_001561599.1| Leishmania braziliensis MHOM/BR/75/M2904 hyp... 96 3e-18
emb|AM494940.1| Leishmania braziliensis chromosome 3 96 3e-18
ref|XM_001462762.1| Leishmania infantum hypothetical protein, co... 39 0.45
emb|AM502221.1| Leishmania infantum chromosome 3 39 0.45
ref|XM_001687311.1| Leishmania major hypothetical protein, conse... 39 0.50
gb|AC125735.1| Leishmania major strain Friedlin chromosome 3, co... 39 0.50
ref|XM_838760.1| Trypanosoma brucei ATP-dependent DEAD/H RNA hel... 39 0.80
gb|AC091330.18| Trypanosoma brucei chromosome 3 clone RPCI93-48O... 39 0.80
>ref|XM_001561599.1| Leishmania braziliensis MHOM/BR/75/M2904 hypothetical protein,
conserved (LbrM03_V2.0590) partial mRNA
Length = 6624
Score = 96.3 bits (238), Expect = 3e-18, Method: Composition-based stats.
Identities = 80/146 (54%), Positives = 80/146 (54%)
Frame = -3
Query: 21 HTRRRCRGCPQYRAAPAATHQGURERGSPSLESPASPGGGPCTUAASFLACQRRPFAVXX 80
HTRRRCRGCPQYRAAPAATHQG RERGSPSLESPASPGGGPCT AASFLACQRRPFAV
Sbjct: 3298 HTRRRCRGCPQYRAAPAATHQG*RERGSPSLESPASPGGGPCT*AASFLACQRRPFAVGG 3119
Query: 81 XXXXXXXXXXXXTWUSPRPPFRNTXXXXXXXXXXXXXXXXXXXXXXXXXXXYKRALYDXX 140
TW SPRPPFRNT YKRALYD
Sbjct: 3118 GSAAGRRRGCSATW*SPRPPFRNTRPGSRSARGRSAPSRGRPSRSPRRCRGYKRALYDGS 2939
Query: 141 XXXXXXXXXXWEXXXXXXXXXXRSST 166
WE RSST
Sbjct: 2938 RGRAGRRLGGWEAPAPAAPAPARSST 2861
>emb|AM494940.1| Leishmania braziliensis chromosome 3
Length = 388728
Score = 96.3 bits (238), Expect = 3e-18, Method: Composition-based stats.
Identities = 80/146 (54%), Positives = 80/146 (54%)
Frame = +1
Query: 21 HTRRRCRGCPQYRAAPAATHQGURERGSPSLESPASPGGGPCTUAASFLACQRRPFAVXX 80
HTRRRCRGCPQYRAAPAATHQG RERGSPSLESPASPGGGPCT AASFLACQRRPFAV
Sbjct: 217579 HTRRRCRGCPQYRAAPAATHQG*RERGSPSLESPASPGGGPCT*AASFLACQRRPFAVGG 217758
Query: 81 XXXXXXXXXXXXTWUSPRPPFRNTXXXXXXXXXXXXXXXXXXXXXXXXXXXYKRALYDXX 140
TW SPRPPFRNT YKRALYD
Sbjct: 217759 GSAAGRRRGCSATW*SPRPPFRNTRPGSRSARGRSAPSRGRPSRSPRRCRGYKRALYDGS 217938
Query: 141 XXXXXXXXXXWEXXXXXXXXXXRSST 166
WE RSST
Sbjct: 217939 RGRAGRRLGGWEAPAPAAPAPARSST 218016
>ref|XM_001462762.1| Leishmania infantum hypothetical protein, conserved (LinJ03.0310)
partial mRNA
Length = 6633
Score = 39.3 bits (90), Expect = 0.45, Method: Composition-based stats.
Identities = 51/84 (60%), Positives = 53/84 (63%)
Frame = -3
Query: 21 HTRRRCRGCPQYRAAPAATHQGURERGSPSLESPASPGGGPCTUAASFLACQRRPFAVXX 80
HTRRRCRGC + RAAPAATHQG R GSPSLESPASPGGGPC AAS A Q P A
Sbjct: 3298 HTRRRCRGCRRCRAAPAATHQG*RGHGSPSLESPASPGGGPCPSAASSPASQSMPSAAGG 3119
Query: 81 XXXXXXXXXXXXTWUSPRPPFRNT 104
TW RPPFR+T
Sbjct: 3118 GSAAGRRRRCSATWLWRRPPFRST 3047
>emb|AM502221.1| Leishmania infantum chromosome 3
Length = 294508
Score = 39.3 bits (90), Expect = 0.45, Method: Composition-based stats.
Identities = 51/84 (60%), Positives = 53/84 (63%)
Frame = +1
Query: 21 HTRRRCRGCPQYRAAPAATHQGURERGSPSLESPASPGGGPCTUAASFLACQRRPFAVXX 80
HTRRRCRGC + RAAPAATHQG R GSPSLESPASPGGGPC AAS A Q P A
Sbjct: 125935 HTRRRCRGCRRCRAAPAATHQG*RGHGSPSLESPASPGGGPCPSAASSPASQSMPSAAGG 126114
Query: 81 XXXXXXXXXXXXTWUSPRPPFRNT 104
TW RPPFR+T
Sbjct: 126115 GSAAGRRRRCSATWLWRRPPFRST 126186
>ref|XM_001687311.1| Leishmania major hypothetical protein, conserved (LmjF03.0690)
partial mRNA
Length = 6636
Score = 38.9 bits (89), Expect = 0.50, Method: Composition-based stats.
Identities = 36/71 (50%), Positives = 39/71 (54%)
Frame = -3
Query: 34 AAPAATHQGURERGSPSLESPASPGGGPCTUAASFLACQRRPFAVXXXXXXXXXXXXXXT 93
AAPAAT QG R GSPSLESPASPGGGP + AAS + P A T
Sbjct: 3262 AAPAATRQG*RRHGSPSLESPASPGGGPWSSAASSPGSRSTPSAAGGGSAAGRRRRCSAT 3083
Query: 94 WUSPRPPFRNT 104
W PPFR+T
Sbjct: 3082 WLWRHPPFRST 3050
>gb|AC125735.1| Leishmania major strain Friedlin chromosome 3, complete sequence
Length = 384518
Score = 38.9 bits (89), Expect = 0.50, Method: Composition-based stats.
Identities = 36/71 (50%), Positives = 39/71 (54%)
Frame = +3
Query: 34 AAPAATHQGURERGSPSLESPASPGGGPCTUAASFLACQRRPFAVXXXXXXXXXXXXXXT 93
AAPAAT QG R GSPSLESPASPGGGP + AAS + P A T
Sbjct: 263553 AAPAATRQG*RRHGSPSLESPASPGGGPWSSAASSPGSRSTPSAAGGGSAAGRRRRCSAT 263732
Query: 94 WUSPRPPFRNT 104
W PPFR+T
Sbjct: 263733 WLWRHPPFRST 263765
>ref|XM_838760.1| Trypanosoma brucei ATP-dependent DEAD/H RNA helicase, putative
(Tb927.3.2600) partial mRNA
Length = 6513
Score = 38.5 bits (88), Expect = 0.80, Method: Composition-based stats.
Identities = 23/52 (44%), Positives = 30/52 (57%)
Frame = -3
Query: 21 HTRRRCRGCPQYRAAPAATHQGURERGSPSLESPASPGGGPCTUAASFLACQ 72
HT + R CP+ + A AA G R+RG+ E PA+ G PC ASFL C+
Sbjct: 3136 HTLQHSRDCPRCQGALAANCLG*RQRGNRVFE*PAAQAGVPCE*VASFLVCR 2981
>gb|AC091330.18| Trypanosoma brucei chromosome 3 clone RPCI93-48O8, complete sequence
Length = 138368
Score = 38.5 bits (88), Expect = 0.80, Method: Composition-based stats.
Identities = 23/52 (44%), Positives = 30/52 (57%)
Frame = -3
Query: 21 HTRRRCRGCPQYRAAPAATHQGURERGSPSLESPASPGGGPCTUAASFLACQ 72
HT + R CP+ + A AA G R+RG+ E PA+ G PC ASFL C+
Sbjct: 47259 HTLQHSRDCPRCQGALAANCLG*RQRGNRVFE*PAAQAGVPCE*VASFLVCR 47104
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.320 0.132 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 310604950
Number of extensions: 4605082
Number of successful extensions: 56339
Number of sequences better than 10: 11
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 56197
Number of HSP's successfully gapped: 11
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 16 (7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 78 (34.7 bits)
Query= gi|154331742|ref|NC_009296.1|:subseq(236759,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 3:[revcomp]
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
ref|XM_001561584.1| Leishmania braziliensis MHOM/BR/75/M2904 hyp... 103 2e-20
emb|AM494940.1| Leishmania braziliensis chromosome 3 103 2e-20
ref|XM_001467509.1| Leishmania infantum JPCM5 hypothetical prote... 66 3e-09
emb|AM502249.1| Leishmania infantum chromosome 31 66 3e-09
ref|XM_001687295.1| Leishmania major hypothetical protein, conse... 61 1e-07
gb|AC125735.1| Leishmania major strain Friedlin chromosome 3, co... 61 1e-07
>ref|XM_001561584.1| Leishmania braziliensis MHOM/BR/75/M2904 hypothetical protein,
conserved (LbrM03_V2.0440) partial mRNA
Length = 5553
Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats.
Identities = 96/166 (57%), Positives = 96/166 (57%)
Frame = -3
Query: 1 ACLPUWRTQIPLVAPAGGGRASVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCSDASU 60
ACLP WRTQIPLVAPAGGGRASV CSDAS
Sbjct: 1720 ACLP*WRTQIPLVAPAGGGRASVRRRP*CQAAAAPRQ*SPEAAAARASLAVGPACSDAS* 1541
Query: 61 SDARWTHRRRDALGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDARHHGTPA 120
SDARWTHRRRDALGS DARHHGTPA
Sbjct: 1540 SDARWTHRRRDALGSGRGGTV*RRPPCTPPVLPQTLSRPSRAPLSPS*CRADARHHGTPA 1361
Query: 121 SARYRRGRPPAPLCGCADSPWCSRQARVARUSSGDATRMACAPPFP 166
SARYRRGRPPAPLCGCADSPWCSRQARVAR SSGDATRMACAPPFP
Sbjct: 1360 SARYRRGRPPAPLCGCADSPWCSRQARVAR*SSGDATRMACAPPFP 1223
>emb|AM494940.1| Leishmania braziliensis chromosome 3
Length = 388728
Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats.
Identities = 96/166 (57%), Positives = 96/166 (57%)
Frame = -3
Query: 1 ACLPUWRTQIPLVAPAGGGRASVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCSDASU 60
ACLP WRTQIPLVAPAGGGRASV CSDAS
Sbjct: 151969 ACLP*WRTQIPLVAPAGGGRASVRRRP*CQAAAAPRQ*SPEAAAARASLAVGPACSDAS* 151790
Query: 61 SDARWTHRRRDALGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDARHHGTPA 120
SDARWTHRRRDALGS DARHHGTPA
Sbjct: 151789 SDARWTHRRRDALGSGRGGTV*RRPPCTPPVLPQTLSRPSRAPLSPS*CRADARHHGTPA 151610
Query: 121 SARYRRGRPPAPLCGCADSPWCSRQARVARUSSGDATRMACAPPFP 166
SARYRRGRPPAPLCGCADSPWCSRQARVAR SSGDATRMACAPPFP
Sbjct: 151609 SARYRRGRPPAPLCGCADSPWCSRQARVAR*SSGDATRMACAPPFP 151472
>ref|XM_001467509.1| Leishmania infantum JPCM5 hypothetical protein (LinJ31.2880) partial
mRNA
Length = 6462
Score = 66.2 bits (160), Expect = 3e-09, Method: Composition-based stats.
Identities = 75/164 (45%), Positives = 78/164 (47%)
Frame = -3
Query: 1 ACLPUWRTQIPLVAPAGGGRASVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCSDASU 60
ACLP WRTQ P A AGGG+A+ CS AS
Sbjct: 2623 ACLPRWRTQAPAAALAGGGKAAARRRL*CLAAAAPRQ*SREAAAVRALLAAGLACSCAS* 2444
Query: 61 SDARWTHRRRDALGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDARHHGTPA 120
SDARWT RRRDALGS DARH GT A
Sbjct: 2443 SDARWTRRRRDALGSDRGGKE*KRLPCTPPALPQTSSRPSRAPLSPS*CRADARHRGTLA 2264
Query: 121 SARYRRGRPPAPLCGCADSPWCSRQARVARUSSGDATRMACAPP 164
SAR+ RGRPPAP CGCA SP CSRQAR AR SSG ATR ACAPP
Sbjct: 2263 SARHHRGRPPAPPCGCAGSP*CSRQARAAR*SSGGATRRACAPP 2132
>emb|AM502249.1| Leishmania infantum chromosome 31
Length = 1744348
Score = 66.2 bits (160), Expect = 3e-09, Method: Composition-based stats.
Identities = 75/164 (45%), Positives = 78/164 (47%)
Frame = +3
Query: 1 ACLPUWRTQIPLVAPAGGGRASVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCSDASU 60
ACLP WRTQ P A AGGG+A+ CS AS
Sbjct: 1342797 ACLPRWRTQAPAAALAGGGKAAARRRL*CLAAAAPRQ*SREAAAVRALLAAGLACSCAS* 1342976
Query: 61 SDARWTHRRRDALGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDARHHGTPA 120
SDARWT RRRDALGS DARH GT A
Sbjct: 1342977 SDARWTRRRRDALGSDRGGKE*KRLPCTPPALPQTSSRPSRAPLSPS*CRADARHRGTLA 1343156
Query: 121 SARYRRGRPPAPLCGCADSPWCSRQARVARUSSGDATRMACAPP 164
SAR+ RGRPPAP CGCA SP CSRQAR AR SSG ATR ACAPP
Sbjct: 1343157 SARHHRGRPPAPPCGCAGSP*CSRQARAAR*SSGGATRRACAPP 1343288
>ref|XM_001687295.1| Leishmania major hypothetical protein, conserved (LmjF03.0530)
partial mRNA
Length = 6252
Score = 60.8 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 74/165 (44%), Positives = 79/165 (47%)
Frame = -3
Query: 1 ACLPUWRTQIPLVAPAGGGRASVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCSDASU 60
ACLP WRT+ P A AGGG+A+V CS AS
Sbjct: 2392 ACLPRWRTRAPAAALAGGGKAAVRRRL*CPVAAAPRR*SPEAAAVRALLAAGPACSCAS* 2213
Query: 61 SDARWTHRRRDALGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDARHHGTPA 120
SDA+WT RRRDALGS DARH GT A
Sbjct: 2212 SDAQWTRRRRDALGSDRGGKE*RRLPCTPPALPQTLSRPSRAPLSPS*CRADARHRGTLA 2033
Query: 121 SARYRRGRPPAPLCGCADSPWCSRQARVARUSSGDATRMACAPPF 165
SAR+RRGRPP LCGCA SP CSRQAR AR SSG ATR ACAPP
Sbjct: 2032 SARHRRGRPPDLLCGCAGSP*CSRQARAAR*SSGGATRRACAPPL 1898
>gb|AC125735.1| Leishmania major strain Friedlin chromosome 3, complete sequence
Length = 384518
Score = 60.8 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 74/165 (44%), Positives = 79/165 (47%)
Frame = -2
Query: 1 ACLPUWRTQIPLVAPAGGGRASVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCSDASU 60
ACLP WRT+ P A AGGG+A+V CS AS
Sbjct: 196399 ACLPRWRTRAPAAALAGGGKAAVRRRL*CPVAAAPRR*SPEAAAVRALLAAGPACSCAS* 196220
Query: 61 SDARWTHRRRDALGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDARHHGTPA 120
SDA+WT RRRDALGS DARH GT A
Sbjct: 196219 SDAQWTRRRRDALGSDRGGKE*RRLPCTPPALPQTLSRPSRAPLSPS*CRADARHRGTLA 196040
Query: 121 SARYRRGRPPAPLCGCADSPWCSRQARVARUSSGDATRMACAPPF 165
SAR+RRGRPP LCGCA SP CSRQAR AR SSG ATR ACAPP
Sbjct: 196039 SARHRRGRPPDLLCGCAGSP*CSRQARAAR*SSGGATRRACAPPL 195905
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.322 0.132 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 423193024
Number of extensions: 5697791
Number of successful extensions: 69548
Number of sequences better than 10: 11
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 69422
Number of HSP's successfully gapped: 15
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 16 (7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 78 (34.7 bits)
Query= gi|154331742|ref|NC_009296.1|:subseq(236759,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 3:[revcomp]
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
ref|XM_001561584.1| Leishmania braziliensis MHOM/BR/75/M2904 hyp... 279 3e-73
emb|AM494940.1| Leishmania braziliensis chromosome 3 279 3e-73
ref|XM_001687295.1| Leishmania major hypothetical protein, conse... 194 6e-48
gb|AC125735.1| Leishmania major strain Friedlin chromosome 3, co... 194 6e-48
ref|XM_001467509.1| Leishmania infantum JPCM5 hypothetical prote... 179 3e-43
emb|AM502249.1| Leishmania infantum chromosome 31 179 3e-43
ref|XM_817507.1| Trypanosoma brucei TREU927 hypothetical protein... 62 6e-08
ref|XM_812558.1| Trypanosoma cruzi strain CL Brener hypothetical... 43 0.028
ref|XM_808731.1| Trypanosoma cruzi strain CL Brener hypothetical... 40 0.19
>ref|XM_001561584.1| Leishmania braziliensis MHOM/BR/75/M2904 hypothetical protein,
conserved (LbrM03_V2.0440) partial mRNA
Length = 5553
Score = 279 bits (713), Expect = 3e-73, Method: Composition-based stats.
Identities = 165/166 (99%), Positives = 165/166 (99%)
Frame = -1
Query: 1 LVFHDGELKFHWSPQQAAEEHRUDVGPDVKQQPHLVSEAQKQLRRVHRSQ*GQHAPTRHD 60
LVFHDGELKFHWSPQQAAEEHR DVGPDVKQQPHLVSEAQKQLRRVHRSQ*GQHAPTRHD
Sbjct: 1719 LVFHDGELKFHWSPQQAAEEHR*DVGPDVKQQPHLVSEAQKQLRRVHRSQ*GQHAPTRHD 1540
Query: 61 RMPGGLIGEEMLWVAAAEERYEDVLHARRLCFRRRCHDHHVLRFHRHDAAPMHVITVRRL 120
RMPGGLIGEEMLWVAAAEERYEDVLHARRLCFRRRCHDHHVLRFHRHDAAPMHVITVRRL
Sbjct: 1539 RMPGGLIGEEMLWVAAAEERYEDVLHARRLCFRRRCHDHHVLRFHRHDAAPMHVITVRRL 1360
Query: 121 QHDIAEADLPPRFADALTRHGVPDKPA*RVDPAATPHVWRAHHRFL 166
QHDIAEADLPPRFADALTRHGVPDKPA*RVDPAATPHVWRAHHRFL
Sbjct: 1359 QHDIAEADLPPRFADALTRHGVPDKPA*RVDPAATPHVWRAHHRFL 1222
>emb|AM494940.1| Leishmania braziliensis chromosome 3
Length = 388728
Score = 279 bits (713), Expect = 3e-73, Method: Composition-based stats.
Identities = 165/166 (99%), Positives = 165/166 (99%)
Frame = -1
Query: 1 LVFHDGELKFHWSPQQAAEEHRUDVGPDVKQQPHLVSEAQKQLRRVHRSQ*GQHAPTRHD 60
LVFHDGELKFHWSPQQAAEEHR DVGPDVKQQPHLVSEAQKQLRRVHRSQ*GQHAPTRHD
Sbjct: 151968 LVFHDGELKFHWSPQQAAEEHR*DVGPDVKQQPHLVSEAQKQLRRVHRSQ*GQHAPTRHD 151789
Query: 61 RMPGGLIGEEMLWVAAAEERYEDVLHARRLCFRRRCHDHHVLRFHRHDAAPMHVITVRRL 120
RMPGGLIGEEMLWVAAAEERYEDVLHARRLCFRRRCHDHHVLRFHRHDAAPMHVITVRRL
Sbjct: 151788 RMPGGLIGEEMLWVAAAEERYEDVLHARRLCFRRRCHDHHVLRFHRHDAAPMHVITVRRL 151609
Query: 121 QHDIAEADLPPRFADALTRHGVPDKPA*RVDPAATPHVWRAHHRFL 166
QHDIAEADLPPRFADALTRHGVPDKPA*RVDPAATPHVWRAHHRFL
Sbjct: 151608 QHDIAEADLPPRFADALTRHGVPDKPA*RVDPAATPHVWRAHHRFL 151471
>ref|XM_001687295.1| Leishmania major hypothetical protein, conserved (LmjF03.0530)
partial mRNA
Length = 6252
Score = 194 bits (494), Expect = 6e-48, Method: Composition-based stats.
Identities = 126/164 (76%), Positives = 130/164 (79%)
Frame = -1
Query: 1 LVFHDGELKFHWSPQQAAEEHRUDVGPDVKQQPHLVSEAQKQLRRVHRSQ*GQHAPTRHD 60
LVF DGEL+ QAAE+ R DVG DV+ QP LV EAQKQLR VH SQ GQH RHD
Sbjct: 2391 LVFQDGELEPQRPH*QAAEKQR*DVGSDVQ*QPRLVGEAQKQLRCVHCSQQGQHVRARHD 2212
Query: 61 RMPGGLIGEEMLWVAAAEERYEDVLHARRLCFRRRCHDHHVLRFHRHDAAPMHVITVRRL 120
RMP GL+GEEMLWVA AEER EDV HARRL FRRRCHDHHVLRFHRHDAAPMHVI V L
Sbjct: 2211 RMPSGLVGEEMLWVATAEERNEDVFHARRLRFRRRCHDHHVLRFHRHDAAPMHVIAVLWL 2032
Query: 121 QHDIAEADLPPRFADALTRHGVPDKPA*RVDPAATPHVWRAHHR 164
QHDIAEADLP FADAL RH VPDKPA RVDPAA PHV RAHHR
Sbjct: 2031 QHDIAEADLPTCFADALARHSVPDKPAQRVDPAAAPHVGRAHHR 1900
>gb|AC125735.1| Leishmania major strain Friedlin chromosome 3, complete sequence
Length = 384518
Score = 194 bits (494), Expect = 6e-48, Method: Composition-based stats.
Identities = 126/164 (76%), Positives = 130/164 (79%)
Frame = -3
Query: 1 LVFHDGELKFHWSPQQAAEEHRUDVGPDVKQQPHLVSEAQKQLRRVHRSQ*GQHAPTRHD 60
LVF DGEL+ QAAE+ R DVG DV+ QP LV EAQKQLR VH SQ GQH RHD
Sbjct: 196398 LVFQDGELEPQRPH*QAAEKQR*DVGSDVQ*QPRLVGEAQKQLRCVHCSQQGQHVRARHD 196219
Query: 61 RMPGGLIGEEMLWVAAAEERYEDVLHARRLCFRRRCHDHHVLRFHRHDAAPMHVITVRRL 120
RMP GL+GEEMLWVA AEER EDV HARRL FRRRCHDHHVLRFHRHDAAPMHVI V L
Sbjct: 196218 RMPSGLVGEEMLWVATAEERNEDVFHARRLRFRRRCHDHHVLRFHRHDAAPMHVIAVLWL 196039
Query: 121 QHDIAEADLPPRFADALTRHGVPDKPA*RVDPAATPHVWRAHHR 164
QHDIAEADLP FADAL RH VPDKPA RVDPAA PHV RAHHR
Sbjct: 196038 QHDIAEADLPTCFADALARHSVPDKPAQRVDPAAAPHVGRAHHR 195907
>ref|XM_001467509.1| Leishmania infantum JPCM5 hypothetical protein (LinJ31.2880) partial
mRNA
Length = 6462
Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats.
Identities = 127/164 (77%), Positives = 131/164 (79%)
Frame = -1
Query: 1 LVFHDGELKFHWSPQQAAEEHRUDVGPDVKQQPHLVSEAQKQLRRVHRSQ*GQHAPTRHD 60
LVF DGELK QAAE+ R DVG DV QQPHLVSEA+KQLR VH SQ G H RHD
Sbjct: 2622 LVFQDGELKLQRPH*QAAEKQRRDVGSDV*QQPHLVSEAEKQLRCVHCSQQG*HVRARHD 2443
Query: 61 RMPGGLIGEEMLWVAAAEERYEDVLHARRLCFRRRCHDHHVLRFHRHDAAPMHVITVRRL 120
RMPGGL+GEEMLWVA AEER E+V HARRL FRRR HDHHVLRFHRHDAAPMHVI V L
Sbjct: 2442 RMPGGLVGEEMLWVATAEERNENVFHARRLRFRRRRHDHHVLRFHRHDAAPMHVIAVLWL 2263
Query: 121 QHDIAEADLPPRFADALTRHGVPDKPA*RVDPAATPHVWRAHHR 164
QHDI EADLPPR ADAL RH VPDKPA RVDPAA PHV RAHHR
Sbjct: 2262 QHDITEADLPPRLADALARHSVPDKPAQRVDPAAAPHVGRAHHR 2131
>emb|AM502249.1| Leishmania infantum chromosome 31
Length = 1744348
Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats.
Identities = 127/164 (77%), Positives = 131/164 (79%)
Frame = +1
Query: 1 LVFHDGELKFHWSPQQAAEEHRUDVGPDVKQQPHLVSEAQKQLRRVHRSQ*GQHAPTRHD 60
LVF DGELK QAAE+ R DVG DV QQPHLVSEA+KQLR VH SQ G H RHD
Sbjct: 1342798 LVFQDGELKLQRPH*QAAEKQRRDVGSDV*QQPHLVSEAEKQLRCVHCSQQG*HVRARHD 1342977
Query: 61 RMPGGLIGEEMLWVAAAEERYEDVLHARRLCFRRRCHDHHVLRFHRHDAAPMHVITVRRL 120
RMPGGL+GEEMLWVA AEER E+V HARRL FRRR HDHHVLRFHRHDAAPMHVI V L
Sbjct: 1342978 RMPGGLVGEEMLWVATAEERNENVFHARRLRFRRRRHDHHVLRFHRHDAAPMHVIAVLWL 1343157
Query: 121 QHDIAEADLPPRFADALTRHGVPDKPA*RVDPAATPHVWRAHHR 164
QHDI EADLPPR ADAL RH VPDKPA RVDPAA PHV RAHHR
Sbjct: 1343158 QHDITEADLPPRLADALARHSVPDKPAQRVDPAAAPHVGRAHHR 1343289
>ref|XM_817507.1| Trypanosoma brucei TREU927 hypothetical protein (Tb10.70.3940)
partial mRNA
Length = 5409
Score = 62.0 bits (149), Expect = 6e-08, Method: Composition-based stats.
Identities = 50/153 (32%), Positives = 72/153 (47%), Gaps = 2/153 (1%)
Frame = -1
Query: 13 SPQQAAEEHRUDVGPDVKQQPHLVSEAQKQLRRVHRSQ*GQHAPTRHDRMPGGLIGEEML 72
S +A E+ R + DV Q + QK LR + + HA H+RM L ++
Sbjct: 2298 SDYKATEKERCTITTDVHQLTTSIIHTQK*LRCMQLPKNC*HARICHNRMLCFLRCKQFR 2119
Query: 73 WVAAAEERYEDVLHARRLCFRRRCHDHHVLRFHRHDAAPMHVITVRRLQHDIAEADLPPR 132
WV +ER + CF +DHHVL H D A M + T+ R ++DI D P R
Sbjct: 2118 WVGPPKERNTYIFDTTECCFLFVTNDHHVLCLHCWDHAVMDISTIFRAENDIPRNDSP*R 1939
Query: 133 FA--DALTRHGVPDKPA*RVDPAATPHVWRAHH 163
+ RH VPD+ + + PA+TP+V H
Sbjct: 1938 TIK*QSPRRHNVPDRASQSI*PASTPNVRYPRH 1840
>ref|XM_812558.1| Trypanosoma cruzi strain CL Brener hypothetical protein partial mRNA
Length = 5268
Score = 43.1 bits (100), Expect = 0.028, Method: Composition-based stats.
Identities = 39/161 (24%), Positives = 68/161 (42%)
Frame = -1
Query: 1 LVFHDGELKFHWSPQQAAEEHRUDVGPDVKQQPHLVSEAQKQLRRVHRSQ*GQHAPTRHD 60
LV D E + + + A++ R +VK ++ A++ L V ++ QH + H+
Sbjct: 2340 LVLKDSESYINRTNNKTAKQQRR*FAANVK**TTGIAHAKQ*LWGVCLTKKSQHIRSCHN 2161
Query: 61 RMPGGLIGEEMLWVAAAEERYEDVLHARRLCFRRRCHDHHVLRFHRHDAAPMHVITVRRL 120
R+ G ++ V + ++ ED+L H H + R + A M + TV
Sbjct: 2160 RVLRGFRCKKFRGVDSTKKWDEDILQTTFRGLSFISHQHDMFRLYCCKHATMGISTVLWT 1981
Query: 121 QHDIAEADLPPRFADALTRHGVPDKPA*RVDPAATPHVWRA 161
HDI D P RH +P + P P++WR+
Sbjct: 1980 *HDITWKDTTPAVT*TPRRHHIPHRTTECTQPTPPPYIWRS 1858
>ref|XM_808731.1| Trypanosoma cruzi strain CL Brener hypothetical protein partial mRNA
Length = 5268
Score = 40.4 bits (93), Expect = 0.19, Method: Composition-based stats.
Identities = 39/161 (24%), Positives = 68/161 (42%)
Frame = -1
Query: 1 LVFHDGELKFHWSPQQAAEEHRUDVGPDVKQQPHLVSEAQKQLRRVHRSQ*GQHAPTRHD 60
LV D E + + + A++ R +VK ++ A++ L V ++ QH + H+
Sbjct: 2340 LVLKDSESYINRTNNKTAKQQRR*FAANVK**TTGIAHAKQ*LWGVCLTKKSQHIRSGHN 2161
Query: 61 RMPGGLIGEEMLWVAAAEERYEDVLHARRLCFRRRCHDHHVLRFHRHDAAPMHVITVRRL 120
R+ ++ V + ++ ED+L R H H + R + A M + TV
Sbjct: 2160 RVLRVFRCKKFGRVDSTKKWDEDILQTTFRGLRFIIHQHDMFRLYCCKHATMGISTVLWT 1981
Query: 121 QHDIAEADLPPRFADALTRHGVPDKPA*RVDPAATPHVWRA 161
HDI D RH +P + A P P++WR+
Sbjct: 1980 *HDITWKDTTSAVT*TPRRHHIPHRTAEGTQPTPPPYIWRS 1858
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.332 0.142 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 654891887
Number of extensions: 11413913
Number of successful extensions: 61388
Number of sequences better than 10: 3
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 61232
Number of HSP's successfully gapped: 3
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 15 (7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.0 bits)
S2: 78 (34.7 bits)
Query= gi|154331742|ref|NC_009296.1|:subseq(236759,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 3:[revcomp]
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
ref|XM_001561584.1| Leishmania braziliensis MHOM/BR/75/M2904 hyp... 195 4e-48
emb|AM494940.1| Leishmania braziliensis chromosome 3 195 4e-48
ref|XM_001687295.1| Leishmania major hypothetical protein, conse... 164 1e-38
gb|AC125735.1| Leishmania major strain Friedlin chromosome 3, co... 164 1e-38
ref|XM_001467509.1| Leishmania infantum JPCM5 hypothetical prote... 155 6e-36
emb|AM502249.1| Leishmania infantum chromosome 31 155 6e-36
ref|XM_812558.1| Trypanosoma cruzi strain CL Brener hypothetical... 97 2e-18
ref|XM_808731.1| Trypanosoma cruzi strain CL Brener hypothetical... 96 3e-18
ref|XM_817507.1| Trypanosoma brucei TREU927 hypothetical protein... 60 3e-07
>ref|XM_001561584.1| Leishmania braziliensis MHOM/BR/75/M2904 hypothetical protein,
conserved (LbrM03_V2.0440) partial mRNA
Length = 5553
Score = 195 bits (495), Expect = 4e-48, Method: Composition-based stats.
Identities = 146/166 (87%), Positives = 146/166 (87%)
Frame = -2
Query: 1 LSSMMANSNSTGRPSRRRKSIGETXXXXXXXXXXXXXXXXXXCGACIARSRASMLRRVMI 60
LSSMMANSNSTGRPSRRRKSIGET CGACIARSRASMLRRVMI
Sbjct: 1718 LSSMMANSNSTGRPSRRRKSIGETSALMSSSSRTSSVKPRSSCGACIARSRASMLRRVMI 1539
Query: 61 GCPVDSSAKRCSGXRPRRNGMKTSSMHAACASADVVTTITCSAFTVMMPRRCTSSRYAGF 120
GCPVDSSAKRCSG RPRRNGMKTSSMHAACASADVVTTITCSAFTVMMPRRCTSSRYAGF
Sbjct: 1538 GCPVDSSAKRCSG*RPRRNGMKTSSMHAACASADVVTTITCSAFTVMMPRRCTSSRYAGF 1359
Query: 121 STISPRQTSRPALRMRULAMVFQTSPRSALIQRRRHTYGVRTTVSC 166
STISPRQTSRPALRMR LAMVFQTSPRSALIQRRRHTYGVRTTVSC
Sbjct: 1358 STISPRQTSRPALRMR*LAMVFQTSPRSALIQRRRHTYGVRTTVSC 1221
>emb|AM494940.1| Leishmania braziliensis chromosome 3
Length = 388728
Score = 195 bits (495), Expect = 4e-48, Method: Composition-based stats.
Identities = 146/166 (87%), Positives = 146/166 (87%)
Frame = -2
Query: 1 LSSMMANSNSTGRPSRRRKSIGETXXXXXXXXXXXXXXXXXXCGACIARSRASMLRRVMI 60
LSSMMANSNSTGRPSRRRKSIGET CGACIARSRASMLRRVMI
Sbjct: 151967 LSSMMANSNSTGRPSRRRKSIGETSALMSSSSRTSSVKPRSSCGACIARSRASMLRRVMI 151788
Query: 61 GCPVDSSAKRCSGXRPRRNGMKTSSMHAACASADVVTTITCSAFTVMMPRRCTSSRYAGF 120
GCPVDSSAKRCSG RPRRNGMKTSSMHAACASADVVTTITCSAFTVMMPRRCTSSRYAGF
Sbjct: 151787 GCPVDSSAKRCSG*RPRRNGMKTSSMHAACASADVVTTITCSAFTVMMPRRCTSSRYAGF 151608
Query: 121 STISPRQTSRPALRMRULAMVFQTSPRSALIQRRRHTYGVRTTVSC 166
STISPRQTSRPALRMR LAMVFQTSPRSALIQRRRHTYGVRTTVSC
Sbjct: 151607 STISPRQTSRPALRMR*LAMVFQTSPRSALIQRRRHTYGVRTTVSC 151470
>ref|XM_001687295.1| Leishmania major hypothetical protein, conserved (LmjF03.0530)
partial mRNA
Length = 6252
Score = 164 bits (414), Expect = 1e-38, Method: Composition-based stats.
Identities = 132/166 (79%), Positives = 137/166 (82%)
Frame = -2
Query: 1 LSSMMANSNSTGRPSRRRKSIGETXXXXXXXXXXXXXXXXXXCGACIARSRASMLRRVMI 60
LSS MANS+ +GR SRRRKS GET CGACIARSRASM RVMI
Sbjct: 2390 LSSKMANSSPSGRTSRRRKSSGETSALMSSSSRASSVKPRSSCGACIARSRASMFVRVMI 2211
Query: 61 GCPVDSSAKRCSGXRPRRNGMKTSSMHAACASADVVTTITCSAFTVMMPRRCTSSRYAGF 120
GCPVDSSAKRCSG RPRR GMKTSSMHAACASADVVTTITCSAFTVMMPRRCTSSRY+GF
Sbjct: 2210 GCPVDSSAKRCSG*RPRRKGMKTSSMHAACASADVVTTITCSAFTVMMPRRCTSSRYSGF 2031
Query: 121 STISPRQTSRPALRMRULAMVFQTSPRSALIQRRRHTYGVRTTVSC 166
ST SPRQTSRPALRMR LA+VFQTSPRSALIQRRRHT GVRTTV+C
Sbjct: 2030 STTSPRQTSRPALRMRWLAIVFQTSPRSALIQRRRHT*GVRTTVAC 1893
>gb|AC125735.1| Leishmania major strain Friedlin chromosome 3, complete sequence
Length = 384518
Score = 164 bits (414), Expect = 1e-38, Method: Composition-based stats.
Identities = 132/166 (79%), Positives = 137/166 (82%)
Frame = -1
Query: 1 LSSMMANSNSTGRPSRRRKSIGETXXXXXXXXXXXXXXXXXXCGACIARSRASMLRRVMI 60
LSS MANS+ +GR SRRRKS GET CGACIARSRASM RVMI
Sbjct: 196397 LSSKMANSSPSGRTSRRRKSSGETSALMSSSSRASSVKPRSSCGACIARSRASMFVRVMI 196218
Query: 61 GCPVDSSAKRCSGXRPRRNGMKTSSMHAACASADVVTTITCSAFTVMMPRRCTSSRYAGF 120
GCPVDSSAKRCSG RPRR GMKTSSMHAACASADVVTTITCSAFTVMMPRRCTSSRY+GF
Sbjct: 196217 GCPVDSSAKRCSG*RPRRKGMKTSSMHAACASADVVTTITCSAFTVMMPRRCTSSRYSGF 196038
Query: 121 STISPRQTSRPALRMRULAMVFQTSPRSALIQRRRHTYGVRTTVSC 166
ST SPRQTSRPALRMR LA+VFQTSPRSALIQRRRHT GVRTTV+C
Sbjct: 196037 STTSPRQTSRPALRMRWLAIVFQTSPRSALIQRRRHT*GVRTTVAC 195900
>ref|XM_001467509.1| Leishmania infantum JPCM5 hypothetical protein (LinJ31.2880) partial
mRNA
Length = 6462
Score = 155 bits (391), Expect = 6e-36, Method: Composition-based stats.
Identities = 117/145 (80%), Positives = 120/145 (82%)
Frame = -2
Query: 22 GETXXXXXXXXXXXXXXXXXXCGACIARSRASMLRRVMIGCPVDSSAKRCSGXRPRRNGM 81
GET CGACIARSRASM RVMIGCPVDSSAKRCSG RPRR GM
Sbjct: 2558 GETSALMSSSSRTSSVKPRSSCGACIARSRASMFVRVMIGCPVDSSAKRCSG*RPRRKGM 2379
Query: 82 KTSSMHAACASADVVTTITCSAFTVMMPRRCTSSRYAGFSTISPRQTSRPALRMRULAMV 141
KTSSMHAACASADVVTTITCSAFTVMMPRRCTSSRY+GFST SPRQTSRPALRMR LA+V
Sbjct: 2378 KTSSMHAACASADVVTTITCSAFTVMMPRRCTSSRYSGFSTTSPRQTSRPALRMRWLAIV 2199
Query: 142 FQTSPRSALIQRRRHTYGVRTTVSC 166
FQTSPRSALIQRRRHT GVRTTV+C
Sbjct: 2198 FQTSPRSALIQRRRHT*GVRTTVAC 2124
>emb|AM502249.1| Leishmania infantum chromosome 31
Length = 1744348
Score = 155 bits (391), Expect = 6e-36, Method: Composition-based stats.
Identities = 117/145 (80%), Positives = 120/145 (82%)
Frame = +2
Query: 22 GETXXXXXXXXXXXXXXXXXXCGACIARSRASMLRRVMIGCPVDSSAKRCSGXRPRRNGM 81
GET CGACIARSRASM RVMIGCPVDSSAKRCSG RPRR GM
Sbjct: 1342862 GETSALMSSSSRTSSVKPRSSCGACIARSRASMFVRVMIGCPVDSSAKRCSG*RPRRKGM 1343041
Query: 82 KTSSMHAACASADVVTTITCSAFTVMMPRRCTSSRYAGFSTISPRQTSRPALRMRULAMV 141
KTSSMHAACASADVVTTITCSAFTVMMPRRCTSSRY+GFST SPRQTSRPALRMR LA+V
Sbjct: 1343042 KTSSMHAACASADVVTTITCSAFTVMMPRRCTSSRYSGFSTTSPRQTSRPALRMRWLAIV 1343221
Query: 142 FQTSPRSALIQRRRHTYGVRTTVSC 166
FQTSPRSALIQRRRHT GVRTTV+C
Sbjct: 1343222 FQTSPRSALIQRRRHT*GVRTTVAC 1343296
>ref|XM_812558.1| Trypanosoma cruzi strain CL Brener hypothetical protein partial mRNA
Length = 5268
Score = 96.7 bits (239), Expect = 2e-18, Method: Composition-based stats.
Identities = 82/164 (50%), Positives = 100/164 (60%)
Frame = -2
Query: 1 LSSMMANSNSTGRPSRRRKSIGETXXXXXXXXXXXXXXXXXXCGACIARSRASMLRRVMI 60
LSS + S GR +RR + G+ CGAC +R RA++ RV+I
Sbjct: 2339 LSSRIVKVISIGRIIKRRNNNGDDSLRMSSNKRQESLMPSSSCGACASRRRANIFDRVII 2160
Query: 61 GCPVDSSAKRCSGXRPRRNGMKTSSMHAACASADVVTTITCSAFTVMMPRRCTSSRYAGF 120
GC V S AK G PRRNGMKTSS + ASA +VT++TCSAFTV+ RR S+RY+G
Sbjct: 2159 GCCVVSGAKSSEG*TPRRNGMKTSSRLHSAASASLVTSMTCSAFTVVSMRRWASARYSGR 1980
Query: 121 STISPRQTSRPALRMRULAMVFQTSPRSALIQRRRHTYGVRTTV 164
ST SP +T RP R R A++F T RSAL QRRRHTYGVR TV
Sbjct: 1979 STTSPGRTRRPP*RKRRDAIIFHTEQRSALNQRRRHTYGVRATV 1848
>ref|XM_808731.1| Trypanosoma cruzi strain CL Brener hypothetical protein partial mRNA
Length = 5268
Score = 96.3 bits (238), Expect = 3e-18, Method: Composition-based stats.
Identities = 78/164 (47%), Positives = 96/164 (58%)
Frame = -2
Query: 1 LSSMMANSNSTGRPSRRRKSIGETXXXXXXXXXXXXXXXXXXCGACIARSRASMLRRVMI 60
LSS + S GR +RR + G+ CGAC +R R ++ RV+I
Sbjct: 2339 LSSRIVKVISIGRIIKRRNNNGDDSLRMSSNKRQESLMPSSSCGACASRRRVNIFDRVII 2160
Query: 61 GCPVDSSAKRCSGXRPRRNGMKTSSMHAACASADVVTTITCSAFTVMMPRRCTSSRYAGF 120
GC V S AK G PRRNGMKTSS + AS + T++TCSAFTV+ RR S+RY+G
Sbjct: 2159 GCCVFSGAKSSEG*TPRRNGMKTSSRLHSAASDSLFTSMTCSAFTVVSMRRWASARYSGR 1980
Query: 121 STISPRQTSRPALRMRULAMVFQTSPRSALIQRRRHTYGVRTTV 164
ST SP +T RP R R A++F T R AL QRRRHTYGVR TV
Sbjct: 1979 STTSPGRTRRPP*RRRRDAIIFHTEQRRALNQRRRHTYGVRATV 1848
>ref|XM_817507.1| Trypanosoma brucei TREU927 hypothetical protein (Tb10.70.3940)
partial mRNA
Length = 5409
Score = 59.7 bits (143), Expect = 3e-07, Method: Composition-based stats.
Identities = 70/166 (42%), Positives = 82/166 (49%), Gaps = 2/166 (1%)
Frame = -2
Query: 1 LSSMMANSNSTGRPSRRRKSIGETXXXXXXXXXXXXXXXXXXCGACIARSRASMLRRVMI 60
LSS N + G RRRK G GAC +R ASML V+I
Sbjct: 2333 LSSSTVNDTAMGLIIRRRKRRGAQSQRMSIN*RQASFIPRSS*GACNSRRIASMLVFVII 2154
Query: 61 GCPVDSSAKRCSGXRPRRNGMKTSSMHAACASADVVTTITCSAFTVMMPRRCTSSRYAGF 120
GC V S A G P R G+ SS + AS+ TTITCSAFTV + R TS+RY+G
Sbjct: 2153 GCFVSSGANSSGG*VPLRKGIHISSTLQSAASSSSRTTITCSAFTVGIMR*WTSARYSGR 1974
Query: 121 STISPRQTSR--PALRMRULAMVFQTSPRSALIQRRRHTYGVRTTV 164
TISP T R P+ R A+ FQT R A QR R T G+ TV
Sbjct: 1973 KTISPGMTRRDAPSSDNRRDAITFQTELRRAFNQRLRQT*GILATV 1836
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.328 0.129 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 449489911
Number of extensions: 6669172
Number of successful extensions: 51555
Number of sequences better than 10: 17
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 51458
Number of HSP's successfully gapped: 18
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 15 (7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.0 bits)
S2: 78 (34.7 bits)
Query= gi|154331742|ref|NC_009296.1|:subseq(281603,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 3
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
ref|XM_001561613.1| Leishmania braziliensis MHOM/BR/75/M2904 hyp... 75 9e-12
emb|AM494940.1| Leishmania braziliensis chromosome 3 75 9e-12
>ref|XM_001561613.1| Leishmania braziliensis MHOM/BR/75/M2904 hypothetical protein,
conserved (LbrM03_V2.0730) partial mRNA
Length = 8613
Score = 74.7 bits (182), Expect = 9e-12, Method: Composition-based stats.
Identities = 77/160 (48%), Positives = 77/160 (48%)
Frame = -1
Query: 7 CCAPQRWHUGPSKRRRUWCGLWXWQNRCRWRRSGSALRGGRCSGALXALPSXXXXXXXXX 66
CCAPQRWH GPSKRRR WCGLW WQNRCRWRRSGSALRGGRCSGAL ALPS
Sbjct: 513 CCAPQRWH*GPSKRRR*WCGLW*WQNRCRWRRSGSALRGGRCSGAL*ALPSRWCQRRGRR 334
Query: 67 XXXXXXXXXVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQRQREWSVLLLVT 126
V QRQREWSVLLLVT
Sbjct: 333 GGCRTHCGRVARAAAPCSGGGGCGEVMCGRAC*GEGPPAPACHG*GGQRQREWSVLLLVT 154
Query: 127 UCXXXXXXXXXXXISGXXXXXXXXXXXPUCECWHVKQNRG 166
C ISG P CECWHVKQNRG
Sbjct: 153 *CRWWRL*KLRLRISGRNQRWWRRRQRP*CECWHVKQNRG 34
>emb|AM494940.1| Leishmania braziliensis chromosome 3
Length = 388728
Score = 74.7 bits (182), Expect = 9e-12, Method: Composition-based stats.
Identities = 77/160 (48%), Positives = 77/160 (48%)
Frame = +3
Query: 7 CCAPQRWHUGPSKRRRUWCGLWXWQNRCRWRRSGSALRGGRCSGALXALPSXXXXXXXXX 66
CCAPQRWH GPSKRRR WCGLW WQNRCRWRRSGSALRGGRCSGAL ALPS
Sbjct: 281622 CCAPQRWH*GPSKRRR*WCGLW*WQNRCRWRRSGSALRGGRCSGAL*ALPSRWCQRRGRR 281801
Query: 67 XXXXXXXXXVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQRQREWSVLLLVT 126
V QRQREWSVLLLVT
Sbjct: 281802 GGCRTHCGRVARAAAPCSGGGGCGEVMCGRAC*GEGPPAPACHG*GGQRQREWSVLLLVT 281981
Query: 127 UCXXXXXXXXXXXISGXXXXXXXXXXXPUCECWHVKQNRG 166
C ISG P CECWHVKQNRG
Sbjct: 281982 *CRWWRL*KLRLRISGRNQRWWRRRQRP*CECWHVKQNRG 282101
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.338 0.143 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 428155245
Number of extensions: 6463337
Number of successful extensions: 96189
Number of sequences better than 10: 16
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 95580
Number of HSP's successfully gapped: 26
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 15 (7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (19.6 bits)
S2: 78 (34.7 bits)
Query= gi|154331742|ref|NC_009296.1|:subseq(281603,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 3
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
emb|AM494940.1| Leishmania braziliensis chromosome 3 106 3e-21
ref|XM_001561613.1| Leishmania braziliensis MHOM/BR/75/M2904 hyp... 101 9e-20
>emb|AM494940.1| Leishmania braziliensis chromosome 3
Length = 388728
Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats.
Identities = 80/166 (48%), Positives = 80/166 (48%)
Frame = +1
Query: 1 PPAEGAAVLLSGGTEALPXXXXXXXXXXXXXXXXXXXXXXXLSAVVAVRERCRHCLLGGA 60
PPAEGAAVLLSGGTEALP LSAVVAVRERCRHCLLGGA
Sbjct: 281605 PPAEGAAVLLSGGTEALPSGGDDGAGCGSGRTDVGGDGVVRLSAVVAVRERCRHCLLGGA 281784
Query: 61 RDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEERGRLHRRVMGEXXXXXXXXX 120
RD EERGRLHRRVMGE
Sbjct: 281785 RDVEGEGAAERTAAELRGLRLRAVAAVVVVR*CADALAEERGRLHRRVMGEAGRGRGSGA 281964
Query: 121 XXXWSHDADGGGFRSCXXXXXXXXXXXXXXXRGLDASAGTSSRTEV 166
WSHDADGGGFRSC RGLDASAGTSSRTEV
Sbjct: 281965 SCCWSHDADGGGFRSCGSASAEETSGGGDGDRGLDASAGTSSRTEV 282102
>ref|XM_001561613.1| Leishmania braziliensis MHOM/BR/75/M2904 hypothetical protein,
conserved (LbrM03_V2.0730) partial mRNA
Length = 8613
Score = 101 bits (251), Expect = 9e-20, Method: Composition-based stats.
Identities = 80/166 (48%), Positives = 80/166 (48%)
Frame = -2
Query: 1 PPAEGAAVLLSGGTEALPXXXXXXXXXXXXXXXXXXXXXXXLSAVVAVRERCRHCLLGGA 60
PPAEGAAVLLSGGTEALP LSAVVAVRERCRHCLLGGA
Sbjct: 530 PPAEGAAVLLSGGTEALPSGGDDGAGCGSGRTDVGGDGVVRLSAVVAVRERCRHCLLGGA 351
Query: 61 RDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEERGRLHRRVMGEXXXXXXXXX 120
RD EERGRLHRRVMGE
Sbjct: 350 RDVEGEGAAERTAAELRGLRLRAVAAVVVVR*CADALAEERGRLHRRVMGEAGRGRGSGA 171
Query: 121 XXXWSHDADGGGFRSCXXXXXXXXXXXXXXXRGLDASAGTSSRTEV 166
WSHDADGGGFRSC RGLDASAGTSSRTEV
Sbjct: 170 SCCWSHDADGGGFRSCGSASAEETSGGGDGDRGLDASAGTSSRTEV 33
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.318 0.135 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 231834511
Number of extensions: 1115769
Number of successful extensions: 3773
Number of sequences better than 10: 1
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 3772
Number of HSP's successfully gapped: 2
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 16 (7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 78 (34.7 bits)
Query= gi|154331742|ref|NC_009296.1|:subseq(281603,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 3
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
ref|XM_001561613.1| Leishmania braziliensis MHOM/BR/75/M2904 hyp... 259 2e-67
emb|AM494940.1| Leishmania braziliensis chromosome 3 258 4e-67
emb|AM502221.1| Leishmania infantum chromosome 3 94 1e-17
ref|XM_001462775.1| Leishmania infantum hypothetical protein, co... 94 2e-17
gb|AC125735.1| Leishmania major strain Friedlin chromosome 3, co... 85 7e-15
ref|XM_001687324.1| Leishmania major hypothetical protein, conse... 84 1e-14
>ref|XM_001561613.1| Leishmania braziliensis MHOM/BR/75/M2904 hypothetical protein,
conserved (LbrM03_V2.0730) partial mRNA
Length = 8613
Score = 259 bits (661), Expect = 2e-67, Method: Composition-based stats.
Identities = 152/166 (91%), Positives = 152/166 (91%)
Frame = -3
Query: 1 HQQKALLCSSAVALRPFQXXXXXXXXXXXXEQMSVATEWFGSPRWSLFGSVVGTAFXVVP 60
HQQKALLCSSAVALRPFQ EQMSVATEWFGSPRWSLFGSVVGTAF VVP
Sbjct: 529 HQQKALLCSSAVALRPFQAAAMMVRAVVVAEQMSVATEWFGSPRWSLFGSVVGTAF*VVP 350
Query: 61 ETWKERGLQNALRPSCEGCGSVQWRRWLWUGNVRTRLLRRGAACTGVSWVRRAEAEGVER 120
ETWKERGLQNALRPSCEGCGSVQWRRWLW GNVRTRLLRRGAACTGVSWVRRAEAEGVER
Sbjct: 349 ETWKERGLQNALRPSCEGCGSVQWRRWLW*GNVRTRLLRRGAACTGVSWVRRAEAEGVER 170
Query: 121 LVAGHMMPMVEALEAAAPHQRKKPAVVATATEALMRVLARQAEPRS 166
LVAGHMMPMVEALEAAAPHQRKKPAVVATATEALMRVLARQAEPRS
Sbjct: 169 LVAGHMMPMVEALEAAAPHQRKKPAVVATATEALMRVLARQAEPRS 32
>emb|AM494940.1| Leishmania braziliensis chromosome 3
Length = 388728
Score = 258 bits (660), Expect = 4e-67, Method: Composition-based stats.
Identities = 152/166 (91%), Positives = 152/166 (91%)
Frame = +2
Query: 1 HQQKALLCSSAVALRPFQXXXXXXXXXXXXEQMSVATEWFGSPRWSLFGSVVGTAFXVVP 60
HQQKALLCSSAVALRPFQ EQMSVATEWFGSPRWSLFGSVVGTAF VVP
Sbjct: 281606 HQQKALLCSSAVALRPFQAAAMMVRAVVVAEQMSVATEWFGSPRWSLFGSVVGTAF*VVP 281785
Query: 61 ETWKERGLQNALRPSCEGCGSVQWRRWLWUGNVRTRLLRRGAACTGVSWVRRAEAEGVER 120
ETWKERGLQNALRPSCEGCGSVQWRRWLW GNVRTRLLRRGAACTGVSWVRRAEAEGVER
Sbjct: 281786 ETWKERGLQNALRPSCEGCGSVQWRRWLW*GNVRTRLLRRGAACTGVSWVRRAEAEGVER 281965
Query: 121 LVAGHMMPMVEALEAAAPHQRKKPAVVATATEALMRVLARQAEPRS 166
LVAGHMMPMVEALEAAAPHQRKKPAVVATATEALMRVLARQAEPRS
Sbjct: 281966 LVAGHMMPMVEALEAAAPHQRKKPAVVATATEALMRVLARQAEPRS 282103
>emb|AM502221.1| Leishmania infantum chromosome 3
Length = 294508
Score = 94.0 bits (232), Expect = 1e-17, Method: Composition-based stats.
Identities = 79/164 (48%), Positives = 88/164 (53%)
Frame = +2
Query: 2 QQKALLCSSAVALRPFQXXXXXXXXXXXXEQMSVATEWFGSPRWSLFGSVVGTAFXVVPE 61
QQKAL C SA AL FQ Q S ATEW PR SL GS V AF VPE
Sbjct: 188585 QQKALHCPSAAALDLFQVTVAMTRVVVVVVQASAATEWLDLPRLSLSGSAVAGAF*SVPE 188764
Query: 62 TWKERGLQNALRPSCEGCGSVQWRRWLWUGNVRTRLLRRGAACTGVSWVRRAEAEGVERL 121
+ LQ+A RP+ E C QWRR LR GAA GVSWVRRA A GV+RL
Sbjct: 188765 VPRGWLLQDAPRPNREDCDPAQWRR----------SLR*GAAYAGVSWVRRAGAAGVKRL 188914
Query: 122 VAGHMMPMVEALEAAAPHQRKKPAVVATATEALMRVLARQAEPR 165
VA + +V + AAA HQ +P AT T A RVLA Q +PR
Sbjct: 188915 VARRPVLLVSSAAAAASHQLTRPVAGATVTRAAARVLAHQQQPR 189046
>ref|XM_001462775.1| Leishmania infantum hypothetical protein, conserved (LinJ03.0440)
partial mRNA
Length = 8715
Score = 93.6 bits (231), Expect = 2e-17, Method: Composition-based stats.
Identities = 79/164 (48%), Positives = 88/164 (53%)
Frame = -3
Query: 2 QQKALLCSSAVALRPFQXXXXXXXXXXXXEQMSVATEWFGSPRWSLFGSVVGTAFXVVPE 61
QQKAL C SA AL FQ Q S ATEW PR SL GS V AF VPE
Sbjct: 511 QQKALHCPSAAALDLFQVTVAMTRVVVVVVQASAATEWLDLPRLSLSGSAVAGAF*SVPE 332
Query: 62 TWKERGLQNALRPSCEGCGSVQWRRWLWUGNVRTRLLRRGAACTGVSWVRRAEAEGVERL 121
+ LQ+A RP+ E C QWRR LR GAA GVSWVRRA A GV+RL
Sbjct: 331 VPRGWLLQDAPRPNREDCDPAQWRR----------SLR*GAAYAGVSWVRRAGAAGVKRL 182
Query: 122 VAGHMMPMVEALEAAAPHQRKKPAVVATATEALMRVLARQAEPR 165
VA + +V + AAA HQ +P AT T A RVLA Q +PR
Sbjct: 181 VARRPVLLVSSAAAAASHQLTRPVAGATVTRAAARVLAHQQQPR 50
>gb|AC125735.1| Leishmania major strain Friedlin chromosome 3, complete sequence
Length = 384518
Score = 85.1 bits (209), Expect = 7e-15, Method: Composition-based stats.
Identities = 77/166 (46%), Positives = 89/166 (53%), Gaps = 2/166 (1%)
Frame = +2
Query: 2 QQKALLCSSAVALRPFQXXXXXXXXXXXXEQMSV--ATEWFGSPRWSLFGSVVGTAFXVV 59
QQKAL C SA AL FQ + ATEWF PR SL GS V A V
Sbjct: 327548 QQKALSCPSAAALNLFQATVAMTRVVVVLAVVQTLVATEWFDLPRLSLSGSAVAGAL*SV 327727
Query: 60 PETWKERGLQNALRPSCEGCGSVQWRRWLWUGNVRTRLLRRGAACTGVSWVRRAEAEGVE 119
PE + LQ+A RP+ E C QWR+ LR GAAC GVS VRRA A GV+
Sbjct: 327728 PEVPRGGLLQDAPRPNREDCDPAQWRQ----------SLR*GAACAGVSRVRRAGAAGVK 327877
Query: 120 RLVAGHMMPMVEALEAAAPHQRKKPAVVATATEALMRVLARQAEPR 165
RLVA + +V + AAA HQ +PAVV T T A +RVLA Q + R
Sbjct: 327878 RLVARRPVLLVSLVAAAASHQLARPAVVVTVTRATVRVLAHQQQSR 328015
>ref|XM_001687324.1| Leishmania major hypothetical protein, conserved (LmjF03.0820)
partial mRNA
Length = 8811
Score = 84.0 bits (206), Expect = 1e-14, Method: Composition-based stats.
Identities = 77/166 (46%), Positives = 89/166 (53%), Gaps = 2/166 (1%)
Frame = -3
Query: 2 QQKALLCSSAVALRPFQXXXXXXXXXXXXEQMSV--ATEWFGSPRWSLFGSVVGTAFXVV 59
QQKAL C SA AL FQ + ATEWF PR SL GS V A V
Sbjct: 517 QQKALSCPSAAALNLFQATVAMTRVVVVLAVVQTLVATEWFDLPRLSLSGSAVAGAL*SV 338
Query: 60 PETWKERGLQNALRPSCEGCGSVQWRRWLWUGNVRTRLLRRGAACTGVSWVRRAEAEGVE 119
PE + LQ+A RP+ E C QWR+ LR GAAC GVS VRRA A GV+
Sbjct: 337 PEVPRGGLLQDAPRPNREDCDPAQWRQ----------SLR*GAACAGVSRVRRAGAAGVK 188
Query: 120 RLVAGHMMPMVEALEAAAPHQRKKPAVVATATEALMRVLARQAEPR 165
RLVA + +V + AAA HQ +PAVV T T A +RVLA Q + R
Sbjct: 187 RLVARRPVLLVSLVAAAASHQLARPAVVVTVTRATVRVLAHQQQSR 50
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.325 0.132 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 622102937
Number of extensions: 12030320
Number of successful extensions: 97222
Number of sequences better than 10: 11
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 97084
Number of HSP's successfully gapped: 11
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 15 (7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.0 bits)
S2: 78 (34.7 bits)
Query= gi|154331742|ref|NC_009296.1|:subseq(289458,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 3
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
ref|XM_001561615.1| Leishmania braziliensis MHOM/BR/75/M2904 hyp... 259 2e-67
emb|AM494940.1| Leishmania braziliensis chromosome 3 259 2e-67
ref|XM_001687326.1| Leishmania major hypothetical protein, conse... 136 2e-30
gb|AC125735.1| Leishmania major strain Friedlin chromosome 3, co... 135 3e-30
emb|AM502221.1| Leishmania infantum chromosome 3 97 2e-18
ref|XM_838775.1| Trypanosoma brucei hypothetical protein, conser... 40 0.18
gb|AC104642.11| Trypanosoma brucei chromosome 3 clone RPCI93-27C... 40 0.18
>ref|XM_001561615.1| Leishmania braziliensis MHOM/BR/75/M2904 hypothetical protein,
conserved (LbrM03_V2.0750) partial mRNA
Length = 2937
Score = 259 bits (663), Expect = 2e-67, Method: Composition-based stats.
Identities = 154/166 (92%), Positives = 154/166 (92%)
Frame = -1
Query: 1 CGSQQRGPQAAQRRLFGTXXXXXXXXXXXXDCTGHVKRQLRGYLRPILLPAHGRVGQWRP 60
CGSQQRGPQAAQRRLFGT DCTGHVKRQLRGYLRPILLPAHGRVGQWRP
Sbjct: 531 CGSQQRGPQAAQRRLFGTAALCRLRHARAHDCTGHVKRQLRGYLRPILLPAHGRVGQWRP 352
Query: 61 GGKAPLSGGVLIDARARTSAAVSFTACAGTLATMRLATLHHCPCGGGSRLALFLLYHAAL 120
GGKAPLSGGVLIDARARTSAAVSFTACAGTLATMRLATLHHCPCGGGSRLALFLLYHAAL
Sbjct: 351 GGKAPLSGGVLIDARARTSAAVSFTACAGTLATMRLATLHHCPCGGGSRLALFLLYHAAL 172
Query: 121 VEGVAVLQPVLGEALLRAKEAAVRHCLCLTQRALEGCFGVRAASLA 166
VEGVAVLQPVLGEALLRAKEAAVRHCLCLTQRALEGCFGVRAASLA
Sbjct: 171 VEGVAVLQPVLGEALLRAKEAAVRHCLCLTQRALEGCFGVRAASLA 34
>emb|AM494940.1| Leishmania braziliensis chromosome 3
Length = 388728
Score = 259 bits (661), Expect = 2e-67, Method: Composition-based stats.
Identities = 154/166 (92%), Positives = 154/166 (92%)
Frame = +1
Query: 1 CGSQQRGPQAAQRRLFGTXXXXXXXXXXXXDCTGHVKRQLRGYLRPILLPAHGRVGQWRP 60
CGSQQRGPQAAQRRLFGT DCTGHVKRQLRGYLRPILLPAHGRVGQWRP
Sbjct: 289459 CGSQQRGPQAAQRRLFGTAALCRLRHARAHDCTGHVKRQLRGYLRPILLPAHGRVGQWRP 289638
Query: 61 GGKAPLSGGVLIDARARTSAAVSFTACAGTLATMRLATLHHCPCGGGSRLALFLLYHAAL 120
GGKAPLSGGVLIDARARTSAAVSFTACAGTLATMRLATLHHCPCGGGSRLALFLLYHAAL
Sbjct: 289639 GGKAPLSGGVLIDARARTSAAVSFTACAGTLATMRLATLHHCPCGGGSRLALFLLYHAAL 289818
Query: 121 VEGVAVLQPVLGEALLRAKEAAVRHCLCLTQRALEGCFGVRAASLA 166
VEGVAVLQPVLGEALLRAKEAAVRHCLCLTQRALEGCFGVRAASLA
Sbjct: 289819 VEGVAVLQPVLGEALLRAKEAAVRHCLCLTQRALEGCFGVRAASLA 289956
>ref|XM_001687326.1| Leishmania major hypothetical protein, conserved (LmjF03.0840)
partial mRNA
Length = 2925
Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats.
Identities = 101/169 (59%), Positives = 111/169 (65%), Gaps = 4/169 (2%)
Frame = -1
Query: 2 GSQQRGPQAAQRRLFGTXXXXXXXXXXXXDCTGHVKRQLRGYLRPILLPAHGRVGQWRPG 61
GS R PQAA +RLFG DC GH++RQLRG LRP++L AH RVGQWRPG
Sbjct: 537 GS*HRRPQAALKRLFGAAIRSLRHDRAH-DCAGHIERQLRGDLRPVVLLAHRRVGQWRPG 361
Query: 62 GKAPLSGGVLIDARARTSAAVSFTACAGTLATMRLATLHHCPCGGGSRLA----LFLLYH 117
GK G +LI A T AA S AC GTL LA L PCGGGSR A L +H
Sbjct: 360 GKRSGRGSLLIGACVCTRAAGSLIACTGTLTATCLAALLCGPCGGGSRSASRRTLHFPHH 181
Query: 118 AALVEGVAVLQPVLGEALLRAKEAAVRHCLCLTQRALEGCFGVRAASLA 166
AALVEGVAVLQPVLGEALL A+EAA+ CL LTQRALEG G+RA SLA
Sbjct: 180 AALVEGVAVLQPVLGEALLSAEEAAIHCCLRLTQRALEGRCGLRATSLA 34
>gb|AC125735.1| Leishmania major strain Friedlin chromosome 3, complete sequence
Length = 384518
Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats.
Identities = 101/169 (59%), Positives = 111/169 (65%), Gaps = 4/169 (2%)
Frame = +1
Query: 2 GSQQRGPQAAQRRLFGTXXXXXXXXXXXXDCTGHVKRQLRGYLRPILLPAHGRVGQWRPG 61
GS R PQAA +RLFG DC GH++RQLRG LRP++L AH RVGQWRPG
Sbjct: 334276 GS*HRRPQAALKRLFGAAIRSLRHDRAH-DCAGHIERQLRGDLRPVVLLAHRRVGQWRPG 334452
Query: 62 GKAPLSGGVLIDARARTSAAVSFTACAGTLATMRLATLHHCPCGGGSRLA----LFLLYH 117
GK G +LI A T AA S AC GTL LA L PCGGGSR A L +H
Sbjct: 334453 GKRSGRGSLLIGACVCTRAAGSLIACTGTLTATCLAALLCGPCGGGSRSASRRTLHFPHH 334632
Query: 118 AALVEGVAVLQPVLGEALLRAKEAAVRHCLCLTQRALEGCFGVRAASLA 166
AALVEGVAVLQPVLGEALL A+EAA+ CL LTQRALEG G+RA SLA
Sbjct: 334633 AALVEGVAVLQPVLGEALLSAEEAAIHCCLRLTQRALEGRCGLRATSLA 334779
>emb|AM502221.1| Leishmania infantum chromosome 3
Length = 294508
Score = 97.1 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 70/128 (54%), Positives = 77/128 (60%), Gaps = 4/128 (3%)
Frame = -1
Query: 2 GSQQRGPQAAQRRLFGTXXXXXXXXXXXXDCTGHVKRQLRGYLRPILLPAHGRVGQWRPG 61
GSQ P AA +RLFG DC GH++RQLRG L P++L AH RVGQWRPG
Sbjct: 239638 GSQHGRPHAALKRLFGAALRSLRHDRAH-DCAGHIERQLRGDLCPVVLLAHRRVGQWRPG 239462
Query: 62 GKAPLSGGVLIDARARTSAAVSFTACAGTLATMRLATLHHCPCGGG----SRLALFLLYH 117
GK SGG+LI A T AA S CAGTL RLA L PC GG SR L L +H
Sbjct: 239461 GKRSTSGGLLIGACVFTRAAGSLITCAGTLTATRLAALLRGPCRGGSRSVSRQTLRLPHH 239282
Query: 118 AALVEGVA 125
AALVEGVA
Sbjct: 239281 AALVEGVA 239258
Score = 56.2 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 33/41 (80%), Positives = 37/41 (90%)
Frame = +1
Query: 126 VLQPVLGEALLRAKEAAVRHCLCLTQRALEGCFGVRAASLA 166
VL+PVLGEALL A+EAA+R CLCLTQRALEG G+RAASLA
Sbjct: 189208 VLKPVLGEALLSAEEAAIRCCLCLTQRALEGRCGLRAASLA 189330
>ref|XM_838775.1| Trypanosoma brucei hypothetical protein, conserved (Tb927.3.2750)
partial mRNA
Length = 2616
Score = 40.4 bits (93), Expect = 0.18, Method: Composition-based stats.
Identities = 24/45 (53%), Positives = 30/45 (66%)
Frame = -1
Query: 112 LFLLYHAALVEGVAVLQPVLGEALLRAKEAAVRHCLCLTQRALEG 156
LF Y+ L+EG AVL+PVL EA L K+A + + LT RALEG
Sbjct: 174 LFGPYYPTLMEGTAVLKPVLCEAFLTTKKAPIGNKFRLT*RALEG 40
>gb|AC104642.11| Trypanosoma brucei chromosome 3 clone RPCI93-27C5, complete sequence
Length = 126762
Score = 40.4 bits (93), Expect = 0.18, Method: Composition-based stats.
Identities = 24/45 (53%), Positives = 30/45 (66%)
Frame = +3
Query: 112 LFLLYHAALVEGVAVLQPVLGEALLRAKEAAVRHCLCLTQRALEG 156
LF Y+ L+EG AVL+PVL EA L K+A + + LT RALEG
Sbjct: 14694 LFGPYYPTLMEGTAVLKPVLCEAFLTTKKAPIGNKFRLT*RALEG 14828
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.327 0.139 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 573789096
Number of extensions: 8479263
Number of successful extensions: 66428
Number of sequences better than 10: 3
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 66407
Number of HSP's successfully gapped: 3
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 15 (7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.0 bits)
S2: 78 (34.7 bits)
Query= gi|154331742|ref|NC_009296.1|:subseq(289458,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 3
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
emb|AM494940.1| Leishmania braziliensis chromosome 3 174 6e-42
ref|XM_001561615.1| Leishmania braziliensis MHOM/BR/75/M2904 hyp... 172 4e-41
gb|AC125735.1| Leishmania major strain Friedlin chromosome 3, co... 108 5e-22
ref|XM_001687326.1| Leishmania major hypothetical protein, conse... 108 7e-22
emb|AM502221.1| Leishmania infantum chromosome 3 52 6e-05
ref|XM_838775.1| Trypanosoma brucei hypothetical protein, conser... 51 1e-04
gb|AC104642.11| Trypanosoma brucei chromosome 3 clone RPCI93-27C... 51 1e-04
ref|XM_811809.1| Trypanosoma cruzi strain CL Brener hypothetical... 42 0.049
ref|XM_817042.1| Trypanosoma cruzi strain CL Brener hypothetical... 42 0.054
>emb|AM494940.1| Leishmania braziliensis chromosome 3
Length = 388728
Score = 174 bits (442), Expect = 6e-42, Method: Composition-based stats.
Identities = 115/166 (69%), Positives = 115/166 (69%)
Frame = +2
Query: 1 AAASSADHRQHSGGCSAPPPFXXXXXXXXXXXXXXXXXXXXVTCAQFFSLHTAALGSGGQ 60
AAASSADHRQHSGGCSAPPPF VTCAQFFSLHTAALGSGGQ
Sbjct: 289460 AAASSADHRQHSGGCSAPPPFAASVTRGRTTARGTSSGNSGVTCAQFFSLHTAALGSGGQ 289639
Query: 61 GAKRRSAEASLSTXXXXXXXXXXXXXXRARLPPCVLXXXXXXXXXXXXXXXXFSCTTPLL 120
GAKRRSAEASLST RARLPPCVL FSCTTPLL
Sbjct: 289640 GAKRRSAEASLSTLVPAPVPLSASPPVRARLPPCVLRPFTTAPAGAAAGWRFFSCTTPLL 289819
Query: 121 WRVLRCSSQCLAKHSCEQKKPRSVTASAUHSGHWRVVLVSVLHPWQ 166
WRVLRCSSQCLAKHSCEQKKPRSVTASA HSGHWRVVLVSVLHPWQ
Sbjct: 289820 WRVLRCSSQCLAKHSCEQKKPRSVTASA*HSGHWRVVLVSVLHPWQ 289957
>ref|XM_001561615.1| Leishmania braziliensis MHOM/BR/75/M2904 hypothetical protein,
conserved (LbrM03_V2.0750) partial mRNA
Length = 2937
Score = 172 bits (435), Expect = 4e-41, Method: Composition-based stats.
Identities = 115/166 (69%), Positives = 115/166 (69%)
Frame = -2
Query: 1 AAASSADHRQHSGGCSAPPPFXXXXXXXXXXXXXXXXXXXXVTCAQFFSLHTAALGSGGQ 60
AAASSADHRQHSGGCSAPPPF VTCAQFFSLHTAALGSGGQ
Sbjct: 530 AAASSADHRQHSGGCSAPPPFAASVTRGRTTARGTSSGNSGVTCAQFFSLHTAALGSGGQ 351
Query: 61 GAKRRSAEASLSTXXXXXXXXXXXXXXRARLPPCVLXXXXXXXXXXXXXXXXFSCTTPLL 120
GAKRRSAEASLST RARLPPCVL FSCTTPLL
Sbjct: 350 GAKRRSAEASLSTLVPAPVPLSASPPVRARLPPCVLRPFTTAPAGAAAGWRFFSCTTPLL 171
Query: 121 WRVLRCSSQCLAKHSCEQKKPRSVTASAUHSGHWRVVLVSVLHPWQ 166
WRVLRCSSQCLAKHSCEQKKPRSVTASA HSGHWRVVLVSVLHPWQ
Sbjct: 170 WRVLRCSSQCLAKHSCEQKKPRSVTASA*HSGHWRVVLVSVLHPWQ 33
>gb|AC125735.1| Leishmania major strain Friedlin chromosome 3, complete sequence
Length = 384518
Score = 108 bits (270), Expect = 5e-22, Method: Composition-based stats.
Identities = 86/170 (50%), Positives = 89/170 (52%), Gaps = 4/170 (2%)
Frame = +2
Query: 1 AAASSADHRQHSGGCSAPPPFXXXXXXXXXXXXXXXXXXXXVTCAQFFSLHTAALGSGGQ 60
AAAS ADHRQH GCSA P F VTCAQ F LHTAALGSGGQ
Sbjct: 334274 AAASIADHRQH*SGCSALP-FAASVMTGRTTARGTSSGSSGVTCAQLFFLHTAALGSGGQ 334450
Query: 61 GAKRRSAEASLSTXXXXXXXXXXXXXXRARLPPCVLXXXXXXXXXXXXXXXX----FSCT 116
GA + ASLS R RLPP L S T
Sbjct: 334451 GASVPAGAASLSALVSVPVPLAASSPARERLPPRALRPFSVAPAGAAAAAPAGGRFISRT 334630
Query: 117 TPLLWRVLRCSSQCLAKHSCEQKKPRSVTASAUHSGHWRVVLVSVLHPWQ 166
TPLLWRVLRC SQ LAKHS QKKPRS ASA HSGHW+ V+V VLHPWQ
Sbjct: 334631 TPLLWRVLRCFSQFLAKHS*VQKKPRSTAASA*HSGHWKAVVVCVLHPWQ 334780
>ref|XM_001687326.1| Leishmania major hypothetical protein, conserved (LmjF03.0840)
partial mRNA
Length = 2925
Score = 108 bits (269), Expect = 7e-22, Method: Composition-based stats.
Identities = 86/170 (50%), Positives = 89/170 (52%), Gaps = 4/170 (2%)
Frame = -2
Query: 1 AAASSADHRQHSGGCSAPPPFXXXXXXXXXXXXXXXXXXXXVTCAQFFSLHTAALGSGGQ 60
AAAS ADHRQH GCSA P F VTCAQ F LHTAALGSGGQ
Sbjct: 539 AAASIADHRQH*SGCSALP-FAASVMTGRTTARGTSSGSSGVTCAQLFFLHTAALGSGGQ 363
Query: 61 GAKRRSAEASLSTXXXXXXXXXXXXXXRARLPPCVLXXXXXXXXXXXXXXXX----FSCT 116
GA + ASLS R RLPP L S T
Sbjct: 362 GASVPAGAASLSALVSVPVPLAASSPARERLPPRALRPFSVAPAGAAAAAPAGGRFISRT 183
Query: 117 TPLLWRVLRCSSQCLAKHSCEQKKPRSVTASAUHSGHWRVVLVSVLHPWQ 166
TPLLWRVLRC SQ LAKHS QKKPRS ASA HSGHW+ V+V VLHPWQ
Sbjct: 182 TPLLWRVLRCFSQFLAKHS*VQKKPRSTAASA*HSGHWKAVVVCVLHPWQ 33
>emb|AM502221.1| Leishmania infantum chromosome 3
Length = 294508
Score = 52.0 bits (123), Expect = 6e-05, Method: Composition-based stats.
Identities = 51/129 (39%), Positives = 51/129 (39%), Gaps = 4/129 (3%)
Frame = -2
Query: 1 AAASSADHRQHSGGCSAPPPFXXXXXXXXXXXXXXXXXXXXVTCAQFFSLHTAALGSGGQ 60
AAAS A H Q GCSA P F VTCAQ F LHTAALGSGGQ
Sbjct: 239640 AAASMAGHMQR*SGCSALP-FAASVTTGRTTARGTSSGSSGVTCAQLFFLHTAALGSGGQ 239464
Query: 61 GAKRRSAEASLSTXXXXXXXXXXXXXXRARLPPCVLXXXXXXXXXXXXXXXXFS----CT 116
GA A A LS R RLPP T
Sbjct: 239463 GASVPPAAAFLSAHVSLPVPLAASSPARERLPPRAWRPFSVVPAGAAAAASAGRRFVFRT 239284
Query: 117 TPLLWRVLR 125
TPLLWRVLR
Sbjct: 239283 TPLLWRVLR 239257
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 29/41 (70%), Positives = 32/41 (78%)
Frame = +2
Query: 126 CSSQCLAKHSCEQKKPRSVTASAUHSGHWRVVLVSVLHPWQ 166
C SQ LAKHS QKKP+S ASA HSGHW+ V+V VLHPWQ
Sbjct: 189209 CLSQFLAKHS*VQKKPQSAVASA*HSGHWKAVVVCVLHPWQ 189331
>ref|XM_838775.1| Trypanosoma brucei hypothetical protein, conserved (Tb927.3.2750)
partial mRNA
Length = 2616
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/43 (65%), Positives = 33/43 (76%)
Frame = -2
Query: 113 FSCTTPLLWRVLRCSSQCLAKHSCEQKKPRSVTASAUHSGHWR 155
+ TTPLLW+V RC SQ AKHS QKKPRSV +SA H+GHW+
Sbjct: 170 LALTTPLLWKVRRC*SQFFAKHS*PQKKPRSVISSA*HNGHWK 42
>gb|AC104642.11| Trypanosoma brucei chromosome 3 clone RPCI93-27C5, complete sequence
Length = 126762
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/43 (65%), Positives = 33/43 (76%)
Frame = +1
Query: 113 FSCTTPLLWRVLRCSSQCLAKHSCEQKKPRSVTASAUHSGHWR 155
+ TTPLLW+V RC SQ AKHS QKKPRSV +SA H+GHW+
Sbjct: 14698 LALTTPLLWKVRRC*SQFFAKHS*PQKKPRSVISSA*HNGHWK 14826
>ref|XM_811809.1| Trypanosoma cruzi strain CL Brener hypothetical protein partial
mRNA
Length = 2559
Score = 42.4 bits (98), Expect = 0.049, Method: Composition-based stats.
Identities = 25/38 (65%), Positives = 25/38 (65%)
Frame = -2
Query: 116 TTPLLWRVLRCSSQCLAKHSCEQKKPRSVTASAUHSGH 153
TTP LW VLR Q AKHS QKKPRSV SA SGH
Sbjct: 170 TTPFLWNVLR*FRQFFAKHS*PQKKPRSVAISAWQSGH 57
>ref|XM_817042.1| Trypanosoma cruzi strain CL Brener hypothetical protein partial
mRNA
Length = 2559
Score = 42.4 bits (98), Expect = 0.054, Method: Composition-based stats.
Identities = 25/38 (65%), Positives = 25/38 (65%)
Frame = -2
Query: 116 TTPLLWRVLRCSSQCLAKHSCEQKKPRSVTASAUHSGH 153
TTP LW VLR Q AKHS QKKPRSV SA SGH
Sbjct: 170 TTPFLWNVLR*FRQFFAKHS*PQKKPRSVAISAWQSGH 57
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.321 0.128 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 599337758
Number of extensions: 8879182
Number of successful extensions: 43684
Number of sequences better than 10: 3
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 43672
Number of HSP's successfully gapped: 4
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 16 (7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 78 (34.7 bits)
Query= gi|154331742|ref|NC_009296.1|:subseq(289458,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 3
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
ref|XM_001561615.1| Leishmania braziliensis MHOM/BR/75/M2904 hyp... 189 3e-46
emb|AM494940.1| Leishmania braziliensis chromosome 3 188 4e-46
ref|XM_001687326.1| Leishmania major hypothetical protein, conse... 97 2e-18
gb|AC125735.1| Leishmania major strain Friedlin chromosome 3, co... 97 2e-18
emb|AM502221.1| Leishmania infantum chromosome 3 70 3e-10
>ref|XM_001561615.1| Leishmania braziliensis MHOM/BR/75/M2904 hypothetical protein,
conserved (LbrM03_V2.0750) partial mRNA
Length = 2937
Score = 189 bits (479), Expect = 3e-46, Method: Composition-based stats.
Identities = 150/166 (90%), Positives = 150/166 (90%)
Frame = -3
Query: 1 RQPAARTTGSTAAAVRHRRPLPPPSREGARLHGARQAATPGLPAPNSSPCTRPXXXXXXX 60
RQPAARTTGSTAAAVRHRRPLPPPSREGARLHGARQAATPGLPAPNSSPCTRP
Sbjct: 529 RQPAARTTGSTAAAVRHRRPLPPPSREGARLHGARQAATPGLPAPNSSPCTRPRWAVAAR 350
Query: 61 XXXXXXXXXPYRRSCPHQCRCQLHRLCGHACHHASCDPSPLPLRGRQPAGAFSPVPRRSC 120
PYRRSCPHQCRCQLHRLCGHACHHASCDPSPLPLRGRQPAGAFSPVPRRSC
Sbjct: 349 GQSAAQRRRPYRRSCPHQCRCQLHRLCGHACHHASCDPSPLPLRGRQPAGAFSPVPRRSC 170
Query: 121 GGCCGAPASAWRSTPASKRSRGPSLPLLDTAGIGGLFWCPCCIPGR 166
GGCCGAPASAWRSTPASKRSRGPSLPLLDTAGIGGLFWCPCCIPGR
Sbjct: 169 GGCCGAPASAWRSTPASKRSRGPSLPLLDTAGIGGLFWCPCCIPGR 32
>emb|AM494940.1| Leishmania braziliensis chromosome 3
Length = 388728
Score = 188 bits (478), Expect = 4e-46, Method: Composition-based stats.
Identities = 150/166 (90%), Positives = 150/166 (90%)
Frame = +3
Query: 1 RQPAARTTGSTAAAVRHRRPLPPPSREGARLHGARQAATPGLPAPNSSPCTRPXXXXXXX 60
RQPAARTTGSTAAAVRHRRPLPPPSREGARLHGARQAATPGLPAPNSSPCTRP
Sbjct: 289461 RQPAARTTGSTAAAVRHRRPLPPPSREGARLHGARQAATPGLPAPNSSPCTRPRWAVAAR 289640
Query: 61 XXXXXXXXXPYRRSCPHQCRCQLHRLCGHACHHASCDPSPLPLRGRQPAGAFSPVPRRSC 120
PYRRSCPHQCRCQLHRLCGHACHHASCDPSPLPLRGRQPAGAFSPVPRRSC
Sbjct: 289641 GQSAAQRRRPYRRSCPHQCRCQLHRLCGHACHHASCDPSPLPLRGRQPAGAFSPVPRRSC 289820
Query: 121 GGCCGAPASAWRSTPASKRSRGPSLPLLDTAGIGGLFWCPCCIPGR 166
GGCCGAPASAWRSTPASKRSRGPSLPLLDTAGIGGLFWCPCCIPGR
Sbjct: 289821 GGCCGAPASAWRSTPASKRSRGPSLPLLDTAGIGGLFWCPCCIPGR 289958
>ref|XM_001687326.1| Leishmania major hypothetical protein, conserved (LmjF03.0840)
partial mRNA
Length = 2925
Score = 97.1 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 96/170 (56%), Positives = 105/170 (61%), Gaps = 4/170 (2%)
Frame = -3
Query: 1 RQPAARTTGSTAAAVRHRRPLPPPSREGARLHGARQAATPGLPAPNSSPCTRPXXXXXXX 60
RQ A++TTGST AAVR R PPS +GARL GA +AA PG PAP+ S CT P
Sbjct: 538 RQLASQTTGSTEAAVR-RCHSQPPS*QGARLRGAHRAAAPG*PAPSCSSCTPPRWAVAAR 362
Query: 61 XXXXXXXXXPYRRSCPHQCRCQLHRLCGHACHHASCDPSPLPLRGRQP----AGAFSPVP 116
PYRR C + CR Q HRL G+A H C PS PLRGRQP A A P P
Sbjct: 361 GQAFRQGQPPYRRLCLYPCRWQPHRLHGNAYRHVPCGPSLWPLRGRQPQRQPADASFPAP 182
Query: 117 RRSCGGCCGAPASAWRSTPASKRSRGPSLPLLDTAGIGGLFWCPCCIPGR 166
RRSCGGCCGA AS+WRSTP +RSR P LP LDTAG G W C IPGR
Sbjct: 181 RRSCGGCCGASASSWRSTPECRRSRDPLLPPLDTAGTGRPLWSACYIPGR 32
>gb|AC125735.1| Leishmania major strain Friedlin chromosome 3, complete sequence
Length = 384518
Score = 97.1 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 96/170 (56%), Positives = 105/170 (61%), Gaps = 4/170 (2%)
Frame = +3
Query: 1 RQPAARTTGSTAAAVRHRRPLPPPSREGARLHGARQAATPGLPAPNSSPCTRPXXXXXXX 60
RQ A++TTGST AAVR R PPS +GARL GA +AA PG PAP+ S CT P
Sbjct: 334275 RQLASQTTGSTEAAVR-RCHSQPPS*QGARLRGAHRAAAPG*PAPSCSSCTPPRWAVAAR 334451
Query: 61 XXXXXXXXXPYRRSCPHQCRCQLHRLCGHACHHASCDPSPLPLRGRQP----AGAFSPVP 116
PYRR C + CR Q HRL G+A H C PS PLRGRQP A A P P
Sbjct: 334452 GQAFRQGQPPYRRLCLYPCRWQPHRLHGNAYRHVPCGPSLWPLRGRQPQRQPADASFPAP 334631
Query: 117 RRSCGGCCGAPASAWRSTPASKRSRGPSLPLLDTAGIGGLFWCPCCIPGR 166
RRSCGGCCGA AS+WRSTP +RSR P LP LDTAG G W C IPGR
Sbjct: 334632 RRSCGGCCGASASSWRSTPECRRSRDPLLPPLDTAGTGRPLWSACYIPGR 334781
>emb|AM502221.1| Leishmania infantum chromosome 3
Length = 294508
Score = 69.7 bits (169), Expect = 3e-10, Method: Composition-based stats.
Identities = 67/134 (50%), Positives = 74/134 (55%), Gaps = 4/134 (2%)
Frame = -3
Query: 1 RQPAARTTGSTAAAVRHRRPLPPPSREGARLHGARQAATPGLPAPNSSPCTRPXXXXXXX 60
RQPA + T S AAVR R P PPSR+GARL GA +AA PG P P+ S CT P
Sbjct: 239639 RQPAWQATCSAEAAVR-RCPSQPPSRQGARLRGAHRAAAPG*PVPSCSSCTPPRWAVAAR 239463
Query: 61 XXXXXXXXXPYRRSCPHQCRCQLHRLCGHACHHASCDPSPLPLRG----RQPAGAFSPVP 116
YRR C + CR Q H L G+A HA PSP L+G RQPA A S P
Sbjct: 239462 GQAFHQRRPSYRRMCLYPCRWQPHHLRGNAYRHAPGGPSPWSLQGRQPQRQPADASSSAP 239283
Query: 117 RRSCGGCCGAPASA 130
RRSCGGCCG S
Sbjct: 239282 RRSCGGCCGLSQSG 239241
Score = 44.7 bits (104), Expect = 0.010, Method: Composition-based stats.
Identities = 25/36 (69%), Positives = 26/36 (72%)
Frame = +3
Query: 131 WRSTPASKRSRGPSLPLLDTAGIGGLFWCPCCIPGR 166
WRSTP +RSR P LPLLDTAG G W CCIPGR
Sbjct: 189225 WRSTPECRRSRNPLLPLLDTAGTGRPLWSACCIPGR 189332
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.323 0.137 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 884300790
Number of extensions: 22686587
Number of successful extensions: 308626
Number of sequences better than 10: 377
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 304763
Number of HSP's successfully gapped: 1070
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 16 (7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 78 (34.7 bits)
Query= gi|154331742|ref|NC_009296.1|:subseq(319489,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 3
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
emb|AM494940.1| Leishmania braziliensis chromosome 3 263 2e-68
>emb|AM494940.1| Leishmania braziliensis chromosome 3
Length = 388728
Score = 263 bits (671), Expect = 2e-68, Method: Composition-based stats.
Identities = 135/166 (81%), Positives = 135/166 (81%)
Frame = +2
Query: 1 GLLQVVTRQLGPFHCPLTFTVSAVNCMGAYTRIFLVIXXXXXXXXXXXXXQHGHTWRLID 60
GLLQVVTRQLGPFHCPLTFTVSAVNCMGAYTRIFLVI QHGHTWRLID
Sbjct: 319490 GLLQVVTRQLGPFHCPLTFTVSAVNCMGAYTRIFLVIRLRRDAKRTRRKTQHGHTWRLID 319669
Query: 61 FAGRERDEESVGERGKSHSAUARVLMAREVPQVPTSRAXXXXXXXXXXXXXXXXXRQHVF 120
FAGRERDEESVGERGKSHSA ARVLMAREVPQVPTSRA RQHVF
Sbjct: 319670 FAGRERDEESVGERGKSHSA*ARVLMAREVPQVPTSRAPSFPSNSLSPPSLFLVSRQHVF 319849
Query: 121 AVNGLTPMTHMHTSDIGVVMDVVNAGPIPLTSSSFHARDPTYILQN 166
AVNGLTPMTHMHTSDIGVVMDVVNAGPIPLTSSSFHARDPTYILQN
Sbjct: 319850 AVNGLTPMTHMHTSDIGVVMDVVNAGPIPLTSSSFHARDPTYILQN 319987
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.324 0.136 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 446321089
Number of extensions: 4841854
Number of successful extensions: 28264
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 28254
Number of HSP's successfully gapped: 0
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 15 (7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.0 bits)
S2: 78 (34.7 bits)
Query= gi|154331742|ref|NC_009296.1|:subseq(319489,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 3
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
emb|AM494940.1| Leishmania braziliensis chromosome 3 246 1e-63
>emb|AM494940.1| Leishmania braziliensis chromosome 3
Length = 388728
Score = 246 bits (629), Expect = 1e-63, Method: Composition-based stats.
Identities = 136/166 (81%), Positives = 136/166 (81%)
Frame = +3
Query: 1 ASCKLLRASLDLSIAPSLSLCLRUTAWAPTHASFXSFDLGEMPREHXXXXXXXXXXXXSI 60
ASCKLLRASLDLSIAPSLSLCLR TAWAPTHASF SFDLGEMPREH SI
Sbjct: 319491 ASCKLLRASLDLSIAPSLSLCLR*TAWAPTHASF*SFDLGEMPREHGGRLNTGTRGG*SI 319670
Query: 61 LPDGSETKRAWGRGERVTLREPVCUWREKSHKYPRPERRPSLPTLFRHHPFXXXXXXXXX 120
LPDGSETKRAWGRGERVTLREPVC WREKSHKYPRPERRPSLPTLFRHHPF
Sbjct: 319671 LPDGSETKRAWGRGERVTLREPVC*WREKSHKYPRPERRPSLPTLFRHHPFSS*VVSTSS 319850
Query: 121 XXXDLHPULTCIRVTSGSSWTLXMPGLYHUPPPVFMLATQLTSFKT 166
DLHP LTCIRVTSGSSWTL MPGLYH PPPVFMLATQLTSFKT
Sbjct: 319851 LLTDLHP*LTCIRVTSGSSWTL*MPGLYH*PPPVFMLATQLTSFKT 319988
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.330 0.140 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 657511150
Number of extensions: 9896666
Number of successful extensions: 73412
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 73364
Number of HSP's successfully gapped: 0
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 15 (7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.0 bits)
S2: 78 (34.7 bits)
Query= gi|154331742|ref|NC_009296.1|:subseq(319489,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 3
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
emb|AM494940.1| Leishmania braziliensis chromosome 3 237 8e-61
>emb|AM494940.1| Leishmania braziliensis chromosome 3
Length = 388728
Score = 237 bits (605), Expect = 8e-61, Method: Composition-based stats.
Identities = 140/165 (84%), Positives = 140/165 (84%)
Frame = +1
Query: 1 PLASCYAPAWTFPLPPHFHCVCGELHGRLHTHLFSHSTXERCQENTEEDSTRAHVEVNRF 60
PLASCYAPAWTFPLPPHFHCVCGELHGRLHTHLFSHST ERCQENTEEDSTRAHVEVNRF
Sbjct: 319492 PLASCYAPAWTFPLPPHFHCVCGELHGRLHTHLFSHST*ERCQENTEEDSTRAHVEVNRF 319671
Query: 61 CRTXXXXXXXXXXXKESLCVSPCADGERSPTSTHVQSAVLPFQLSFATIPFPRKSSARLR 120
CRT KESLCVSPCADGERSPTSTHVQSAVLPFQLSFATIPFPRKSSARLR
Sbjct: 319672 CRTGARRRERGGEGKESLCVSPCADGERSPTSTHVQSAVLPFQLSFATIPFPRKSSARLR 319851
Query: 121 CXRTYTHDSHAYEXXXXXXXXXXXXAYTTDLLQFSCSRPNLHPSK 165
C RTYTHDSHAYE AYTTDLLQFSCSRPNLHPSK
Sbjct: 319852 C*RTYTHDSHAYE*HRGRHGRCKCRAYTTDLLQFSCSRPNLHPSK 319986
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.330 0.136 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 634808895
Number of extensions: 10034771
Number of successful extensions: 79304
Number of sequences better than 10: 4
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 79123
Number of HSP's successfully gapped: 4
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 15 (7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.0 bits)
S2: 78 (34.7 bits)
Query= gi|154331742|ref|NC_009296.1|:subseq(32038,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 3
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
ref|XM_001561552.1| Leishmania braziliensis MHOM/BR/75/M2904 hyp... 187 9e-46
emb|AM494940.1| Leishmania braziliensis chromosome 3 187 9e-46
ref|XM_001465275.1| Leishmania infantum JPCM5 hypothetical prote... 100 2e-19
emb|AM502238.1| Leishmania infantum chromosome 20 100 2e-19
ref|XM_001687255.1| Leishmania major hypothetical protein, conse... 94 2e-17
gb|AC125735.1| Leishmania major strain Friedlin chromosome 3, co... 94 2e-17
>ref|XM_001561552.1| Leishmania braziliensis MHOM/BR/75/M2904 hypothetical protein,
conserved (LbrM03_V2.0120) partial mRNA
Length = 2697
Score = 187 bits (475), Expect = 9e-46, Method: Composition-based stats.
Identities = 125/166 (75%), Positives = 125/166 (75%)
Frame = +2
Query: 1 SCVPTANPATADEPCRLPLLLQRHPQSHYHREPQWTRLCWXXXXXXXXXXXXXXXQGLPP 60
SCVPTANPATADEPCRLPLLLQRHPQSHYHREPQWTRLCW QGLPP
Sbjct: 1403 SCVPTANPATADEPCRLPLLLQRHPQSHYHREPQWTRLCWRRRSRH*RRSSSTTRQGLPP 1582
Query: 61 WMCMRRRTCCTASCWNTCKSPRAIASRCSSGCGPSSQHTTQWKEDXWQRSTYCACGAAXX 120
WMCMRRRTCCTASCWNTCKSPRAIASRCSSGCGPSSQHTTQWKED WQRSTYCACGAA
Sbjct: 1583 WMCMRRRTCCTASCWNTCKSPRAIASRCSSGCGPSSQHTTQWKED*WQRSTYCACGAARS 1762
Query: 121 XXXXXXXXXXXXXXXXXXXXXXXHCGVSRRSHLPSLPLQQAATRIP 166
HCGVSRRSHLPSLPLQQAATRIP
Sbjct: 1763 RPLVLVQPRLRTLPPPTGRRPRRHCGVSRRSHLPSLPLQQAATRIP 1900
>emb|AM494940.1| Leishmania braziliensis chromosome 3
Length = 388728
Score = 187 bits (475), Expect = 9e-46, Method: Composition-based stats.
Identities = 125/166 (75%), Positives = 125/166 (75%)
Frame = +2
Query: 1 SCVPTANPATADEPCRLPLLLQRHPQSHYHREPQWTRLCWXXXXXXXXXXXXXXXQGLPP 60
SCVPTANPATADEPCRLPLLLQRHPQSHYHREPQWTRLCW QGLPP
Sbjct: 32039 SCVPTANPATADEPCRLPLLLQRHPQSHYHREPQWTRLCWRRRSRH*RRSSSTTRQGLPP 32218
Query: 61 WMCMRRRTCCTASCWNTCKSPRAIASRCSSGCGPSSQHTTQWKEDXWQRSTYCACGAAXX 120
WMCMRRRTCCTASCWNTCKSPRAIASRCSSGCGPSSQHTTQWKED WQRSTYCACGAA
Sbjct: 32219 WMCMRRRTCCTASCWNTCKSPRAIASRCSSGCGPSSQHTTQWKED*WQRSTYCACGAARS 32398
Query: 121 XXXXXXXXXXXXXXXXXXXXXXXHCGVSRRSHLPSLPLQQAATRIP 166
HCGVSRRSHLPSLPLQQAATRIP
Sbjct: 32399 RPLVLVQPRLRTLPPPTGRRPRRHCGVSRRSHLPSLPLQQAATRIP 32536
>ref|XM_001465275.1| Leishmania infantum JPCM5 hypothetical protein (LinJ20.1840) partial
mRNA
Length = 2268
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 77/163 (47%), Positives = 92/163 (56%)
Frame = +2
Query: 1 SCVPTANPATADEPCRLPLLLQRHPQSHYHREPQWTRLCWXXXXXXXXXXXXXXXQGLPP 60
SC PTA PAT+D+ RLPL Q+HP ++H+E +WT L W +GLP
Sbjct: 1415 SCAPTAKPATSDKRRRLPLPHQQHPHPYHHQELRWTGLRWRRRSRH*QRTSSTTRRGLPS 1594
Query: 61 WMCMRRRTCCTASCWNTCKSPRAIASRCSSGCGPSSQHTTQWKEDXWQRSTYCACGAAXX 120
MCMRR+TCCTA CW+TC+ RAIASRCS GCG SSQ TTQW+ W+R YCACGA
Sbjct: 1595 *MCMRRQTCCTALCWSTCRRRRAIASRCSDGCGRSSQRTTQWRGG*WRRWAYCACGALRS 1774
Query: 121 XXXXXXXXXXXXXXXXXXXXXXXHCGVSRRSHLPSLPLQQAAT 163
+ GVSRRS LPSL + AT
Sbjct: 1775 RPLVRVRPRSRILPPPIGRRARRYSGVSRRSRLPSLRFHRVAT 1903
>emb|AM502238.1| Leishmania infantum chromosome 20
Length = 766771
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 77/163 (47%), Positives = 92/163 (56%)
Frame = -1
Query: 1 SCVPTANPATADEPCRLPLLLQRHPQSHYHREPQWTRLCWXXXXXXXXXXXXXXXQGLPP 60
SC PTA PAT+D+ RLPL Q+HP ++H+E +WT L W +GLP
Sbjct: 736183 SCAPTAKPATSDKRRRLPLPHQQHPHPYHHQELRWTGLRWRRRSRH*QRTSSTTRRGLPS 736004
Query: 61 WMCMRRRTCCTASCWNTCKSPRAIASRCSSGCGPSSQHTTQWKEDXWQRSTYCACGAAXX 120
MCMRR+TCCTA CW+TC+ RAIASRCS GCG SSQ TTQW+ W+R YCACGA
Sbjct: 736003 *MCMRRQTCCTALCWSTCRRRRAIASRCSDGCGRSSQRTTQWRGG*WRRWAYCACGALRS 735824
Query: 121 XXXXXXXXXXXXXXXXXXXXXXXHCGVSRRSHLPSLPLQQAAT 163
+ GVSRRS LPSL + AT
Sbjct: 735823 RPLVRVRPRSRILPPPIGRRARRYSGVSRRSRLPSLRFHRVAT 735695
>ref|XM_001687255.1| Leishmania major hypothetical protein, conserved (LmjF03.0110)
partial mRNA
Length = 2868
Score = 94.0 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 79/163 (48%), Positives = 92/163 (56%)
Frame = +2
Query: 1 SCVPTANPATADEPCRLPLLLQRHPQSHYHREPQWTRLCWXXXXXXXXXXXXXXXQGLPP 60
SC PTA PAT+D+ RLPL Q+HP H+H+E +WTRL W + LP
Sbjct: 1607 SCAPTAKPATSDKRRRLPLPHQQHPHPHHHQELRWTRLRWRRRSRH*RRTSSTTRRELPS 1786
Query: 61 WMCMRRRTCCTASCWNTCKSPRAIASRCSSGCGPSSQHTTQWKEDXWQRSTYCACGAAXX 120
WMCMRRRTCC A CW+TC+ RAIASRCS GCG SSQ TTQW+ W+R YC CGA
Sbjct: 1787 WMCMRRRTCCIALCWSTCRRRRAIASRCSDGCGRSSQLTTQWRGG*WRRWAYCVCGALRS 1966
Query: 121 XXXXXXXXXXXXXXXXXXXXXXXHCGVSRRSHLPSLPLQQAAT 163
H GVS+RS LPSL L + AT
Sbjct: 1967 RPLVLVRPWSRILPPPIGRRARRHSGVSQRSRLPSLRLHRVAT 2095
>gb|AC125735.1| Leishmania major strain Friedlin chromosome 3, complete sequence
Length = 384518
Score = 94.0 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 79/163 (48%), Positives = 92/163 (56%)
Frame = +3
Query: 1 SCVPTANPATADEPCRLPLLLQRHPQSHYHREPQWTRLCWXXXXXXXXXXXXXXXQGLPP 60
SC PTA PAT+D+ RLPL Q+HP H+H+E +WTRL W + LP
Sbjct: 28299 SCAPTAKPATSDKRRRLPLPHQQHPHPHHHQELRWTRLRWRRRSRH*RRTSSTTRRELPS 28478
Query: 61 WMCMRRRTCCTASCWNTCKSPRAIASRCSSGCGPSSQHTTQWKEDXWQRSTYCACGAAXX 120
WMCMRRRTCC A CW+TC+ RAIASRCS GCG SSQ TTQW+ W+R YC CGA
Sbjct: 28479 WMCMRRRTCCIALCWSTCRRRRAIASRCSDGCGRSSQLTTQWRGG*WRRWAYCVCGALRS 28658
Query: 121 XXXXXXXXXXXXXXXXXXXXXXXHCGVSRRSHLPSLPLQQAAT 163
H GVS+RS LPSL L + AT
Sbjct: 28659 RPLVLVRPWSRILPPPIGRRARRHSGVSQRSRLPSLRLHRVAT 28787
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.327 0.133 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 752895374
Number of extensions: 15999646
Number of successful extensions: 250370
Number of sequences better than 10: 66
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 248835
Number of HSP's successfully gapped: 96
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 15 (7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.0 bits)
S2: 78 (34.7 bits)
Query= gi|154331742|ref|NC_009296.1|:subseq(32038,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 3
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
ref|XM_001561552.1| Leishmania braziliensis MHOM/BR/75/M2904 hyp... 216 2e-54
emb|AM494940.1| Leishmania braziliensis chromosome 3 216 2e-54
ref|XM_001687255.1| Leishmania major hypothetical protein, conse... 105 7e-21
gb|AC125735.1| Leishmania major strain Friedlin chromosome 3, co... 105 7e-21
ref|XM_001465275.1| Leishmania infantum JPCM5 hypothetical prote... 94 1e-17
emb|AM502238.1| Leishmania infantum chromosome 20 94 1e-17
>ref|XM_001561552.1| Leishmania braziliensis MHOM/BR/75/M2904 hypothetical protein,
conserved (LbrM03_V2.0120) partial mRNA
Length = 2697
Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats.
Identities = 133/165 (80%), Positives = 133/165 (80%)
Frame = +3
Query: 1 AACLPRIQPQPTSPVVSLSCSSGTRSPTTIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
AACLPRIQPQPTSPVVSLSCSSGTRSPTTI
Sbjct: 1404 AACLPRIQPQPTSPVVSLSCSSGTRSPTTIGSHSGQGYAGGGDRGTDGGHRRRRGRDYRR 1583
Query: 61 XCAUEGEPAALPHAGTPARVPAQSPADAAVVVVHRRSTPHNGRKTNGSGRPTALVEQHAP 120
CA EGEPAALPHAGTPARVPAQSPADAAVVVVHRRSTPHNGRKTNGSGRPTALVEQHAP
Sbjct: 1584 GCA*EGEPAALPHAGTPARVPAQSPADAAVVVVHRRSTPHNGRKTNGSGRPTALVEQHAP 1763
Query: 121 GRWYWCSLGCEPFRHQRGGVHGGTAESVGGRISLLCRFSKQRLGY 165
GRWYWCSLGCEPFRHQRGGVHGGTAESVGGRISLLCRFSKQRLGY
Sbjct: 1764 GRWYWCSLGCEPFRHQRGGVHGGTAESVGGRISLLCRFSKQRLGY 1898
>emb|AM494940.1| Leishmania braziliensis chromosome 3
Length = 388728
Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats.
Identities = 133/165 (80%), Positives = 133/165 (80%)
Frame = +3
Query: 1 AACLPRIQPQPTSPVVSLSCSSGTRSPTTIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
AACLPRIQPQPTSPVVSLSCSSGTRSPTTI
Sbjct: 32040 AACLPRIQPQPTSPVVSLSCSSGTRSPTTIGSHSGQGYAGGGDRGTDGGHRRRRGRDYRR 32219
Query: 61 XCAUEGEPAALPHAGTPARVPAQSPADAAVVVVHRRSTPHNGRKTNGSGRPTALVEQHAP 120
CA EGEPAALPHAGTPARVPAQSPADAAVVVVHRRSTPHNGRKTNGSGRPTALVEQHAP
Sbjct: 32220 GCA*EGEPAALPHAGTPARVPAQSPADAAVVVVHRRSTPHNGRKTNGSGRPTALVEQHAP 32399
Query: 121 GRWYWCSLGCEPFRHQRGGVHGGTAESVGGRISLLCRFSKQRLGY 165
GRWYWCSLGCEPFRHQRGGVHGGTAESVGGRISLLCRFSKQRLGY
Sbjct: 32400 GRWYWCSLGCEPFRHQRGGVHGGTAESVGGRISLLCRFSKQRLGY 32534
>ref|XM_001687255.1| Leishmania major hypothetical protein, conserved (LmjF03.0110)
partial mRNA
Length = 2868
Score = 105 bits (261), Expect = 7e-21, Method: Composition-based stats.
Identities = 90/165 (54%), Positives = 101/165 (61%)
Frame = +3
Query: 1 AACLPRIQPQPTSPVVSLSCSSGTRSPTTIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
AA LPR + Q TS VVSLS +S TR+PTTI
Sbjct: 1608 AARLPRSRRQATSAVVSLSRTSSTRTPTTIRSYDGQGCAGGGDRGTDGGHRRRRDGNYRR 1787
Query: 61 XCAUEGEPAALPHAGTPARVPAQSPADAAVVVVHRRSTPHNGRKTNGSGRPTALVEQHAP 120
CA EGEPAALP+AG PA AQS ADAA+ VV RRS+PHNG +G G PTA VE++AP
Sbjct: 1788 GCA*EGEPAALPYAGAPAGGAAQSQADAAMAVVDRRSSPHNGGAADGGGGPTASVERYAP 1967
Query: 121 GRWYWCSLGCEPFRHQRGGVHGGTAESVGGRISLLCRFSKQRLGY 165
GRW WC G E FR Q GGVHGGTAESV GR SLLC F+ RLG+
Sbjct: 1968 GRWCWCGRGREFFRRQ*GGVHGGTAESVNGRGSLLCGFTG*RLGH 2102
>gb|AC125735.1| Leishmania major strain Friedlin chromosome 3, complete sequence
Length = 384518
Score = 105 bits (261), Expect = 7e-21, Method: Composition-based stats.
Identities = 90/165 (54%), Positives = 101/165 (61%)
Frame = +1
Query: 1 AACLPRIQPQPTSPVVSLSCSSGTRSPTTIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
AA LPR + Q TS VVSLS +S TR+PTTI
Sbjct: 28300 AARLPRSRRQATSAVVSLSRTSSTRTPTTIRSYDGQGCAGGGDRGTDGGHRRRRDGNYRR 28479
Query: 61 XCAUEGEPAALPHAGTPARVPAQSPADAAVVVVHRRSTPHNGRKTNGSGRPTALVEQHAP 120
CA EGEPAALP+AG PA AQS ADAA+ VV RRS+PHNG +G G PTA VE++AP
Sbjct: 28480 GCA*EGEPAALPYAGAPAGGAAQSQADAAMAVVDRRSSPHNGGAADGGGGPTASVERYAP 28659
Query: 121 GRWYWCSLGCEPFRHQRGGVHGGTAESVGGRISLLCRFSKQRLGY 165
GRW WC G E FR Q GGVHGGTAESV GR SLLC F+ RLG+
Sbjct: 28660 GRWCWCGRGREFFRRQ*GGVHGGTAESVNGRGSLLCGFTG*RLGH 28794
>ref|XM_001465275.1| Leishmania infantum JPCM5 hypothetical protein (LinJ20.1840) partial
mRNA
Length = 2268
Score = 94.4 bits (233), Expect = 1e-17, Method: Composition-based stats.
Identities = 83/158 (52%), Positives = 91/158 (57%)
Frame = +3
Query: 2 ACLPRIQPQPTSPVVSLSCSSGTRSPTTIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 61
A LPR Q Q TS VVSLS +S T +PTTI
Sbjct: 1419 ARLPRSQRQATSAVVSLSRTSSTPTPTTIRSYDGQGCAGGGDRGTDSGHRRRRDGDYRRR 1598
Query: 62 CAUEGEPAALPHAGTPARVPAQSPADAAVVVVHRRSTPHNGRKTNGSGRPTALVEQHAPG 121
CA EG+PAALP+AG PA AQS ADAA+ VV RRS PHNG +G G PTA VE +APG
Sbjct: 1599 CA*EGKPAALPYAGAPAGGAAQSQADAAMAVVDRRSAPHNGGAVDGGGGPTAPVEHYAPG 1778
Query: 122 RWYWCSLGCEPFRHQRGGVHGGTAESVGGRISLLCRFS 159
RW C G E FR Q GGVHGGTAESV GR LLC F+
Sbjct: 1779 RWCGCGRGREFFRRQ*GGVHGGTAESVDGRGFLLCGFT 1892
>emb|AM502238.1| Leishmania infantum chromosome 20
Length = 766771
Score = 94.4 bits (233), Expect = 1e-17, Method: Composition-based stats.
Identities = 83/158 (52%), Positives = 91/158 (57%)
Frame = -2
Query: 2 ACLPRIQPQPTSPVVSLSCSSGTRSPTTIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 61
A LPR Q Q TS VVSLS +S T +PTTI
Sbjct: 736179 ARLPRSQRQATSAVVSLSRTSSTPTPTTIRSYDGQGCAGGGDRGTDSGHRRRRDGDYRRR 736000
Query: 62 CAUEGEPAALPHAGTPARVPAQSPADAAVVVVHRRSTPHNGRKTNGSGRPTALVEQHAPG 121
CA EG+PAALP+AG PA AQS ADAA+ VV RRS PHNG +G G PTA VE +APG
Sbjct: 735999 CA*EGKPAALPYAGAPAGGAAQSQADAAMAVVDRRSAPHNGGAVDGGGGPTAPVEHYAPG 735820
Query: 122 RWYWCSLGCEPFRHQRGGVHGGTAESVGGRISLLCRFS 159
RW C G E FR Q GGVHGGTAESV GR LLC F+
Sbjct: 735819 RWCGCGRGREFFRRQ*GGVHGGTAESVDGRGFLLCGFT 735706
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.318 0.133 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 548789128
Number of extensions: 9011561
Number of successful extensions: 73542
Number of sequences better than 10: 11
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 73486
Number of HSP's successfully gapped: 11
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 16 (7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 78 (34.7 bits)
Query= gi|154331742|ref|NC_009296.1|:subseq(32038,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 3
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
ref|XM_001561552.1| Leishmania braziliensis MHOM/BR/75/M2904 hyp... 159 4e-37
emb|AM494940.1| Leishmania braziliensis chromosome 3 159 4e-37
ref|XM_001687255.1| Leishmania major hypothetical protein, conse... 128 6e-28
gb|AC125735.1| Leishmania major strain Friedlin chromosome 3, co... 128 6e-28
ref|XM_001465275.1| Leishmania infantum JPCM5 hypothetical prote... 125 6e-27
emb|AM502238.1| Leishmania infantum chromosome 20 125 6e-27
ref|XM_811992.1| Trypanosoma cruzi strain CL Brener hypothetical... 59 4e-07
gb|AY167028.1| Trypanosoma cruzi 62 kDa protein Tc-1 gene, compl... 59 4e-07
ref|XM_807687.1| Trypanosoma cruzi strain CL Brener hypothetical... 59 5e-07
ref|XM_817472.1| Trypanosoma brucei TREU927 hypothetical protein... 45 0.005
>ref|XM_001561552.1| Leishmania braziliensis MHOM/BR/75/M2904 hypothetical protein,
conserved (LbrM03_V2.0120) partial mRNA
Length = 2697
Score = 159 bits (401), Expect = 4e-37, Method: Composition-based stats.
Identities = 102/145 (70%), Positives = 102/145 (70%)
Frame = +1
Query: 1 LRAYREXXXXXXXXXXXXXXXXXXXXXXXXXXTVDKAMLEAEIAALTEVIVDDEAGTTAV 60
LRAYRE TVDKAMLEAEIAALTEVIVDDEAGTTAV
Sbjct: 1405 LRAYRESSHSRRALSSPSPAPAAPAVPLPSGATVDKAMLEAEIAALTEVIVDDEAGTTAV 1584
Query: 61 DVHEKANLLHCLMLEHLQESPRNRQQMQQWLWSIVAAHHTMEGRLMAAVDLLRLWSSTLX 120
DVHEKANLLHCLMLEHLQESPRNRQQMQQWLWSIVAAHHTMEGRLMAAVDLLRLWSSTL
Sbjct: 1585 DVHEKANLLHCLMLEHLQESPRNRQQMQQWLWSIVAAHHTMEGRLMAAVDLLRLWSSTLP 1764
Query: 121 XXXXXXXXXXXXXXXXGEASTAALR 145
GEASTAALR
Sbjct: 1765 AAGTGAASAANPSATNGEASTAALR 1839
>emb|AM494940.1| Leishmania braziliensis chromosome 3
Length = 388728
Score = 159 bits (401), Expect = 4e-37, Method: Composition-based stats.
Identities = 102/145 (70%), Positives = 102/145 (70%)
Frame = +1
Query: 1 LRAYREXXXXXXXXXXXXXXXXXXXXXXXXXXTVDKAMLEAEIAALTEVIVDDEAGTTAV 60
LRAYRE TVDKAMLEAEIAALTEVIVDDEAGTTAV
Sbjct: 32041 LRAYRESSHSRRALSSPSPAPAAPAVPLPSGATVDKAMLEAEIAALTEVIVDDEAGTTAV 32220
Query: 61 DVHEKANLLHCLMLEHLQESPRNRQQMQQWLWSIVAAHHTMEGRLMAAVDLLRLWSSTLX 120
DVHEKANLLHCLMLEHLQESPRNRQQMQQWLWSIVAAHHTMEGRLMAAVDLLRLWSSTL
Sbjct: 32221 DVHEKANLLHCLMLEHLQESPRNRQQMQQWLWSIVAAHHTMEGRLMAAVDLLRLWSSTLP 32400
Query: 121 XXXXXXXXXXXXXXXXGEASTAALR 145
GEASTAALR
Sbjct: 32401 AAGTGAASAANPSATNGEASTAALR 32475
>ref|XM_001687255.1| Leishmania major hypothetical protein, conserved (LmjF03.0110)
partial mRNA
Length = 2868
Score = 128 bits (321), Expect = 6e-28, Method: Composition-based stats.
Identities = 91/166 (54%), Positives = 96/166 (57%)
Frame = +1
Query: 1 LRAYREXXXXXXXXXXXXXXXXXXXXXXXXXXTVDKAMLEAEIAALTEVIVDDEAGTTAV 60
LRAYRE T+DKA LEAEIAALT IVDDE GTT V
Sbjct: 1609 LRAYREAGDKRQAPSSPSPAPAAPAPPPPSGATMDKAALEAEIAALTADIVDDETGTTVV 1788
Query: 61 DVHEKANLLHCLMLEHLQESPRNRQQMQQWLWSIVAAHHTMEGRLMAAVDLLRLWSSTLX 120
DVHEKANLLHCLMLEHLQE+PRNR+QMQ+WLWSIVAAHHTMEGRLMAAV LLRLWS+TL
Sbjct: 1789 DVHEKANLLHCLMLEHLQEAPRNRKQMQRWLWSIVAAHHTMEGRLMAAVGLLRLWSATLP 1968
Query: 121 XXXXXXXXXXXXXXXXGEASTAALRXXXXXXXXXXXXXXXXXXDTA 166
EA TAA R DTA
Sbjct: 1969 AAGAGAAVVANSSAANREACTAAQRSQSTVAAPFSAASPGSDLDTA 2106
>gb|AC125735.1| Leishmania major strain Friedlin chromosome 3, complete sequence
Length = 384518
Score = 128 bits (321), Expect = 6e-28, Method: Composition-based stats.
Identities = 91/166 (54%), Positives = 96/166 (57%)
Frame = +2
Query: 1 LRAYREXXXXXXXXXXXXXXXXXXXXXXXXXXTVDKAMLEAEIAALTEVIVDDEAGTTAV 60
LRAYRE T+DKA LEAEIAALT IVDDE GTT V
Sbjct: 28301 LRAYREAGDKRQAPSSPSPAPAAPAPPPPSGATMDKAALEAEIAALTADIVDDETGTTVV 28480
Query: 61 DVHEKANLLHCLMLEHLQESPRNRQQMQQWLWSIVAAHHTMEGRLMAAVDLLRLWSSTLX 120
DVHEKANLLHCLMLEHLQE+PRNR+QMQ+WLWSIVAAHHTMEGRLMAAV LLRLWS+TL
Sbjct: 28481 DVHEKANLLHCLMLEHLQEAPRNRKQMQRWLWSIVAAHHTMEGRLMAAVGLLRLWSATLP 28660
Query: 121 XXXXXXXXXXXXXXXXGEASTAALRXXXXXXXXXXXXXXXXXXDTA 166
EA TAA R DTA
Sbjct: 28661 AAGAGAAVVANSSAANREACTAAQRSQSTVAAPFSAASPGSDLDTA 28798
>ref|XM_001465275.1| Leishmania infantum JPCM5 hypothetical protein (LinJ20.1840) partial
mRNA
Length = 2268
Score = 125 bits (313), Expect = 6e-27, Method: Composition-based stats.
Identities = 86/145 (59%), Positives = 92/145 (63%)
Frame = +1
Query: 1 LRAYREXXXXXXXXXXXXXXXXXXXXXXXXXXTVDKAMLEAEIAALTEVIVDDEAGTTAV 60
LRAYRE T+D+A LEAEIAALT IVDDE GTT V
Sbjct: 1417 LRAYREASDKRQAPSSPSPAPAAPPPLPPSGATMDRAALEAEIAALTADIVDDETGTTVV 1596
Query: 61 DVHEKANLLHCLMLEHLQESPRNRQQMQQWLWSIVAAHHTMEGRLMAAVDLLRLWSSTLX 120
DVHEKANLLHCLMLEHLQE+PRNR+QMQ+WLWSIVAAHHTMEGRLMAAV LLRLWS+TL
Sbjct: 1597 DVHEKANLLHCLMLEHLQEAPRNRKQMQRWLWSIVAAHHTMEGRLMAAVGLLRLWSTTLP 1776
Query: 121 XXXXXXXXXXXXXXXXGEASTAALR 145
EA TA R
Sbjct: 1777 AAGAGAAAVANSSAANREACTAVQR 1851
>emb|AM502238.1| Leishmania infantum chromosome 20
Length = 766771
Score = 125 bits (313), Expect = 6e-27, Method: Composition-based stats.
Identities = 86/145 (59%), Positives = 92/145 (63%)
Frame = -3
Query: 1 LRAYREXXXXXXXXXXXXXXXXXXXXXXXXXXTVDKAMLEAEIAALTEVIVDDEAGTTAV 60
LRAYRE T+D+A LEAEIAALT IVDDE GTT V
Sbjct: 736181 LRAYREASDKRQAPSSPSPAPAAPPPLPPSGATMDRAALEAEIAALTADIVDDETGTTVV 736002
Query: 61 DVHEKANLLHCLMLEHLQESPRNRQQMQQWLWSIVAAHHTMEGRLMAAVDLLRLWSSTLX 120
DVHEKANLLHCLMLEHLQE+PRNR+QMQ+WLWSIVAAHHTMEGRLMAAV LLRLWS+TL
Sbjct: 736001 DVHEKANLLHCLMLEHLQEAPRNRKQMQRWLWSIVAAHHTMEGRLMAAVGLLRLWSTTLP 735822
Query: 121 XXXXXXXXXXXXXXXXGEASTAALR 145
EA TA R
Sbjct: 735821 AAGAGAAAVANSSAANREACTAVQR 735747
>ref|XM_811992.1| Trypanosoma cruzi strain CL Brener hypothetical protein partial mRNA
Length = 2295
Score = 59.3 bits (142), Expect = 4e-07, Method: Composition-based stats.
Identities = 31/66 (46%), Positives = 47/66 (71%)
Frame = +1
Query: 46 LTEVIVDDEAGTTAVDVHEKANLLHCLMLEHLQESPRNRQQMQQWLWSIVAAHHTMEGRL 105
L + +VD E G V+VHE A LH ++L+ L++SPR R++ Q+WLW IV+A+H +E RL
Sbjct: 1156 LLKDVVDTETGEV-VNVHETATSLHGVILDALRDSPRRRREAQRWLWLIVSAYHVIETRL 1332
Query: 106 MAAVDL 111
+ A D+
Sbjct: 1333 VTACDV 1350
>gb|AY167028.1| Trypanosoma cruzi 62 kDa protein Tc-1 gene, complete cds
Length = 1653
Score = 59.3 bits (142), Expect = 4e-07, Method: Composition-based stats.
Identities = 31/66 (46%), Positives = 47/66 (71%)
Frame = +1
Query: 46 LTEVIVDDEAGTTAVDVHEKANLLHCLMLEHLQESPRNRQQMQQWLWSIVAAHHTMEGRL 105
L + +VD E G V+VHE A LH ++L+ L++SPR R++ Q+WLW IV+A+H +E RL
Sbjct: 670 LLKDVVDTETGEV-VNVHETATSLHGVILDALRDSPRRRREAQRWLWLIVSAYHVIETRL 846
Query: 106 MAAVDL 111
+ A D+
Sbjct: 847 VTACDV 864
>ref|XM_807687.1| Trypanosoma cruzi strain CL Brener hypothetical protein partial mRNA
Length = 2295
Score = 58.9 bits (141), Expect = 5e-07, Method: Composition-based stats.
Identities = 31/66 (46%), Positives = 47/66 (71%)
Frame = +1
Query: 46 LTEVIVDDEAGTTAVDVHEKANLLHCLMLEHLQESPRNRQQMQQWLWSIVAAHHTMEGRL 105
L + +VD E G V+VHE A LH ++L+ L++SPR R++ Q+WLW IV+A+H +E RL
Sbjct: 1156 LLKDVVDTETGEV-VNVHETATSLHGVILDALRDSPRRRREAQRWLWLIVSAYHVIETRL 1332
Query: 106 MAAVDL 111
+ A D+
Sbjct: 1333 VTACDV 1350
>ref|XM_817472.1| Trypanosoma brucei TREU927 hypothetical protein (Tb10.70.4370)
partial mRNA
Length = 2355
Score = 45.4 bits (106), Expect = 0.005, Method: Composition-based stats.
Identities = 25/60 (41%), Positives = 40/60 (66%)
Frame = +1
Query: 50 IVDDEAGTTAVDVHEKANLLHCLMLEHLQESPRNRQQMQQWLWSIVAAHHTMEGRLMAAV 109
IVD E G +DV +A LL+ ++ + L++ PR+R++ Q+ LW IV+A + +E RL AV
Sbjct: 1216 IVDAETGEV-IDVENEATLLNGVLADVLRDIPRDRREAQRCLWRIVSAFNVLEERLAVAV 1392
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.318 0.126 1.10e-309
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 298390784
Number of extensions: 3445447
Number of successful extensions: 21227
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 21225
Number of HSP's successfully gapped: 0
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 16 (7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 78 (34.7 bits)
Query= gi|154331997|ref|NC_009297.1|:subseq(13842,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 4
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
ref|XM_001561641.1| Leishmania braziliensis MHOM/BR/75/M2904 cal... 236 2e-60
emb|AM494941.1| Leishmania braziliensis chromosome 4 236 2e-60
ref|XM_001462801.1| Leishmania infantum calcium-translocating P-... 166 2e-39
emb|AM502222.1| Leishmania infantum chromosome 4 166 2e-39
gb|AY791850.1| Leishmania donovani sarcoplasmic-endoplasmic reti... 166 2e-39
emb|AL389894.4|LMFLCHR4A Leishmania major Friedlin chromosome 4,... 161 8e-38
ref|XM_883419.1| Leishmania major strain Friedlin organelle-type... 161 8e-38
gb|U70540.1|LMU70540 Leishmania mexicana amazonensis organelle-t... 156 2e-36
ref|XM_839917.1| Trypanosoma brucei TREU927 calcium-translocatin... 39 0.45
gb|AC113585.4| Trypanosoma brucei chromosome 5 clone RPCI93-27M3... 39 0.45
gb|AC159455.1| Trypanosoma brucei chromosome 5 clone RPCI93-6E7,... 39 0.45
gb|M73769.1|TRBPATPA T.brucei P-type ATPase gene, complete cds 39 0.64
ref|XM_001997475.1| Drosophila grimshawi GH24751 (Dgri\GH24751),... 35 5.8
>ref|XM_001561641.1| Leishmania braziliensis MHOM/BR/75/M2904 calcium-translocating P-type
ATPase (LbrM04_V2.0030) partial mRNA
Length = 3078
Score = 236 bits (601), Expect = 2e-60, Method: Composition-based stats.
Identities = 146/166 (87%), Positives = 146/166 (87%)
Frame = +3
Query: 1 QAMHSYHVXGWSHRTPHTENIEHRDDEGQSHVRHGGRPPLHRICLPPHSRPEATGSLUPS 60
QAMHSYHV GWSHRTPHTENIEHRDDEGQSHVRHGGRPPLHRICLPPHSRPEATGSL PS
Sbjct: 1572 QAMHSYHV*GWSHRTPHTENIEHRDDEGQSHVRHGGRPPLHRICLPPHSRPEATGSL*PS 1751
Query: 61 EVUSHRDUPHFCWRLRHAGPAAEGGNRGDYQVPXXXXXXXXXXXXQEGDGRGGVPPNRTH 120
EV SHRD PHFCWRLRHAGPAAEGGNRGDYQVP QEGDGRGGVPPNRTH
Sbjct: 1752 EV*SHRD*PHFCWRLRHAGPAAEGGNRGDYQVPHSRDSRHCHHR*QEGDGRGGVPPNRTH 1931
Query: 121 AMUTERGAXLHWLRAGSDDPSTETGGGTECCAFQSHUPLPXDAAGE 166
AM TERGA LHWLRAGSDDPSTETGGGTECCAFQSH PLP DAAGE
Sbjct: 1932 AM*TERGA*LHWLRAGSDDPSTETGGGTECCAFQSH*PLP*DAAGE 2069
>emb|AM494941.1| Leishmania braziliensis chromosome 4
Length = 475968
Score = 236 bits (601), Expect = 2e-60, Method: Composition-based stats.
Identities = 146/166 (87%), Positives = 146/166 (87%)
Frame = +1
Query: 1 QAMHSYHVXGWSHRTPHTENIEHRDDEGQSHVRHGGRPPLHRICLPPHSRPEATGSLUPS 60
QAMHSYHV GWSHRTPHTENIEHRDDEGQSHVRHGGRPPLHRICLPPHSRPEATGSL PS
Sbjct: 13843 QAMHSYHV*GWSHRTPHTENIEHRDDEGQSHVRHGGRPPLHRICLPPHSRPEATGSL*PS 14022
Query: 61 EVUSHRDUPHFCWRLRHAGPAAEGGNRGDYQVPXXXXXXXXXXXXQEGDGRGGVPPNRTH 120
EV SHRD PHFCWRLRHAGPAAEGGNRGDYQVP QEGDGRGGVPPNRTH
Sbjct: 14023 EV*SHRD*PHFCWRLRHAGPAAEGGNRGDYQVPHSRDSRHCHHR*QEGDGRGGVPPNRTH 14202
Query: 121 AMUTERGAXLHWLRAGSDDPSTETGGGTECCAFQSHUPLPXDAAGE 166
AM TERGA LHWLRAGSDDPSTETGGGTECCAFQSH PLP DAAGE
Sbjct: 14203 AM*TERGA*LHWLRAGSDDPSTETGGGTECCAFQSH*PLP*DAAGE 14340
>ref|XM_001462801.1| Leishmania infantum calcium-translocating P-type ATPase (LinJ04.0010)
partial mRNA
Length = 3069
Score = 166 bits (420), Expect = 2e-39, Method: Composition-based stats.
Identities = 106/166 (63%), Positives = 121/166 (72%)
Frame = +3
Query: 1 QAMHSYHVXGWSHRTPHTENIEHRDDEGQSHVRHGGRPPLHRICLPPHSRPEATGSLUPS 60
QAMHSYHV GWSH T HT+N E+ D E +SHVRH G PPL+R+CL PHSRPEAT S+ S
Sbjct: 1572 QAMHSYHV*GWSHFTSHTKNGEYCDGEHRSHVRHRGSPPLYRVCLSPHSRPEATESV*SS 1751
Query: 61 EVUSHRDUPHFCWRLRHAGPAAEGGNRGDYQVPXXXXXXXXXXXXQEGDGRGGVPPNRTH 120
+V SHR+ PHFC RLRHAGP+A GG R + QVP QEGD RG VPPNR H
Sbjct: 1752 QV*SHRERPHFCRRLRHAGPSAGGGGRCNRQVPNGGDSRHRHHRRQEGDSRGSVPPNRAH 1931
Query: 121 AMUTERGAXLHWLRAGSDDPSTETGGGTECCAFQSHUPLPXDAAGE 166
A+ ++G LH LRAGSDDPST+ GGG +CCAFQSH PLP DA GE
Sbjct: 1932 AI*ADKGVELHRLRAGSDDPSTKAGGGEQCCAFQSHRPLP*DAVGE 2069
>emb|AM502222.1| Leishmania infantum chromosome 4
Length = 481046
Score = 166 bits (420), Expect = 2e-39, Method: Composition-based stats.
Identities = 106/166 (63%), Positives = 121/166 (72%)
Frame = +2
Query: 1 QAMHSYHVXGWSHRTPHTENIEHRDDEGQSHVRHGGRPPLHRICLPPHSRPEATGSLUPS 60
QAMHSYHV GWSH T HT+N E+ D E +SHVRH G PPL+R+CL PHSRPEAT S+ S
Sbjct: 7826 QAMHSYHV*GWSHFTSHTKNGEYCDGEHRSHVRHRGSPPLYRVCLSPHSRPEATESV*SS 8005
Query: 61 EVUSHRDUPHFCWRLRHAGPAAEGGNRGDYQVPXXXXXXXXXXXXQEGDGRGGVPPNRTH 120
+V SHR+ PHFC RLRHAGP+A GG R + QVP QEGD RG VPPNR H
Sbjct: 8006 QV*SHRERPHFCRRLRHAGPSAGGGGRCNRQVPNGGDSRHRHHRRQEGDSRGSVPPNRAH 8185
Query: 121 AMUTERGAXLHWLRAGSDDPSTETGGGTECCAFQSHUPLPXDAAGE 166
A+ ++G LH LRAGSDDPST+ GGG +CCAFQSH PLP DA GE
Sbjct: 8186 AI*ADKGVELHRLRAGSDDPSTKAGGGEQCCAFQSHRPLP*DAVGE 8323
>gb|AY791850.1| Leishmania donovani sarcoplasmic-endoplasmic reticulum calcium ATPase
(serca) gene, complete cds
Length = 3763
Score = 166 bits (420), Expect = 2e-39, Method: Composition-based stats.
Identities = 106/166 (63%), Positives = 121/166 (72%)
Frame = +2
Query: 1 QAMHSYHVXGWSHRTPHTENIEHRDDEGQSHVRHGGRPPLHRICLPPHSRPEATGSLUPS 60
QAMHSYHV GWSH T HT+N E+ D E +SHVRH G PPL+R+CL PHSRPEAT S+ S
Sbjct: 1751 QAMHSYHV*GWSHFTSHTKNGEYCDGEHRSHVRHRGSPPLYRVCLSPHSRPEATESV*SS 1930
Query: 61 EVUSHRDUPHFCWRLRHAGPAAEGGNRGDYQVPXXXXXXXXXXXXQEGDGRGGVPPNRTH 120
+V SHR+ PHFC RLRHAGP+A GG R + QVP QEGD RG VPPNR H
Sbjct: 1931 QV*SHRERPHFCRRLRHAGPSAGGGGRCNRQVPNGGDSRHRHHRRQEGDSRGSVPPNRAH 2110
Query: 121 AMUTERGAXLHWLRAGSDDPSTETGGGTECCAFQSHUPLPXDAAGE 166
A+ ++G LH LRAGSDDPST+ GGG +CCAFQSH PLP DA GE
Sbjct: 2111 AI*ADKGVELHRLRAGSDDPSTKAGGGEQCCAFQSHRPLP*DAVGE 2248
>emb|AL389894.4|LMFLCHR4A Leishmania major Friedlin chromosome 4, left end
Length = 225394
Score = 161 bits (407), Expect = 8e-38, Method: Composition-based stats.
Identities = 102/166 (61%), Positives = 116/166 (69%)
Frame = +3
Query: 1 QAMHSYHVXGWSHRTPHTENIEHRDDEGQSHVRHGGRPPLHRICLPPHSRPEATGSLUPS 60
QA+HSYHV GWSH + HTEN E+RD E +S+VR G PPL+R CL P SRPEATGS+ S
Sbjct: 6207 QALHSYHV*GWSHFSSHTENGEYRDGEHRSYVRRRGGPPLYRFCLSPPSRPEATGSVRSS 6386
Query: 61 EVUSHRDUPHFCWRLRHAGPAAEGGNRGDYQVPXXXXXXXXXXXXQEGDGRGGVPPNRTH 120
+V SHR+ PH LRHAGP+AEGG R D QV QEGD RG VPPNRTH
Sbjct: 6387 QV*SHRERPHVYRCLRHAGPSAEGGGRCDRQVSNSGDSRHRHHRRQEGDSRGSVPPNRTH 6566
Query: 121 AMUTERGAXLHWLRAGSDDPSTETGGGTECCAFQSHUPLPXDAAGE 166
A+ + G LH L AGSDDPST+ GGG +CCAFQSH PLP DA GE
Sbjct: 6567 AI*ADNGVELHRL*AGSDDPSTKAGGGEQCCAFQSHRPLP*DAVGE 6704
>ref|XM_883419.1| Leishmania major strain Friedlin organelle-type calcium ATPase
(LT.01) partial mRNA
Length = 3072
Score = 161 bits (407), Expect = 8e-38, Method: Composition-based stats.
Identities = 102/166 (61%), Positives = 116/166 (69%)
Frame = +3
Query: 1 QAMHSYHVXGWSHRTPHTENIEHRDDEGQSHVRHGGRPPLHRICLPPHSRPEATGSLUPS 60
QA+HSYHV GWSH + HTEN E+RD E +S+VR G PPL+R CL P SRPEATGS+ S
Sbjct: 1572 QALHSYHV*GWSHFSSHTENGEYRDGEHRSYVRRRGGPPLYRFCLSPPSRPEATGSVRSS 1751
Query: 61 EVUSHRDUPHFCWRLRHAGPAAEGGNRGDYQVPXXXXXXXXXXXXQEGDGRGGVPPNRTH 120
+V SHR+ PH LRHAGP+AEGG R D QV QEGD RG VPPNRTH
Sbjct: 1752 QV*SHRERPHVYRCLRHAGPSAEGGGRCDRQVSNSGDSRHRHHRRQEGDSRGSVPPNRTH 1931
Query: 121 AMUTERGAXLHWLRAGSDDPSTETGGGTECCAFQSHUPLPXDAAGE 166
A+ + G LH L AGSDDPST+ GGG +CCAFQSH PLP DA GE
Sbjct: 1932 AI*ADNGVELHRL*AGSDDPSTKAGGGEQCCAFQSHRPLP*DAVGE 2069
>gb|U70540.1|LMU70540 Leishmania mexicana amazonensis organelle-type Ca2+-ATPase gene,
complete cds
Length = 4156
Score = 156 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 102/166 (61%), Positives = 119/166 (71%)
Frame = +1
Query: 1 QAMHSYHVXGWSHRTPHTENIEHRDDEGQSHVRHGGRPPLHRICLPPHSRPEATGSLUPS 60
QAMHSYHV GWS+ T HTE+ E+RD E +SHVRH G PPL+R+CL PHSRPEATGS+ S
Sbjct: 2122 QAMHSYHV*GWSYLTSHTEDGEYRDGEHRSHVRH*GSPPLYRVCLSPHSRPEATGSV*SS 2301
Query: 61 EVUSHRDUPHFCWRLRHAGPAAEGGNRGDYQVPXXXXXXXXXXXXQEGDGRGGVPPNRTH 120
+V SHR PH LRH+GP+AEGG R D QV QEGDGRG VPP+RTH
Sbjct: 2302 QV*SHRQPPHVGRGLRHSGPSAEGGGRCDRQVSNSRDSRHRHHRRQEGDGRGSVPPDRTH 2481
Query: 121 AMUTERGAXLHWLRAGSDDPSTETGGGTECCAFQSHUPLPXDAAGE 166
+ ++G LH LRAGSDDPST+ GGG +CCAFQSH PL +A GE
Sbjct: 2482 VI*ADKGIELHRLRAGSDDPSTKAGGGEQCCAFQSHRPLS*NAVGE 2619
>ref|XM_839917.1| Trypanosoma brucei TREU927 calcium-translocating P-type ATPase
partial mRNA
Length = 3036
Score = 39.3 bits (90), Expect = 0.45, Method: Composition-based stats.
Identities = 44/164 (26%), Positives = 59/164 (35%), Gaps = 1/164 (0%)
Frame = +3
Query: 2 AMHSYHVXGWSHRTPHTENIEHRDDEGQSHVRHGGRPPLHRICLPPHSRPEATGSLUPSE 61
+ H+ H W T E ++R R LH ICL A
Sbjct: 1566 SFHTRHAGQWCRCTTQCHTPEAHYRTIGQNIRWCQRSSLHWICL*TDKGSSAAAPERSCN 1745
Query: 62 VUSHRDUPHFCWRLRHAGPAAEGGNRGDYQVPXXXXXXXXXXXXQEGDGRGGVPPNRTHA 121
R P+ CW +R+A PA G R +VP +GDG + T
Sbjct: 1746 FRGCRI*PYICWCMRYA*PAT*GSARCYREVPHRGHPCCRHHWRPQGDGGSDLLQTGTIV 1925
Query: 122 MUT-ERGAXLHWLRAGSDDPSTETGGGTECCAFQSHUPLPXDAA 164
+ A L+ RA +D ET + FQSH +P DAA
Sbjct: 1926 FYSGHHWAELYGTRARCNDTGAET*SSIDSRTFQSHGSIPQDAA 2057
>gb|AC113585.4| Trypanosoma brucei chromosome 5 clone RPCI93-27M3, complete sequence
Length = 127380
Score = 39.3 bits (90), Expect = 0.45, Method: Composition-based stats.
Identities = 44/164 (26%), Positives = 59/164 (35%), Gaps = 1/164 (0%)
Frame = -1
Query: 2 AMHSYHVXGWSHRTPHTENIEHRDDEGQSHVRHGGRPPLHRICLPPHSRPEATGSLUPSE 61
+ H+ H W T E ++R R LH ICL A
Sbjct: 117675 SFHTRHAGQWCRCTTQCHTPEAHYRTIGQNIRWCQRSSLHWICL*TDKGSSAAAPERSCN 117496
Query: 62 VUSHRDUPHFCWRLRHAGPAAEGGNRGDYQVPXXXXXXXXXXXXQEGDGRGGVPPNRTHA 121
R P+ CW +R+A PA G R +VP +GDG + T
Sbjct: 117495 FRGCRI*PYICWCMRYA*PAT*GSARCYREVPHRGHPCCRHHWRPQGDGGSDLLQTGTIV 117316
Query: 122 MUT-ERGAXLHWLRAGSDDPSTETGGGTECCAFQSHUPLPXDAA 164
+ A L+ RA +D ET + FQSH +P DAA
Sbjct: 117315 FYSGHHWAELYGTRARCNDTGAET*SSIDSRTFQSHGSIPQDAA 117184
>gb|AC159455.1| Trypanosoma brucei chromosome 5 clone RPCI93-6E7, complete sequence
Length = 170328
Score = 39.3 bits (90), Expect = 0.45, Method: Composition-based stats.
Identities = 44/164 (26%), Positives = 59/164 (35%), Gaps = 1/164 (0%)
Frame = -2
Query: 2 AMHSYHVXGWSHRTPHTENIEHRDDEGQSHVRHGGRPPLHRICLPPHSRPEATGSLUPSE 61
+ H+ H W T E ++R R LH ICL A
Sbjct: 6776 SFHTRHAGQWCRCTTQCHTPEAHYRTIGQNIRWCQRSSLHWICL*TDKGSSAAAPERSCN 6597
Query: 62 VUSHRDUPHFCWRLRHAGPAAEGGNRGDYQVPXXXXXXXXXXXXQEGDGRGGVPPNRTHA 121
R P+ CW +R+A PA G R +VP +GDG + T
Sbjct: 6596 FRGCRI*PYICWCMRYA*PAT*GSARCYREVPHRGHPCCRHHWRPQGDGGSDLLQTGTIV 6417
Query: 122 MUT-ERGAXLHWLRAGSDDPSTETGGGTECCAFQSHUPLPXDAA 164
+ A L+ RA +D ET + FQSH +P DAA
Sbjct: 6416 FYSGHHWAELYGTRARCNDTGAET*SSIDSRTFQSHGSIPQDAA 6285
>gb|M73769.1|TRBPATPA T.brucei P-type ATPase gene, complete cds
Length = 4241
Score = 38.5 bits (88), Expect = 0.64, Method: Composition-based stats.
Identities = 44/164 (26%), Positives = 59/164 (35%), Gaps = 1/164 (0%)
Frame = +3
Query: 2 AMHSYHVXGWSHRTPHTENIEHRDDEGQSHVRHGGRPPLHRICLPPHSRPEATGSLUPSE 61
+ H+ H W T E ++R R LH ICL A
Sbjct: 1953 SFHTRHAGQWCRCTTQCHTPEAHYRTIGQNIRWCQRSSLHWICL*TDKGSSARAPERSCN 2132
Query: 62 VUSHRDUPHFCWRLRHAGPAAEGGNRGDYQVPXXXXXXXXXXXXQEGDGRGGVPPNRTHA 121
R P+ CW +R+A PA G R +VP +GDG + T
Sbjct: 2133 FRGCRI*PYICWCMRYA*PAT*GSARCYREVPHRGHPCCRHHWRPQGDGGSDLLQTGTIV 2312
Query: 122 MUT-ERGAXLHWLRAGSDDPSTETGGGTECCAFQSHUPLPXDAA 164
+ A L+ RA +D ET + FQSH +P DAA
Sbjct: 2313 FYSGHHWAELYGTRARCNDTGAET*SSIDSRTFQSHGSIPQDAA 2444
>ref|XM_001997475.1| Drosophila grimshawi GH24751 (Dgri\GH24751), mRNA
Length = 1527
Score = 35.4 bits (80), Expect = 5.8, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = -1
Query: 114 VPPNRTHAMUTERGAXLHWLRAGSDDPSTETGGGTEC 150
+P +RTH G +HWLR G DD ETG G C
Sbjct: 990 IPLSRTH-----DGIGIHWLRLGQDDAQRETGHGRNC 895
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.325 0.142 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 668981474
Number of extensions: 12166859
Number of successful extensions: 94147
Number of sequences better than 10: 10
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 94015
Number of HSP's successfully gapped: 12
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 15 (7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.0 bits)
S2: 78 (34.7 bits)
Query= gi|154331997|ref|NC_009297.1|:subseq(13842,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 4
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
ref|XM_001561641.1| Leishmania braziliensis MHOM/BR/75/M2904 cal... 340 1e-91
emb|AM494941.1| Leishmania braziliensis chromosome 4 340 1e-91
emb|AL389894.4|LMFLCHR4A Leishmania major Friedlin chromosome 4,... 294 8e-78
ref|XM_883419.1| Leishmania major strain Friedlin organelle-type... 294 8e-78
gb|AY791850.1| Leishmania donovani sarcoplasmic-endoplasmic reti... 293 1e-77
ref|XM_001462801.1| Leishmania infantum calcium-translocating P-... 291 5e-77
emb|AM502222.1| Leishmania infantum chromosome 4 287 9e-76
gb|U70540.1|LMU70540 Leishmania mexicana amazonensis organelle-t... 281 7e-74
ref|XM_809135.1| Trypanosoma cruzi strain CL Brener calcium-tran... 209 3e-52
gb|AF093566.1|AF093566 Trypanosoma cruzi SERCA-type calcium-ATPa... 207 1e-51
ref|XM_839917.1| Trypanosoma brucei TREU927 calcium-translocatin... 201 8e-50
gb|AC113585.4| Trypanosoma brucei chromosome 5 clone RPCI93-27M3... 201 8e-50
gb|AC159455.1| Trypanosoma brucei chromosome 5 clone RPCI93-6E7,... 201 8e-50
gb|M73769.1|TRBPATPA T.brucei P-type ATPase gene, complete cds 198 5e-49
ref|XM_002114999.1| Trichoplax adhaerens hypothetical protein, mRNA 155 3e-36
ref|XM_002005836.1| Drosophila mojavensis GI20714 (Dmoj\GI20714)... 153 2e-35
ref|XM_001987007.1| Drosophila grimshawi GH20185 (Dgri\GH20185),... 151 5e-35
ref|XM_001959403.1| Drosophila ananassae GF12053 (Dana\GF12053),... 151 8e-35
ref|XM_002049930.1| Drosophila virilis GJ21881 (Dvir\GJ21881), mRNA 150 1e-34
ref|XM_002063751.1| Drosophila willistoni GK15853 (Dwil\GK15853)... 150 1e-34
gb|DQ233466.1| Strongylocentrotus purpuratus sarco/endoplasmic r... 150 1e-34
gb|EF586867.1| Clonorchis sinensis Ca2+ transporting ATPase mRNA... 150 2e-34
gb|EF488287.1| Pinctada fucata sarco/endoplasmic reticulum calci... 148 6e-34
gb|EF488286.1| Pinctada fucata sarco/endoplasmic reticulum calci... 148 6e-34
gb|EF488285.1| Pinctada fucata sarco/endoplasmic reticulum calci... 148 6e-34
emb|AJ420746.1|BTR420746 Blakeslea trispora partial bca2 gene fo... 148 7e-34
ref|XM_002092679.1| Drosophila yakuba GE11511 (Dyak\GE11511), mRNA 147 8e-34
ref|XM_001976462.1| Drosophila erecta GG19978 (Dere\GG19978), mRNA 147 8e-34
ref|XM_002040141.1| Drosophila sechellia GM15491 (Dsec\GM15491),... 147 1e-33
ref|NM_166639.1| Drosophila melanogaster calcium ATPase at 60A (... 147 1e-33
ref|NM_166638.1| Drosophila melanogaster calcium ATPase at 60A (... 147 1e-33
ref|NM_166637.1| Drosophila melanogaster calcium ATPase at 60A (... 147 1e-33
ref|NM_166636.1| Drosophila melanogaster calcium ATPase at 60A (... 147 1e-33
ref|NM_166635.1| Drosophila melanogaster calcium ATPase at 60A (... 147 1e-33
ref|NM_166634.1| Drosophila melanogaster calcium ATPase at 60A (... 147 1e-33
ref|NM_166633.1| Drosophila melanogaster calcium ATPase at 60A (... 147 1e-33
ref|NM_057484.2| Drosophila melanogaster calcium ATPase at 60A (... 147 1e-33
gb|M62892.1|DROSERCA Drosophila melanogaster sarco/endoplasmic r... 147 1e-33
gb|AY058465.1| Drosophila melanogaster GH26644 full length cDNA 147 1e-33
ref|XM_002163083.1| PREDICTED: Hydra magnipapillata similar to p... 147 1e-33
gb|L40328.1|SCMSMA1CA Schistosoma mansoni Ca2+ transport ATPase ... 147 1e-33
ref|XM_001943094.1| PREDICTED: Acyrthosiphon pisum similar to ca... 147 2e-33
ref|XM_393851.3| PREDICTED: Apis mellifera similar to Calcium-tr... 147 2e-33
ref|XM_001360200.2| Drosophila pseudoobscura pseudoobscura GA176... 146 2e-33
ref|XM_002015602.1| Drosophila persimilis GL10916 (Dper\GL10916)... 146 2e-33
gb|AF022228.1|AF022228 Placopecten magellanicus sarco/endoplasmi... 146 2e-33
ref|XM_961690.2| PREDICTED: Tribolium castaneum similar to calci... 146 3e-33
ref|XM_001778408.1| Physcomitrella patens subsp. patens predicte... 145 4e-33
emb|X84681.1|DMCAATPAS D.melanogaster organellar-type Ca-ATPase ... 145 4e-33
gb|AF074400.1|AF074400 Schistosoma mansoni calcium ATPase 2 (SMA... 145 4e-33
dbj|AB002112.1| Patinopecten yessoensis mRNA for calcium-ATPase,... 145 5e-33
gb|AE013599.4| Drosophila melanogaster chromosome 2R, complete s... 145 5e-33
gb|AC099018.1| Drosophila melanogaster, chromosome 2R, region 60... 145 5e-33
gb|AC005267.1|AC005267 Drosophila melanogaster DNA sequence (P1s... 145 5e-33
dbj|AK281143.1| Gryllus bimaculatus mRNA, GBcontig28004 145 6e-33
ref|XM_001092550.1| PREDICTED: Macaca mulatta sarco/endoplasmic ... 145 6e-33
ref|XM_001896214.1| Brugia malayi Calcium-transporting ATPase sa... 144 7e-33
ref|XM_001092435.1| PREDICTED: Macaca mulatta sarco/endoplasmic ... 144 8e-33
dbj|AB125642.1| Ciona savignyi Cs-ATP2A1/2/3 mRNA for calcium-tr... 143 2e-32
dbj|AB462957.1| Synthetic construct DNA, clone: pF1KB3408, Homo ... 142 3e-32
gb|EU176809.1| Synthetic construct Homo sapiens clone IMAGE:1000... 142 3e-32
gb|DQ893317.2| Synthetic construct clone IMAGE:100005947; FLH196... 142 3e-32
ref|NM_174953.1| Homo sapiens ATPase, Ca++ transporting, ubiquit... 142 3e-32
ref|NM_174954.1| Homo sapiens ATPase, Ca++ transporting, ubiquit... 142 3e-32
ref|NM_174955.1| Homo sapiens ATPase, Ca++ transporting, ubiquit... 142 3e-32
ref|NM_174956.1| Homo sapiens ATPase, Ca++ transporting, ubiquit... 142 3e-32
ref|NM_174958.1| Homo sapiens ATPase, Ca++ transporting, ubiquit... 142 3e-32
ref|NM_174957.1| Homo sapiens ATPase, Ca++ transporting, ubiquit... 142 3e-32
ref|NM_005173.2| Homo sapiens ATPase, Ca++ transporting, ubiquit... 142 3e-32
gb|BC035729.1| Homo sapiens ATPase, Ca++ transporting, ubiquitou... 142 3e-32
dbj|AK292716.1| Homo sapiens cDNA FLJ77199 complete cds, highly ... 142 3e-32
emb|Z69881.1|HSSERCA3M H.sapiens mRNA for adenosine triphosphata... 142 3e-32
gb|AF115572.1|AF115572 Heliothis virescens sarco(endo)plasmic re... 142 3e-32
gb|AF068221.1|AF068221 Homo sapiens sarco-/endoplasmic reticulum... 142 4e-32
gb|AY702617.1| Panulirus argus SERCA (serca) mRNA, complete cds 142 4e-32
emb|AJ786643.1| Panulirus argus mRNA for SERCA Ca(2+)-ATPase pum... 142 4e-32
ref|XM_001639478.1| Nematostella vectensis predicted protein (NE... 141 5e-32
gb|AF068220.1|AF068220 Homo sapiens sarco-/endoplasmic reticulum... 141 8e-32
ref|XM_001688766.1| Anopheles gambiae str. PEST AGAP006186-PD (A... 140 1e-31
ref|XM_001688765.1| Anopheles gambiae str. PEST AGAP006186-PA (A... 140 1e-31
ref|XM_001688764.1| Anopheles gambiae str. PEST AGAP006186-PB (A... 140 1e-31
ref|XM_001688763.1| Anopheles gambiae str. PEST AGAP006186-PC (A... 140 1e-31
ref|XM_316251.4| Anopheles gambiae str. PEST AGAP006186-PE (AgaP... 140 1e-31
ref|XM_002122199.1| PREDICTED: Ciona intestinalis similar to cal... 140 1e-31
gb|AF025849.1|AF025849 Procambarus clarkii sarco/endoplasmic ret... 140 1e-31
ref|XM_002120188.1| PREDICTED: Ciona intestinalis similar to cal... 140 2e-31
ref|XM_002119881.1| PREDICTED: Ciona intestinalis similar to cal... 140 2e-31
dbj|AB098506.1| Halocynthia roretzi HrSERCA mRNA for sarco-endop... 139 2e-31
ref|XM_001652036.1| Aedes aegypti calcium-transporting ATPase sa... 139 2e-31
ref|XM_001652035.1| Aedes aegypti calcium-transporting ATPase sa... 139 2e-31
ref|XM_001652034.1| Aedes aegypti calcium-transporting ATPase sa... 139 2e-31
ref|XM_001603521.1| PREDICTED: Nasonia vitripennis similar to sa... 139 2e-31
ref|XM_001868153.1| Culex quinquefasciatus calcium-transporting ... 139 2e-31
emb|AJ310844.1|HVU310844 Hordeum vulgare partial CA5 gene for P-... 139 3e-31
gb|BC044063.1| Xenopus laevis Calcium ATPase at 60A, mRNA (cDNA ... 139 3e-31
ref|XM_001789529.1| PREDICTED: Bos taurus ATPase, Ca++ transport... 139 4e-31
ref|NM_001114154.1| Bos taurus ATPase, Ca++ transporting, ubiqui... 139 4e-31
gb|M26064.1|CHKATPCA Chicken Ca2+ ATPase, complete cds 139 4e-31
ref|XM_002127144.1| PREDICTED: Ciona intestinalis similar to cal... 139 4e-31
ref|NM_001129236.1| Caenorhabditis elegans SERCA (Sarco-Endoplas... 138 5e-31
ref|NM_066985.3| Caenorhabditis elegans SERCA (Sarco-Endoplasmic... 138 5e-31
gb|AY158663.1| Porcellio scaber smooth endoplasmic reticulum cal... 138 5e-31
ref|NM_066984.4| Caenorhabditis elegans SERCA (Sarco-Endoplasmic... 138 5e-31
emb|AJ012296.1|CEL012296 Caenorhabditis elegans mRNA for calcium... 138 5e-31
ref|XM_001665850.1| Caenorhabditis briggsae hypothetical protein... 138 5e-31
emb|AJ132388.1|ATH132388 Arabidopsis thaliana mRNA for Ca2+-ATPa... 137 8e-31
gb|AY737278.1| Danio rerio sarcoendoplasmic reticulum calcium AT... 137 8e-31
gb|BC085636.1| Danio rerio wu:cegs655, mRNA (cDNA clone MGC:9211... 137 8e-31
dbj|AB178533.1| Danio rerio atp2a1 mRNA for sarcoplasmic/endopla... 137 8e-31
gb|AF483025.1| Boltenia villosa calcium-transporting ATPase (ser... 137 9e-31
ref|XM_001502689.2| PREDICTED: Equus caballus similar to ATPase,... 137 1e-30
emb|Y18063.1|GGA18063 Gallus gallus mRNA for endoplasmic reticul... 137 1e-30
gb|AF025848.1|AF025848 Procambarus clarkii sarco/endoplasmic ret... 137 1e-30
ref|NM_001077533.1| Danio rerio ATPase, Ca++ transporting, cardi... 137 1e-30
gb|BC125955.1| Danio rerio ATPase, Ca++ transporting, cardiac mu... 137 1e-30
ref|XM_001744766.1| Monosiga brevicollis MX1 predicted protein M... 136 2e-30
emb|Z92807.1|CEK11D9 Caenorhabditis elegans Cosmid K11D9, comple... 136 2e-30
ref|XM_001868860.1| Culex quinquefasciatus calcium-transporting ... 136 2e-30
ref|XM_001369107.1| PREDICTED: Monodelphis domestica similar to ... 136 2e-30
ref|XM_001220797.1| Chaetomium globosum CBS 148.51 hypothetical ... 135 3e-30
gb|EU082212.1| Arabidopsis thaliana endomembrane calcium ATPase ... 135 4e-30
dbj|AK229199.1| Arabidopsis thaliana mRNA for putative calcium A... 135 4e-30
ref|NM_100887.2| Arabidopsis thaliana ECA3 (ENDOPLASMIC RETICULU... 135 4e-30
gb|AF117296.1|AF117296 Arabidopsis thaliana putative endoplasmic... 135 4e-30
emb|AJ311784.1|CNO311784 Cymodocea nodosa CCA4 gene for P-type A... 135 5e-30
emb|AJ298902.1|RCL298902 Rana clamitans mRNA for Ca2+-ATPase 1 (... 135 5e-30
emb|AJ298901.1|RSY298901 Rana sylvatica mRNA for Ca2+-ATPase (at... 135 6e-30
ref|XM_849463.1| PREDICTED: Canis familiaris similar to sarco/en... 135 6e-30
ref|XM_548558.2| PREDICTED: Canis familiaris similar to sarco/en... 135 6e-30
ref|XM_001363832.1| PREDICTED: Monodelphis domestica hypothetica... 134 9e-30
gb|AY068245.1| Schmidtea mediterranea clone H.85.3h(T3) unknown ... 134 1e-29
ref|NM_001030277.1| Danio rerio ATPase, Ca++ transporting, cardi... 134 1e-29
gb|EU943132.1| Zea mays clone 1566619 mRNA sequence 134 1e-29
gb|BC084962.1| Xenopus laevis hypothetical LOC495440, mRNA (cDNA... 134 1e-29
ref|XM_001878199.1| Laccaria bicolor S238N-H82 Ca-transporting A... 134 1e-29
gb|U49394.1|MMU49394 Mus musculus sarcoendoplasmic reticulum Ca2... 134 1e-29
gb|U49393.1|MMU49393 Mus musculus sarcoendoplasmic reticulum Ca2... 134 1e-29
gb|BC017639.1| Mus musculus ATPase, Ca++ transporting, ubiquitou... 134 1e-29
gb|BC026147.1| Mus musculus ATPase, Ca++ transporting, ubiquitou... 134 1e-29
dbj|AK089487.1| Mus musculus B6-derived CD11 +ve dendritic cells... 134 1e-29
dbj|AB458821.1| Molgula tectiformis SERCA mRNA for sarcoplasmic ... 133 1e-29
gb|BC096519.1| Xenopus tropicalis hypothetical protein mgc107776... 133 1e-29
dbj|AB458823.1| Molgula tectiformis SERCA mRNA for sarcoplasmic ... 133 2e-29
emb|BX537784.1|HSM805873 Homo sapiens mRNA; cDNA DKFZp779O2152 (... 133 2e-29
emb|BX647365.1|HSM807510 Homo sapiens mRNA; cDNA DKFZp779M0152 (... 133 2e-29
ref|XM_510905.2| PREDICTED: Pan troglodytes ATPase, Ca++ transpo... 133 2e-29
ref|XM_001142958.1| PREDICTED: Pan troglodytes ATPase, Ca++ tran... 133 2e-29
emb|BX647367.1|HSM807512 Homo sapiens mRNA; cDNA DKFZp779A1459 (... 133 2e-29
dbj|AK291314.1| Homo sapiens cDNA FLJ75328 complete cds, highly ... 133 2e-29
gb|BC148653.1| Synthetic construct Homo sapiens clone IMAGE:1000... 133 2e-29
dbj|AK128456.1| Homo sapiens cDNA FLJ46599 fis, clone THYMU30471... 133 2e-29
ref|NM_173201.2| Homo sapiens ATPase, Ca++ transporting, cardiac... 133 2e-29
ref|NM_004320.3| Homo sapiens ATPase, Ca++ transporting, cardiac... 133 2e-29
emb|BX647366.1|HSM807511 Homo sapiens mRNA; cDNA DKFZp779N0852 (... 133 2e-29
ref|XM_854843.1| PREDICTED: Canis familiaris similar to ATPase, ... 133 2e-29
gb|BC168245.1| Rattus norvegicus ATPase, Ca++ transporting, card... 133 2e-29
gb|M99223.1|RATCTA Rattus norvegicus calcium transporting ATPase... 133 2e-29
gb|AY081946.1| Mus musculus calcium-transporting ATPase (Atp2a1)... 133 2e-29
gb|BC036292.1| Mus musculus ATPase, Ca++ transporting, cardiac m... 133 2e-29
dbj|AK155904.1| Mus musculus B6-derived CD11 +ve dendritic cells... 133 2e-29
ref|XM_854707.1| PREDICTED: Canis familiaris similar to ATPase, ... 133 2e-29
ref|XM_855027.1| PREDICTED: Canis familiaris similar to ATPase, ... 133 2e-29
ref|XM_854994.1| PREDICTED: Canis familiaris similar to ATPase, ... 133 2e-29
ref|XM_536925.2| PREDICTED: Canis familiaris similar to ATPase, ... 133 2e-29
ref|XM_854810.1| PREDICTED: Canis familiaris similar to ATPase, ... 133 2e-29
ref|XM_844684.1| PREDICTED: Canis familiaris similar to ATPase, ... 133 2e-29
emb|X63009.1|RESERCA1 R.esculenta mRNA for SERCa1 fast sceletal ... 133 2e-29
emb|X72713.1|AFATPASE A.franciscana mRNA for Sarco/endoplasmic r... 132 2e-29
ref|XM_001334026.1| PREDICTED: Danio rerio similar to LOC495046 ... 132 3e-29
ref|XM_679135.2| PREDICTED: Danio rerio similar to LOC495046 pro... 132 3e-29
emb|Z11500.1|FCCA2ATPM Felis catus mRNA for sarcoplasmic reticul... 132 3e-29
gb|EU136187.1| Canis lupus familiaris cardiac calcium pump mRNA,... 132 3e-29
gb|U94345.1|CFU94345 Canis familiaris sarcoplasmic reticulum Ca2... 132 3e-29
ref|XM_612129.3| PREDICTED: Bos taurus ATPase, Ca++ transporting... 132 3e-29
gb|EF489483.1| Cavia porcellus SERCA3 (ATP2A3) mRNA, partial cds 132 4e-29
ref|XM_002233462.1| Branchiostoma floridae hypothetical protein ... 132 4e-29
gb|BC037354.1| Homo sapiens, Similar to ATPase, Ca++ transportin... 132 5e-29
ref|XM_854917.1| PREDICTED: Canis familiaris similar to ATPase, ... 132 5e-29
ref|XM_001502262.2| PREDICTED: Equus caballus similar to ATPase,... 132 5e-29
emb|X51674.1|ASCAATPAS Artemia RNA for Ca-ATPase of sarcoplasmic... 132 5e-29
gb|U65229.1|MNU65229 Makaira nigricans sarcoplasmic/endoplasmic ... 132 5e-29
emb|X15074.1|SSCATP2 Pig mRNA for endoplasmic-reticulum Ca(2+)-t... 132 5e-29
emb|X15073.1|SSCATP1 Pig mRNA for endoplasmic-reticulum Ca(2+)-t... 132 5e-29
gb|DQ812886.1| Silurus lanzhouensis sarcoendoplasmic reticulum c... 131 6e-29
gb|BC165245.1| Danio rerio ATPase, Ca++ transporting, cardiac mu... 131 6e-29
ref|NM_001110140.2| Mus musculus ATPase, Ca++ transporting, card... 131 6e-29
ref|NM_009722.3| Mus musculus ATPase, Ca++ transporting, cardiac... 131 6e-29
gb|BC054531.1| Mus musculus ATPase, Ca++ transporting, cardiac m... 131 6e-29
gb|BC054748.1| Mus musculus ATPase, Ca++ transporting, cardiac m... 131 6e-29
dbj|AK220538.1| Mus musculus mRNA for mKIAA4195 protein 131 6e-29
gb|BC045327.1| Danio rerio ATPase, Ca++ transporting, cardiac mu... 131 6e-29
emb|AJ223584.1|MUM223584 Mus musculus mRNA for sarco/endoplasmic... 131 6e-29
emb|AJ131821.1|MMU131821 Mus musculus mRNA for sarco/endoplasmic... 131 6e-29
ref|XM_692016.3| PREDICTED: Danio rerio similar to ATPase, Ca++ ... 131 6e-29
ref|XM_002192583.1| PREDICTED: Taeniopygia guttata hypothetical ... 131 6e-29
ref|XM_002192532.1| PREDICTED: Taeniopygia guttata hypothetical ... 131 6e-29
emb|BX649072.1|HSM809223 Homo sapiens mRNA; cDNA DKFZp779D1050 (... 131 6e-29
emb|BX648544.1|HSM808692 Homo sapiens mRNA; cDNA DKFZp779D1555 (... 131 7e-29
emb|BX537389.1|HSM805686 Homo sapiens mRNA; cDNA DKFZp779G2251 (... 131 7e-29
gb|AY650902.1| Arabidopsis thaliana ECA3 mRNA, complete cds 131 8e-29
ref|NM_001110823.1| Rattus norvegicus ATPase, Ca++ transporting,... 131 9e-29
ref|NM_001110139.2| Rattus norvegicus ATPase, Ca++ transporting,... 131 9e-29
ref|NM_017290.3| Rattus norvegicus ATPase, Ca++ transporting, ca... 131 9e-29
gb|AF043106.1|AF043106 Rattus norvegicus sarco/endoplasmic retic... 131 9e-29
emb|X15635.1|RNSR2CA Rat mRNA for sarcoplasmic reticulum 2+-Ca-A... 131 9e-29
gb|J04024.1|RATATPSRC Rat alternative brain Ca+2-ATPase mRNA, co... 131 9e-29
gb|J04023.1|RATATPSRB Rat stomach non-muscle Ca+2-ATPase mRNA, c... 131 9e-29
gb|J04022.1|RATATPSRA Rat brain Ca+2-ATPase mRNA, complete cds 131 9e-29
ref|XR_054375.1| PREDICTED: Taeniopygia guttata misc_RNA (LOC100... 130 1e-28
gb|M30581.1|RATSERCA3 Rat organellar Ca-2+ pump mRNA, complete cds 130 1e-28
ref|XM_002148896.1| Penicillium marneffei ATCC 18224 endoplasmic... 130 1e-28
gb|BC121413.1| Xenopus tropicalis ATPase, Ca++ transporting, ubi... 130 1e-28
gb|BC167326.1| Xenopus tropicalis ATPase, Ca++ transporting, ubi... 130 2e-28
gb|EU130921.1| Oryctolagus cuniculus SERCA1a mRNA, complete cds 130 2e-28
gb|M12898.1|RABATPAA Rabbit Ca2+ ATPase mRNA, complete cds 130 2e-28
ref|XM_001505413.1| PREDICTED: Ornithorhynchus anatinus similar ... 130 2e-28
emb|AM137441.1| Equus caballus mRNA for sarcoplasmic/endoplasmic... 130 2e-28
emb|BX647368.1|HSM807513 Homo sapiens mRNA; cDNA DKFZp779N0459 (... 130 2e-28
emb|CR733760.2|CNS0GSY7 Tetraodon nigroviridis full-length cDNA 129 2e-28
ref|XM_002082843.1| Drosophila simulans GD24994 (Dsim\GD24994), ... 90 2e-28
dbj|AB168545.1| Macaca fascicularis testis cDNA clone: QtsA-1291... 129 3e-28
emb|AJ310846.1|HVU310846 Hordeum vulgare partial CA7 gene for P-... 129 3e-28
ref|XR_012271.1| PREDICTED: Macaca mulatta similar to ATPase, Ca... 129 3e-28
gb|BC119938.1| Bos taurus ATPase, Ca++ transporting, cardiac mus... 129 4e-28
gb|AE017348.1| Cryptococcus neoformans var. neoformans JEC21 chr... 129 4e-28
ref|XM_381441.1| Gibberella zeae PH-1 hypothetical protein parti... 129 4e-28
ref|XM_001833696.1| Coprinopsis cinerea okayama7#130 hypothetica... 128 5e-28
gb|EU195061.1| Oryctolagus cuniculus SERCA2a isoform mRNA, compl... 128 5e-28
gb|J04703.1|RABACATP Rabbit smooth muscle sarco(endo)plasmic cal... 128 5e-28
gb|U65228.1|MNU65228 Makaira nigricans sarcoplasmic/endoplasmic ... 128 6e-28
emb|X52496.1|OCCAATP Rabbit mRNA for calcium ATPase 128 6e-28
emb|X02814.1|OCATPDR Rabbit mRNA for Ca2+-ATPase 128 6e-28
gb|BT026617.1| Gasterosteus aculeatus clone CEC24-B04 mRNA sequence 128 6e-28
ref|NM_001135765.1| Homo sapiens ATPase, Ca++ transporting, card... 128 7e-28
dbj|AK293877.1| Homo sapiens cDNA FLJ55676 complete cds, highly ... 128 7e-28
ref|NM_001681.3| Homo sapiens ATPase, Ca++ transporting, cardiac... 128 7e-28
ref|NM_170665.3| Homo sapiens ATPase, Ca++ transporting, cardiac... 128 7e-28
gb|BC035588.1| Homo sapiens ATPase, Ca++ transporting, cardiac m... 128 7e-28
gb|M23115.1|HUMHK2A Homo sapiens calcium-ATPase (HK2) mRNA, comp... 128 7e-28
gb|M23114.1|HUMHK1A Homo sapiens calcium-ATPase (HK1) mRNA, comp... 128 7e-28
ref|XM_509362.2| PREDICTED: Pan troglodytes ATPase, Ca++ transpo... 127 8e-28
ref|XM_001141715.1| PREDICTED: Pan troglodytes ATPase, Ca++ tran... 127 8e-28
ref|XM_001141455.1| PREDICTED: Pan troglodytes ATPase, Ca++ tran... 127 8e-28
gb|BC133185.1| Xenopus laevis ATP2A2 protein, mRNA (cDNA clone M... 127 1e-27
ref|XM_767278.1| Cryptococcus neoformans var. neoformans B-3501A... 127 1e-27
ref|XM_572412.1| Cryptococcus neoformans var. neoformans JEC21 c... 127 1e-27
ref|XM_001540282.1| Ajellomyces capsulatus NAm1 sarcoplasmic/end... 127 1e-27
ref|XM_001730367.1| Malassezia globosa CBS 7966 hypothetical pro... 127 1e-27
gb|AF096871.1|AF096871 Zea mays calcium ATPase (cap1) mRNA, comp... 126 2e-27
gb|M25267.1|RATCA2ATPA Rattus norvegicus (clone pHA6) Ca2+ Mg2+-... 126 2e-27
ref|XM_415130.2| PREDICTED: Gallus gallus ATPase, Ca++ transport... 126 2e-27
gb|M66385.1|CHKSERAB Chicken Ca2+-ATPase (SERCA2) mRNA, complete... 126 2e-27
emb|X93592.1|DBCA1 D.bioculata mRNA for CA1 protein 125 4e-27
ref|XM_362105.2| Magnaporthe grisea 70-15 conserved hypothetical... 125 5e-27
ref|XM_001700675.1| Chlamydomonas reinhardtii strain CC-503 cw92... 125 5e-27
ref|XM_001212077.1| Aspergillus terreus NIH2624 sarcoplasmic/end... 125 5e-27
ref|XM_001939035.1| Pyrenophora tritici-repentis Pt-1C-BFP hypot... 125 7e-27
ref|XM_753135.1| Ustilago maydis 521 hypothetical protein (UM020... 125 7e-27
emb|AM118122.1| Glomus diaphanum partial serca gene for P-type I... 124 8e-27
emb|AJ577087.1|UMA577087 Ustilago maydis eca1 gene for endoplasm... 124 8e-27
emb|AM118123.1| Glomus proliferum partial serca gene for P-type ... 124 8e-27
dbj|AK317322.1| Arabidopsis thaliana AT1G10130 mRNA, partial cds... 124 1e-26
gb|EF489482.1| Cavia porcellus SERCA2 (ATP2A2) mRNA, partial cds 123 2e-26
emb|AJ310845.1|HVU310845 Hordeum vulgare partial CA6 gene for P-... 123 2e-26
ref|XM_001912888.1| Podospora anserina DSM 980 hypothetical prot... 123 2e-26
emb|CU633438.1| Podospora anserina genomic DNA chromosome 1, sup... 123 2e-26
gb|BC098958.1| Xenopus laevis hypothetical LOC495046, mRNA (cDNA... 123 2e-26
ref|XM_001415571.1| Ostreococcus lucimarinus CCE9901 P-ATPase fa... 123 2e-26
gb|CP000581.1| Ostreococcus lucimarinus CCE9901 chromosome 1, co... 123 2e-26
ref|XM_959389.2| Neurospora crassa OR74A calcium-transporting A... 122 3e-26
ref|XM_854880.1| PREDICTED: Canis familiaris similar to ATPase, ... 122 3e-26
emb|AJ243517.1|NCR243517 Neurospora crassa partial nca-1 gene fo... 122 3e-26
emb|AM118121.1| Glomus intraradices partial serca gene for P-typ... 122 5e-26
ref|XM_001257790.1| Neosartorya fischeri NRRL 181 endoplasmic re... 121 8e-26
ref|XM_002320646.1| Populus trichocarpa endoplasmic reticulum [E... 121 9e-26
ref|XM_001819238.1| Aspergillus oryzae RIB40 hypothetical protei... 120 1e-25
dbj|AP007155.1| Aspergillus oryzae RIB40 genomic DNA, SC003 120 2e-25
ref|XM_745474.1| Aspergillus fumigatus Af293 endoplasmic reticul... 120 2e-25
ref|XM_001610039.1| Babesia bovis calcium ATPase SERCA-like, put... 120 2e-25
ref|XM_001553523.1| Botryotinia fuckeliana B05.10 hypothetical p... 120 2e-25
gb|AC197790.3| MACACA MULATTA BAC clone CH250-476J19 from chromo... 119 3e-25
gb|CP000879.1| Petrotoga mobilis SJ95, complete genome 119 5e-25
ref|XM_001272588.1| Aspergillus clavatus NRRL 1 endoplasmic reti... 118 6e-25
emb|CR730555.1|CNS0GQN4 Tetraodon nigroviridis full-length cDNA 118 6e-25
emb|Y15726.1|HSSERCA11 Homo sapiens SERCA3 gene, exons 11-14 117 8e-25
ref|XM_002302366.1| Populus trichocarpa endoplasmic reticulum [E... 117 9e-25
dbj|AK227268.1| Arabidopsis thaliana mRNA for ER-type Ca2+-pump ... 117 9e-25
gb|BC051779.1| Danio rerio ATPase, Ca++ transporting, cardiac mu... 117 1e-24
gb|AC005940.3|AC005940 Homo sapiens chromosome 17, clone hRPK.16... 117 1e-24
emb|AJ973120.1| Pythium aphanidermatum partial pyt1 gene for P-t... 117 1e-24
ref|XM_001765642.1| Physcomitrella patens subsp. patens predicte... 117 1e-24
ref|NM_100640.3| Arabidopsis thaliana calcium-transporting ATPas... 117 1e-24
gb|DQ989372.1| Arabidopsis thaliana clone ECA4-4 endomembrane Ca... 117 1e-24
ref|XM_001759600.1| Physcomitrella patens subsp. patens predicte... 117 2e-24
dbj|AB224574.1| Aspergillus oryzae cDNA, contig sequence: AoEST1422 117 2e-24
ref|XM_001586295.1| Sclerotinia sclerotiorum 1980 hypothetical p... 116 2e-24
ref|XM_002320177.1| Populus trichocarpa endoplasmic reticulum [E... 116 2e-24
gb|BT032073.1| Phytophthora capsici clone CBOT125-P04 mRNA sequence 116 2e-24
gb|DQ077152.1| Oryza sativa (indica cultivar-group) Ca2+-ATPase ... 115 3e-24
emb|AM920429.1| Penicillium chrysogenum Wisconsin 54-1255 comple... 115 4e-24
ref|NM_100655.3| Arabidopsis thaliana ECA1 (CALCIUM-TRANSPORTING... 115 4e-24
gb|U96455.1|ATU96455 Arabidopsis thaliana ER-type Ca2+-pumping A... 115 4e-24
gb|U93845.1|ATU93845 Arabidopsis thaliana ER-type calcium pump (... 115 4e-24
ref|XM_658255.1| Aspergillus nidulans FGSC A4 hypothetical prote... 115 4e-24
ref|XM_002330841.1| Populus trichocarpa endoplasmic reticulum [E... 115 4e-24
gb|AF117125.1|AF117125 Arabidopsis thaliana endoplasmic reticulu... 115 6e-24
ref|XM_001243421.1| Coccidioides immitis RS hypothetical protein... 114 1e-23
ref|XM_001399045.1| Aspergillus niger CBS 513.88 hypothetical pr... 114 1e-23
ref|NM_001056279.1| Oryza sativa (japonica cultivar-group) Os03g... 114 1e-23
dbj|AK070260.1| Oryza sativa Japonica Group cDNA clone:J023045A1... 114 1e-23
gb|AF050497.1|AF050497 Lycopersicon esculentum Ca2+-ATPase precu... 114 1e-23
emb|AM270411.1| Aspergillus niger contig An18c0190, complete genome 113 2e-23
ref|XM_001778903.1| Physcomitrella patens subsp. patens predicte... 113 2e-23
dbj|AP006502.2| Cyanidioschyzon merolae DNA, chromosome 20, comp... 112 5e-23
dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, comp... 111 7e-23
gb|AF050496.1|AF050496 Lycopersicon esculentum Ca2+-ATPase mRNA,... 111 7e-23
gb|AF050495.1|AF050495 Lycopersicon esculentum Ca2+-ATPase mRNA,... 111 7e-23
gb|AC171907.2| Capitella capitata clone JGIBGZA-5J2, complete se... 110 1e-22
gb|U96780.1|SEG_HSATP2A1S8 Human Ca2+ ATPase of fast-twitch skel... 110 1e-22
ref|XM_001765893.1| Physcomitrella patens subsp. patens predicte... 110 1e-22
emb|CU210938.6| Mouse DNA sequence from clone DN-418I23 on chrom... 110 1e-22
emb|AL670399.4| Mouse DNA sequence from clone RP23-263M10 on chr... 110 1e-22
gb|AY727534.1| Toxoplasma gondii calcium ATPase SERCA-like mRNA,... 110 1e-22
ref|XM_002314173.1| Populus trichocarpa endoplasmic reticulum [E... 110 1e-22
ref|XM_001720061.1| PREDICTED: Homo sapiens similar to Ca ATPase... 110 2e-22
gb|AC109460.3| Homo sapiens chromosome 16 clone RP11-264B17, com... 109 2e-22
gb|CP000568.1| Clostridium thermocellum ATCC 27405, complete genome 109 3e-22
emb|CR726411.2|CNS0GNG1 Tetraodon nigroviridis full-length cDNA 109 3e-22
gb|CP000939.1| Clostridium botulinum B1 str. Okra, complete genome 108 4e-22
gb|CP000728.1| Clostridium botulinum F str. Langeland, complete ... 108 4e-22
gb|CP000727.1| Clostridium botulinum A str. Hall, complete genome 108 4e-22
gb|CP000726.1| Clostridium botulinum A str. ATCC 19397, complete... 108 4e-22
emb|AM412317.1| Clostridium botulinum A str. ATCC 3502 complete ... 108 4e-22
ref|XM_002286854.1| Thalassiosira pseudonana CCMP1335 cation tra... 108 6e-22
emb|CR725132.2|CNS0GMGI Tetraodon nigroviridis full-length cDNA 107 1e-21
ref|XM_854774.1| PREDICTED: Canis familiaris similar to ATPase, ... 107 1e-21
gb|CP000962.1| Clostridium botulinum A3 str. Loch Maree, complet... 107 1e-21
dbj|AP009389.1| Pelotomaculum thermopropionicum SI DNA, complete... 105 4e-21
emb|CR734991.2|CNS0GTWE Tetraodon nigroviridis full-length cDNA 105 4e-21
ref|XM_002293993.1| Thalassiosira pseudonana CCMP1335 cation tra... 105 4e-21
gb|CP000099.1| Methanosarcina barkeri str. Fusaro, complete genome 105 4e-21
emb|BX950856.4| Zebrafish DNA sequence from clone DKEY-205L20 in... 105 5e-21
emb|BX088598.7| Zebrafish DNA sequence from clone CH211-197J3 in... 105 5e-21
emb|CR732667.1|CNS0GS9S Tetraodon nigroviridis full-length cDNA 100 6e-21
gb|DQ989373.1| Arabidopsis thaliana clone ECA2-3 endomembrane Ca... 105 6e-21
ref|NM_116317.2| Arabidopsis thaliana ECA2 (CALCIUM-TRANSPORTING... 105 6e-21
emb|AJ132387.1|ATH132387 Arabidopsis thaliana mRNA for Ca2+-ATPa... 105 6e-21
gb|AY810225.1| Schistosoma japonicum clone SJCHGC09624 unknown mRNA 104 8e-21
gb|DQ989374.1| Arabidopsis thaliana clone ECA2-9 endomembrane Ca... 104 9e-21
gb|AC125322.4| Mus musculus BAC clone RP23-407J24 from chromosom... 104 1e-20
dbj|AK134248.1| Mus musculus 13 days embryo forelimb cDNA, RIKEN... 104 1e-20
gb|CP000531.1| Polaromonas naphthalenivorans CJ2 plasmid pPNAP02... 103 1e-20
ref|XM_001417024.1| Ostreococcus lucimarinus CCE9901 P-ATPase fa... 103 1e-20
gb|CP000583.1| Ostreococcus lucimarinus CCE9901 chromosome 3, co... 103 1e-20
ref|XM_672242.1| Plasmodium berghei strain ANKA calcium-transpor... 103 2e-20
gb|CP000804.1| Roseiflexus castenholzii DSM 13941, complete genome 103 2e-20
gb|CP000686.1| Roseiflexus sp. RS-1, complete genome 103 2e-20
gb|CP000922.1| Anoxybacillus flavithermus WK1, complete genome 103 2e-20
emb|CR407563.8| Zebrafish DNA sequence from clone DKEY-252G21 in... 102 3e-20
emb|CU352809.1| Aphanomyces euteiches cDNA 102 3e-20
gb|CP000924.1| Thermoanaerobacter pseudethanolicus ATCC 33223, c... 102 3e-20
gb|CP000923.1| Thermoanaerobacter sp. X514, complete genome 102 3e-20
gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome 102 4e-20
emb|AM137440.3| Equus caballus atp2A2 gene for sarcoplasmic/endo... 102 4e-20
gb|AE005176.1| Lactococcus lactis subsp. lactis Il1403, complete... 102 4e-20
emb|AL161472.2|ATCHRIV2 Arabidopsis thaliana DNA chromosome 4, c... 102 4e-20
gb|AF013294.1|TM018A10 Arabidopsis thaliana BAC TM018A10 102 4e-20
ref|XM_001307933.1| Trichomonas vaginalis G3 E1-E2 ATPase family... 102 5e-20
emb|X71022.1|SSPMA1 Synechocystis sp. PMA1 gene for plasma membr... 102 6e-20
dbj|BA000022.2| Synechocystis sp. PCC 6803 DNA, complete genome 102 6e-20
emb|AM406671.1| Lactococcus lactis subsp. cremoris MG1363, compl... 101 7e-20
gb|CP000516.1| Marinobacter aquaeolei VT8 plasmid pMAQU02, compl... 101 8e-20
ref|NG_007097.2| Homo sapiens ATPase, Ca++ transporting, cardiac... 101 9e-20
gb|AC006088.1| Homo sapiens 12q24.1 PAC RP1-305I20 (Roswell Park... 101 9e-20
gb|AC144548.8| Homo sapiens 12 BAC RP11-478C19 (Roswell Park Can... 101 9e-20
gb|AY860426.1| Bos taurus BTA17 2121 genomic sequence contig con... 101 9e-20
gb|CP000425.1| Lactococcus lactis subsp. cremoris SK11, complete... 101 9e-20
gb|AE005672.3| Streptococcus pneumoniae TIGR4, complete genome 101 1e-19
gb|CP000557.1| Geobacillus thermodenitrificans NG80-2, complete ... 101 1e-19
gb|AE017194.1| Bacillus cereus ATCC 10987, complete genome 101 1e-19
gb|AE007317.1| Streptococcus pneumoniae R6, complete genome 100 1e-19
gb|CP000410.1| Streptococcus pneumoniae D39, complete genome 100 1e-19
emb|FM211187.1| Streptococcus pneumoniae ATCC 700669 complete ge... 100 1e-19
gb|CP001015.1| Streptococcus pneumoniae G54, complete genome 100 1e-19
gb|CP001033.1| Streptococcus pneumoniae CGSP14, complete genome 100 1e-19
gb|CP000936.1| Streptococcus pneumoniae Hungary19A-6, complete g... 100 1e-19
gb|AE016877.1| Bacillus cereus ATCC 14579, complete genome 100 1e-19
gb|CP001176.1| Bacillus cereus B4264, complete genome 100 1e-19
gb|CP000033.3| Lactobacillus acidophilus NCFM, complete genome 100 1e-19
dbj|BA000028.3| Oceanobacillus iheyensis HTE831 DNA, complete ge... 100 1e-19
gb|AC007583.2|F24B9 Arabidopsis thaliana chromosome 1 BAC F24B9 ... 100 1e-19
gb|AC104314.8| Rattus norvegicus BAC CH230-136I5 (Children's Ho... 100 1e-19
emb|CU019607.9| Mouse DNA sequence from clone bMQ-_160D14 on chr... 100 1e-19
gb|AC113285.9| Mus musculus chromosome 5, clone RP23-407I6, comp... 100 1e-19
emb|AJ131870.1|MMU131870 Mus musculus SERCA2 gene, alternative t... 100 1e-19
ref|XM_001115874.1| PREDICTED: Macaca mulatta similar to ATPase,... 100 2e-19
gb|AF116533.1|AF116533 Arabidopsis thaliana endoplasmic reticulu... 100 2e-19
gb|CP000812.1| Thermotoga lettingae TMO, complete genome 100 2e-19
ref|XM_759997.1| Theileria parva strain Muguga calcium-transport... 100 2e-19
gb|AE000666.1| Methanothermobacter thermautotrophicus str. Delta... 100 2e-19
ref|XM_002288248.1| Thalassiosira pseudonana CCMP1335 calcium tr... 100 2e-19
gb|AE008384.1| Methanosarcina mazei strain Goe1, complete genome 100 2e-19
emb|X55197.1|PYYEL6 P.yoelii YEL6 gene for ATPase 100 2e-19
gb|AE008691.1| Thermoanaerobacter tengcongensis MB4, complete ge... 100 2e-19
emb|AL844518.5| Zebrafish DNA sequence from clone DKEY-83D9 in l... 100 2e-19
ref|XM_721193.1| Plasmodium yoelii yoelii str. 17XNL calcium-tra... 100 3e-19
gb|CP000764.1| Bacillus cereus subsp. cytotoxis NVH 391-98, comp... 100 3e-19
gb|AE015927.1| Clostridium tetani E88, complete genome 99 3e-19
gb|CP000813.1| Bacillus pumilus SAFR-032, complete genome 99 3e-19
gb|CP000227.1| Bacillus cereus Q1, complete genome 99 3e-19
gb|CP001177.1| Bacillus cereus AH187, complete genome 99 3e-19
gb|BT004242.1| Arabidopsis thaliana clone RAFL15-22-H20 (R20661) 99 4e-19
gb|CP000485.1| Bacillus thuringiensis str. Al Hakam, complete ge... 99 4e-19
emb|CR936503.1| Lactobacillus sakei strain 23K complete genome 99 4e-19
gb|CP000001.1| Bacillus cereus E33L, complete genome 99 4e-19
emb|CR628337.1| Legionella pneumophila str. Lens complete genome 99 5e-19
gb|CP001186.1| Bacillus cereus G9842, complete genome 99 6e-19
dbj|BA000004.3| Bacillus halodurans C-125 DNA, complete genome 99 6e-19
dbj|AP008971.1| Finegoldia magna ATCC 29328 DNA, complete genome 99 6e-19
gb|AE017334.2| Bacillus anthracis str. 'Ames Ancestor', complete... 99 7e-19
gb|AE017225.1| Bacillus anthracis str. Sterne, complete genome 99 7e-19
gb|AE016879.1| Bacillus anthracis str. Ames, complete genome 99 7e-19
gb|AE017355.1| Bacillus thuringiensis serovar konkukian str. 97-... 98 7e-19
emb|AM180355.1| Clostridium difficile 630 complete genome 98 8e-19
gb|CP001287.1| Cyanothece sp. PCC 8801, complete genome 98 8e-19
gb|CP000679.1| Caldicellulosiruptor saccharolyticus DSM 8903, co... 98 1e-18
gb|DQ171938.1| Plasmodium chabaudi chabaudi calcium-dependent AT... 98 1e-18
gb|CP001283.1| Bacillus cereus AH820, complete genome 97 1e-18
gb|CP000885.1| Clostridium phytofermentans ISDg, complete genome 97 1e-18
dbj|AP009049.1| Clostridium kluyveri NBRC 12016 DNA, complete ge... 97 1e-18
gb|CP000673.1| Clostridium kluyveri DSM 555, complete genome 97 1e-18
gb|M96324.1|TOMATPACA Lycopersicon esculentum Ca2+-ATPase gene, ... 97 2e-18
ref|XM_736431.1| Plasmodium chabaudi chabaudi calcium-transporti... 97 2e-18
emb|CR628336.1| Legionella pneumophila str. Paris complete genome 97 2e-18
ref|XM_863468.1| PREDICTED: Canis familiaris similar to sarco/en... 97 2e-18
gb|CP000675.1| Legionella pneumophila str. Corby, complete genome 97 2e-18
emb|FM177140.1| Lactobacillus casei BL23 complete genome, strain... 97 2e-18
emb|AL935253.1| Lactobacillus plantarum strain WCFS1 complete ge... 97 2e-18
gb|CP001393.1| Anaerocellum thermophilum DSM 6725, complete genome 97 3e-18
gb|CP000416.1| Lactobacillus brevis ATCC 367, complete genome 96 3e-18
gb|CP000254.1| Methanospirillum hungatei JF-1, complete genome 96 3e-18
emb|AM427350.2| Vitis vinifera contig VV78X151521.14, whole geno... 96 3e-18
gb|CP000422.1| Pediococcus pentosaceus ATCC 25745, complete genome 96 4e-18
gb|CP000806.1| Cyanothece sp. ATCC 51142 circular chromosome, co... 96 4e-18
gb|CP000246.1| Clostridium perfringens ATCC 13124, complete genome 96 4e-18
ref|XM_001326691.1| Trichomonas vaginalis G3 sarcoplasmic-endopl... 96 4e-18
gb|U65066.1|TVU65066 Trichomonas vaginalis sarcoplasmic-endoplas... 96 4e-18
gb|CP000312.1| Clostridium perfringens SM101, complete genome 96 5e-18
gb|CP000002.3| Bacillus licheniformis ATCC 14580, complete genome 96 5e-18
gb|AE017333.1| Bacillus licheniformis DSM 13, complete genome 96 5e-18
dbj|BA000016.3| Clostridium perfringens str. 13 DNA, complete ge... 95 6e-18
gb|CP000494.1| Bradyrhizobium sp. BTAi1, complete genome 95 7e-18
gb|CP001145.1| Coprothermobacter proteolyticus DSM 5265, complet... 95 8e-18
gb|CP000411.1| Oenococcus oeni PSU-1, complete genome 95 8e-18
gb|CP000505.1| Thermofilum pendens Hrk 5, complete genome 95 1e-17
gb|CP000517.1| Lactobacillus helveticus DPC 4571, complete genome 94 1e-17
gb|CP000721.1| Clostridium beijerinckii NCIMB 8052, complete genome 94 1e-17
gb|CP001175.1| Listeria monocytogenes HCC23, complete genome 94 1e-17
ref|XM_002183173.1| Phaeodactylum tricornutum CCAP 1055/1 probab... 94 1e-17
gb|CP000252.1| Syntrophus aciditrophicus SB, complete genome 94 1e-17
gb|EF066650.1| Sinorhizobium meliloti strain SM11 plasmid pSmeSM... 94 1e-17
emb|AL591976.1| Listeria monocytogenes strain EGD, complete geno... 94 1e-17
gb|AE017262.2| Listeria monocytogenes str. 4b F2365, complete ge... 94 1e-17
emb|CT573071.1| Kuenenia stuttgartiensis genome fragment KUST_E ... 94 1e-17
emb|AL596166.1| Listeria innocua Clip11262 complete genome, segm... 94 1e-17
gb|EU795285.1| Uncultured bacterium OMZ60_10K18 genomic sequence 94 1e-17
dbj|AP009552.1| Microcystis aeruginosa NIES-843 DNA, complete ge... 94 1e-17
gb|CP001348.1| Clostridium cellulolyticum H10, complete genome 94 2e-17
gb|CP000510.1| Psychromonas ingrahamii 37, complete genome 94 2e-17
emb|Z99112.2|BSUB0009 Bacillus subtilis complete genome (section... 94 2e-17
emb|Y13937.1| Bacillus subtilis genomic DNA from the spoVM region 94 2e-17
gb|CP000423.1| Lactobacillus casei ATCC 334, complete genome 94 2e-17
gb|CP000782.1| Xanthobacter autotrophicus Py2 plasmid pXAUT01, c... 93 2e-17
gb|CP000382.1| Clostridium novyi NT, complete genome 93 2e-17
gb|CP001101.1| Chlorobium phaeobacteroides BS1, complete genome 93 3e-17
gb|CP000930.2| Heliobacterium modesticaldum Ice1, complete genome 93 3e-17
gb|CP001089.1| Geobacter lovleyi SZ, complete genome 93 3e-17
gb|CP000413.1| Lactobacillus gasseri ATCC 33323, complete genome 93 3e-17
gb|CP000514.1| Marinobacter aquaeolei VT8, complete genome 93 3e-17
emb|AM285307.1| Spiroplasma citri GII3-3X chromosome, contig Con... 93 3e-17
ref|XM_628572.1| Cryptosporidium parvum Iowa II cation-transport... 93 3e-17
gb|CP001291.1| Cyanothece sp. PCC 7424, complete genome 93 3e-17
gb|CP000903.1| Bacillus weihenstephanensis KBAB4, complete genome 93 4e-17
ref|XM_663465.1| Cryptosporidium hominis TU502 calcium-transport... 92 4e-17
gb|AY062252.1| Medicago truncatula type IIA calcium ATPase gene,... 92 4e-17
gb|CP000786.1| Leptospira biflexa serovar Patoc strain 'Patoc 1 ... 92 4e-17
gb|CP000777.1| Leptospira biflexa serovar Patoc strain 'Patoc 1 ... 92 4e-17
gb|CP000407.1| Streptococcus suis 05ZYH33, complete genome 92 4e-17
gb|CP000408.1| Streptococcus suis 98HAH33, complete genome 92 4e-17
ref|XM_001247231.1| Coccidioides immitis RS calcium-transporting... 92 4e-17
dbj|AB121052.1| Plasmodium falciparum serca gene for sarcoplasmi... 92 4e-17
gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, compl... 92 4e-17
gb|EF411018.1| Synthetic construct Bacillus anthracis clone FLH2... 92 4e-17
ref|XM_002257707.1| Plasmodium knowlesi strain H Sarcoplasmic an... 92 4e-17
emb|CU228154.1| Populus EST from severe drought-stressed leaves 92 5e-17
gb|CP000612.1| Desulfotomaculum reducens MI-1, complete genome 92 5e-17
gb|CP000478.1| Syntrophobacter fumaroxidans MPOB, complete genome 92 5e-17
gb|CP000119.1| Anabaena variabilis ATCC 29413 plasmid A, complet... 92 5e-17
gb|CP001048.1| Yersinia pseudotuberculosis PB1/+, complete genome 92 5e-17
gb|CP000950.1| Yersinia pseudotuberculosis YPIII, complete genome 92 5e-17
>ref|XM_001561641.1| Leishmania braziliensis MHOM/BR/75/M2904 calcium-translocating P-type
ATPase (LbrM04_V2.0030) partial mRNA
Length = 3078
Score = 340 bits (871), Expect = 1e-91, Method: Composition-based stats.
Identities = 166/166 (100%), Positives = 166/166 (100%)
Frame = +1
Query: 1 KRCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIPDPKQLDLSDPA 60
KRCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIPDPKQLDLSDPA
Sbjct: 1573 KRCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIPDPKQLDLSDPA 1752
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM
Sbjct: 1753 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 1932
Query: 121 PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLVN 166
PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLVN
Sbjct: 1933 PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLVN 2070
>emb|AM494941.1| Leishmania braziliensis chromosome 4
Length = 475968
Score = 340 bits (871), Expect = 1e-91, Method: Composition-based stats.
Identities = 166/166 (100%), Positives = 166/166 (100%)
Frame = +2
Query: 1 KRCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIPDPKQLDLSDPA 60
KRCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIPDPKQLDLSDPA
Sbjct: 13844 KRCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIPDPKQLDLSDPA 14023
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM
Sbjct: 14024 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 14203
Query: 121 PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLVN 166
PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLVN
Sbjct: 14204 PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLVN 14341
>emb|AL389894.4|LMFLCHR4A Leishmania major Friedlin chromosome 4, left end
Length = 225394
Score = 294 bits (752), Expect = 8e-78, Method: Composition-based stats.
Identities = 141/166 (84%), Positives = 153/166 (92%)
Frame = +1
Query: 1 KRCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIPDPKQLDLSDPA 60
KRCTRIM KDG I PLTPK+++TVT ++RMSG E+ALRCIAFAFRP+PDPKQLDLSDPA
Sbjct: 6208 KRCTRIMFKDGHISPLTPKMVNTVTANIDRMSGAEEALRCIAFAFRPLPDPKQLDLSDPA 6387
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
KFEAIE+DLTF+GVCGMLDPPRREV +AI KC TAGIRVIVITGDKKETAEAVCRRIGLM
Sbjct: 6388 KFEAIESDLTFIGVCGMLDPPRREVADAIAKCRTAGIRVIVITGDKKETAEAVCRRIGLM 6567
Query: 121 PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLVN 166
P EP GLSFTGYELDQMTPAQ+RAAV +AVLFSRTDPSHKMQLVN
Sbjct: 6568 PYEPTTGLSFTGYELDQMTPAQRRAAVSSAVLFSRTDPSHKMQLVN 6705
>ref|XM_883419.1| Leishmania major strain Friedlin organelle-type calcium ATPase
(LT.01) partial mRNA
Length = 3072
Score = 294 bits (752), Expect = 8e-78, Method: Composition-based stats.
Identities = 141/166 (84%), Positives = 153/166 (92%)
Frame = +1
Query: 1 KRCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIPDPKQLDLSDPA 60
KRCTRIM KDG I PLTPK+++TVT ++RMSG E+ALRCIAFAFRP+PDPKQLDLSDPA
Sbjct: 1573 KRCTRIMFKDGHISPLTPKMVNTVTANIDRMSGAEEALRCIAFAFRPLPDPKQLDLSDPA 1752
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
KFEAIE+DLTF+GVCGMLDPPRREV +AI KC TAGIRVIVITGDKKETAEAVCRRIGLM
Sbjct: 1753 KFEAIESDLTFIGVCGMLDPPRREVADAIAKCRTAGIRVIVITGDKKETAEAVCRRIGLM 1932
Query: 121 PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLVN 166
P EP GLSFTGYELDQMTPAQ+RAAV +AVLFSRTDPSHKMQLVN
Sbjct: 1933 PYEPTTGLSFTGYELDQMTPAQRRAAVSSAVLFSRTDPSHKMQLVN 2070
>gb|AY791850.1| Leishmania donovani sarcoplasmic-endoplasmic reticulum calcium ATPase
(serca) gene, complete cds
Length = 3763
Score = 293 bits (750), Expect = 1e-77, Method: Composition-based stats.
Identities = 141/166 (84%), Positives = 153/166 (92%)
Frame = +3
Query: 1 KRCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIPDPKQLDLSDPA 60
KRCTRIM KDG I PLTPK+++TVT ++RMSG E+ALRCIAFAFRPIPDPKQL+LSDPA
Sbjct: 1752 KRCTRIMFKDGHISPLTPKMVNTVTANIDRMSGTEEALRCIAFAFRPIPDPKQLNLSDPA 1931
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
KFEAIE+DLTFVGVCGMLDPPR EV +AI KC TAGIRVIVITGDKKETAEAVCRRIGLM
Sbjct: 1932 KFEAIESDLTFVGVCGMLDPPRGEVADAIAKCRTAGIRVIVITGDKKETAEAVCRRIGLM 2111
Query: 121 PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLVN 166
P EP +GLSFTGYELDQMTPAQ+RAAV +AVLFSRTDPSHKMQLVN
Sbjct: 2112 PYEPTKGLSFTGYELDQMTPAQRRAAVSSAVLFSRTDPSHKMQLVN 2249
>ref|XM_001462801.1| Leishmania infantum calcium-translocating P-type ATPase (LinJ04.0010)
partial mRNA
Length = 3069
Score = 291 bits (745), Expect = 5e-77, Method: Composition-based stats.
Identities = 141/166 (84%), Positives = 153/166 (92%)
Frame = +1
Query: 1 KRCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIPDPKQLDLSDPA 60
KRCTRIM KDG I PLTPK+++TVT ++RMSG E+ALRCIAFAFRPIPDPKQL+LSDPA
Sbjct: 1573 KRCTRIMFKDGHISPLTPKMVNTVTANIDRMSGTEEALRCIAFAFRPIPDPKQLNLSDPA 1752
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
KFEAIE+DLTFVGVCGMLDPPR EV +AI KC TAGIRVIVITGDKKETAEAVCRRIGLM
Sbjct: 1753 KFEAIESDLTFVGVCGMLDPPRGEVADAIAKCRTAGIRVIVITGDKKETAEAVCRRIGLM 1932
Query: 121 PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLVN 166
P EP +GLSFTGYELDQMTPAQ+RAAV +AVLFSRTDPSHKMQLVN
Sbjct: 1933 PYEPTKGLSFTGYELDQMTPAQRRAAVSSAVLFSRTDPSHKMQLVN 2070
>emb|AM502222.1| Leishmania infantum chromosome 4
Length = 481046
Score = 287 bits (734), Expect = 9e-76, Method: Composition-based stats.
Identities = 141/166 (84%), Positives = 153/166 (92%)
Frame = +3
Query: 1 KRCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIPDPKQLDLSDPA 60
KRCTRIM KDG I PLTPK+++TVT ++RMSG E+ALRCIAFAFRPIPDPKQL+LSDPA
Sbjct: 7827 KRCTRIMFKDGHISPLTPKMVNTVTANIDRMSGTEEALRCIAFAFRPIPDPKQLNLSDPA 8006
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
KFEAIE+DLTFVGVCGMLDPPR EV +AI KC TAGIRVIVITGDKKETAEAVCRRIGLM
Sbjct: 8007 KFEAIESDLTFVGVCGMLDPPRGEVADAIAKCRTAGIRVIVITGDKKETAEAVCRRIGLM 8186
Query: 121 PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLVN 166
P EP +GLSFTGYELDQMTPAQ+RAAV +AVLFSRTDPSHKMQLVN
Sbjct: 8187 PYEPTKGLSFTGYELDQMTPAQRRAAVSSAVLFSRTDPSHKMQLVN 8324
>gb|U70540.1|LMU70540 Leishmania mexicana amazonensis organelle-type Ca2+-ATPase gene,
complete cds
Length = 4156
Score = 281 bits (718), Expect = 7e-74, Method: Composition-based stats.
Identities = 137/166 (82%), Positives = 151/166 (90%)
Frame = +2
Query: 1 KRCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIPDPKQLDLSDPA 60
KRCTRIM KDGRI PLTPK+++TVT ++RMSG E+ALRCIAFAFRPIPDPKQLDLSDPA
Sbjct: 2123 KRCTRIMFKDGRISPLTPKMVNTVTANIDRMSGTEEALRCIAFAFRPIPDPKQLDLSDPA 2302
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
KFEAI++ LT+ GV G+LDPPRREV +AI KC TAGIRVIVITGDKKETAEAVCRRIGLM
Sbjct: 2303 KFEAIDSHLTWGGVFGILDPPRREVADAIAKCRTAGIRVIVITGDKKETAEAVCRRIGLM 2482
Query: 121 PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLVN 166
EP +GLSFTGYELDQMTPAQ+RAAV +AVLFSRTDPSHKMQLVN
Sbjct: 2483 SSEPTKGLSFTGYELDQMTPAQRRAAVSSAVLFSRTDPSHKMQLVN 2620
>ref|XM_809135.1| Trypanosoma cruzi strain CL Brener calcium-translocating P-type
ATPase partial mRNA
Length = 3021
Score = 209 bits (532), Expect = 3e-52, Method: Composition-based stats.
Identities = 101/165 (61%), Positives = 123/165 (74%)
Frame = +1
Query: 1 KRCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIPDPKQLDLSDPA 60
+R T +M DG ++PL + S + K++ MSG E ALRCI FAF+ ++L LSDP+
Sbjct: 1552 RRSTHVMQVDGVVIPLNDALRSRIIAKIDAMSGSEHALRCIGFAFKSTQPVRELKLSDPS 1731
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
FE IE+DLTFVG CGMLDPPR EV EAI C TAGIRV+VITGD+KETAEA+CR++GL+
Sbjct: 1732 TFEQIESDLTFVGACGMLDPPRAEVREAIDNCRTAGIRVVVITGDRKETAEAICRKLGLL 1911
Query: 121 PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
GLS+TG E D M PA+KR AV +AVLFSRTDPSHKMQLV
Sbjct: 1912 LKTETSGLSYTGAEFDAMNPAEKRKAVMSAVLFSRTDPSHKMQLV 2046
>gb|AF093566.1|AF093566 Trypanosoma cruzi SERCA-type calcium-ATPase, complete cds
Length = 3277
Score = 207 bits (526), Expect = 1e-51, Method: Composition-based stats.
Identities = 99/165 (60%), Positives = 124/165 (75%)
Frame = +2
Query: 1 KRCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIPDPKQLDLSDPA 60
+R T +M DG ++PL+ + S + +++ MSG E ALRCI FAF+ ++L LSDP+
Sbjct: 1772 RRSTHVMQVDGVVIPLSDALRSRIIAEIDAMSGSEHALRCIGFAFKSTQPVRELKLSDPS 1951
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
FE IE+DLTFVG CGMLDPPR EV EAI C TAGIRV+VITGD+KETAEA+CR++GL+
Sbjct: 1952 TFEQIESDLTFVGACGMLDPPRAEVREAIDNCRTAGIRVVVITGDRKETAEAICRKLGLL 2131
Query: 121 PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
GLS+TG E + M PA+KR AV +AVLFSRTDPSHKMQLV
Sbjct: 2132 LKTETSGLSYTGAEFEGMNPAEKRKAVMSAVLFSRTDPSHKMQLV 2266
>ref|XM_839917.1| Trypanosoma brucei TREU927 calcium-translocating P-type ATPase
partial mRNA
Length = 3036
Score = 201 bits (510), Expect = 8e-50, Method: Composition-based stats.
Identities = 99/166 (59%), Positives = 123/166 (74%), Gaps = 1/166 (0%)
Frame = +1
Query: 1 KRCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIPDPKQLDLSDPA 60
+R T +M +G +V L + +++++SG +ALRCI FAF+P +QL L+DPA
Sbjct: 1564 RRSTHVMQDNGAVVQLNATHRKRIIEQLDKISGGANALRCIGFAFKPTKAVQQLRLNDPA 1743
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
FE +E+DLTFVG CGMLDPPR EV +AI KC TAGIRV+VITGD+KETAEA+C ++GL+
Sbjct: 1744 TFEDVESDLTFVGACGMLDPPREEVRDAIVKCRTAGIRVVVITGDRKETAEAICCKLGLL 1923
Query: 121 PCEP-REGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
GLS+TG ELD MTPAQKR AV AVLFSRTDPSHKMQLV
Sbjct: 1924 SSTADTTGLSYTGQELDAMTPAQKREAVLTAVLFSRTDPSHKMQLV 2061
>gb|AC113585.4| Trypanosoma brucei chromosome 5 clone RPCI93-27M3, complete sequence
Length = 127380
Score = 201 bits (510), Expect = 8e-50, Method: Composition-based stats.
Identities = 99/166 (59%), Positives = 123/166 (74%), Gaps = 1/166 (0%)
Frame = -2
Query: 1 KRCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIPDPKQLDLSDPA 60
+R T +M +G +V L + +++++SG +ALRCI FAF+P +QL L+DPA
Sbjct: 117677 RRSTHVMQDNGAVVQLNATHRKRIIEQLDKISGGANALRCIGFAFKPTKAVQQLRLNDPA 117498
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
FE +E+DLTFVG CGMLDPPR EV +AI KC TAGIRV+VITGD+KETAEA+C ++GL+
Sbjct: 117497 TFEDVESDLTFVGACGMLDPPREEVRDAIVKCRTAGIRVVVITGDRKETAEAICCKLGLL 117318
Query: 121 PCEP-REGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
GLS+TG ELD MTPAQKR AV AVLFSRTDPSHKMQLV
Sbjct: 117317 SSTADTTGLSYTGQELDAMTPAQKREAVLTAVLFSRTDPSHKMQLV 117180
>gb|AC159455.1| Trypanosoma brucei chromosome 5 clone RPCI93-6E7, complete sequence
Length = 170328
Score = 201 bits (510), Expect = 8e-50, Method: Composition-based stats.
Identities = 99/166 (59%), Positives = 123/166 (74%), Gaps = 1/166 (0%)
Frame = -3
Query: 1 KRCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIPDPKQLDLSDPA 60
+R T +M +G +V L + +++++SG +ALRCI FAF+P +QL L+DPA
Sbjct: 6778 RRSTHVMQDNGAVVQLNATHRKRIIEQLDKISGGANALRCIGFAFKPTKAVQQLRLNDPA 6599
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
FE +E+DLTFVG CGMLDPPR EV +AI KC TAGIRV+VITGD+KETAEA+C ++GL+
Sbjct: 6598 TFEDVESDLTFVGACGMLDPPREEVRDAIVKCRTAGIRVVVITGDRKETAEAICCKLGLL 6419
Query: 121 PCEP-REGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
GLS+TG ELD MTPAQKR AV AVLFSRTDPSHKMQLV
Sbjct: 6418 SSTADTTGLSYTGQELDAMTPAQKREAVLTAVLFSRTDPSHKMQLV 6281
>gb|M73769.1|TRBPATPA T.brucei P-type ATPase gene, complete cds
Length = 4241
Score = 198 bits (503), Expect = 5e-49, Method: Composition-based stats.
Identities = 97/166 (58%), Positives = 123/166 (74%), Gaps = 1/166 (0%)
Frame = +1
Query: 1 KRCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIPDPKQLDLSDPA 60
+R T +M +G +V L+ + +++++SG +ALRCI FAF+P + + L+DPA
Sbjct: 1951 RRSTHVMQDNGAVVQLSATHRKRIIEQLDKISGGANALRCIGFAFKPTKAVQHVRLNDPA 2130
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
FE +E+DLTFVG CGMLDPPR EV +AI KC TAGIRV+VITGD+KETAEA+C ++GL+
Sbjct: 2131 TFEDVESDLTFVGACGMLDPPREEVRDAIVKCRTAGIRVVVITGDRKETAEAICCKLGLL 2310
Query: 121 PCEP-REGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
GLS+TG ELD MTPAQKR AV AVLFSRTDPSHKMQLV
Sbjct: 2311 SSTADTTGLSYTGQELDAMTPAQKREAVLTAVLFSRTDPSHKMQLV 2448
>ref|XM_002114999.1| Trichoplax adhaerens hypothetical protein, mRNA
Length = 2985
Score = 155 bits (393), Expect = 3e-36, Method: Composition-based stats.
Identities = 80/169 (47%), Positives = 108/169 (63%), Gaps = 5/169 (2%)
Frame = +1
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIP-DPKQLDLSDPA 60
RCT + D VP+T I + T+ D LRC+A A P DPK ++L DPA
Sbjct: 1582 RCTYVRLADQSKVPMTDSIREQIMTQTIEYGTGADTLRCLALATVDDPVDPKDMNLEDPA 1761
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
F E+++TFVGV GMLDPPR+EV AI +C+ AGI+VIVITGD K+TAEA+CR+IG+
Sbjct: 1762 NFSKYESNMTFVGVVGMLDPPRKEVYNAIQQCYRAGIKVIVITGDNKDTAEAICRKIGVF 1941
Query: 121 PCEPREG----LSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
EP E LS++G E D + P +++ A A LFSR +P+HK ++V
Sbjct: 1942 --EPDENTTGRLSYSGREYDLLPPEEQKQAALRARLFSRVEPTHKSKIV 2082
>ref|XM_002005836.1| Drosophila mojavensis GI20714 (Dmoj\GI20714), mRNA
Length = 3009
Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats.
Identities = 80/167 (47%), Positives = 106/167 (63%), Gaps = 2/167 (1%)
Frame = +1
Query: 1 KRCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIP-DPKQLDLSDP 59
+RCT + VPLT + + + + D LRC+A A P P ++DL D
Sbjct: 1567 ERCTHARVGTSK-VPLTSALKAKILNLTGQYGTGRDTLRCLALAVADSPMRPDEMDLGDS 1743
Query: 60 AKFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGL 119
KF E +LTFVGV GMLDPPR+EVT+AI +C AGIRVIVITGD K TAEA+CRRIG+
Sbjct: 1744 TKFYQYEVNLTFVGVVGMLDPPRKEVTDAIVRCRAAGIRVIVITGDNKATAEAICRRIGV 1923
Query: 120 MP-CEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E G S++G E D ++PA+++AAV + LFSR +P HK ++V
Sbjct: 1924 FTEDEDTTGKSYSGREFDDLSPAEQKAAVARSRLFSRVEPQHKSKIV 2064
>ref|XM_001987007.1| Drosophila grimshawi GH20185 (Dgri\GH20185), mRNA
Length = 3063
Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats.
Identities = 79/167 (47%), Positives = 106/167 (63%), Gaps = 2/167 (1%)
Frame = +1
Query: 1 KRCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIP-DPKQLDLSDP 59
+RCT + VPLT + S + + D LRC+A A P P+++DL D
Sbjct: 1567 ERCTHARVGTSK-VPLTSALKSKILALTGQYGTGRDTLRCLALAVADSPMRPEEMDLGDS 1743
Query: 60 AKFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGL 119
KF E +LTFVGV GMLDPPR+EV ++I +C AGIRVIVITGD K TAEA+CRRIG+
Sbjct: 1744 TKFYQYEVNLTFVGVVGMLDPPRKEVADSIIRCRAAGIRVIVITGDNKATAEAICRRIGV 1923
Query: 120 MP-CEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E G S++G E D ++PA+++AAV + LFSR +P HK ++V
Sbjct: 1924 FSEDEDTTGKSYSGREFDDLSPAEQKAAVARSRLFSRVEPQHKSKIV 2064
>ref|XM_001959403.1| Drosophila ananassae GF12053 (Dana\GF12053), mRNA
Length = 3009
Score = 151 bits (381), Expect = 8e-35, Method: Composition-based stats.
Identities = 79/167 (47%), Positives = 105/167 (62%), Gaps = 2/167 (1%)
Frame = +1
Query: 1 KRCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIP-DPKQLDLSDP 59
+RCT + VPLT + S + + D LRC+A A P P ++DL D
Sbjct: 1567 ERCTHARVGTSK-VPLTSALKSKILALTGQYGTGRDTLRCLALAVADSPMKPDEMDLGDS 1743
Query: 60 AKFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGL 119
KF E +LTFVGV GMLDPPR+EV ++I +C AGIRVIVITGD K TAEA+CRRIG+
Sbjct: 1744 TKFYQYEVNLTFVGVVGMLDPPRKEVFDSIVRCRAAGIRVIVITGDNKATAEAICRRIGV 1923
Query: 120 MP-CEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E G S++G E D ++PA+++AAV + LFSR +P HK ++V
Sbjct: 1924 FTEDEDTTGKSYSGREFDDLSPAEQKAAVARSRLFSRVEPQHKSKIV 2064
>ref|XM_002049930.1| Drosophila virilis GJ21881 (Dvir\GJ21881), mRNA
Length = 2964
Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats.
Identities = 78/164 (47%), Positives = 104/164 (63%), Gaps = 6/164 (3%)
Frame = +1
Query: 8 CKDGRI----VPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIP-DPKQLDLSDPAKF 62
C R+ VPLT + + + + D LRC+A A P P+++DL D KF
Sbjct: 1528 CSHARVGTSKVPLTSALKTKILNLTGQYGTGRDTLRCLALAVADSPIRPEEMDLGDSTKF 1707
Query: 63 EAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLMP- 121
E +LTFVGV GMLDPPR+EV +AI +C AGIRVIVITGD K TAEA+CRRIG+
Sbjct: 1708 YQYEVNLTFVGVVGMLDPPRKEVFDAIVRCRAAGIRVIVITGDNKATAEAICRRIGVFSE 1887
Query: 122 CEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E G S++G E D ++PA+++AAV + LFSR +P HK ++V
Sbjct: 1888 DEDTTGKSYSGREFDDLSPAEQKAAVARSRLFSRVEPQHKSKIV 2019
>ref|XM_002063751.1| Drosophila willistoni GK15853 (Dwil\GK15853), mRNA
Length = 3009
Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats.
Identities = 78/167 (46%), Positives = 106/167 (63%), Gaps = 2/167 (1%)
Frame = +1
Query: 1 KRCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIP-DPKQLDLSDP 59
+RCT + VPLT + + + + + D LRC+A A P P ++DL D
Sbjct: 1567 ERCTHARVGTSK-VPLTSALKAKILSLTGQYGTGRDTLRCLALAVADSPMKPDEMDLGDS 1743
Query: 60 AKFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGL 119
KF E +LTFVGV GMLDPPR+EV ++I +C AGIRVIVITGD K TAEA+CRRIG+
Sbjct: 1744 TKFYQYEVNLTFVGVVGMLDPPRKEVFDSIVRCRAAGIRVIVITGDNKATAEAICRRIGV 1923
Query: 120 MP-CEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E G S++G E D ++PA+++AAV + LFSR +P HK ++V
Sbjct: 1924 FTEDEDTTGKSYSGREFDDLSPAEQKAAVARSRLFSRVEPQHKSKIV 2064
>gb|DQ233466.1| Strongylocentrotus purpuratus sarco/endoplasmic reticulum calcium
transporting ATPase mRNA, complete cds
Length = 3282
Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats.
Identities = 77/167 (46%), Positives = 107/167 (64%), Gaps = 2/167 (1%)
Frame = +2
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIPDPKQ-LDLSDPA 60
RC + + VPLTP + + + K+ DALRC+ A P K+ +DL +
Sbjct: 1766 RCNSVRIGSTK-VPLTPSVKTQIIEKIQSYGTGRDALRCLGMATVDNPIKKEEMDLENSV 1942
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
F E+++TFVG MLDPPR EV +I +C AGIRVIVITGD K TAEA+CR+IG+
Sbjct: 1943 NFGKYESNMTFVGCVAMLDPPRAEVKSSIEECRLAGIRVIVITGDNKATAEAICRKIGVF 2122
Query: 121 -PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLVN 166
P E EGLS++G ELD ++PA+++AA + LFSR +PSHK ++V+
Sbjct: 2123 GPDESTEGLSYSGRELDDLSPAEQKAACLRSRLFSRVEPSHKSKIVD 2263
>gb|EF586867.1| Clonorchis sinensis Ca2+ transporting ATPase mRNA, partial cds
Length = 2114
Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats.
Identities = 81/166 (48%), Positives = 108/166 (65%), Gaps = 2/166 (1%)
Frame = +1
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIPDPKQL-DLSDPA 60
RCT++ +GR++ LTP++ + K+ + + LRC+A A R P L +L+DP
Sbjct: 106 RCTQVRTPNGRVL-LTPELKDEILRKLATYATGRETLRCLALASRDDPPVSSLFNLTDPT 282
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
F+ ET LT VGV GMLDPPR EV ++I C AGIRVIVITGD K TAEA+CRRIGL
Sbjct: 283 NFKEYETGLTLVGVVGMLDPPRCEVADSIRACANAGIRVIVITGDNKATAEAICRRIGLF 462
Query: 121 -PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E G +FTG E D ++ +KR AVR A LF+R +P+HK ++V
Sbjct: 463 GEKEDTRGKAFTGREFDMLSLTEKREAVRRAKLFARVEPAHKSEIV 600
>gb|EF488287.1| Pinctada fucata sarco/endoplasmic reticulum calcium ATPase isoform C
(SERCA) mRNA, complete cds, alternatively spliced
Length = 3450
Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats.
Identities = 79/166 (47%), Positives = 105/166 (63%), Gaps = 2/166 (1%)
Frame = +1
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIPDPKQ-LDLSDPA 60
RCT + + G VP+ P I + + D LRC+A A P ++ +DL D
Sbjct: 1789 RCTHVRVQ-GNKVPMLPAIKTEIMKHAKSYGTGRDTLRCLALATIDSPPSREDMDLEDSR 1965
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
KF ET++TFVGV GMLDPPR EV +I +C AGIRVIVITGD K TAEA+CRRIG+
Sbjct: 1966 KFIQYETNMTFVGVVGMLDPPRTEVFHSIKECRGAGIRVIVITGDNKATAEAICRRIGVF 2145
Query: 121 -PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E EGL+FTG E D ++ ++R+AV A LF+R +P+HK ++V
Sbjct: 2146 GENESTEGLAFTGREFDDLSTEEQRSAVMRARLFARVEPTHKSRIV 2283
>gb|EF488286.1| Pinctada fucata sarco/endoplasmic reticulum calcium ATPase isoform B
(SERCA) mRNA, complete cds, alternatively spliced
Length = 3953
Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats.
Identities = 79/166 (47%), Positives = 105/166 (63%), Gaps = 2/166 (1%)
Frame = +1
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIPDPKQ-LDLSDPA 60
RCT + + G VP+ P I + + D LRC+A A P ++ +DL D
Sbjct: 1789 RCTHVRVQ-GNKVPMLPAIKTEIMKHAKSYGTGRDTLRCLALATIDSPPSREDMDLEDSR 1965
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
KF ET++TFVGV GMLDPPR EV +I +C AGIRVIVITGD K TAEA+CRRIG+
Sbjct: 1966 KFIQYETNMTFVGVVGMLDPPRTEVFHSIKECRGAGIRVIVITGDNKATAEAICRRIGVF 2145
Query: 121 -PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E EGL+FTG E D ++ ++R+AV A LF+R +P+HK ++V
Sbjct: 2146 GENESTEGLAFTGREFDDLSTEEQRSAVMRARLFARVEPTHKSRIV 2283
>gb|EF488285.1| Pinctada fucata sarco/endoplasmic reticulum calcium ATPase isoform A
(SERCA) mRNA, complete cds, alternatively spliced
Length = 3568
Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats.
Identities = 79/166 (47%), Positives = 105/166 (63%), Gaps = 2/166 (1%)
Frame = +1
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIPDPKQ-LDLSDPA 60
RCT + + G VP+ P I + + D LRC+A A P ++ +DL D
Sbjct: 1789 RCTHVRVQ-GNKVPMLPAIKTEIMKHAKSYGTGRDTLRCLALATIDSPPSREDMDLEDSR 1965
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
KF ET++TFVGV GMLDPPR EV +I +C AGIRVIVITGD K TAEA+CRRIG+
Sbjct: 1966 KFIQYETNMTFVGVVGMLDPPRTEVFHSIKECRGAGIRVIVITGDNKATAEAICRRIGVF 2145
Query: 121 -PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E EGL+FTG E D ++ ++R+AV A LF+R +P+HK ++V
Sbjct: 2146 GENESTEGLAFTGREFDDLSTEEQRSAVMRARLFARVEPTHKSRIV 2283
>emb|AJ420746.1|BTR420746 Blakeslea trispora partial bca2 gene for putative calcium ATPase,
exon 1
Length = 1125
Score = 148 bits (373), Expect = 7e-34, Method: Composition-based stats.
Identities = 78/167 (46%), Positives = 107/167 (64%), Gaps = 2/167 (1%)
Frame = +1
Query: 2 RCTRIMCKDGRI-VPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIPDPKQLDLSDPA 60
RC+ + +G VP+T I + K+ G +LRCI A +P Q +L D
Sbjct: 487 RCSFVRLSEGAAPVPMTAAIREQLNIKILEY-GQGMSLRCIGLAKVENINPSQFNLRDQT 663
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
KF E+++TFVG+ GM+DPPR EV ++I KC TAGIRVIVITGD K TAE++CR+IG+
Sbjct: 664 KFAEYESNMTFVGLVGMMDPPRPEVADSIAKCKTAGIRVIVITGDNKNTAESICRQIGVF 843
Query: 121 PC-EPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLVN 166
E G S+TG E D +TP QK A++ A LF+RT+P+HK +LV+
Sbjct: 844 DADEDLTGKSYTGREFDDLTPQQKMEAIKRASLFARTEPAHKQELVD 984
>ref|XM_002092679.1| Drosophila yakuba GE11511 (Dyak\GE11511), mRNA
Length = 3009
Score = 147 bits (372), Expect = 8e-34, Method: Composition-based stats.
Identities = 77/167 (46%), Positives = 104/167 (62%), Gaps = 2/167 (1%)
Frame = +1
Query: 1 KRCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIP-DPKQLDLSDP 59
+RCT + VPLT + + + + D LRC+A A P P ++DL D
Sbjct: 1567 ERCTHARVGTSK-VPLTSALKAKILALTGQYGTGRDTLRCLALAVADSPMKPDEMDLGDS 1743
Query: 60 AKFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGL 119
KF E +LTFVGV GMLDPPR+EV ++I +C AGIRVIVITGD K TAEA+CRRIG+
Sbjct: 1744 TKFYQYEVNLTFVGVVGMLDPPRKEVFDSIVRCRAAGIRVIVITGDNKATAEAICRRIGV 1923
Query: 120 MP-CEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E G S++G E D ++P +++AAV + LFSR +P HK ++V
Sbjct: 1924 FSEDEDTTGKSYSGREFDDLSPTEQKAAVARSRLFSRVEPQHKSKIV 2064
>ref|XM_001976462.1| Drosophila erecta GG19978 (Dere\GG19978), mRNA
Length = 3009
Score = 147 bits (372), Expect = 8e-34, Method: Composition-based stats.
Identities = 77/167 (46%), Positives = 104/167 (62%), Gaps = 2/167 (1%)
Frame = +1
Query: 1 KRCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIP-DPKQLDLSDP 59
+RCT + VPLT + + + + D LRC+A A P P ++DL D
Sbjct: 1567 ERCTHARVGTSK-VPLTSALKAKILALTGQYGTGRDTLRCLALAVADSPMKPDEMDLGDS 1743
Query: 60 AKFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGL 119
KF E +LTFVGV GMLDPPR+EV ++I +C AGIRVIVITGD K TAEA+CRRIG+
Sbjct: 1744 TKFYQYEVNLTFVGVVGMLDPPRKEVFDSIVRCRAAGIRVIVITGDNKATAEAICRRIGV 1923
Query: 120 MP-CEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E G S++G E D ++P +++AAV + LFSR +P HK ++V
Sbjct: 1924 FSEDEDTTGKSYSGREFDDLSPTEQKAAVARSRLFSRVEPQHKSKIV 2064
>ref|XM_002040141.1| Drosophila sechellia GM15491 (Dsec\GM15491), mRNA
Length = 3009
Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats.
Identities = 77/167 (46%), Positives = 104/167 (62%), Gaps = 2/167 (1%)
Frame = +1
Query: 1 KRCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIP-DPKQLDLSDP 59
+RCT + VPLT + + + + D LRC+A A P P ++DL D
Sbjct: 1567 ERCTHARVGTTK-VPLTSALKAKILALTGQYGTGRDTLRCLALAVADSPMKPDEMDLGDS 1743
Query: 60 AKFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGL 119
KF E +LTFVGV GMLDPPR+EV ++I +C AGIRVIVITGD K TAEA+CRRIG+
Sbjct: 1744 TKFYQYEVNLTFVGVVGMLDPPRKEVFDSIVRCRAAGIRVIVITGDNKATAEAICRRIGV 1923
Query: 120 MP-CEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E G S++G E D ++P +++AAV + LFSR +P HK ++V
Sbjct: 1924 FAEDEDTTGKSYSGREFDDLSPTEQKAAVARSRLFSRVEPQHKSKIV 2064
>ref|NM_166639.1| Drosophila melanogaster calcium ATPase at 60A (Ca-P60A), transcript
variant H, mRNA
Length = 5133
Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats.
Identities = 77/167 (46%), Positives = 104/167 (62%), Gaps = 2/167 (1%)
Frame = +2
Query: 1 KRCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIP-DPKQLDLSDP 59
+RCT + VPLT + + + + D LRC+A A P P ++DL D
Sbjct: 1886 ERCTHARVGTTK-VPLTSALKAKILALTGQYGTGRDTLRCLALAVADSPMKPDEMDLGDS 2062
Query: 60 AKFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGL 119
KF E +LTFVGV GMLDPPR+EV ++I +C AGIRVIVITGD K TAEA+CRRIG+
Sbjct: 2063 TKFYQYEVNLTFVGVVGMLDPPRKEVFDSIVRCRAAGIRVIVITGDNKATAEAICRRIGV 2242
Query: 120 MP-CEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E G S++G E D ++P +++AAV + LFSR +P HK ++V
Sbjct: 2243 FAEDEDTTGKSYSGREFDDLSPTEQKAAVARSRLFSRVEPQHKSKIV 2383
>ref|NM_166638.1| Drosophila melanogaster calcium ATPase at 60A (Ca-P60A), transcript
variant G, mRNA
Length = 3268
Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats.
Identities = 77/167 (46%), Positives = 104/167 (62%), Gaps = 2/167 (1%)
Frame = +2
Query: 1 KRCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIP-DPKQLDLSDP 59
+RCT + VPLT + + + + D LRC+A A P P ++DL D
Sbjct: 1658 ERCTHARVGTTK-VPLTSALKAKILALTGQYGTGRDTLRCLALAVADSPMKPDEMDLGDS 1834
Query: 60 AKFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGL 119
KF E +LTFVGV GMLDPPR+EV ++I +C AGIRVIVITGD K TAEA+CRRIG+
Sbjct: 1835 TKFYQYEVNLTFVGVVGMLDPPRKEVFDSIVRCRAAGIRVIVITGDNKATAEAICRRIGV 2014
Query: 120 MP-CEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E G S++G E D ++P +++AAV + LFSR +P HK ++V
Sbjct: 2015 FAEDEDTTGKSYSGREFDDLSPTEQKAAVARSRLFSRVEPQHKSKIV 2155
>ref|NM_166637.1| Drosophila melanogaster calcium ATPase at 60A (Ca-P60A), transcript
variant F, mRNA
Length = 3929
Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats.
Identities = 77/167 (46%), Positives = 104/167 (62%), Gaps = 2/167 (1%)
Frame = +3
Query: 1 KRCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIP-DPKQLDLSDP 59
+RCT + VPLT + + + + D LRC+A A P P ++DL D
Sbjct: 2319 ERCTHARVGTTK-VPLTSALKAKILALTGQYGTGRDTLRCLALAVADSPMKPDEMDLGDS 2495
Query: 60 AKFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGL 119
KF E +LTFVGV GMLDPPR+EV ++I +C AGIRVIVITGD K TAEA+CRRIG+
Sbjct: 2496 TKFYQYEVNLTFVGVVGMLDPPRKEVFDSIVRCRAAGIRVIVITGDNKATAEAICRRIGV 2675
Query: 120 MP-CEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E G S++G E D ++P +++AAV + LFSR +P HK ++V
Sbjct: 2676 FAEDEDTTGKSYSGREFDDLSPTEQKAAVARSRLFSRVEPQHKSKIV 2816
>ref|NM_166636.1| Drosophila melanogaster calcium ATPase at 60A (Ca-P60A), transcript
variant E, mRNA
Length = 3324
Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats.
Identities = 77/167 (46%), Positives = 104/167 (62%), Gaps = 2/167 (1%)
Frame = +1
Query: 1 KRCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIP-DPKQLDLSDP 59
+RCT + VPLT + + + + D LRC+A A P P ++DL D
Sbjct: 1714 ERCTHARVGTTK-VPLTSALKAKILALTGQYGTGRDTLRCLALAVADSPMKPDEMDLGDS 1890
Query: 60 AKFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGL 119
KF E +LTFVGV GMLDPPR+EV ++I +C AGIRVIVITGD K TAEA+CRRIG+
Sbjct: 1891 TKFYQYEVNLTFVGVVGMLDPPRKEVFDSIVRCRAAGIRVIVITGDNKATAEAICRRIGV 2070
Query: 120 MP-CEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E G S++G E D ++P +++AAV + LFSR +P HK ++V
Sbjct: 2071 FAEDEDTTGKSYSGREFDDLSPTEQKAAVARSRLFSRVEPQHKSKIV 2211
>ref|NM_166635.1| Drosophila melanogaster calcium ATPase at 60A (Ca-P60A), transcript
variant D, mRNA
Length = 3275
Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats.
Identities = 77/167 (46%), Positives = 104/167 (62%), Gaps = 2/167 (1%)
Frame = +3
Query: 1 KRCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIP-DPKQLDLSDP 59
+RCT + VPLT + + + + D LRC+A A P P ++DL D
Sbjct: 1665 ERCTHARVGTTK-VPLTSALKAKILALTGQYGTGRDTLRCLALAVADSPMKPDEMDLGDS 1841
Query: 60 AKFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGL 119
KF E +LTFVGV GMLDPPR+EV ++I +C AGIRVIVITGD K TAEA+CRRIG+
Sbjct: 1842 TKFYQYEVNLTFVGVVGMLDPPRKEVFDSIVRCRAAGIRVIVITGDNKATAEAICRRIGV 2021
Query: 120 MP-CEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E G S++G E D ++P +++AAV + LFSR +P HK ++V
Sbjct: 2022 FAEDEDTTGKSYSGREFDDLSPTEQKAAVARSRLFSRVEPQHKSKIV 2162
>ref|NM_166634.1| Drosophila melanogaster calcium ATPase at 60A (Ca-P60A), transcript
variant C, mRNA
Length = 3496
Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats.
Identities = 77/167 (46%), Positives = 104/167 (62%), Gaps = 2/167 (1%)
Frame = +2
Query: 1 KRCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIP-DPKQLDLSDP 59
+RCT + VPLT + + + + D LRC+A A P P ++DL D
Sbjct: 1886 ERCTHARVGTTK-VPLTSALKAKILALTGQYGTGRDTLRCLALAVADSPMKPDEMDLGDS 2062
Query: 60 AKFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGL 119
KF E +LTFVGV GMLDPPR+EV ++I +C AGIRVIVITGD K TAEA+CRRIG+
Sbjct: 2063 TKFYQYEVNLTFVGVVGMLDPPRKEVFDSIVRCRAAGIRVIVITGDNKATAEAICRRIGV 2242
Query: 120 MP-CEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E G S++G E D ++P +++AAV + LFSR +P HK ++V
Sbjct: 2243 FAEDEDTTGKSYSGREFDDLSPTEQKAAVARSRLFSRVEPQHKSKIV 2383
>ref|NM_166633.1| Drosophila melanogaster calcium ATPase at 60A (Ca-P60A), transcript
variant B, mRNA
Length = 3382
Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats.
Identities = 77/167 (46%), Positives = 104/167 (62%), Gaps = 2/167 (1%)
Frame = +2
Query: 1 KRCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIP-DPKQLDLSDP 59
+RCT + VPLT + + + + D LRC+A A P P ++DL D
Sbjct: 1772 ERCTHARVGTTK-VPLTSALKAKILALTGQYGTGRDTLRCLALAVADSPMKPDEMDLGDS 1948
Query: 60 AKFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGL 119
KF E +LTFVGV GMLDPPR+EV ++I +C AGIRVIVITGD K TAEA+CRRIG+
Sbjct: 1949 TKFYQYEVNLTFVGVVGMLDPPRKEVFDSIVRCRAAGIRVIVITGDNKATAEAICRRIGV 2128
Query: 120 MP-CEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E G S++G E D ++P +++AAV + LFSR +P HK ++V
Sbjct: 2129 FAEDEDTTGKSYSGREFDDLSPTEQKAAVARSRLFSRVEPQHKSKIV 2269
>ref|NM_057484.2| Drosophila melanogaster calcium ATPase at 60A (Ca-P60A), transcript
variant A, mRNA
Length = 4084
Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats.
Identities = 77/167 (46%), Positives = 104/167 (62%), Gaps = 2/167 (1%)
Frame = +3
Query: 1 KRCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIP-DPKQLDLSDP 59
+RCT + VPLT + + + + D LRC+A A P P ++DL D
Sbjct: 2445 ERCTHARVGTTK-VPLTSALKAKILALTGQYGTGRDTLRCLALAVADSPMKPDEMDLGDS 2621
Query: 60 AKFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGL 119
KF E +LTFVGV GMLDPPR+EV ++I +C AGIRVIVITGD K TAEA+CRRIG+
Sbjct: 2622 TKFYQYEVNLTFVGVVGMLDPPRKEVFDSIVRCRAAGIRVIVITGDNKATAEAICRRIGV 2801
Query: 120 MP-CEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E G S++G E D ++P +++AAV + LFSR +P HK ++V
Sbjct: 2802 FAEDEDTTGKSYSGREFDDLSPTEQKAAVARSRLFSRVEPQHKSKIV 2942
>gb|M62892.1|DROSERCA Drosophila melanogaster sarco/endoplasmic reticulum-type Ca-2+-ATPase
mRNA, complete cds
Length = 3239
Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats.
Identities = 77/167 (46%), Positives = 104/167 (62%), Gaps = 2/167 (1%)
Frame = +3
Query: 1 KRCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIP-DPKQLDLSDP 59
+RCT + VPLT + + + + D LRC+A A P P ++DL D
Sbjct: 1599 ERCTHARVGTTK-VPLTSALKAKILALTGQYGTGRDTLRCLALAVADSPMKPDEMDLGDS 1775
Query: 60 AKFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGL 119
KF E +LTFVGV GMLDPPR+EV ++I +C AGIRVIVITGD K TAEA+CRRIG+
Sbjct: 1776 TKFYQYEVNLTFVGVVGMLDPPRKEVFDSIVRCRAAGIRVIVITGDNKATAEAICRRIGV 1955
Query: 120 MP-CEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E G S++G E D ++P +++AAV + LFSR +P HK ++V
Sbjct: 1956 FAEDEDTTGKSYSGREFDDLSPTEQKAAVARSRLFSRVEPQHKSKIV 2096
>gb|AY058465.1| Drosophila melanogaster GH26644 full length cDNA
Length = 3950
Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats.
Identities = 77/167 (46%), Positives = 104/167 (62%), Gaps = 2/167 (1%)
Frame = +3
Query: 1 KRCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIP-DPKQLDLSDP 59
+RCT + VPLT + + + + D LRC+A A P P ++DL D
Sbjct: 2319 ERCTHARVGTTK-VPLTSALKAKILALTGQYGTGRDTLRCLALAVADSPMKPDEMDLGDS 2495
Query: 60 AKFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGL 119
KF E +LTFVGV GMLDPPR+EV ++I +C AGIRVIVITGD K TAEA+CRRIG+
Sbjct: 2496 TKFYQYEVNLTFVGVVGMLDPPRKEVFDSIVRCRAAGIRVIVITGDNKATAEAICRRIGV 2675
Query: 120 MP-CEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E G S++G E D ++P +++AAV + LFSR +P HK ++V
Sbjct: 2676 FAEDEDTTGKSYSGREFDDLSPTEQKAAVARSRLFSRVEPQHKSKIV 2816
>ref|XM_002163083.1| PREDICTED: Hydra magnipapillata similar to predicted protein
(LOC100207814), mRNA
Length = 3268
Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats.
Identities = 77/169 (45%), Positives = 108/169 (63%), Gaps = 4/169 (2%)
Frame = +1
Query: 1 KRCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIPDP---KQLDLS 57
+RC + +I P+T ++ + +VN +D LRC+A A + DP ++DL+
Sbjct: 1609 ERCNFVRVGKDKI-PMTKQLREGILQQVNIYGTGKDTLRCLALA--TVDDPISKNEMDLT 1779
Query: 58 DPAKFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRI 117
D F E ++TFVGV GMLDPPR EV ++I +C+ AGIRVIVITGD K TAEA+CRRI
Sbjct: 1780 DSKNFIKYECNMTFVGVAGMLDPPRTEVRDSIKECYEAGIRVIVITGDNKNTAEAICRRI 1959
Query: 118 GLMP-CEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
G+ E G SF+G E D+++ ++R A RNA LFSR +PSHK ++
Sbjct: 1960 GVFSENESTNGKSFSGREFDELSEVEQREACRNARLFSRVEPSHKSAII 2106
>gb|L40328.1|SCMSMA1CA Schistosoma mansoni Ca2+ transport ATPase (SMA1) mRNA, complete cds
Length = 3069
Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 80/165 (48%), Positives = 103/165 (62%), Gaps = 1/165 (0%)
Frame = +1
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIPDPKQLDLSDPAK 61
RCT + G+++ LT ++ V K+ + + LRC+A A R P P DL DP
Sbjct: 1582 RCTYVRTAGGKLL-LTSELKGEVLRKIATYATGRETLRCLALATRDEP-PSHFDLKDPKN 1755
Query: 62 FEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLMP 121
F+ ET+LT VGV GM+DPPR EV +I C AGIRVIVITGD K TAEA+CRRIGL
Sbjct: 1756 FKDYETELTLVGVVGMVDPPRCEVASSIQACKKAGIRVIVITGDNKATAEAICRRIGLFE 1935
Query: 122 -CEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E G SFTG E D ++ +K+ AVRN LF+R +P+HK +V
Sbjct: 1936 DKEDTSGKSFTGREFDDLSLEKKKDAVRNGKLFARVEPAHKSLIV 2070
>ref|XM_001943094.1| PREDICTED: Acyrthosiphon pisum similar to calcium-transporting atpase
sarcoplasmic/endoplasmic reticulum type (calcium pump)
(LOC100167769), mRNA
Length = 3533
Score = 147 bits (370), Expect = 2e-33, Method: Composition-based stats.
Identities = 77/167 (46%), Positives = 107/167 (64%), Gaps = 2/167 (1%)
Frame = +2
Query: 1 KRCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIP-DPKQLDLSDP 59
+RCT + VPLT + + + + D LRC+A A P P+Q+DL+D
Sbjct: 1817 ERCTHARVGSQK-VPLTSALKNRILELTRKYGTGRDTLRCLALATSDSPTKPEQMDLNDS 1993
Query: 60 AKFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGL 119
KF E +LTFVGV GMLDPPR+EV ++I +C AGIRVIVITGD K TAEA+CRRIG+
Sbjct: 1994 NKFHTYEVNLTFVGVVGMLDPPRKEVFDSIQRCRAAGIRVIVITGDNKATAEAICRRIGV 2173
Query: 120 MPCEP-REGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E G S++G E D ++ +++++AV A LFSR +PSHK +++
Sbjct: 2174 FTEEEDTTGKSYSGREFDDLSLSEQKSAVAKARLFSRVEPSHKSKII 2314
>ref|XM_393851.3| PREDICTED: Apis mellifera similar to Calcium-transporting ATPase
sarcoplasmic/endoplasmic reticulum type (Calcium pump),
transcript variant 1 (LOC410371), mRNA
Length = 3677
Score = 147 bits (370), Expect = 2e-33, Method: Composition-based stats.
Identities = 77/166 (46%), Positives = 102/166 (61%), Gaps = 2/166 (1%)
Frame = +1
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIP-DPKQLDLSDPA 60
RCT + VPLT + + + + D LRC+A A P P +DL D
Sbjct: 1570 RCTHARVGSNK-VPLTSTLKNRILDLTRQYGTGRDTLRCLALATADHPMKPDDMDLDDST 1746
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
KF E DLTF+GV GMLDPPR+EV ++I +C AGIRVIVITGD K TAEA+CRRIG+
Sbjct: 1747 KFYTYEKDLTFIGVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVF 1926
Query: 121 -PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E G S++G E D + P++++AA A LFSR +P+HK ++V
Sbjct: 1927 GENEDTTGKSYSGREFDDLPPSEQKAACARARLFSRVEPAHKSKIV 2064
>ref|XM_001360200.2| Drosophila pseudoobscura pseudoobscura GA17643 (Dpse\GA17643), mRNA
Length = 3009
Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats.
Identities = 78/166 (46%), Positives = 103/166 (62%), Gaps = 2/166 (1%)
Frame = +1
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIP-DPKQLDLSDPA 60
RCT + VPLT + + + + D LRC+A A P P+ +DL D
Sbjct: 1570 RCTHARVGTSK-VPLTSALKAKILALTGQYGTGRDTLRCLALAVADSPIRPEDMDLGDST 1746
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
KF E +LTFVGV GMLDPPR+EV +AI +C AGIRVIVITGD K TAEA+CRRIG+
Sbjct: 1747 KFYQYEVNLTFVGVVGMLDPPRKEVFDAIVRCRAAGIRVIVITGDNKATAEAICRRIGVF 1926
Query: 121 PCEP-REGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E G S++G E D ++ A+++AAV + LFSR +P HK ++V
Sbjct: 1927 TEEEDTTGKSYSGREFDDLSIAEQKAAVARSRLFSRVEPQHKSKIV 2064
>ref|XM_002015602.1| Drosophila persimilis GL10916 (Dper\GL10916), mRNA
Length = 3009
Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats.
Identities = 78/166 (46%), Positives = 103/166 (62%), Gaps = 2/166 (1%)
Frame = +1
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIP-DPKQLDLSDPA 60
RCT + VPLT + + + + D LRC+A A P P+ +DL D
Sbjct: 1570 RCTHARVGTSK-VPLTSALKAKILALTGQYGTGRDTLRCLALAVADSPIRPEDMDLGDST 1746
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
KF E +LTFVGV GMLDPPR+EV +AI +C AGIRVIVITGD K TAEA+CRRIG+
Sbjct: 1747 KFYQYEVNLTFVGVVGMLDPPRKEVFDAIVRCRAAGIRVIVITGDNKATAEAICRRIGVF 1926
Query: 121 PCEP-REGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E G S++G E D ++ A+++AAV + LFSR +P HK ++V
Sbjct: 1927 TEEEDTTGKSYSGREFDDLSIAEQKAAVARSRLFSRVEPQHKSKIV 2064
>gb|AF022228.1|AF022228 Placopecten magellanicus sarco/endoplasmic reticulum-type
Ca-2+-ATPase mRNA, complete cds
Length = 3877
Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats.
Identities = 77/166 (46%), Positives = 105/166 (63%), Gaps = 2/166 (1%)
Frame = +1
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIPDPKQ-LDLSDPA 60
RCT + + VP++P I + + D LRC+A A P ++ +DL D
Sbjct: 1762 RCTHVRVGKDK-VPMSPAIKNEIMKYTKIYGTGRDTLRCLALATIDAPPRREDMDLEDAR 1938
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
KF ET++TFVGV GMLDPPR EV ++I C AGIRVIVITGD K TAEA+CRRIG+
Sbjct: 1939 KFIQYETNMTFVGVVGMLDPPRMEVFDSIKNCRKAGIRVIVITGDNKATAEAICRRIGVF 2118
Query: 121 -PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E EG+S+TG E D ++P ++R AV + LF+R +P+HK ++V
Sbjct: 2119 GENESTEGMSYTGREFDDLSPEEQRLAVMKSRLFARVEPAHKSKIV 2256
>ref|XM_961690.2| PREDICTED: Tribolium castaneum similar to calcium-transporting atpase
sarcoplasmic/endoplasmic reticulum type (calcium pump),
transcript variant 1 (LOC658328), mRNA
Length = 4422
Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats.
Identities = 79/167 (47%), Positives = 105/167 (62%), Gaps = 2/167 (1%)
Frame = +2
Query: 1 KRCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIP-DPKQLDLSDP 59
+RCT + VPLT + + + D LRC+A A P P+++DL D
Sbjct: 1934 ERCTHARVGTQK-VPLTNTLKNRILDLTKVYGTGRDTLRCLALATGDNPMKPEEMDLGDS 2110
Query: 60 AKFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGL 119
KF E +LTFVGV GMLDPPR+EV ++I +C AGIRVIVITGD K TAEA+CRRIG+
Sbjct: 2111 TKFYTYEVNLTFVGVVGMLDPPRKEVMDSIARCRAAGIRVIVITGDNKATAEAICRRIGV 2290
Query: 120 MP-CEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E G SF+G E D ++PA+++AA A LFSR +P+HK ++V
Sbjct: 2291 FTEDEDTTGKSFSGREFDDLSPAEQKAACAKARLFSRVEPAHKSKIV 2431
>ref|XM_001778408.1| Physcomitrella patens subsp. patens predicted protein
(PHYPADRAFT_222630) mRNA, complete cds
Length = 3600
Score = 145 bits (367), Expect = 4e-33, Method: Composition-based stats.
Identities = 77/167 (46%), Positives = 109/167 (65%), Gaps = 3/167 (1%)
Frame = +3
Query: 2 RCTRIMCKD-GRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIPDPKQ-LDLSDP 59
RCT ++C D G P+T +I + + ++ R ++ LRC+A A +P+P +Q L L+D
Sbjct: 1830 RCTSVLCNDDGAAAPMTAEIRAELEERLYRYP--KETLRCLALALKPMPMGQQSLTLAD- 2000
Query: 60 AKFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGL 119
E +LTFVG+ GM+DPPR EV AI C +AGIRVIV+TGD K TAE+VCRRIG+
Sbjct: 2001 ------ECNLTFVGLVGMMDPPRDEVRHAIATCKSAGIRVIVVTGDNKATAESVCRRIGV 2162
Query: 120 M-PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
P + G S+T E +++TP+Q+ A++ LFSR +PSHK LV
Sbjct: 2163 FDPLDDLTGKSYTATEFEELTPSQQAVAIQKLSLFSRVEPSHKSMLV 2303
>emb|X84681.1|DMCAATPAS D.melanogaster organellar-type Ca-ATPase gene
Length = 7132
Score = 145 bits (367), Expect = 4e-33, Method: Composition-based stats.
Identities = 77/167 (46%), Positives = 104/167 (62%), Gaps = 2/167 (1%)
Frame = +1
Query: 1 KRCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIP-DPKQLDLSDP 59
+RCT + VPLT + + + + D LRC+A A P P ++DL D
Sbjct: 2887 ERCTHARVGTTK-VPLTSALKAKILALTGQYGTGRDTLRCLALAVADSPMKPDEMDLGDS 3063
Query: 60 AKFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGL 119
KF E +LTFVGV GMLDPPR+EV ++I +C AGIRVIVITGD K TAEA+CRRIG+
Sbjct: 3064 TKFYQYEVNLTFVGVVGMLDPPRKEVFDSIVRCRAAGIRVIVITGDNKATAEAICRRIGV 3243
Query: 120 MP-CEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E G S++G E D ++P +++AAV + LFSR +P HK ++V
Sbjct: 3244 FAEDEDTTGKSYSGREFDDLSPTEQKAAVARSRLFSRVEPQHKSKIV 3384
>gb|AF074400.1|AF074400 Schistosoma mansoni calcium ATPase 2 (SMA2) mRNA, complete cds
Length = 4148
Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats.
Identities = 78/166 (46%), Positives = 103/166 (62%), Gaps = 2/166 (1%)
Frame = +1
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIP-DPKQLDLSDPA 60
RCT + + + VP+TP + + + V D LRC+A A P + Q+DL D
Sbjct: 1723 RCTFVRIGNKK-VPMTPPLKAEIVKHVASYGTGRDTLRCLALATCDAPVNKAQMDLEDST 1899
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
KF E +LTFVGV GMLDPPR EV ++I +C +GIRVI+ITGD K TAEA+CRRIG+
Sbjct: 1900 KFVKYEQNLTFVGVVGMLDPPRMEVFDSIARCRKSGIRVIMITGDNKATAEAICRRIGIF 2079
Query: 121 P-CEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
EP G SFTG E D + ++R A R A LF+R +P HK ++V
Sbjct: 2080 SEDEPTTGKSFTGREFDALPIEEQREACRRARLFARVEPMHKSKIV 2217
>dbj|AB002112.1| Patinopecten yessoensis mRNA for calcium-ATPase, complete cds
Length = 3883
Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats.
Identities = 77/166 (46%), Positives = 104/166 (62%), Gaps = 2/166 (1%)
Frame = +2
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIPDPKQ-LDLSDPA 60
RCT + + VP++P I + + D LRC+A A P ++ +DL D
Sbjct: 1739 RCTHVRVGKDK-VPMSPAIKNEILKYTKAYGTGRDTLRCLALATIDAPPRREDMDLEDSR 1915
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
KF ET++TFVGV GMLDPPR EV ++I C AGIRVIVITGD K TAEA+CRRIG+
Sbjct: 1916 KFIQYETNMTFVGVVGMLDPPRMEVFDSIKNCRKAGIRVIVITGDNKATAEAICRRIGVF 2095
Query: 121 -PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E EG+SFTG E D ++ ++R AV + LF+R +P+HK ++V
Sbjct: 2096 GENESTEGMSFTGREFDDLSHEEQRLAVTKSRLFARVEPAHKSKIV 2233
>gb|AE013599.4| Drosophila melanogaster chromosome 2R, complete sequence
Length = 21146708
Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats.
Identities = 77/167 (46%), Positives = 104/167 (62%), Gaps = 2/167 (1%)
Frame = -2
Query: 1 KRCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIP-DPKQLDLSDP 59
+RCT + VPLT + + + + D LRC+A A P P ++DL D
Sbjct: 19818505 ERCTHARVGTTK-VPLTSALKAKILALTGQYGTGRDTLRCLALAVADSPMKPDEMDLGDS 19818329
Query: 60 AKFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGL 119
KF E +LTFVGV GMLDPPR+EV ++I +C AGIRVIVITGD K TAEA+CRRIG+
Sbjct: 19818328 TKFYQYEVNLTFVGVVGMLDPPRKEVFDSIVRCRAAGIRVIVITGDNKATAEAICRRIGV 19818149
Query: 120 MP-CEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E G S++G E D ++P +++AAV + LFSR +P HK ++V
Sbjct: 19818148 FAEDEDTTGKSYSGREFDDLSPTEQKAAVARSRLFSRVEPQHKSKIV 19818008
Score = 53.1 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 42/175 (24%), Positives = 84/175 (48%), Gaps = 14/175 (8%)
Frame = -2
Query: 1 KRCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCI-AFAFRPIPDPKQLDLSDP 59
+RC+ +D + PL ++ + + + G+ +A R + AFA++ + D +
Sbjct: 18362836 RRCSTFAIRDEEL-PLDEQLQEIILSLAD---GLLEAGRHVRAFAYKELSDELEFRRFSQ 18362669
Query: 60 AK------------FEAIET-DLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDK 106
+ A++T L F+G+ +PPR + +A+ +C AGI++IV+T K
Sbjct: 18362668 VNTGLEGGEYKYRDYLAVDTYSLRFLGMIATYNPPRSTIPKAVDRCRAAGIKLIVVTQRK 18362489
Query: 107 KETAEAVCRRIGLMPCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHK 161
+ A+A+ +G++P P + +F L +M P A V + ++ P H+
Sbjct: 18362488 PKMAKALAVDVGILPA-PSD--TFQAVNLKRMPPT---AEVVDMSQYADEKPQHQ 18362342
>gb|AC099018.1| Drosophila melanogaster, chromosome 2R, region 60A-60B, BAC clone
BACR28M05, complete sequence
Length = 154840
Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats.
Identities = 77/167 (46%), Positives = 104/167 (62%), Gaps = 2/167 (1%)
Frame = -1
Query: 1 KRCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIP-DPKQLDLSDP 59
+RCT + VPLT + + + + D LRC+A A P P ++DL D
Sbjct: 22372 ERCTHARVGTTK-VPLTSALKAKILALTGQYGTGRDTLRCLALAVADSPMKPDEMDLGDS 22196
Query: 60 AKFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGL 119
KF E +LTFVGV GMLDPPR+EV ++I +C AGIRVIVITGD K TAEA+CRRIG+
Sbjct: 22195 TKFYQYEVNLTFVGVVGMLDPPRKEVFDSIVRCRAAGIRVIVITGDNKATAEAICRRIGV 22016
Query: 120 MP-CEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E G S++G E D ++P +++AAV + LFSR +P HK ++V
Sbjct: 22015 FAEDEDTTGKSYSGREFDDLSPTEQKAAVARSRLFSRVEPQHKSKIV 21875
>gb|AC005267.1|AC005267 Drosophila melanogaster DNA sequence (P1s DS03050 (D194) and DS06185
(D246)), complete sequence
Length = 98645
Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats.
Identities = 77/167 (46%), Positives = 104/167 (62%), Gaps = 2/167 (1%)
Frame = -3
Query: 1 KRCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIP-DPKQLDLSDP 59
+RCT + VPLT + + + + D LRC+A A P P ++DL D
Sbjct: 84369 ERCTHARVGTTK-VPLTSALKAKILALTGQYGTGRDTLRCLALAVADSPMKPDEMDLGDS 84193
Query: 60 AKFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGL 119
KF E +LTFVGV GMLDPPR+EV ++I +C AGIRVIVITGD K TAEA+CRRIG+
Sbjct: 84192 TKFYQYEVNLTFVGVVGMLDPPRKEVFDSIVRCRAAGIRVIVITGDNKATAEAICRRIGV 84013
Query: 120 MP-CEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E G S++G E D ++P +++AAV + LFSR +P HK ++V
Sbjct: 84012 FAEDEDTTGKSYSGREFDDLSPTEQKAAVARSRLFSRVEPQHKSKIV 83872
>dbj|AK281143.1| Gryllus bimaculatus mRNA, GBcontig28004
Length = 4063
Score = 145 bits (365), Expect = 6e-33, Method: Composition-based stats.
Identities = 77/167 (46%), Positives = 104/167 (62%), Gaps = 2/167 (1%)
Frame = -3
Query: 1 KRCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIP-DPKQLDLSDP 59
+RCT + VPLT + + + + D LRC+A A P P+++DL D
Sbjct: 2219 ERCTHARLGSQK-VPLTATLKNRILDLTRQYGTGRDTLRCLALATSDNPLKPEEMDLGDS 2043
Query: 60 AKFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGL 119
KF E +LTFVGV GMLDPPR+EV ++I +C AGIRVIVITGD K TAEA+CRRIG+
Sbjct: 2042 TKFYTYEVNLTFVGVVGMLDPPRKEVFDSIQRCRAAGIRVIVITGDNKSTAEAICRRIGV 1863
Query: 120 M-PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E G S++G E D + +++AAV A LFSR +P+HK ++V
Sbjct: 1862 FGEDEDTTGKSYSGREFDDLPAGEQKAAVARARLFSRVEPAHKSKIV 1722
>ref|XM_001092550.1| PREDICTED: Macaca mulatta sarco/endoplasmic reticulum Ca2+ -ATPase,
transcript variant 2 (ATP2A3), mRNA
Length = 4695
Score = 145 bits (365), Expect = 6e-33, Method: Composition-based stats.
Identities = 76/167 (45%), Positives = 103/167 (61%), Gaps = 2/167 (1%)
Frame = +1
Query: 1 KRCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIPDPKQ-LDLSDP 59
+RC+ + PLTP + K+ D LRC+A A R +P K+ ++L D
Sbjct: 1726 ERCSSVRV-GSHTAPLTPASREQILAKIRDWGSGSDTLRCLALATRDVPPRKEDMELDDC 1902
Query: 60 AKFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGL 119
+KF ETDLTFVG GMLDPPR EV IT+CH AGIRV++ITGD K TA A+CRR+G+
Sbjct: 1903 SKFVQYETDLTFVGCVGMLDPPRPEVAACITRCHQAGIRVVMITGDNKGTAVAICRRLGI 2082
Query: 120 M-PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E G ++TG E D ++P Q+R A R A F+R +P+HK ++V
Sbjct: 2083 FGDTEDVAGKAYTGREFDDLSPEQQRHACRTARCFARVEPAHKSRIV 2223
>ref|XM_001896214.1| Brugia malayi Calcium-transporting ATPase sarcoplasmic/endoplasmic
reticulum type partial mRNA
Length = 3228
Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats.
Identities = 77/166 (46%), Positives = 102/166 (61%), Gaps = 2/166 (1%)
Frame = +1
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFA-FRPIPDPKQLDLSDPA 60
RCT + +G+ +PLT KI + + D LRC+A PDP+ ++L D +
Sbjct: 1606 RCTHVRV-NGQRIPLTQKITQKIVDQCIHYGTGRDTLRCLALGTIDSPPDPRTMNLEDSS 1782
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
+F E D+TFVGV GMLDPPR EV +I +C AGIRVI+ITGD K TAEA+ RRIGL
Sbjct: 1783 QFILYEKDITFVGVVGMLDPPRAEVIPSIKECRMAGIRVIMITGDNKNTAEAIGRRIGLF 1962
Query: 121 P-CEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E G +FTG E D + P Q+ A R A LF+R +P+HK ++V
Sbjct: 1963 AEDEDSTGKAFTGREFDDLPPEQQSDACRRAKLFARVEPTHKSKIV 2100
>ref|XM_001092435.1| PREDICTED: Macaca mulatta sarco/endoplasmic reticulum Ca2+ -ATPase,
transcript variant 1 (ATP2A3), mRNA
Length = 3024
Score = 144 bits (364), Expect = 8e-33, Method: Composition-based stats.
Identities = 76/167 (45%), Positives = 103/167 (61%), Gaps = 2/167 (1%)
Frame = +1
Query: 1 KRCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIPDPKQ-LDLSDP 59
+RC+ + PLTP + K+ D LRC+A A R +P K+ ++L D
Sbjct: 1726 ERCSSVRV-GSHTAPLTPASREQILAKIRDWGSGSDTLRCLALATRDVPPRKEDMELDDC 1902
Query: 60 AKFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGL 119
+KF ETDLTFVG GMLDPPR EV IT+CH AGIRV++ITGD K TA A+CRR+G+
Sbjct: 1903 SKFVQYETDLTFVGCVGMLDPPRPEVAACITRCHQAGIRVVMITGDNKGTAVAICRRLGI 2082
Query: 120 M-PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E G ++TG E D ++P Q+R A R A F+R +P+HK ++V
Sbjct: 2083 FGDTEDVAGKAYTGREFDDLSPEQQRHACRTARCFARVEPAHKSRIV 2223
>dbj|AB125642.1| Ciona savignyi Cs-ATP2A1/2/3 mRNA for calcium-transpoting ATPase,
complete cds
Length = 3257
Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats.
Identities = 77/166 (46%), Positives = 101/166 (60%), Gaps = 2/166 (1%)
Frame = +1
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFA-FRPIPDPKQLDLSDPA 60
RCT + R VP+T +I + + V D LRC+A P P Q+DL D
Sbjct: 1600 RCTHVRVGKQR-VPMTAEIKQEIQSLVKEYGTGRDTLRCLALGTIDTPPSPSQMDLGDST 1776
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
KF ET +TFVG+ GMLDPPR EV +A+ C AGIRVIVITGD K TAEA+CRRIG+
Sbjct: 1777 KFLEYETGITFVGIVGMLDPPRLEVFQAVQDCRKAGIRVIVITGDNKATAEAICRRIGVF 1956
Query: 121 -PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E G++FTG E D ++ A++ A A LF+R +P+HK ++V
Sbjct: 1957 GEDEDTTGMAFTGREFDDLSVAEQAKACLRARLFARVEPAHKSKIV 2094
>dbj|AB462957.1| Synthetic construct DNA, clone: pF1KB3408, Homo sapiens ATP2A3 gene
for ATPase, Ca++ transporting, ubiquitous, without stop
codon, in Flexi system
Length = 3014
Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats.
Identities = 76/167 (45%), Positives = 103/167 (61%), Gaps = 2/167 (1%)
Frame = +1
Query: 1 KRCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIPDPKQ-LDLSDP 59
+RC+ + R PLTP + K+ D LRC+A A R P K+ ++L D
Sbjct: 1576 ERCSSVRV-GSRTAPLTPTSREQILAKIRDWGSGSDTLRCLALATRDAPPRKEDMELDDC 1752
Query: 60 AKFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGL 119
+KF ETDLTFVG GMLDPPR EV IT+C+ AGIRV++ITGD K TA A+CRR+G+
Sbjct: 1753 SKFVQYETDLTFVGCVGMLDPPRPEVAACITRCYQAGIRVVMITGDNKGTAVAICRRLGI 1932
Query: 120 M-PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E G ++TG E D ++P Q+R A R A F+R +P+HK ++V
Sbjct: 1933 FGDTEDVAGKAYTGREFDDLSPEQQRQACRTARCFARVEPAHKSRIV 2073
>gb|EU176809.1| Synthetic construct Homo sapiens clone IMAGE:100011557;
FLH196113.01L; RZPDo839D07256D ATPase, Ca++ transporting,
ubiquitous (ATP2A3) gene, encodes complete protein
Length = 3040
Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats.
Identities = 76/167 (45%), Positives = 103/167 (61%), Gaps = 2/167 (1%)
Frame = +2
Query: 1 KRCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIPDPKQ-LDLSDP 59
+RC+ + R PLTP + K+ D LRC+A A R P K+ ++L D
Sbjct: 1589 ERCSSVRV-GSRTAPLTPTSREQILAKIRDWGSGSDTLRCLALATRDAPPRKEDMELDDC 1765
Query: 60 AKFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGL 119
+KF ETDLTFVG GMLDPPR EV IT+C+ AGIRV++ITGD K TA A+CRR+G+
Sbjct: 1766 SKFVQYETDLTFVGCVGMLDPPRPEVAACITRCYQAGIRVVMITGDNKGTAVAICRRLGI 1945
Query: 120 M-PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E G ++TG E D ++P Q+R A R A F+R +P+HK ++V
Sbjct: 1946 FGDTEDVAGKAYTGREFDDLSPEQQRQACRTARCFARVEPAHKSRIV 2086
>gb|DQ893317.2| Synthetic construct clone IMAGE:100005947; FLH196114.01X;
RZPDo839D08154D ATPase, Ca++ transporting, ubiquitous
(ATP2A3) gene, encodes complete protein
Length = 3040
Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats.
Identities = 76/167 (45%), Positives = 103/167 (61%), Gaps = 2/167 (1%)
Frame = +2
Query: 1 KRCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIPDPKQ-LDLSDP 59
+RC+ + R PLTP + K+ D LRC+A A R P K+ ++L D
Sbjct: 1589 ERCSSVRV-GSRTAPLTPTSREQILAKIRDWGSGSDTLRCLALATRDAPPRKEDMELDDC 1765
Query: 60 AKFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGL 119
+KF ETDLTFVG GMLDPPR EV IT+C+ AGIRV++ITGD K TA A+CRR+G+
Sbjct: 1766 SKFVQYETDLTFVGCVGMLDPPRPEVAACITRCYQAGIRVVMITGDNKGTAVAICRRLGI 1945
Query: 120 M-PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E G ++TG E D ++P Q+R A R A F+R +P+HK ++V
Sbjct: 1946 FGDTEDVAGKAYTGREFDDLSPEQQRQACRTARCFARVEPAHKSRIV 2086
>ref|NM_174953.1| Homo sapiens ATPase, Ca++ transporting, ubiquitous (ATP2A3),
transcript variant 5, mRNA
Length = 4857
Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats.
Identities = 76/167 (45%), Positives = 103/167 (61%), Gaps = 2/167 (1%)
Frame = +2
Query: 1 KRCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIPDPKQ-LDLSDP 59
+RC+ + R PLTP + K+ D LRC+A A R P K+ ++L D
Sbjct: 1718 ERCSSVRV-GSRTAPLTPTSREQILAKIRDWGSGSDTLRCLALATRDAPPRKEDMELDDC 1894
Query: 60 AKFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGL 119
+KF ETDLTFVG GMLDPPR EV IT+C+ AGIRV++ITGD K TA A+CRR+G+
Sbjct: 1895 SKFVQYETDLTFVGCVGMLDPPRPEVAACITRCYQAGIRVVMITGDNKGTAVAICRRLGI 2074
Query: 120 M-PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E G ++TG E D ++P Q+R A R A F+R +P+HK ++V
Sbjct: 2075 FGDTEDVAGKAYTGREFDDLSPEQQRQACRTARCFARVEPAHKSRIV 2215
>ref|NM_174954.1| Homo sapiens ATPase, Ca++ transporting, ubiquitous (ATP2A3),
transcript variant 4, mRNA
Length = 4844
Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats.
Identities = 76/167 (45%), Positives = 103/167 (61%), Gaps = 2/167 (1%)
Frame = +2
Query: 1 KRCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIPDPKQ-LDLSDP 59
+RC+ + R PLTP + K+ D LRC+A A R P K+ ++L D
Sbjct: 1718 ERCSSVRV-GSRTAPLTPTSREQILAKIRDWGSGSDTLRCLALATRDAPPRKEDMELDDC 1894
Query: 60 AKFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGL 119
+KF ETDLTFVG GMLDPPR EV IT+C+ AGIRV++ITGD K TA A+CRR+G+
Sbjct: 1895 SKFVQYETDLTFVGCVGMLDPPRPEVAACITRCYQAGIRVVMITGDNKGTAVAICRRLGI 2074
Query: 120 M-PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E G ++TG E D ++P Q+R A R A F+R +P+HK ++V
Sbjct: 2075 FGDTEDVAGKAYTGREFDDLSPEQQRQACRTARCFARVEPAHKSRIV 2215
>ref|NM_174955.1| Homo sapiens ATPase, Ca++ transporting, ubiquitous (ATP2A3),
transcript variant 2, mRNA
Length = 4786
Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats.
Identities = 76/167 (45%), Positives = 103/167 (61%), Gaps = 2/167 (1%)
Frame = +2
Query: 1 KRCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIPDPKQ-LDLSDP 59
+RC+ + R PLTP + K+ D LRC+A A R P K+ ++L D
Sbjct: 1718 ERCSSVRV-GSRTAPLTPTSREQILAKIRDWGSGSDTLRCLALATRDAPPRKEDMELDDC 1894
Query: 60 AKFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGL 119
+KF ETDLTFVG GMLDPPR EV IT+C+ AGIRV++ITGD K TA A+CRR+G+
Sbjct: 1895 SKFVQYETDLTFVGCVGMLDPPRPEVAACITRCYQAGIRVVMITGDNKGTAVAICRRLGI 2074
Query: 120 M-PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E G ++TG E D ++P Q+R A R A F+R +P+HK ++V
Sbjct: 2075 FGDTEDVAGKAYTGREFDDLSPEQQRQACRTARCFARVEPAHKSRIV 2215
>ref|NM_174956.1| Homo sapiens ATPase, Ca++ transporting, ubiquitous (ATP2A3),
transcript variant 3, mRNA
Length = 4799
Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats.
Identities = 76/167 (45%), Positives = 103/167 (61%), Gaps = 2/167 (1%)
Frame = +2
Query: 1 KRCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIPDPKQ-LDLSDP 59
+RC+ + R PLTP + K+ D LRC+A A R P K+ ++L D
Sbjct: 1718 ERCSSVRV-GSRTAPLTPTSREQILAKIRDWGSGSDTLRCLALATRDAPPRKEDMELDDC 1894
Query: 60 AKFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGL 119
+KF ETDLTFVG GMLDPPR EV IT+C+ AGIRV++ITGD K TA A+CRR+G+
Sbjct: 1895 SKFVQYETDLTFVGCVGMLDPPRPEVAACITRCYQAGIRVVMITGDNKGTAVAICRRLGI 2074
Query: 120 M-PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E G ++TG E D ++P Q+R A R A F+R +P+HK ++V
Sbjct: 2075 FGDTEDVAGKAYTGREFDDLSPEQQRQACRTARCFARVEPAHKSRIV 2215
>ref|NM_174958.1| Homo sapiens ATPase, Ca++ transporting, ubiquitous (ATP2A3),
transcript variant 7, mRNA
Length = 4205
Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats.
Identities = 76/167 (45%), Positives = 103/167 (61%), Gaps = 2/167 (1%)
Frame = +2
Query: 1 KRCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIPDPKQ-LDLSDP 59
+RC+ + R PLTP + K+ D LRC+A A R P K+ ++L D
Sbjct: 1718 ERCSSVRV-GSRTAPLTPTSREQILAKIRDWGSGSDTLRCLALATRDAPPRKEDMELDDC 1894
Query: 60 AKFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGL 119
+KF ETDLTFVG GMLDPPR EV IT+C+ AGIRV++ITGD K TA A+CRR+G+
Sbjct: 1895 SKFVQYETDLTFVGCVGMLDPPRPEVAACITRCYQAGIRVVMITGDNKGTAVAICRRLGI 2074
Query: 120 M-PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E G ++TG E D ++P Q+R A R A F+R +P+HK ++V
Sbjct: 2075 FGDTEDVAGKAYTGREFDDLSPEQQRQACRTARCFARVEPAHKSRIV 2215
>ref|NM_174957.1| Homo sapiens ATPase, Ca++ transporting, ubiquitous (ATP2A3),
transcript variant 6, mRNA
Length = 4695
Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats.
Identities = 76/167 (45%), Positives = 103/167 (61%), Gaps = 2/167 (1%)
Frame = +2
Query: 1 KRCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIPDPKQ-LDLSDP 59
+RC+ + R PLTP + K+ D LRC+A A R P K+ ++L D
Sbjct: 1718 ERCSSVRV-GSRTAPLTPTSREQILAKIRDWGSGSDTLRCLALATRDAPPRKEDMELDDC 1894
Query: 60 AKFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGL 119
+KF ETDLTFVG GMLDPPR EV IT+C+ AGIRV++ITGD K TA A+CRR+G+
Sbjct: 1895 SKFVQYETDLTFVGCVGMLDPPRPEVAACITRCYQAGIRVVMITGDNKGTAVAICRRLGI 2074
Query: 120 M-PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E G ++TG E D ++P Q+R A R A F+R +P+HK ++V
Sbjct: 2075 FGDTEDVAGKAYTGREFDDLSPEQQRQACRTARCFARVEPAHKSRIV 2215
>ref|NM_005173.2| Homo sapiens ATPase, Ca++ transporting, ubiquitous (ATP2A3),
transcript variant 1, mRNA
Length = 4698
Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats.
Identities = 76/167 (45%), Positives = 103/167 (61%), Gaps = 2/167 (1%)
Frame = +2
Query: 1 KRCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIPDPKQ-LDLSDP 59
+RC+ + R PLTP + K+ D LRC+A A R P K+ ++L D
Sbjct: 1718 ERCSSVRV-GSRTAPLTPTSREQILAKIRDWGSGSDTLRCLALATRDAPPRKEDMELDDC 1894
Query: 60 AKFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGL 119
+KF ETDLTFVG GMLDPPR EV IT+C+ AGIRV++ITGD K TA A+CRR+G+
Sbjct: 1895 SKFVQYETDLTFVGCVGMLDPPRPEVAACITRCYQAGIRVVMITGDNKGTAVAICRRLGI 2074
Query: 120 M-PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E G ++TG E D ++P Q+R A R A F+R +P+HK ++V
Sbjct: 2075 FGDTEDVAGKAYTGREFDDLSPEQQRQACRTARCFARVEPAHKSRIV 2215
>gb|BC035729.1| Homo sapiens ATPase, Ca++ transporting, ubiquitous, mRNA (cDNA clone
MGC:46161 IMAGE:5723849), complete cds
Length = 4036
Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats.
Identities = 76/167 (45%), Positives = 103/167 (61%), Gaps = 2/167 (1%)
Frame = +3
Query: 1 KRCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIPDPKQ-LDLSDP 59
+RC+ + R PLTP + K+ D LRC+A A R P K+ ++L D
Sbjct: 1695 ERCSSVRV-GSRTAPLTPTSREQILAKIRDWGSGSDTLRCLALATRDAPPRKEDMELDDC 1871
Query: 60 AKFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGL 119
+KF ETDLTFVG GMLDPPR EV IT+C+ AGIRV++ITGD K TA A+CRR+G+
Sbjct: 1872 SKFVQYETDLTFVGCVGMLDPPRPEVAACITRCYQAGIRVVMITGDNKGTAVAICRRLGI 2051
Query: 120 M-PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E G ++TG E D ++P Q+R A R A F+R +P+HK ++V
Sbjct: 2052 FGDTEDVAGKAYTGREFDDLSPEQQRQACRTARCFARVEPAHKSRIV 2192
>dbj|AK292716.1| Homo sapiens cDNA FLJ77199 complete cds, highly similar to Homo
sapiens ATPase, Ca++ transporting, ubiquitous (ATP2A3),
transcript variant 6, mRNA
Length = 3536
Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats.
Identities = 76/167 (45%), Positives = 103/167 (61%), Gaps = 2/167 (1%)
Frame = +3
Query: 1 KRCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIPDPKQ-LDLSDP 59
+RC+ + R PLTP + K+ D LRC+A A R P K+ ++L D
Sbjct: 1740 ERCSSVRV-GSRTAPLTPTSREQILAKIRDWGSGSDTLRCLALATRDAPPRKEDMELDDC 1916
Query: 60 AKFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGL 119
+KF ETDLTFVG GMLDPPR EV IT+C+ AGIRV++ITGD K TA A+CRR+G+
Sbjct: 1917 SKFVQYETDLTFVGCVGMLDPPRPEVAACITRCYQAGIRVVMITGDNKGTAVAICRRLGI 2096
Query: 120 M-PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E G ++TG E D ++P Q+R A R A F+R +P+HK ++V
Sbjct: 2097 FGDTEDVAGKAYTGREFDDLSPEQQRQACRTARCFARVEPAHKSRIV 2237
>emb|Z69881.1|HSSERCA3M H.sapiens mRNA for adenosine triphosphatase, calcium
Length = 4553
Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats.
Identities = 76/167 (45%), Positives = 103/167 (61%), Gaps = 2/167 (1%)
Frame = +1
Query: 1 KRCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIPDPKQ-LDLSDP 59
+RC+ + R PLTP + K+ D LRC+A A R P K+ ++L D
Sbjct: 1573 ERCSSVRV-GSRTAPLTPTSREQILAKIRDWGSGSDTLRCLALATRDAPPRKEDMELDDC 1749
Query: 60 AKFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGL 119
+KF ETDLTFVG GMLDPPR EV IT+C+ AGIRV++ITGD K TA A+CRR+G+
Sbjct: 1750 SKFVQYETDLTFVGCVGMLDPPRPEVAACITRCYQAGIRVVMITGDNKGTAVAICRRLGI 1929
Query: 120 M-PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E G ++TG E D ++P Q+R A R A F+R +P+HK ++V
Sbjct: 1930 FGDTEDVAGKAYTGREFDDLSPEQQRQACRTARCFARVEPAHKSRIV 2070
>gb|AF115572.1|AF115572 Heliothis virescens sarco(endo)plasmic reticulum-type calcium ATPase
mRNA, complete cds
Length = 3003
Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats.
Identities = 77/167 (46%), Positives = 102/167 (61%), Gaps = 2/167 (1%)
Frame = +1
Query: 1 KRCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIP-DPKQLDLSDP 59
+RCT + VPL + + + + D LRC+A A P P ++DL D
Sbjct: 1567 ERCTHARVGTAK-VPLNSTLKNRILDLTRQYGTGRDTLRCLALATADSPLKPDEMDLGDS 1743
Query: 60 AKFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGL 119
KF E +LTFVGV GMLDPPR+EV ++I +C AGIRVIVITGD K TAEA+CRRIG+
Sbjct: 1744 TKFYTYEVNLTFVGVVGMLDPPRKEVFDSIVRCRAAGIRVIVITGDNKATAEAICRRIGV 1923
Query: 120 MPCEP-REGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E G SF+G E D + +++RAA A LFSR +P+HK ++V
Sbjct: 1924 FTEEEDTTGKSFSGREFDDLPVSEQRAACAKARLFSRVEPAHKSKIV 2064
>gb|AF068221.1|AF068221 Homo sapiens sarco-/endoplasmic reticulum Ca-ATPase 3 (ATP2A3)
mRNA, alternatively spliced, partial cds
Length = 2455
Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats.
Identities = 73/153 (47%), Positives = 97/153 (63%), Gaps = 2/153 (1%)
Frame = +1
Query: 15 PLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIPDPKQ-LDLSDPAKFEAIETDLTFVG 73
PLTP + K+ D LRC+A A R P K+ ++L D +KF ETDLTFVG
Sbjct: 7 PLTPTSREQILAKIRDWGSGSDTLRCLALATRDAPPRKEDMELDDCSKFVQYETDLTFVG 186
Query: 74 VCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM-PCEPREGLSFTG 132
GMLDPPR EV IT+C+ AGIRV++ITGD K TA A+CRR+G+ E G ++TG
Sbjct: 187 CVGMLDPPRPEVAACITRCYQAGIRVVMITGDNKGTAVAICRRLGIFGDTEDVAGKAYTG 366
Query: 133 YELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E D ++P Q+R A R A F+R +P+HK ++V
Sbjct: 367 REFDDLSPEQQRQACRTARCFARVEPAHKSRIV 465
>gb|AY702617.1| Panulirus argus SERCA (serca) mRNA, complete cds
Length = 3063
Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats.
Identities = 75/166 (45%), Positives = 100/166 (60%), Gaps = 2/166 (1%)
Frame = +1
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIP-DPKQLDLSDPA 60
RCT + + VPLT + + D LRC+ A P P+ +DL D
Sbjct: 1570 RCTHVRVGTQK-VPLTAGVKEKILAVTRDYGCGRDTLRCLGLATIDTPMKPEDMDLGDST 1746
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
KF E ++TFVGV GMLDPPR+EV ++I +C AGIRVIVITGD K TAEA+CRRIG+
Sbjct: 1747 KFYTYEVNMTFVGVVGMLDPPRKEVFDSIQRCRAAGIRVIVITGDNKATAEAICRRIGVF 1926
Query: 121 -PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E G+S++G E D++TP +R A + LFSR +P HK ++V
Sbjct: 1927 GEEEDTTGMSYSGREFDELTPPDQRIACMRSRLFSRVEPFHKSKIV 2064
>emb|AJ786643.1| Panulirus argus mRNA for SERCA Ca(2+)-ATPase pump (serca gene)
Length = 3063
Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats.
Identities = 75/166 (45%), Positives = 100/166 (60%), Gaps = 2/166 (1%)
Frame = +1
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIP-DPKQLDLSDPA 60
RCT + + VPLT + + D LRC+ A P P+ +DL D
Sbjct: 1570 RCTHVRVGTQK-VPLTAGVKEKILAVTRDYGCGRDTLRCLGLATIDTPMKPEDMDLGDST 1746
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
KF E ++TFVGV GMLDPPR+EV ++I +C AGIRVIVITGD K TAEA+CRRIG+
Sbjct: 1747 KFYTYEVNMTFVGVVGMLDPPRKEVFDSIQRCRAAGIRVIVITGDNKATAEAICRRIGVF 1926
Query: 121 -PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E G+S++G E D++TP +R A + LFSR +P HK ++V
Sbjct: 1927 GEEEDTTGMSYSGREFDELTPPDQRIACMRSRLFSRVEPFHKSKIV 2064
>ref|XM_001639478.1| Nematostella vectensis predicted protein (NEMVEDRAFT_v1g160437) mRNA,
complete cds
Length = 4424
Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats.
Identities = 76/153 (49%), Positives = 98/153 (64%), Gaps = 2/153 (1%)
Frame = +1
Query: 15 PLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIP-DPKQLDLSDPAKFEAIETDLTFVG 73
P+TPK+ + + + D LRC+A A P P ++DL KF E+ +TFVG
Sbjct: 1747 PMTPKMKAQILDLIKAYGTGADTLRCLALATVDDPIAPSKMDLEASEKFVNYESHMTFVG 1926
Query: 74 VCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM-PCEPREGLSFTG 132
V GMLDPPR EVT+AI C AGIRVIVITGD K TAEA+CRRI + E GLS++G
Sbjct: 1927 VAGMLDPPRPEVTDAIKLCAKAGIRVIVITGDNKATAEAICRRIEVFGQDEDTTGLSYSG 2106
Query: 133 YELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E D +TP+++R A A LFSR +PSHK ++V
Sbjct: 2107 REFDDLTPSEQREACLRARLFSRVEPSHKSKIV 2205
>gb|AF068220.1|AF068220 Homo sapiens sarco-/endoplasmic reticulum Ca-ATPase 3 (ATP2A3) mRNA,
alternatively spliced, complete cds
Length = 3197
Score = 141 bits (355), Expect = 8e-32, Method: Composition-based stats.
Identities = 75/167 (44%), Positives = 102/167 (61%), Gaps = 2/167 (1%)
Frame = +2
Query: 1 KRCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIPDPKQ-LDLSDP 59
+RC+ + R PLTP + K+ D LRC+A A R P K+ ++L D
Sbjct: 1691 ERCSSVRV-GSRTAPLTPTSREQILAKIRDWGSGSDTLRCLALATRDAPPRKEDMELDDC 1867
Query: 60 AKFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGL 119
+KF ETDLTFVG GMLDPPR EV IT+C+ AGIRV++ITGD K TA A+CRR+G+
Sbjct: 1868 SKFVQYETDLTFVGCVGMLDPPRPEVAACITRCYQAGIRVVMITGDNKGTAVAICRRLGI 2047
Query: 120 M-PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E G ++TG E D ++P Q+R A R F+R +P+HK ++V
Sbjct: 2048 FGDTEDVAGKAYTGREFDDLSPEQQRQACRTTRCFARVEPAHKSRIV 2188
>ref|XM_001688766.1| Anopheles gambiae str. PEST AGAP006186-PD (AgaP_AGAP006186) mRNA,
complete cds
Length = 3326
Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats.
Identities = 76/167 (45%), Positives = 101/167 (60%), Gaps = 2/167 (1%)
Frame = +2
Query: 1 KRCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIP-DPKQLDLSDP 59
+RCT + VPLT + + D LRC+A A P P +DL+D
Sbjct: 1772 ERCTHARVGSTK-VPLTQTLKQRILDLTRTYGTGRDTLRCLALATADSPMKPDDMDLNDS 1948
Query: 60 AKFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGL 119
KF E +LTFVGV GMLDPPR+EV ++I +C AGIRVIVITGD K TAEA+CRRIG+
Sbjct: 1949 TKFYTYEVNLTFVGVVGMLDPPRKEVQDSIVRCRAAGIRVIVITGDNKATAEAICRRIGV 2128
Query: 120 M-PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E G S++G E D ++ +++R A A LFSR +P+HK ++V
Sbjct: 2129 FGEDEDTTGKSYSGREFDDLSVSEQREACSRARLFSRVEPAHKSKIV 2269
>ref|XM_001688765.1| Anopheles gambiae str. PEST AGAP006186-PA (AgaP_AGAP006186) mRNA,
complete cds
Length = 4349
Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats.
Identities = 76/167 (45%), Positives = 101/167 (60%), Gaps = 2/167 (1%)
Frame = +2
Query: 1 KRCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIP-DPKQLDLSDP 59
+RCT + VPLT + + D LRC+A A P P +DL+D
Sbjct: 1772 ERCTHARVGSTK-VPLTQTLKQRILDLTRTYGTGRDTLRCLALATADSPMKPDDMDLNDS 1948
Query: 60 AKFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGL 119
KF E +LTFVGV GMLDPPR+EV ++I +C AGIRVIVITGD K TAEA+CRRIG+
Sbjct: 1949 TKFYTYEVNLTFVGVVGMLDPPRKEVQDSIVRCRAAGIRVIVITGDNKATAEAICRRIGV 2128
Query: 120 M-PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E G S++G E D ++ +++R A A LFSR +P+HK ++V
Sbjct: 2129 FGEDEDTTGKSYSGREFDDLSVSEQREACSRARLFSRVEPAHKSKIV 2269
>ref|XM_001688764.1| Anopheles gambiae str. PEST AGAP006186-PB (AgaP_AGAP006186) mRNA,
complete cds
Length = 3816
Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats.
Identities = 76/167 (45%), Positives = 101/167 (60%), Gaps = 2/167 (1%)
Frame = +2
Query: 1 KRCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIP-DPKQLDLSDP 59
+RCT + VPLT + + D LRC+A A P P +DL+D
Sbjct: 1772 ERCTHARVGSTK-VPLTQTLKQRILDLTRTYGTGRDTLRCLALATADSPMKPDDMDLNDS 1948
Query: 60 AKFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGL 119
KF E +LTFVGV GMLDPPR+EV ++I +C AGIRVIVITGD K TAEA+CRRIG+
Sbjct: 1949 TKFYTYEVNLTFVGVVGMLDPPRKEVQDSIVRCRAAGIRVIVITGDNKATAEAICRRIGV 2128
Query: 120 M-PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E G S++G E D ++ +++R A A LFSR +P+HK ++V
Sbjct: 2129 FGEDEDTTGKSYSGREFDDLSVSEQREACSRARLFSRVEPAHKSKIV 2269
>ref|XM_001688763.1| Anopheles gambiae str. PEST AGAP006186-PC (AgaP_AGAP006186) mRNA,
complete cds
Length = 3331
Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats.
Identities = 76/167 (45%), Positives = 101/167 (60%), Gaps = 2/167 (1%)
Frame = +1
Query: 1 KRCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIP-DPKQLDLSDP 59
+RCT + VPLT + + D LRC+A A P P +DL+D
Sbjct: 1777 ERCTHARVGSTK-VPLTQTLKQRILDLTRTYGTGRDTLRCLALATADSPMKPDDMDLNDS 1953
Query: 60 AKFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGL 119
KF E +LTFVGV GMLDPPR+EV ++I +C AGIRVIVITGD K TAEA+CRRIG+
Sbjct: 1954 TKFYTYEVNLTFVGVVGMLDPPRKEVQDSIVRCRAAGIRVIVITGDNKATAEAICRRIGV 2133
Query: 120 M-PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E G S++G E D ++ +++R A A LFSR +P+HK ++V
Sbjct: 2134 FGEDEDTTGKSYSGREFDDLSVSEQREACSRARLFSRVEPAHKSKIV 2274
>ref|XM_316251.4| Anopheles gambiae str. PEST AGAP006186-PE (AgaP_AGAP006186) mRNA,
complete cds
Length = 3182
Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats.
Identities = 76/167 (45%), Positives = 101/167 (60%), Gaps = 2/167 (1%)
Frame = +2
Query: 1 KRCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIP-DPKQLDLSDP 59
+RCT + VPLT + + D LRC+A A P P +DL+D
Sbjct: 1628 ERCTHARVGSTK-VPLTQTLKQRILDLTRTYGTGRDTLRCLALATADSPMKPDDMDLNDS 1804
Query: 60 AKFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGL 119
KF E +LTFVGV GMLDPPR+EV ++I +C AGIRVIVITGD K TAEA+CRRIG+
Sbjct: 1805 TKFYTYEVNLTFVGVVGMLDPPRKEVQDSIVRCRAAGIRVIVITGDNKATAEAICRRIGV 1984
Query: 120 M-PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E G S++G E D ++ +++R A A LFSR +P+HK ++V
Sbjct: 1985 FGEDEDTTGKSYSGREFDDLSVSEQREACSRARLFSRVEPAHKSKIV 2125
>ref|XM_002122199.1| PREDICTED: Ciona intestinalis similar to calcium-transpoting ATPase
(LOC100175957), mRNA
Length = 3318
Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats.
Identities = 75/166 (45%), Positives = 101/166 (60%), Gaps = 2/166 (1%)
Frame = +2
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFA-FRPIPDPKQLDLSDPA 60
RCT + R VP+T +I + + V D LRC+A P P Q++L D
Sbjct: 1616 RCTHVRVGTQR-VPMTSEIKQKIQSLVKDYGTGRDTLRCLALGTIDTPPSPSQMNLGDST 1792
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
KF ET +TFVG+ GMLDPPR EV +A+ C AGIRVIVITGD K TAEA+CRRIG+
Sbjct: 1793 KFVEYETGITFVGIVGMLDPPRLEVFQAVQDCRNAGIRVIVITGDNKATAEAICRRIGVF 1972
Query: 121 -PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E G+++TG E D ++ A++ A A LF+R +P+HK ++V
Sbjct: 1973 GEDEDTTGMAYTGREFDNLSVAEQAKACLRARLFARVEPAHKSKIV 2110
>gb|AF025849.1|AF025849 Procambarus clarkii sarco/endoplasmic reticulum Ca2+-ATPase (SERCA)
mRNA, complete cds
Length = 3868
Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 73/166 (43%), Positives = 103/166 (62%), Gaps = 2/166 (1%)
Frame = +2
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIP-DPKQLDLSDPA 60
RCT + + VPLT + + + D LRC+ A P P+ +DL + +
Sbjct: 1715 RCTHVRVGTQK-VPLTAGVKEKILSVTRDYGCGRDTLRCLGLATIDNPMKPEDMDLGEAS 1891
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
KF E ++TFVGV GMLDPPR+EV ++I +C AGIRVIVITGD K TAEA+CRRIG+
Sbjct: 1892 KFYTYEVNMTFVGVVGMLDPPRKEVKDSIQRCRDAGIRVIVITGDNKATAEAICRRIGVF 2071
Query: 121 P-CEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E G+S++G E D+++P ++R A + LFSR +P HK ++V
Sbjct: 2072 KEDEDTTGMSYSGREFDELSPEEQRQACIRSRLFSRVEPFHKSKIV 2209
>ref|XM_002120188.1| PREDICTED: Ciona intestinalis similar to calcium-transpoting ATPase
(LOC100182988), mRNA
Length = 4066
Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats.
Identities = 77/166 (46%), Positives = 98/166 (59%), Gaps = 2/166 (1%)
Frame = +2
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIP-DPKQLDLSDPA 60
RCT + + +T I ++ +V D LRC+A P P +DLSD
Sbjct: 1655 RCTHVRIGKNK-HEMTSDIKQSILERVKAYGTGRDTLRCLAVGVVDNPMSPSDMDLSDAT 1831
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
KF ET +TFVG+ GMLDPPR EV +A+ C AGIRVIVITGD K TAEA+CRRIG+
Sbjct: 1832 KFAKYETGITFVGIVGMLDPPRLEVFQAVQDCRNAGIRVIVITGDNKATAEAICRRIGVF 2011
Query: 121 -PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E G SFTG E DQ+ P Q+ A A LF+R +P+HK ++V
Sbjct: 2012 GEDEDTTGRSFTGREFDQLNPEQQFKACLEARLFARVEPAHKSKIV 2149
>ref|XM_002119881.1| PREDICTED: Ciona intestinalis similar to calcium-transpoting ATPase
(LOC100180638), mRNA
Length = 3072
Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats.
Identities = 75/166 (45%), Positives = 101/166 (60%), Gaps = 2/166 (1%)
Frame = +1
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFA-FRPIPDPKQLDLSDPA 60
RCT + R VP+T +I + + V D LRC+A P P Q++L D
Sbjct: 1624 RCTHVRVGTQR-VPMTSEIKQKIQSLVKDYGTGRDTLRCLALGTIDTPPSPSQMNLGDST 1800
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
KF ET +TFVG+ GMLDPPR EV +A+ C AGIRVIVITGD K TAEA+CRRIG+
Sbjct: 1801 KFVEYETGITFVGIVGMLDPPRLEVFQAVQDCRNAGIRVIVITGDNKATAEAICRRIGVF 1980
Query: 121 -PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E G+++TG E D ++ A++ A A LF+R +P+HK ++V
Sbjct: 1981 GEDEDTTGMAYTGREFDNLSVAEQAKACLRARLFARVEPAHKSKIV 2118
>dbj|AB098506.1| Halocynthia roretzi HrSERCA mRNA for sarco-endoplasimc reticulum
calcium ATPase, complete cds
Length = 3287
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 75/166 (45%), Positives = 102/166 (61%), Gaps = 2/166 (1%)
Frame = +3
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFA-FRPIPDPKQLDLSDPA 60
RCT + + +I +T I + + D LRC+A P+P Q+DL++
Sbjct: 1644 RCTHVRIGNQKIW-MTASIREQIMKLIKEYGTGRDTLRCLALGTIDNPPNPDQMDLTEST 1820
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
KF E+ +TFVGV GMLDPPR EV +AI +C AGIRVIVITGD K TAEA+CRRIG+
Sbjct: 1821 KFAQYESAITFVGVVGMLDPPRTEVFQAIQECKAAGIRVIVITGDNKATAEAICRRIGIF 2000
Query: 121 -PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E EGL++TG E D ++ ++ A A LF+R +PSHK ++V
Sbjct: 2001 GEDECTEGLAYTGREFDDLSEEEQFQACLRARLFARVEPSHKSKIV 2138
>ref|XM_001652036.1| Aedes aegypti calcium-transporting ATPase sarcoplasmic/endoplasmic
reticulum type (calcium pump) partial mRNA
Length = 3988
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 76/166 (45%), Positives = 101/166 (60%), Gaps = 2/166 (1%)
Frame = +1
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIP-DPKQLDLSDPA 60
RCT + VPLT + + + + D LRC+A A P P +DL+D
Sbjct: 1567 RCTHARVGSTK-VPLTQTLKNRILDLTRQYGTGRDTLRCLALATADNPMKPDDMDLNDST 1743
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
KF E +LTFVGV GMLDPPR+EV ++I +C AGIRVIVITGD K TAEA+CRRIG+
Sbjct: 1744 KFYTYEVNLTFVGVVGMLDPPRKEVLDSIARCRAAGIRVIVITGDNKATAEAICRRIGVF 1923
Query: 121 P-CEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E G S++G E D + +++R A A LFSR +P+HK ++V
Sbjct: 1924 TEDEDTTGKSYSGREFDDLPVSEQREACARARLFSRVEPAHKSKIV 2061
>ref|XM_001652035.1| Aedes aegypti calcium-transporting ATPase sarcoplasmic/endoplasmic
reticulum type (calcium pump) partial mRNA
Length = 4289
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 76/166 (45%), Positives = 101/166 (60%), Gaps = 2/166 (1%)
Frame = +1
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIP-DPKQLDLSDPA 60
RCT + VPLT + + + + D LRC+A A P P +DL+D
Sbjct: 1567 RCTHARVGSTK-VPLTQTLKNRILDLTRQYGTGRDTLRCLALATADNPMKPDDMDLNDST 1743
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
KF E +LTFVGV GMLDPPR+EV ++I +C AGIRVIVITGD K TAEA+CRRIG+
Sbjct: 1744 KFYTYEVNLTFVGVVGMLDPPRKEVLDSIARCRAAGIRVIVITGDNKATAEAICRRIGVF 1923
Query: 121 P-CEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E G S++G E D + +++R A A LFSR +P+HK ++V
Sbjct: 1924 TEDEDTTGKSYSGREFDDLPVSEQREACARARLFSRVEPAHKSKIV 2061
>ref|XM_001652034.1| Aedes aegypti calcium-transporting ATPase sarcoplasmic/endoplasmic
reticulum type (calcium pump) partial mRNA
Length = 5444
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 76/166 (45%), Positives = 101/166 (60%), Gaps = 2/166 (1%)
Frame = +1
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIP-DPKQLDLSDPA 60
RCT + VPLT + + + + D LRC+A A P P +DL+D
Sbjct: 1567 RCTHARVGSTK-VPLTQTLKNRILDLTRQYGTGRDTLRCLALATADNPMKPDDMDLNDST 1743
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
KF E +LTFVGV GMLDPPR+EV ++I +C AGIRVIVITGD K TAEA+CRRIG+
Sbjct: 1744 KFYTYEVNLTFVGVVGMLDPPRKEVLDSIARCRAAGIRVIVITGDNKATAEAICRRIGVF 1923
Query: 121 P-CEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E G S++G E D + +++R A A LFSR +P+HK ++V
Sbjct: 1924 TEDEDTTGKSYSGREFDDLPVSEQREACARARLFSRVEPAHKSKIV 2061
>ref|XM_001603521.1| PREDICTED: Nasonia vitripennis similar to sarco(endo)plasmic
reticulum-type calcium ATPase (LOC100113791), mRNA
Length = 3202
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 75/166 (45%), Positives = 101/166 (60%), Gaps = 2/166 (1%)
Frame = +1
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIP-DPKQLDLSDPA 60
RCT + PLT + + + + D LRC+A A P P+ +DL D
Sbjct: 1570 RCTHARVGSQKF-PLTSTLKNRILELTRQYGTGRDTLRCLALATADHPMKPEDMDLGDSN 1746
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
KF E +LTF+GV GMLDPPR+EV ++I +C AGIRVIVITGD K TAEA+CRRIG+
Sbjct: 1747 KFFTYEKELTFIGVVGMLDPPRKEVFDSIVRCRAAGIRVIVITGDNKATAEAICRRIGVF 1926
Query: 121 P-CEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E G S++G E D ++ ++RAA A LFSR +P+HK ++V
Sbjct: 1927 TEDEDTTGKSYSGREFDDLSIPEQRAACARARLFSRVEPAHKSKIV 2064
>ref|XM_001868153.1| Culex quinquefasciatus calcium-transporting atpase
sarcoplasmic/endoplasmic reticulum type, mRNA
Length = 3152
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 77/166 (46%), Positives = 101/166 (60%), Gaps = 2/166 (1%)
Frame = +1
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIP-DPKQLDLSDPA 60
RCT + VPLT + + + D LRC+A A P P+ +DL+D
Sbjct: 1549 RCTHARVGTTK-VPLTATLKKRILELTAQYGTGRDTLRCLALATADNPMKPEDMDLNDSN 1725
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
KF E +LTFVGV GMLDPPR+EV +AI +C AGIRVIVITGD K TAEA+CRRIG+
Sbjct: 1726 KFYTYEVNLTFVGVVGMLDPPRKEVLDAIARCRHAGIRVIVITGDNKATAEAICRRIGVF 1905
Query: 121 PCEP-REGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E G S++G E D + +++R A A LFSR +P+HK ++V
Sbjct: 1906 TEEEDTTGKSYSGREFDDLPVSEQRDACARARLFSRVEPAHKSKIV 2043
>emb|AJ310844.1|HVU310844 Hordeum vulgare partial CA5 gene for P-type ATPase
Length = 1953
Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats.
Identities = 77/167 (46%), Positives = 103/167 (61%), Gaps = 3/167 (1%)
Frame = +1
Query: 2 RCTRIMCKD-GRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIPDPKQ-LDLSDP 59
RCT I+C D G VPLT I + + K +G +D LRC+A A + +P+ +Q L D
Sbjct: 508 RCTHILCNDDGSSVPLTMDIRNELEAKFQSFAG-KDTLRCLALALKRMPEGQQSLSYDD- 681
Query: 60 AKFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGL 119
E +LTF+G+ GMLDPPR EV AI C +AGIRVIV+TGD K TAE++CR+IG
Sbjct: 682 ------EANLTFIGLVGMLDPPRDEVRSAIHSCMSAGIRVIVVTGDNKSTAESLCRQIGA 843
Query: 120 MP-CEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
+ G S+T E + + P ++ A+R VLFSR +PSHK LV
Sbjct: 844 FEHLDDFTGYSYTASEFEGLPPLERANALRRMVLFSRVEPSHKKMLV 984
>gb|BC044063.1| Xenopus laevis Calcium ATPase at 60A, mRNA (cDNA clone MGC:52615
IMAGE:4681241), complete cds
Length = 3703
Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats.
Identities = 81/167 (48%), Positives = 101/167 (60%), Gaps = 3/167 (1%)
Frame = +3
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIPDPKQLD--LSDP 59
RC + R VPLT I T+ T + D LRC+A A R P PK+ D L D
Sbjct: 1746 RCNYVRVGTTR-VPLTSAIKDTILTVIKEWGTGRDTLRCLALATRDTP-PKREDMVLEDS 1919
Query: 60 AKFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGL 119
KF ETDLTFVG GMLDPPR+EV +I C AGIRVI+ITGD K TA A+CRRIG+
Sbjct: 1920 TKFVDYETDLTFVGCVGMLDPPRKEVMGSIKLCREAGIRVIMITGDNKGTAIAICRRIGI 2099
Query: 120 M-PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
+ L+FTG E D + PA++R A + A F+R +PSHK ++V
Sbjct: 2100 FGENDDVSRLAFTGREFDDLPPAEQREACKRASCFARVEPSHKSKIV 2240
>ref|XM_001789529.1| PREDICTED: Bos taurus ATPase, Ca++ transporting, ubiquitous (ATP2A3),
mRNA
Length = 4471
Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats.
Identities = 76/167 (45%), Positives = 101/167 (60%), Gaps = 2/167 (1%)
Frame = +1
Query: 1 KRCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIPDPKQ-LDLSDP 59
+RC+ + R VPL + KV D LRC+A A R +P K+ + L D
Sbjct: 1567 ERCSSVRV-GSRTVPLDTTSREQILAKVKDWGSGLDTLRCLALATRDMPPRKEDMQLDDC 1743
Query: 60 AKFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGL 119
+KF ETDLTFVG GMLDPPR EV I +CH AGIRV++ITGD K TA A+CRR+G+
Sbjct: 1744 SKFVQYETDLTFVGCVGMLDPPRPEVAACIARCHQAGIRVVMITGDNKGTAVAICRRLGI 1923
Query: 120 MP-CEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E G ++TG E D ++P Q+R A R A F+R +P+HK ++V
Sbjct: 1924 FEDTEDVAGKAYTGREFDDLSPEQQRHACRTARCFARVEPTHKSRIV 2064
>ref|NM_001114154.1| Bos taurus ATPase, Ca++ transporting, ubiquitous (ATP2A3), mRNA
Length = 4380
Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats.
Identities = 76/167 (45%), Positives = 101/167 (60%), Gaps = 2/167 (1%)
Frame = +1
Query: 1 KRCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIPDPKQ-LDLSDP 59
+RC+ + R VPL + KV D LRC+A A R +P K+ + L D
Sbjct: 1567 ERCSSVRV-GSRTVPLDTTSREQILAKVKDWGSGLDTLRCLALATRDMPPRKEDMQLDDC 1743
Query: 60 AKFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGL 119
+KF ETDLTFVG GMLDPPR EV I +CH AGIRV++ITGD K TA A+CRR+G+
Sbjct: 1744 SKFVQYETDLTFVGCVGMLDPPRPEVAACIARCHQAGIRVVMITGDNKGTAVAICRRLGI 1923
Query: 120 MP-CEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E G ++TG E D ++P Q+R A R A F+R +P+HK ++V
Sbjct: 1924 FEDTEDVAGKAYTGREFDDLSPEQQRHACRTARCFARVEPTHKSRIV 2064
>gb|M26064.1|CHKATPCA Chicken Ca2+ ATPase, complete cds
Length = 3189
Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats.
Identities = 79/167 (47%), Positives = 99/167 (59%), Gaps = 3/167 (1%)
Frame = +1
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIPDPKQLD--LSDP 59
RC + R VPLTP + + + D LRC+A A R P PK D L D
Sbjct: 1591 RCNYVRVGTTR-VPLTPAVKEKILAVIKEWGTGRDTLRCLALATRDTP-PKMEDMMLVDS 1764
Query: 60 AKFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGL 119
KF ETDLTFVG GMLDPPR+EV +I C AGIRVI+ITGD K TA A+CRRIG+
Sbjct: 1765 TKFAEYETDLTFVGCVGMLDPPRKEVMGSIRLCRDAGIRVIMITGDNKGTAIAICRRIGI 1944
Query: 120 MP-CEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E G ++TG E D + PA++R A R A F+R +P+HK ++V
Sbjct: 1945 FTEDEEVSGRAYTGREFDDLPPAEQREACRRACCFARVEPTHKSKIV 2085
>ref|XM_002127144.1| PREDICTED: Ciona intestinalis similar to calcium-transpoting ATPase
(LOC100180619), mRNA
Length = 3115
Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats.
Identities = 75/166 (45%), Positives = 101/166 (60%), Gaps = 2/166 (1%)
Frame = +1
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFA-FRPIPDPKQLDLSDPA 60
RCT + R VP+T +I + + V D LRC+A P P Q++L D
Sbjct: 1564 RCTHVRVGTQR-VPMTFEIKQKIQSLVKDYGTGRDTLRCLALGTIDTPPSPSQMNLGDST 1740
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
KF ET +TFVG+ GMLDPPR EV +A+ C AGIRVIVITGD K TAEA+CRRIG+
Sbjct: 1741 KFVEYETGITFVGIVGMLDPPRLEVFQAVQDCRNAGIRVIVITGDNKATAEAICRRIGVF 1920
Query: 121 -PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E G+++TG E D ++ A++ A A LF+R +P+HK ++V
Sbjct: 1921 GEDEDTTGMAYTGREFDNLSVAEQAKACLRARLFARVEPAHKSKIV 2058
>ref|NM_001129236.1| Caenorhabditis elegans SERCA (Sarco-Endoplasmic Reticulum Calcium
ATPase) family member (sca-1) (sca-1) mRNA, complete cds
Length = 3634
Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats.
Identities = 74/167 (44%), Positives = 101/167 (60%), Gaps = 2/167 (1%)
Frame = +2
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIP-DPKQLDLSDPA 60
RCT + +G+ VPLT + + + + D LRC+A P ++L D
Sbjct: 1607 RCTHVRV-NGQKVPLTSAMTQKIVDQCVQYGTGRDTLRCLALGTIDTPVSVSNMNLEDST 1783
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
+F E D+TFVGV GMLDPPR EV+++I C+ AGIRVI+ITGD K TAEA+ RRIGL
Sbjct: 1784 QFVKYEQDITFVGVVGMLDPPRTEVSDSIKACNHAGIRVIMITGDNKNTAEAIGRRIGLF 1963
Query: 121 -PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLVN 166
E G ++TG E D + P Q+ A R A LF+R +PSHK ++V+
Sbjct: 1964 GENEDTTGKAYTGREFDDLPPEQQSEACRRAKLFARVEPSHKSKIVD 2104
>ref|NM_066985.3| Caenorhabditis elegans SERCA (Sarco-Endoplasmic Reticulum Calcium
ATPase) family member (sca-1) (sca-1) mRNA, complete cds
Length = 3640
Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats.
Identities = 74/167 (44%), Positives = 101/167 (60%), Gaps = 2/167 (1%)
Frame = +3
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIP-DPKQLDLSDPA 60
RCT + +G+ VPLT + + + + D LRC+A P ++L D
Sbjct: 1608 RCTHVRV-NGQKVPLTSAMTQKIVDQCVQYGTGRDTLRCLALGTIDTPVSVSNMNLEDST 1784
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
+F E D+TFVGV GMLDPPR EV+++I C+ AGIRVI+ITGD K TAEA+ RRIGL
Sbjct: 1785 QFVKYEQDITFVGVVGMLDPPRTEVSDSIKACNHAGIRVIMITGDNKNTAEAIGRRIGLF 1964
Query: 121 -PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLVN 166
E G ++TG E D + P Q+ A R A LF+R +PSHK ++V+
Sbjct: 1965 GENEDTTGKAYTGREFDDLPPEQQSEACRRAKLFARVEPSHKSKIVD 2105
>gb|AY158663.1| Porcellio scaber smooth endoplasmic reticulum calcium ATPase mRNA,
complete cds
Length = 3009
Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats.
Identities = 75/166 (45%), Positives = 100/166 (60%), Gaps = 2/166 (1%)
Frame = +1
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIP-DPKQLDLSDPA 60
RCT + VP+T I + D LRC+A A P P+ +DL D
Sbjct: 1570 RCTHARVGTQK-VPMTQGIKDKILAVTRDYGCGRDTLRCLALATIDNPIKPEDMDLGDAT 1746
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
KF E ++TFVGV GMLDPPR+EV ++I +C AGIRVIVITGD K TAEA+CRRIG+
Sbjct: 1747 KFYTYEVNMTFVGVVGMLDPPRKEVRDSIQQCRLAGIRVIVITGDNKATAEAICRRIGVF 1926
Query: 121 -PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E G S++G E D+++PA++ A + LFSR +P HK ++V
Sbjct: 1927 GENEDTTGKSYSGREFDELSPAEQLNACMKSRLFSRVEPFHKSKIV 2064
>ref|NM_066984.4| Caenorhabditis elegans SERCA (Sarco-Endoplasmic Reticulum Calcium
ATPase) family member (sca-1) (sca-1) mRNA, complete cds
Length = 3606
Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats.
Identities = 74/167 (44%), Positives = 101/167 (60%), Gaps = 2/167 (1%)
Frame = +2
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIP-DPKQLDLSDPA 60
RCT + +G+ VPLT + + + + D LRC+A P ++L D
Sbjct: 1607 RCTHVRV-NGQKVPLTSAMTQKIVDQCVQYGTGRDTLRCLALGTIDTPVSVSNMNLEDST 1783
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
+F E D+TFVGV GMLDPPR EV+++I C+ AGIRVI+ITGD K TAEA+ RRIGL
Sbjct: 1784 QFVKYEQDITFVGVVGMLDPPRTEVSDSIKACNHAGIRVIMITGDNKNTAEAIGRRIGLF 1963
Query: 121 -PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLVN 166
E G ++TG E D + P Q+ A R A LF+R +PSHK ++V+
Sbjct: 1964 GENEDTTGKAYTGREFDDLPPEQQSEACRRAKLFARVEPSHKSKIVD 2104
>emb|AJ012296.1|CEL012296 Caenorhabditis elegans mRNA for calcium ATPase, sarcoplasmic
reticulum isoform
Length = 3656
Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats.
Identities = 74/167 (44%), Positives = 101/167 (60%), Gaps = 2/167 (1%)
Frame = +3
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIP-DPKQLDLSDPA 60
RCT + +G+ VPLT + + + + D LRC+A P ++L D
Sbjct: 1629 RCTHVRV-NGQKVPLTSAMTQKIVDQCVQYGTGRDTLRCLALGTIDTPVSVSNMNLEDST 1805
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
+F E D+TFVGV GMLDPPR EV+++I C+ AGIRVI+ITGD K TAEA+ RRIGL
Sbjct: 1806 QFVKYEQDITFVGVVGMLDPPRTEVSDSIKACNHAGIRVIMITGDNKNTAEAIGRRIGLF 1985
Query: 121 -PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLVN 166
E G ++TG E D + P Q+ A R A LF+R +PSHK ++V+
Sbjct: 1986 GENEDTTGKAYTGREFDDLPPEQQSEACRRAKLFARVEPSHKSKIVD 2126
>ref|XM_001665850.1| Caenorhabditis briggsae hypothetical protein CBG18305 partial mRNA
Length = 3183
Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats.
Identities = 75/169 (44%), Positives = 102/169 (60%), Gaps = 4/169 (2%)
Frame = +1
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIPDP---KQLDLSD 58
RCT + +G+ VPLTP + + + + D LRC+A I P ++L D
Sbjct: 1579 RCTHVRV-NGQRVPLTPAMTQKIVDQCVQYGTGRDTLRCLALG--TIDSPVAVSSMNLED 1749
Query: 59 PAKFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIG 118
+F E ++TFVGV GMLDPPR EV ++I C+ AGIRVI+ITGD K TAEA+ RRIG
Sbjct: 1750 STQFVKYEQEITFVGVVGMLDPPRTEVMDSIKACNHAGIRVIMITGDNKNTAEAIGRRIG 1929
Query: 119 LM-PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLVN 166
L E G ++TG E D + P Q+ A R A LF+R +PSHK ++V+
Sbjct: 1930 LFGENEDTTGKAYTGREFDDLPPEQQSEACRRAKLFARVEPSHKSKIVD 2076
>emb|AJ132388.1|ATH132388 Arabidopsis thaliana mRNA for Ca2+-ATPase, ECA3 gene
Length = 3062
Score = 137 bits (346), Expect = 8e-31, Method: Composition-based stats.
Identities = 73/166 (43%), Positives = 102/166 (61%), Gaps = 2/166 (1%)
Frame = +3
Query: 2 RCTRIMCK-DGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIPDPKQLDLSDPA 60
RC +I+C DG +VPLT + + ++ R ++ LRC+A AF+ +P +Q D
Sbjct: 1587 RCNKILCNGDGSVVPLTAAGRAELESRFYRFG--DETLRCLALAFKTVPHGQQTISYDN- 1757
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
E DLTF+G+ GMLDPPR EV +A+ C TAGIRVIV+TGD K TAE++CR+IG
Sbjct: 1758 -----ENDLTFIGLVGMLDPPREEVRDAMLACMTAGIRVIVVTGDNKSTAESLCRKIGAF 1922
Query: 121 P-CEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
G+S+T E +++ Q+ A+R LFSR +PSHK LV
Sbjct: 1923 DNLVDFSGMSYTASEFERLPAVQQTLALRRMTLFSRVEPSHKRMLV 2060
>gb|AY737278.1| Danio rerio sarcoendoplasmic reticulum calcium ATPase (serca) mRNA,
complete cds
Length = 2985
Score = 137 bits (346), Expect = 8e-31, Method: Composition-based stats.
Identities = 77/166 (46%), Positives = 99/166 (59%), Gaps = 2/166 (1%)
Frame = +1
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIP-DPKQLDLSDPA 60
RC + R VPLT + + + D LRC+A A R P P++++L D
Sbjct: 1570 RCAYVRVGTTR-VPLTGPVKDKIMAVIKEWGTGRDTLRCLALATRDNPLRPEEMNLEDST 1746
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
KF ETDLTFVG GMLDPPR+EV +I C AGIRVI+ITGD K TA A+CRRIG+
Sbjct: 1747 KFAEYETDLTFVGCVGMLDPPRKEVVGSIELCRAAGIRVIMITGDNKGTAVAICRRIGIF 1926
Query: 121 P-CEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E G +FTG E D + Q+R AVR A ++R +PSHK ++V
Sbjct: 1927 SDDEDVTGRAFTGREFDDLPLPQQREAVRKACCYARVEPSHKSKIV 2064
>gb|BC085636.1| Danio rerio wu:cegs655, mRNA (cDNA clone MGC:92110 IMAGE:7048280),
complete cds
Length = 3425
Score = 137 bits (346), Expect = 8e-31, Method: Composition-based stats.
Identities = 77/166 (46%), Positives = 99/166 (59%), Gaps = 2/166 (1%)
Frame = +3
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIP-DPKQLDLSDPA 60
RC + R VPLT + + + D LRC+A A R P P++++L D
Sbjct: 1692 RCAYVRVGTTR-VPLTGPVKDKIMAVIKEWGTGRDTLRCLALATRDNPLRPEEMNLEDST 1868
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
KF ETDLTFVG GMLDPPR+EV +I C AGIRVI+ITGD K TA A+CRRIG+
Sbjct: 1869 KFAEYETDLTFVGCVGMLDPPRKEVVGSIELCRAAGIRVIMITGDNKGTAVAICRRIGIF 2048
Query: 121 P-CEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E G +FTG E D + Q+R AVR A ++R +PSHK ++V
Sbjct: 2049 SDDEDVTGRAFTGREFDDLPLPQQREAVRKACCYARVEPSHKSKIV 2186
>dbj|AB178533.1| Danio rerio atp2a1 mRNA for sarcoplasmic/endoplasmic reticulum
calcium ATPase 1, complete cds
Length = 2985
Score = 137 bits (346), Expect = 8e-31, Method: Composition-based stats.
Identities = 77/166 (46%), Positives = 99/166 (59%), Gaps = 2/166 (1%)
Frame = +1
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIP-DPKQLDLSDPA 60
RC + R VPLT + + + D LRC+A A R P P++++L D
Sbjct: 1570 RCAYVRVGTTR-VPLTGPVKDKIMAVIKEWGTGRDTLRCLALATRDNPLRPEEMNLEDST 1746
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
KF ETDLTFVG GMLDPPR+EV +I C AGIRVI+ITGD K TA A+CRRIG+
Sbjct: 1747 KFAEYETDLTFVGCVGMLDPPRKEVVGSIELCRAAGIRVIMITGDNKGTAVAICRRIGIF 1926
Query: 121 P-CEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E G +FTG E D + Q+R AVR A ++R +PSHK ++V
Sbjct: 1927 SDDEDVTGRAFTGREFDDLPLPQQREAVRKACCYARVEPSHKSKIV 2064
>gb|AF483025.1| Boltenia villosa calcium-transporting ATPase (serca) mRNA, partial
cds
Length = 592
Score = 137 bits (346), Expect = 9e-31, Method: Composition-based stats.
Identities = 75/152 (49%), Positives = 96/152 (63%), Gaps = 2/152 (1%)
Frame = +2
Query: 16 LTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIP-DPKQLDLSDPAKFEAIETDLTFVGV 74
+TP I + V D LRC+A P +P +DL + +KF E+D+TFVGV
Sbjct: 32 MTPSIREQIMKVVKEYGTGRDTLRCLALGTIDNPQNPDSMDLIESSKFATYESDITFVGV 211
Query: 75 CGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM-PCEPREGLSFTGY 133
GMLDPPR EV +AI +C AGIRVIVITGD K TAEA+CRRIG+ E EGL+FTG
Sbjct: 212 VGMLDPPRTEVFQAIQECRAAGIRVIVITGDNKATAEAICRRIGVFGEDECTEGLAFTGR 391
Query: 134 ELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E D + ++ AV A LF+R +PSHK ++V
Sbjct: 392 EFDDLPREEQSKAVLTARLFARVEPSHKSKIV 487
>ref|XM_001502689.2| PREDICTED: Equus caballus similar to ATPase, Ca++ transporting,
ubiquitous (LOC100072684), mRNA
Length = 3159
Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats.
Identities = 75/167 (44%), Positives = 100/167 (59%), Gaps = 2/167 (1%)
Frame = +1
Query: 1 KRCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIPDPKQ-LDLSDP 59
+RC+ + VPL + K+ D LRC+A A R P K+ + L D
Sbjct: 1594 ERCSSVRV-GSHTVPLNATSREQILAKIRDWGSGSDTLRCLALATRDAPPRKEDMQLDDC 1770
Query: 60 AKFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGL 119
+KF ETDLTFVG GMLDPPR EV IT+C+ AGIRV++ITGD K TA A+CRR+G+
Sbjct: 1771 SKFVEYETDLTFVGCVGMLDPPRPEVAACITRCYRAGIRVVMITGDNKGTAVAICRRLGI 1950
Query: 120 M-PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E G +FTG E D ++P Q+R A R A F+R +P+HK ++V
Sbjct: 1951 FEETEDVTGKAFTGREFDDLSPEQQRHACRTARCFARVEPAHKSRIV 2091
>emb|Y18063.1|GGA18063 Gallus gallus mRNA for endoplasmic reticulum calcuim pump
Length = 3877
Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats.
Identities = 73/167 (43%), Positives = 102/167 (61%), Gaps = 2/167 (1%)
Frame = +1
Query: 1 KRCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIPDPKQ-LDLSDP 59
+RCT + + VPLTP + + +++ D LRC+A A P ++ + L D
Sbjct: 1660 ERCTHVRVGTAK-VPLTPPVREKILSQIRDWGMGTDTLRCLALATHDAPVQRETMQLHDS 1836
Query: 60 AKFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGL 119
F ET+LTFVG GMLDPPR+EVT +I C AGIRVI+ITGD K TA A+CRRIG+
Sbjct: 1837 TTFTHYETNLTFVGCVGMLDPPRKEVTSSIEMCRKAGIRVIMITGDNKGTAVAICRRIGI 2016
Query: 120 MP-CEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E G ++TG E D+++P +R A R A F+R +P+HK ++V
Sbjct: 2017 FTESEDVAGKAYTGREFDELSPEAQRQACREARCFARVEPAHKSRIV 2157
>gb|AF025848.1|AF025848 Procambarus clarkii sarco/endoplasmic reticulum Ca2+-ATPase (SERCA)
mRNA, complete cds
Length = 4690
Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats.
Identities = 72/166 (43%), Positives = 102/166 (61%), Gaps = 2/166 (1%)
Frame = +1
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIP-DPKQLDLSDPA 60
RCT + + VPLT + + + D LRC+ A P P+ +DL + +
Sbjct: 1765 RCTHVRVGTQK-VPLTAGVKEKILSVTRDYGCGRDTLRCLGLATIDNPMKPEDMDLGEAS 1941
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
KF E ++TFVGV GMLDPPR+EV ++I +C AGIRVIVITGD K TAEA+CRRIG+
Sbjct: 1942 KFYTYEVNMTFVGVVGMLDPPRKEVKDSIQRCRDAGIRVIVITGDNKATAEAICRRIGVF 2121
Query: 121 P-CEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E G+S++G E D+++P ++R A + LFSR +P K ++V
Sbjct: 2122 KEDEDTTGMSYSGREFDELSPEEQRQACIRSRLFSRVEPFRKSKIV 2259
>ref|NM_001077533.1| Danio rerio ATPase, Ca++ transporting, cardiac muscle, fast twitch 1
like (atp2a1l), mRNA
Length = 3449
Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats.
Identities = 76/166 (45%), Positives = 100/166 (60%), Gaps = 2/166 (1%)
Frame = +2
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIP-DPKQLDLSDPA 60
RCT + R VPLT + + + D LRC+A A R P ++++L D
Sbjct: 1700 RCTYVRVGSTR-VPLTGAVKDKIMNVIKEWGTGRDTLRCLALATRDSPLKVEEMNLEDST 1876
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
KF ETDLTFVG GMLDPPR+EVT +I C AGIRVI+ITGD K TA A+CRRIG+
Sbjct: 1877 KFADYETDLTFVGCVGMLDPPRKEVTGSIELCRAAGIRVIMITGDNKGTAVAICRRIGIF 2056
Query: 121 P-CEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E G ++TG E D + +++ AVR A F+R +PSHK ++V
Sbjct: 2057 SEDEDVTGKAYTGREFDDLPHSEQSEAVRRACCFARVEPSHKSKIV 2194
>gb|BC125955.1| Danio rerio ATPase, Ca++ transporting, cardiac muscle, fast twitch 1
like, mRNA (cDNA clone MGC:154094 IMAGE:8344720),
complete cds
Length = 3490
Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats.
Identities = 76/166 (45%), Positives = 100/166 (60%), Gaps = 2/166 (1%)
Frame = +2
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIP-DPKQLDLSDPA 60
RCT + R VPLT + + + D LRC+A A R P ++++L D
Sbjct: 1700 RCTYVRVGSTR-VPLTGAVKDKIMNVIKEWGTGRDTLRCLALATRDSPLKVEEMNLEDST 1876
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
KF ETDLTFVG GMLDPPR+EVT +I C AGIRVI+ITGD K TA A+CRRIG+
Sbjct: 1877 KFADYETDLTFVGCVGMLDPPRKEVTGSIELCRAAGIRVIMITGDNKGTAVAICRRIGIF 2056
Query: 121 P-CEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E G ++TG E D + +++ AVR A F+R +PSHK ++V
Sbjct: 2057 SEDEDVTGKAYTGREFDDLPHSEQSEAVRRACCFARVEPSHKSKIV 2194
>ref|XM_001744766.1| Monosiga brevicollis MX1 predicted protein MONBRDRAFT_7291 mRNA,
complete cds
Length = 2997
Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats.
Identities = 76/169 (44%), Positives = 103/169 (60%), Gaps = 4/169 (2%)
Frame = +1
Query: 1 KRCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIPDPK---QLDLS 57
+RC + DG V L + + ++ K LRC+ A P K +
Sbjct: 1543 ERCKMVRLDDGSTVELDNALRAKISAKFLEYGTGSKTLRCLGLATVDEPASKSEVEKLAV 1722
Query: 58 DPAKFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRI 117
DPA F +ET++TFVGV GMLDPPR+EV I +C+ AGIRVIVITGD K+TA A+CRRI
Sbjct: 1723 DPANFVKVETNMTFVGVVGMLDPPRQEVKGCIAECNGAGIRVIVITGDNKDTAVAICRRI 1902
Query: 118 GLM-PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
G+ E +G +FTG E M+ AQ+R AV++A LF+R +P+HK Q+V
Sbjct: 1903 GVFGEKEDVKGKAFTGAEFAAMSEAQQRDAVQHARLFARVEPAHKSQIV 2049
>emb|Z92807.1|CEK11D9 Caenorhabditis elegans Cosmid K11D9, complete sequence
Length = 32205
Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats.
Identities = 74/167 (44%), Positives = 101/167 (60%), Gaps = 2/167 (1%)
Frame = -3
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIP-DPKQLDLSDPA 60
RCT + +G+ VPLT + + + + D LRC+A P ++L D
Sbjct: 16357 RCTHVRV-NGQKVPLTSAMTQKIVDQCVQYGTGRDTLRCLALGTIDTPVSVSNMNLEDST 16181
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
+F E D+TFVGV GMLDPPR EV+++I C+ AGIRVI+ITGD K TAEA+ RRIGL
Sbjct: 16180 QFVKYEQDITFVGVVGMLDPPRTEVSDSIKACNHAGIRVIMITGDNKNTAEAIGRRIGLF 16001
Query: 121 -PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLVN 166
E G ++TG E D + P Q+ A R A LF+R +PSHK ++V+
Sbjct: 16000 GENEDTTGKAYTGREFDDLPPEQQSEACRRAKLFARVEPSHKSKIVD 15860
>ref|XM_001868860.1| Culex quinquefasciatus calcium-transporting ATPase
sarcoplasmic/endoplasmic reticulum type, mRNA
Length = 2445
Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats.
Identities = 77/166 (46%), Positives = 101/166 (60%), Gaps = 2/166 (1%)
Frame = +1
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIP-DPKQLDLSDPA 60
RCT + VPLT + + + D LRC+A A P P+ +DL+D
Sbjct: 1612 RCTHARVGTTK-VPLTATLKKRILELTAQYGTGRDTLRCLALATADNPMKPEDMDLNDSN 1788
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
KF E +LTFVGV GMLDPPR+EV +AI +C AGIRVIVITGD K TAEA+CRRIG+
Sbjct: 1789 KFYTYEVNLTFVGVVGMLDPPRKEVLDAIARCRHAGIRVIVITGDNKATAEAICRRIGVF 1968
Query: 121 PCEP-REGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E G S++G E D + +++R A A LFSR +P+HK ++V
Sbjct: 1969 TEEEDTTGKSYSGREFDDLPVSEQRDACARARLFSRVEPAHKSKIV 2106
>ref|XM_001369107.1| PREDICTED: Monodelphis domestica similar to calcium-transporting
ATPase (LOC100014945), mRNA
Length = 3186
Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats.
Identities = 77/166 (46%), Positives = 99/166 (59%), Gaps = 2/166 (1%)
Frame = +1
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIPDPKQ-LDLSDPA 60
RC + R VPLT + + T + D LRC+A A R P ++ + L D A
Sbjct: 1723 RCNYVRVGTTR-VPLTTPVKDKIMTVIKEWGTGRDTLRCLALATRDTPPRREEMSLDDSA 1899
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
KF ETDLTFVGV GMLDPPR+EV +I C AGIRVI+ITGD K TA A+CRRIG+
Sbjct: 1900 KFMEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIF 2079
Query: 121 -PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E G ++TG E D + ++R A R A F+R +PSHK ++V
Sbjct: 2080 GENEEVTGRAYTGREFDDLPLGEQRDACRRACCFARVEPSHKSKIV 2217
>ref|XM_001220797.1| Chaetomium globosum CBS 148.51 hypothetical protein (CHGG_01577)
partial mRNA
Length = 2991
Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats.
Identities = 76/170 (44%), Positives = 105/170 (61%), Gaps = 4/170 (2%)
Frame = +1
Query: 1 KRCTR-IMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPI--PDPKQLDLS 57
+RCT ++ +DG+ VPL K+ + +V LR IA A R DP
Sbjct: 1531 ERCTHTVLGRDGKRVPLDRKLTDLLLKEVVVYG--NKGLRVIALARRENVNGDPLLHKAK 1704
Query: 58 DPAKFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRI 117
A++ A+E +LT +G+ GMLDPPR EV AI KC AGIRVIV+TGD + TAE +CR+I
Sbjct: 1705 STAEYAALEQNLTLIGLVGMLDPPRPEVPAAIQKCKDAGIRVIVVTGDNRNTAETICRQI 1884
Query: 118 GLM-PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLVN 166
G+ P E G SFTG E D ++P+++ A +NA LFSR +P+HK +LV+
Sbjct: 1885 GVFGPKEDLAGKSFTGREFDNLSPSEQLEAAKNASLFSRVEPTHKSKLVD 2034
>gb|EU082212.1| Arabidopsis thaliana endomembrane calcium ATPase 3 (ECA3) mRNA,
complete cds
Length = 3045
Score = 135 bits (341), Expect = 4e-30, Method: Composition-based stats.
Identities = 73/166 (43%), Positives = 102/166 (61%), Gaps = 2/166 (1%)
Frame = +3
Query: 2 RCTRIMCK-DGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIPDPKQLDLSDPA 60
RC +I+C DG +VPLT + + ++ S ++ LRC+A AF+ +P +Q D
Sbjct: 1578 RCNKILCNGDGSVVPLTAAGRAELESRF--YSFGDETLRCLALAFKTVPHGQQTISYDN- 1748
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
E DLTF+G+ GMLDPPR EV +A+ C TAGIRVIV+TGD K TAE++CR+IG
Sbjct: 1749 -----ENDLTFIGLVGMLDPPREEVRDAMLACMTAGIRVIVVTGDNKSTAESLCRKIGAF 1913
Query: 121 P-CEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
G+S+T E +++ Q+ A+R LFSR +PSHK LV
Sbjct: 1914 DNLVDFSGMSYTASEFERLPAVQQTLALRRMTLFSRVEPSHKRMLV 2051
>dbj|AK229199.1| Arabidopsis thaliana mRNA for putative calcium ATPase, complete cds,
clone: RAFL16-49-C03
Length = 3425
Score = 135 bits (341), Expect = 4e-30, Method: Composition-based stats.
Identities = 73/166 (43%), Positives = 102/166 (61%), Gaps = 2/166 (1%)
Frame = +3
Query: 2 RCTRIMCK-DGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIPDPKQLDLSDPA 60
RC +I+C DG +VPLT + + ++ S ++ LRC+A AF+ +P +Q D
Sbjct: 1767 RCNKILCNGDGSVVPLTAAGRAELESRF--YSFGDETLRCLALAFKTVPHGQQTISYDN- 1937
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
E DLTF+G+ GMLDPPR EV +A+ C TAGIRVIV+TGD K TAE++CR+IG
Sbjct: 1938 -----ENDLTFIGLVGMLDPPREEVRDAMLACMTAGIRVIVVTGDNKSTAESLCRKIGAF 2102
Query: 121 P-CEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
G+S+T E +++ Q+ A+R LFSR +PSHK LV
Sbjct: 2103 DNLVDFSGMSYTASEFERLPAVQQTLALRRMTLFSRVEPSHKRMLV 2240
>ref|NM_100887.2| Arabidopsis thaliana ECA3 (ENDOPLASMIC RETICULUM-TYPE
CALCIUM-TRANSPORTING ATPASE 3); calcium-transporting
ATPase/ calmodulin binding (ECA3) mRNA, complete cds
Length = 3478
Score = 135 bits (341), Expect = 4e-30, Method: Composition-based stats.
Identities = 73/166 (43%), Positives = 102/166 (61%), Gaps = 2/166 (1%)
Frame = +3
Query: 2 RCTRIMCK-DGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIPDPKQLDLSDPA 60
RC +I+C DG +VPLT + + ++ S ++ LRC+A AF+ +P +Q D
Sbjct: 1767 RCNKILCNGDGSVVPLTAAGRAELESRF--YSFGDETLRCLALAFKTVPHGQQTISYDN- 1937
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
E DLTF+G+ GMLDPPR EV +A+ C TAGIRVIV+TGD K TAE++CR+IG
Sbjct: 1938 -----ENDLTFIGLVGMLDPPREEVRDAMLACMTAGIRVIVVTGDNKSTAESLCRKIGAF 2102
Query: 121 P-CEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
G+S+T E +++ Q+ A+R LFSR +PSHK LV
Sbjct: 2103 DNLVDFSGMSYTASEFERLPAVQQTLALRRMTLFSRVEPSHKRMLV 2240
>gb|AF117296.1|AF117296 Arabidopsis thaliana putative endoplasmic reticulum-type
calcium-transporting ATPase 3 (ECA3) mRNA, complete cds
Length = 3275
Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats.
Identities = 73/166 (43%), Positives = 102/166 (61%), Gaps = 2/166 (1%)
Frame = +3
Query: 2 RCTRIMCK-DGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIPDPKQLDLSDPA 60
RC +I+C DG +VPLT + + ++ S ++ LRC+A AF+ +P +Q D
Sbjct: 1599 RCNKILCNGDGSVVPLTAAGRAELESRF--YSFGDETLRCLALAFKTVPHGQQTISYDN- 1769
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
E DLTF+G+ GMLDPPR EV +A+ C TAGIRVIV+TGD K TAE++CR+IG
Sbjct: 1770 -----ENDLTFIGLVGMLDPPREEVRDAMLACMTAGIRVIVVTGDNKSTAESLCRKIGAF 1934
Query: 121 P-CEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
G+S+T E +++ Q+ A+R LFSR +PSHK LV
Sbjct: 1935 DNLVDFSGMSYTASEFERLPAVQQTLALRRMTLFSRVEPSHKRMLV 2072
>emb|AJ311784.1|CNO311784 Cymodocea nodosa CCA4 gene for P-type ATPase
Length = 1129
Score = 135 bits (340), Expect = 5e-30, Method: Composition-based stats.
Identities = 73/167 (43%), Positives = 104/167 (62%), Gaps = 3/167 (1%)
Frame = +1
Query: 2 RCTRIMCKD-GRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIP-DPKQLDLSDP 59
RCT I+C D G VPLT + + ++ +G D+LRC+AFA + +P D + L D
Sbjct: 508 RCTHILCNDDGSSVPLTADTRAELESRFQSFAG-RDSLRCLAFALKRMPVDQQSLSPDD- 681
Query: 60 AKFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGL 119
E ++TF+G+ GMLDPPR EV A+ C +AGIRV+V+TGD K TAE++CRRIG
Sbjct: 682 ------EVNMTFIGLVGMLDPPREEVKNAMLSCISAGIRVVVVTGDNKSTAESLCRRIGA 843
Query: 120 MP-CEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
+ G S+T E + + P Q+ +A++ VLF+R +PSHK LV
Sbjct: 844 FKHFDDFSGYSYTASEFEALPPLQRASALQRMVLFARVEPSHKKMLV 984
>emb|AJ298902.1|RCL298902 Rana clamitans mRNA for Ca2+-ATPase 1 (atp2A1 gene)
Length = 3793
Score = 135 bits (340), Expect = 5e-30, Method: Composition-based stats.
Identities = 78/167 (46%), Positives = 100/167 (59%), Gaps = 3/167 (1%)
Frame = +3
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIPDPKQLD--LSDP 59
RC + R VP T I + + V D LRC+A A R P PK+ D L D
Sbjct: 1776 RCNYVRVGTTR-VPFTSGIKDKILSVVKEWGTGRDTLRCLALATRDTP-PKREDMVLEDS 1949
Query: 60 AKFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGL 119
KF ETDLTFVG GMLDPPR+EV +I C AGIRVI+ITGD K TA A+CRRIG+
Sbjct: 1950 TKFADYETDLTFVGCVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGI 2129
Query: 120 M-PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
+ ++TG E D + PA++R AV++A F+R +PSHK ++V
Sbjct: 2130 FGENDDVSSRAYTGREFDDLPPAEQREAVKHASCFARVEPSHKSKIV 2270
>emb|AJ298901.1|RSY298901 Rana sylvatica mRNA for Ca2+-ATPase (atp2A1 gene)
Length = 3790
Score = 135 bits (339), Expect = 6e-30, Method: Composition-based stats.
Identities = 78/167 (46%), Positives = 99/167 (59%), Gaps = 3/167 (1%)
Frame = +3
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIPDPKQLD--LSDP 59
RC + R VP T I + V D LRC+A A R P PK+ D L D
Sbjct: 1773 RCNYVRVGTTR-VPFTSAIKDKINAVVKEWGTGRDTLRCLALATRDTP-PKREDMVLEDA 1946
Query: 60 AKFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGL 119
KF ETDLTFVG GMLDPPR+EV +I C AGIRVI+ITGD K TA A+CRRIG+
Sbjct: 1947 TKFAEYETDLTFVGCVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGI 2126
Query: 120 MP-CEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
+ ++TG E D + PA++R AV++A F+R +PSHK ++V
Sbjct: 2127 FSENDDVSTRAYTGREFDDLPPAEQREAVKHASCFARVEPSHKSKIV 2267
>ref|XM_849463.1| PREDICTED: Canis familiaris similar to sarco/endoplasmic reticulum
Ca2+ -ATPase isoform a, transcript variant 2 (LOC491437),
mRNA
Length = 3011
Score = 135 bits (339), Expect = 6e-30, Method: Composition-based stats.
Identities = 73/167 (43%), Positives = 98/167 (58%), Gaps = 2/167 (1%)
Frame = +1
Query: 1 KRCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIPDPKQ-LDLSDP 59
+RC+ + R VPL + K+ D LRC+A A R P K+ + L D
Sbjct: 1573 ERCSSVRVGSHR-VPLNATSREQILAKIRDWGSGSDTLRCLALATRDAPPRKEDMQLDDC 1749
Query: 60 AKFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGL 119
+KF E DLTFVG GMLDPPR EV I +CH AGIRV++ITGD K TA A+CRR+G+
Sbjct: 1750 SKFVQYEMDLTFVGCVGMLDPPRPEVAACIARCHRAGIRVVMITGDNKATAVAICRRLGI 1929
Query: 120 M-PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E ++TG E D ++P Q+R A R A F+R +P+HK ++V
Sbjct: 1930 FRDAEDVVSKAYTGREFDDLSPEQQRHACRTACCFARVEPAHKSRIV 2070
>ref|XM_548558.2| PREDICTED: Canis familiaris similar to sarco/endoplasmic reticulum
Ca2+ -ATPase isoform a, transcript variant 1 (LOC491437),
mRNA
Length = 3102
Score = 135 bits (339), Expect = 6e-30, Method: Composition-based stats.
Identities = 73/167 (43%), Positives = 98/167 (58%), Gaps = 2/167 (1%)
Frame = +1
Query: 1 KRCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIPDPKQ-LDLSDP 59
+RC+ + R VPL + K+ D LRC+A A R P K+ + L D
Sbjct: 1573 ERCSSVRVGSHR-VPLNATSREQILAKIRDWGSGSDTLRCLALATRDAPPRKEDMQLDDC 1749
Query: 60 AKFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGL 119
+KF E DLTFVG GMLDPPR EV I +CH AGIRV++ITGD K TA A+CRR+G+
Sbjct: 1750 SKFVQYEMDLTFVGCVGMLDPPRPEVAACIARCHRAGIRVVMITGDNKATAVAICRRLGI 1929
Query: 120 M-PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E ++TG E D ++P Q+R A R A F+R +P+HK ++V
Sbjct: 1930 FRDAEDVVSKAYTGREFDDLSPEQQRHACRTACCFARVEPAHKSRIV 2070
>ref|XM_001363832.1| PREDICTED: Monodelphis domestica hypothetical protein LOC100015597
(LOC100015597), mRNA
Length = 2994
Score = 134 bits (337), Expect = 9e-30, Method: Composition-based stats.
Identities = 75/166 (45%), Positives = 99/166 (59%), Gaps = 2/166 (1%)
Frame = +1
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIPDPKQ-LDLSDPA 60
RCT I + VP+TP + + T + D LRC+A A P ++ ++L D A
Sbjct: 1567 RCTHIRVGSTK-VPMTPGVKQKIMTVIREWGTGRDTLRCLALATHDNPPRREDMNLEDSA 1743
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
F ET+LTFVG GMLDPPR EV +I C AGIRVI+ITGD K TA A+CRRIG+
Sbjct: 1744 NFIKYETNLTFVGCVGMLDPPRTEVASSIKLCRQAGIRVIMITGDNKGTAVAICRRIGIF 1923
Query: 121 PCEPR-EGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E +FTG E D++ P+ +R A NA F+R +PSHK ++V
Sbjct: 1924 GNEEDVTAKAFTGREFDELNPSAQRDACLNARCFARVEPSHKSKIV 2061
>gb|AY068245.1| Schmidtea mediterranea clone H.85.3h(T3) unknown mRNA sequence
Length = 600
Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats.
Identities = 73/150 (48%), Positives = 99/150 (66%), Gaps = 6/150 (4%)
Frame = +1
Query: 22 STVTTKVNRMSGM----EDALRCIAFAFRPIPDPK-QLDLSDPAKFEAIETDLTFVGVCG 76
+ + +++ R++G D LRC+A A P K Q++L D +F ET++TFVGV G
Sbjct: 1 AAIKSEIMRITGEYGTGRDTLRCLALATLDNPFKKEQMNLEDSNQFYKYETNMTFVGVVG 180
Query: 77 MLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLMP-CEPREGLSFTGYEL 135
MLDPPR EV ++I KC AGIRVIVITGD K TAEA+CRRIG+ E G S+TG E
Sbjct: 181 MLDPPRTEVFDSIVKCRMAGIRVIVITGDNKATAEAICRRIGVFSENETTFGKSYTGREF 360
Query: 136 DQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
D ++ K+ AVR A LF+R +P+HK ++V
Sbjct: 361 DDLSEEMKKEAVRRAKLFARVEPAHKSKIV 450
>ref|NM_001030277.1| Danio rerio ATPase, Ca++ transporting, cardiac muscle, slow twitch 2b
(atp2a2b), mRNA
Length = 4312
Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats.
Identities = 77/166 (46%), Positives = 99/166 (59%), Gaps = 2/166 (1%)
Frame = +1
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIPDPKQ-LDLSDPA 60
RCT I G VP+TP I + + + D LRC+A A R P K+ L L D
Sbjct: 1564 RCTHIRV-GGNKVPMTPGIKEKIMSVIREYGTGRDTLRCLALATRDNPLSKESLVLEDST 1740
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
+F ETDLTFVG GMLDPPR EV +I C AGIRVI+ITGD K TA A+CRRIG+
Sbjct: 1741 RFVEYETDLTFVGCVGMLDPPRAEVAASIKLCRQAGIRVIMITGDNKGTAVAICRRIGIF 1920
Query: 121 -PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
+ +++TG E D ++ A +R AV A F+R +PSHK ++V
Sbjct: 1921 GENDDVSRMAYTGREFDDLSAAAQREAVLTARCFARVEPSHKSKIV 2058
>gb|EU943132.1| Zea mays clone 1566619 mRNA sequence
Length = 2694
Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats.
Identities = 76/178 (42%), Positives = 101/178 (56%), Gaps = 13/178 (7%)
Frame = +3
Query: 1 KRCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPI----------PD 50
+R + I KDG +VPL K TV ++ MS +ALRC+ FA++
Sbjct: 990 ERSSHIQLKDGSVVPLDEKAKRTVLASLHEMS--TNALRCLGFAYKEALAEFATYDGENH 1163
Query: 51 PKQLDLSDPAKFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETA 110
P L DPA + AIETDL F G+ G+ DPPR EV +AI C AGIRV+VITGD KETA
Sbjct: 1164 PAHKLLLDPANYAAIETDLIFAGLVGLRDPPREEVYDAIEDCRAAGIRVMVITGDNKETA 1343
Query: 111 EAVCRRIGLMPCEPREGLSF---TGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
EA+CR IG+ P E ++F TG E + + + +LFSR +P HK ++V
Sbjct: 1344 EAICREIGVF--SPDEDITFKSLTGKEFMALEDKKTLLRRKGGLLFSRAEPRHKQEIV 1511
>gb|BC084962.1| Xenopus laevis hypothetical LOC495440, mRNA (cDNA clone MGC:84058
IMAGE:6948237), complete cds
Length = 6578
Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats.
Identities = 73/168 (43%), Positives = 103/168 (61%), Gaps = 3/168 (1%)
Frame = +2
Query: 1 KRCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIPDPK--QLDLSD 58
+RC + ++ PLTP + +K+ D LRC+A A R +P PK L L D
Sbjct: 1823 ERCNYVRVGSTKL-PLTPSAREKIMSKIRDWGTGIDTLRCLALATRDVP-PKLEDLQLED 1996
Query: 59 PAKFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIG 118
KF ET+LTFVG GMLDPPR+EV+ +I C AGI+VI+ITGD K TA A+CR+IG
Sbjct: 1997 STKFINYETNLTFVGCVGMLDPPRKEVSTSIELCKKAGIKVIMITGDNKGTAVAICRKIG 2176
Query: 119 LMP-CEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
+ E ++TG E D ++P ++R A R+A F+R +P+HK ++V
Sbjct: 2177 IFSEYEDITDKAYTGREFDDLSPEKQREACRSARCFARVEPAHKSKIV 2320
>ref|XM_001878199.1| Laccaria bicolor S238N-H82 Ca-transporting ATPase partial mRNA
Length = 3042
Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats.
Identities = 75/168 (44%), Positives = 105/168 (62%), Gaps = 3/168 (1%)
Frame = +1
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIPDPKQLDL-SDPA 60
RC ++ +G+ +PLTP + +T+ + +S + LR +A A+R + D S+ +
Sbjct: 1558 RCNSVLV-NGKTIPLTPALRATLLDRT--VSYGSNGLRTLALAYRNVQDVDSAHYRSESS 1728
Query: 61 K-FEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGL 119
K + E DLTFV + GMLDPPR EV EA+ C AGIRVI ITGD K TAE +CR+IG+
Sbjct: 1729 KDYARFEQDLTFVSLVGMLDPPRPEVREAVANCKAAGIRVICITGDNKGTAETICRQIGI 1908
Query: 120 MPC-EPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLVN 166
E G S+TG ELD ++ +K AV+ A LFSRT+P HK +LV+
Sbjct: 1909 FDADEDLTGKSYTGRELDALSEEEKIEAVQRASLFSRTEPGHKSKLVD 2052
>gb|U49394.1|MMU49394 Mus musculus sarcoendoplasmic reticulum Ca2+ ATPase SERCA3a mRNA,
complete cds
Length = 3276
Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats.
Identities = 73/167 (43%), Positives = 100/167 (59%), Gaps = 2/167 (1%)
Frame = +2
Query: 1 KRCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIPDPKQ-LDLSDP 59
+RC+ + R PL+ + K+ D LRC+A A R P K+ + L D
Sbjct: 1613 ERCSSVRV-GSRTAPLSTTSREHILAKIRDWGSGSDTLRCLALATRDTPPRKEDMHLDDC 1789
Query: 60 AKFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGL 119
++F ETDLTFVG GMLDPPR EV IT+C AGIRV++ITGD K TA A+CRR+G+
Sbjct: 1790 SRFVQYETDLTFVGCVGMLDPPRPEVAACITRCSRAGIRVVMITGDNKGTAVAICRRLGI 1969
Query: 120 M-PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E G ++TG E D ++P Q+R A R A F+R +P+HK ++V
Sbjct: 1970 FGDTEDVLGKAYTGREFDDLSPEQQRQACRTARCFARVEPAHKSRIV 2110
>gb|U49393.1|MMU49393 Mus musculus sarcoendoplasmic reticulum Ca2+ ATPase SERCA3b mRNA,
complete cds
Length = 3349
Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats.
Identities = 73/167 (43%), Positives = 100/167 (59%), Gaps = 2/167 (1%)
Frame = +2
Query: 1 KRCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIPDPKQ-LDLSDP 59
+RC+ + R PL+ + K+ D LRC+A A R P K+ + L D
Sbjct: 1613 ERCSSVRV-GSRTAPLSTTSREHILAKIRDWGSGSDTLRCLALATRDTPPRKEDMHLDDC 1789
Query: 60 AKFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGL 119
++F ETDLTFVG GMLDPPR EV IT+C AGIRV++ITGD K TA A+CRR+G+
Sbjct: 1790 SRFVQYETDLTFVGCVGMLDPPRPEVAACITRCSRAGIRVVMITGDNKGTAVAICRRLGI 1969
Query: 120 M-PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E G ++TG E D ++P Q+R A R A F+R +P+HK ++V
Sbjct: 1970 FGDTEDVLGKAYTGREFDDLSPEQQRQACRTARCFARVEPAHKSRIV 2110
>gb|BC017639.1| Mus musculus ATPase, Ca++ transporting, ubiquitous, mRNA (cDNA clone
MGC:28920 IMAGE:4924519), complete cds
Length = 4537
Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats.
Identities = 73/167 (43%), Positives = 100/167 (59%), Gaps = 2/167 (1%)
Frame = +1
Query: 1 KRCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIPDPKQ-LDLSDP 59
+RC+ + R PL+ + K+ D LRC+A A R P K+ + L D
Sbjct: 1666 ERCSSVRV-GSRTAPLSTTSREHILAKIRDWGSGSDTLRCLALATRDTPPRKEDMHLDDC 1842
Query: 60 AKFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGL 119
++F ETDLTFVG GMLDPPR EV IT+C AGIRV++ITGD K TA A+CRR+G+
Sbjct: 1843 SRFVQYETDLTFVGCVGMLDPPRPEVAACITRCSRAGIRVVMITGDNKGTAVAICRRLGI 2022
Query: 120 M-PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E G ++TG E D ++P Q+R A R A F+R +P+HK ++V
Sbjct: 2023 FGDTEDVLGKAYTGREFDDLSPEQQRQACRTARCFARVEPAHKSRIV 2163
>gb|BC026147.1| Mus musculus ATPase, Ca++ transporting, ubiquitous, mRNA (cDNA clone
MGC:13968 IMAGE:4191458), complete cds
Length = 4489
Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats.
Identities = 73/167 (43%), Positives = 100/167 (59%), Gaps = 2/167 (1%)
Frame = +3
Query: 1 KRCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIPDPKQ-LDLSDP 59
+RC+ + R PL+ + K+ D LRC+A A R P K+ + L D
Sbjct: 1698 ERCSSVRV-GSRTAPLSTTSREHILAKIRDWGSGSDTLRCLALATRDTPPRKEDMHLDDC 1874
Query: 60 AKFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGL 119
++F ETDLTFVG GMLDPPR EV IT+C AGIRV++ITGD K TA A+CRR+G+
Sbjct: 1875 SRFVQYETDLTFVGCVGMLDPPRPEVAACITRCSRAGIRVVMITGDNKGTAVAICRRLGI 2054
Query: 120 M-PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E G ++TG E D ++P Q+R A R A F+R +P+HK ++V
Sbjct: 2055 FGDTEDVLGKAYTGREFDDLSPEQQRQACRTARCFARVEPAHKSRIV 2195
>dbj|AK089487.1| Mus musculus B6-derived CD11 +ve dendritic cells cDNA, RIKEN
full-length enriched library, clone:F730038P03
product:ATPase, Ca++ transporting, ubiquitous, full
insert sequence
Length = 2966
Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats.
Identities = 73/167 (43%), Positives = 100/167 (59%), Gaps = 2/167 (1%)
Frame = +3
Query: 1 KRCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIPDPKQ-LDLSDP 59
+RC+ + R PL+ + K+ D LRC+A A R P K+ + L D
Sbjct: 1752 ERCSSVRV-GSRTAPLSTTSREHILAKIRDWGSGSDTLRCLALATRDTPPRKEDMHLDDC 1928
Query: 60 AKFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGL 119
++F ETDLTFVG GMLDPPR EV IT+C AGIRV++ITGD K TA A+CRR+G+
Sbjct: 1929 SRFVQYETDLTFVGCVGMLDPPRPEVAACITRCSRAGIRVVMITGDNKGTAVAICRRLGI 2108
Query: 120 M-PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E G ++TG E D ++P Q+R A R A F+R +P+HK ++V
Sbjct: 2109 FGDTEDVLGKAYTGREFDDLSPEQQRQACRTARCFARVEPAHKSRIV 2249
>dbj|AB458821.1| Molgula tectiformis SERCA mRNA for sarcoplasmic reticulum Ca2+ ATPase
Mt-SERCA1a, complete cds
Length = 3849
Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats.
Identities = 71/154 (46%), Positives = 96/154 (62%), Gaps = 2/154 (1%)
Frame = +3
Query: 14 VPLTPKILSTVTTKVNRMSGMEDALRCIAFA-FRPIPDPKQLDLSDPAKFEAIETDLTFV 72
V LT + + KV +D LRC+A P P +DL+D KF E+ +TFV
Sbjct: 1689 VLLTQSMKEDILKKVREYGTGKDTLRCLALGTVDSPPVPATMDLTDSNKFIQYESHITFV 1868
Query: 73 GVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM-PCEPREGLSFT 131
G+ GMLDPPR+EV +AI +C AGIRVIVITGD K TAEA+CRRIG+ E GL++T
Sbjct: 1869 GIVGMLDPPRQEVFDAIQECKKAGIRVIVITGDNKATAEAICRRIGVFDEHEDTTGLAYT 2048
Query: 132 GYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
G E D + +++ A A LF+R +P+HK ++V
Sbjct: 2049 GREFDDLNASEQFEACLRARLFARVEPTHKSKIV 2150
>gb|BC096519.1| Xenopus tropicalis hypothetical protein mgc107776, mRNA (cDNA clone
MGC:107776 IMAGE:7016534), complete cds
Length = 3760
Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats.
Identities = 75/166 (45%), Positives = 98/166 (59%), Gaps = 2/166 (1%)
Frame = +2
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIPDPKQ-LDLSDPA 60
RC + R VPLTP I + T + D LRC+A A R P ++ + L D
Sbjct: 1751 RCNYVRVGTTR-VPLTPAIKDKILTVIKEWGTGRDTLRCLALATRDTPPKREEMVLDDAT 1927
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
KF ETDLTFVG GMLDPPR+EV +I C AGIRVI+ITGD K TA A+CRRIG+
Sbjct: 1928 KFVDYETDLTFVGCVGMLDPPRKEVMGSIKLCREAGIRVIMITGDNKGTAIAICRRIGIF 2107
Query: 121 -PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
+ +FTG E D + P ++R A + A F+R +P+HK ++V
Sbjct: 2108 GEDDDVSRCAFTGREFDDLPPTEQREACKRASCFARVEPTHKSKIV 2245
>dbj|AB458823.1| Molgula tectiformis SERCA mRNA for sarcoplasmic reticulum Ca2+ ATPase
Mt-SERCA2, complete cds
Length = 3493
Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats.
Identities = 72/167 (43%), Positives = 101/167 (60%), Gaps = 2/167 (1%)
Frame = +3
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIP-DPKQLDLSDPA 60
RCT I R L+ + S++ K+ +D LRC+A P +P +++L D +
Sbjct: 1614 RCTHIRIGKER-KELSSNLRSSILEKIREYGTGKDTLRCLALGTIDDPINPDKMNLDDSS 1790
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
KF E +TFVG GMLDPPR+EV AI +C AGIRVIVITGD K TA A+CRRIG+
Sbjct: 1791 KFGDYEKGITFVGAVGMLDPPRKEVKAAIVRCRQAGIRVIVITGDNKATAAAICRRIGIF 1970
Query: 121 -PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLVN 166
E G+++TG E D ++ ++ A A LF+R +PSHK ++V+
Sbjct: 1971 GENENTAGIAYTGREFDDLSEDEQFKACLRARLFARVEPSHKSKIVS 2111
>emb|BX537784.1|HSM805873 Homo sapiens mRNA; cDNA DKFZp779O2152 (from clone DKFZp779O2152);
complete cds
Length = 3622
Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats.
Identities = 76/166 (45%), Positives = 99/166 (59%), Gaps = 2/166 (1%)
Frame = +3
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIPDPKQ-LDLSDPA 60
RC + R VPLT + + + D LRC+A A R P ++ + L D A
Sbjct: 1752 RCNYVRVGTTR-VPLTGPVKEKIMAVIKEWGTGRDTLRCLALATRDTPPKREEMVLDDSA 1928
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
+F ETDLTFVGV GMLDPPR+EVT +I C AGIRVI+ITGD K TA A+CRRIG+
Sbjct: 1929 RFLEYETDLTFVGVVGMLDPPRKEVTGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIF 2108
Query: 121 -PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E ++TG E D + A++R A R A F+R +PSHK ++V
Sbjct: 2109 GENEEVADRAYTGREFDDLPLAEQREACRRACCFARVEPSHKSKIV 2246
>emb|BX647365.1|HSM807510 Homo sapiens mRNA; cDNA DKFZp779M0152 (from clone DKFZp779M0152)
Length = 3518
Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats.
Identities = 76/166 (45%), Positives = 99/166 (59%), Gaps = 2/166 (1%)
Frame = +1
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIPDPKQ-LDLSDPA 60
RC + R VPLT + + + D LRC+A A R P ++ + L D A
Sbjct: 1750 RCNYVRVGTTR-VPLTGPVKEKIMAVIKEWGTGRDTLRCLALATRDTPPKREEMVLDDSA 1926
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
+F ETDLTFVGV GMLDPPR+EVT +I C AGIRVI+ITGD K TA A+CRRIG+
Sbjct: 1927 RFLEYETDLTFVGVVGMLDPPRKEVTGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIF 2106
Query: 121 -PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E ++TG E D + A++R A R A F+R +PSHK ++V
Sbjct: 2107 GENEEVADRAYTGREFDDLPLAEQREACRRACCFARVEPSHKSKIV 2244
>ref|XM_510905.2| PREDICTED: Pan troglodytes ATPase, Ca++ transporting, fast twitch 1,
transcript variant 2 (ATP2A1), mRNA
Length = 3910
Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats.
Identities = 76/166 (45%), Positives = 99/166 (59%), Gaps = 2/166 (1%)
Frame = +2
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIPDPKQ-LDLSDPA 60
RC + R VPLT + + + D LRC+A A R P ++ + L D A
Sbjct: 2366 RCNYVRVGTTR-VPLTGPVKEKIMAVIKEWGTGRDTLRCLALATRDTPPKREEMVLDDSA 2542
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
+F ETDLTFVGV GMLDPPR+EVT +I C AGIRVI+ITGD K TA A+CRRIG+
Sbjct: 2543 RFLEYETDLTFVGVVGMLDPPRKEVTGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIF 2722
Query: 121 -PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E ++TG E D + A++R A R A F+R +PSHK ++V
Sbjct: 2723 GENEEVADRAYTGREFDDLPLAEQREACRRACCFARVEPSHKSKIV 2860
>ref|XM_001142958.1| PREDICTED: Pan troglodytes ATPase, Ca++ transporting, fast twitch 1,
transcript variant 1 (ATP2A1), mRNA
Length = 4637
Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats.
Identities = 76/166 (45%), Positives = 99/166 (59%), Gaps = 2/166 (1%)
Frame = +2
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIPDPKQ-LDLSDPA 60
RC + R VPLT + + + D LRC+A A R P ++ + L D A
Sbjct: 2366 RCNYVRVGTTR-VPLTGPVKEKIMAVIKEWGTGRDTLRCLALATRDTPPKREEMVLDDSA 2542
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
+F ETDLTFVGV GMLDPPR+EVT +I C AGIRVI+ITGD K TA A+CRRIG+
Sbjct: 2543 RFLEYETDLTFVGVVGMLDPPRKEVTGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIF 2722
Query: 121 -PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E ++TG E D + A++R A R A F+R +PSHK ++V
Sbjct: 2723 GENEEVADRAYTGREFDDLPLAEQREACRRACCFARVEPSHKSKIV 2860
>emb|BX647367.1|HSM807512 Homo sapiens mRNA; cDNA DKFZp779A1459 (from clone DKFZp779A1459)
Length = 3511
Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats.
Identities = 76/166 (45%), Positives = 99/166 (59%), Gaps = 2/166 (1%)
Frame = +2
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIPDPKQ-LDLSDPA 60
RC + R VPLT + + + D LRC+A A R P ++ + L D A
Sbjct: 1754 RCNYVRVGTTR-VPLTGPVKEKIMAVIKEWGTGRDTLRCLALATRDTPPKREEMVLDDSA 1930
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
+F ETDLTFVGV GMLDPPR+EVT +I C AGIRVI+ITGD K TA A+CRRIG+
Sbjct: 1931 RFLEYETDLTFVGVVGMLDPPRKEVTGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIF 2110
Query: 121 -PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E ++TG E D + A++R A R A F+R +PSHK ++V
Sbjct: 2111 GENEEVADRAYTGREFDDLPLAEQREACRRACCFARVEPSHKSKIV 2248
>dbj|AK291314.1| Homo sapiens cDNA FLJ75328 complete cds, highly similar to Homo
sapiens ATPase, Ca++ transporting, cardiac muscle, fast
twitch1 (ATP2A1), transcript variant b, mRNA
Length = 3413
Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats.
Identities = 76/166 (45%), Positives = 99/166 (59%), Gaps = 2/166 (1%)
Frame = +3
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIPDPKQ-LDLSDPA 60
RC + R VPLT + + + D LRC+A A R P ++ + L D A
Sbjct: 1683 RCNYVRVGTTR-VPLTGPVKEKIMAVIKEWGTGRDTLRCLALATRDTPPKREEMVLDDSA 1859
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
+F ETDLTFVGV GMLDPPR+EVT +I C AGIRVI+ITGD K TA A+CRRIG+
Sbjct: 1860 RFLEYETDLTFVGVVGMLDPPRKEVTGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIF 2039
Query: 121 -PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E ++TG E D + A++R A R A F+R +PSHK ++V
Sbjct: 2040 GENEEVADRAYTGREFDDLPLAEQREACRRACCFARVEPSHKSKIV 2177
>gb|BC148653.1| Synthetic construct Homo sapiens clone IMAGE:100015644, MGC:183142
ATPase, Ca++ transporting, cardiac muscle, fast twitch 1
(ATP2A1) mRNA, encodes complete protein
Length = 3067
Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats.
Identities = 76/166 (45%), Positives = 99/166 (59%), Gaps = 2/166 (1%)
Frame = +2
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIPDPKQ-LDLSDPA 60
RC + R VPLT + + + D LRC+A A R P ++ + L D A
Sbjct: 1604 RCNYVRVGTTR-VPLTGPVKEKIMAVIKEWGTGRDTLRCLALATRDTPPKREEMVLDDSA 1780
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
+F ETDLTFVGV GMLDPPR+EVT +I C AGIRVI+ITGD K TA A+CRRIG+
Sbjct: 1781 RFLEYETDLTFVGVVGMLDPPRKEVTGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIF 1960
Query: 121 -PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E ++TG E D + A++R A R A F+R +PSHK ++V
Sbjct: 1961 GENEEVADRAYTGREFDDLPLAEQREACRRACCFARVEPSHKSKIV 2098
>dbj|AK128456.1| Homo sapiens cDNA FLJ46599 fis, clone THYMU3047115, highly similar to
Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 (EC
3.6.3.8)
Length = 3130
Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats.
Identities = 76/166 (45%), Positives = 99/166 (59%), Gaps = 2/166 (1%)
Frame = +1
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIPDPKQ-LDLSDPA 60
RC + R VPLT + + + D LRC+A A R P ++ + L D A
Sbjct: 1393 RCNYVRVGTTR-VPLTGPVKEKIMAVIKEWGTGRDTLRCLALATRDTPPKREEMVLDDSA 1569
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
+F ETDLTFVGV GMLDPPR+EVT +I C AGIRVI+ITGD K TA A+CRRIG+
Sbjct: 1570 RFLEYETDLTFVGVVGMLDPPRKEVTGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIF 1749
Query: 121 -PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E ++TG E D + A++R A R A F+R +PSHK ++V
Sbjct: 1750 GENEEVADRAYTGREFDDLPLAEQREACRRACCFARVEPSHKSKIV 1887
>ref|NM_173201.2| Homo sapiens ATPase, Ca++ transporting, cardiac muscle, fast twitch 1
(ATP2A1), transcript variant a, mRNA
Length = 3528
Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats.
Identities = 76/166 (45%), Positives = 99/166 (59%), Gaps = 2/166 (1%)
Frame = +2
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIPDPKQ-LDLSDPA 60
RC + R VPLT + + + D LRC+A A R P ++ + L D A
Sbjct: 1754 RCNYVRVGTTR-VPLTGPVKEKIMAVIKEWGTGRDTLRCLALATRDTPPKREEMVLDDSA 1930
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
+F ETDLTFVGV GMLDPPR+EVT +I C AGIRVI+ITGD K TA A+CRRIG+
Sbjct: 1931 RFLEYETDLTFVGVVGMLDPPRKEVTGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIF 2110
Query: 121 -PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E ++TG E D + A++R A R A F+R +PSHK ++V
Sbjct: 2111 GENEEVADRAYTGREFDDLPLAEQREACRRACCFARVEPSHKSKIV 2248
>ref|NM_004320.3| Homo sapiens ATPase, Ca++ transporting, cardiac muscle, fast twitch 1
(ATP2A1), transcript variant b, mRNA
Length = 3570
Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats.
Identities = 76/166 (45%), Positives = 99/166 (59%), Gaps = 2/166 (1%)
Frame = +2
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIPDPKQ-LDLSDPA 60
RC + R VPLT + + + D LRC+A A R P ++ + L D A
Sbjct: 1754 RCNYVRVGTTR-VPLTGPVKEKIMAVIKEWGTGRDTLRCLALATRDTPPKREEMVLDDSA 1930
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
+F ETDLTFVGV GMLDPPR+EVT +I C AGIRVI+ITGD K TA A+CRRIG+
Sbjct: 1931 RFLEYETDLTFVGVVGMLDPPRKEVTGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIF 2110
Query: 121 -PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E ++TG E D + A++R A R A F+R +PSHK ++V
Sbjct: 2111 GENEEVADRAYTGREFDDLPLAEQREACRRACCFARVEPSHKSKIV 2248
>emb|BX647366.1|HSM807511 Homo sapiens mRNA; cDNA DKFZp779N0852 (from clone DKFZp779N0852)
Length = 3503
Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats.
Identities = 76/166 (45%), Positives = 99/166 (59%), Gaps = 2/166 (1%)
Frame = +3
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIPDPKQ-LDLSDPA 60
RC + R VPLT + + + D LRC+A A R P ++ + L D A
Sbjct: 1746 RCNYVRVGTTR-VPLTGPVKEKIMAVIKEWGTGRDTLRCLALATRDTPPKREEMVLDDSA 1922
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
+F ETDLTFVGV GMLDPPR+EVT +I C AGIRVI+ITGD K TA A+CRRIG+
Sbjct: 1923 RFLEYETDLTFVGVVGMLDPPRKEVTGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIF 2102
Query: 121 -PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E ++TG E D + A++R A R A F+R +PSHK ++V
Sbjct: 2103 GENEEVADRAYTGREFDDLPLAEQREACRRACCFARVEPSHKSKIV 2240
>ref|XM_854843.1| PREDICTED: Canis familiaris similar to ATPase, Ca++ transporting,
cardiac muscle, fast twitch 1, transcript variant 9
(LOC479797), mRNA
Length = 3961
Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats.
Identities = 75/166 (45%), Positives = 100/166 (60%), Gaps = 2/166 (1%)
Frame = +1
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIPDPKQ-LDLSDPA 60
RC + R VP+T + + + + D LRC+A A R P ++ + L D A
Sbjct: 1738 RCNYVRVGTTR-VPMTGPVKDKILSVIKEWGTGRDTLRCLALATRDTPPKREEMILDDSA 1914
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
+F ETDLTFVGV GMLDPPR+EVT +I C AGIRVI+ITGD K TA A+CRRIG+
Sbjct: 1915 RFMEYETDLTFVGVVGMLDPPRKEVTGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIF 2094
Query: 121 -PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E ++TG E D + A++R A R A F+R +PSHK ++V
Sbjct: 2095 GENEEVADRAYTGREFDDLPLAEQREACRRACCFARVEPSHKSKIV 2232
>gb|BC168245.1| Rattus norvegicus ATPase, Ca++ transporting, cardiac muscle, fast
twitch 1, mRNA (cDNA clone MGC:188378 IMAGE:7935496),
complete cds
Length = 3561
Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats.
Identities = 76/166 (45%), Positives = 99/166 (59%), Gaps = 2/166 (1%)
Frame = +2
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIPDPKQ-LDLSDPA 60
RC + R VPLT + + + + D LRC+A A R P ++ + L D A
Sbjct: 1748 RCNYVRVGTTR-VPLTGPVKEKIMSVIKEWGTGRDTLRCLALATRDTPPKREEMVLDDSA 1924
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
KF E DLTFVGV GMLDPPR+EVT +I C AGIRVI+ITGD K TA A+CRRIG+
Sbjct: 1925 KFMEYEMDLTFVGVVGMLDPPRKEVTGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIF 2104
Query: 121 P-CEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E ++TG E D + A++R A R A F+R +PSHK ++V
Sbjct: 2105 SENEEVADRAYTGREFDDLPLAEQREACRRACCFARVEPSHKSKIV 2242
>gb|M99223.1|RATCTA Rattus norvegicus calcium transporting ATPase mRNA, complete cds
Length = 3457
Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats.
Identities = 76/166 (45%), Positives = 99/166 (59%), Gaps = 2/166 (1%)
Frame = +1
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIPDPKQ-LDLSDPA 60
RC + R VPLT + + + + D LRC+A A R P ++ + L D A
Sbjct: 1735 RCNYVRVGTTR-VPLTGPVKEKIMSVIKEWGTGRDTLRCLALATRDTPPKREEMVLDDSA 1911
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
KF E DLTFVGV GMLDPPR+EVT +I C AGIRVI+ITGD K TA A+CRRIG+
Sbjct: 1912 KFMEYEMDLTFVGVVGMLDPPRKEVTGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIF 2091
Query: 121 P-CEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E ++TG E D + A++R A R A F+R +PSHK ++V
Sbjct: 2092 SENEEVADRAYTGREFDDLPLAEQREACRRACCFARVEPSHKSKIV 2229
>gb|AY081946.1| Mus musculus calcium-transporting ATPase (Atp2a1) mRNA, complete cds
Length = 3471
Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats.
Identities = 76/166 (45%), Positives = 99/166 (59%), Gaps = 2/166 (1%)
Frame = +3
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIPDPKQ-LDLSDPA 60
RC + R VPLT + + + + D LRC+A A R P ++ + L D A
Sbjct: 1752 RCNYVRVGTTR-VPLTGPVKEKIMSVIKEWGTGRDTLRCLALATRDTPPKREEMVLDDSA 1928
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
KF E DLTFVGV GMLDPPR+EVT +I C AGIRVI+ITGD K TA A+CRRIG+
Sbjct: 1929 KFMEYEMDLTFVGVVGMLDPPRKEVTGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIF 2108
Query: 121 P-CEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E ++TG E D + A++R A R A F+R +PSHK ++V
Sbjct: 2109 SENEEVTDRAYTGREFDDLPLAEQREACRRACCFARVEPSHKSKIV 2246
>gb|BC036292.1| Mus musculus ATPase, Ca++ transporting, cardiac muscle, fast twitch
1, mRNA (cDNA clone MGC:28518 IMAGE:4191741), complete
cds
Length = 3486
Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats.
Identities = 76/166 (45%), Positives = 99/166 (59%), Gaps = 2/166 (1%)
Frame = +2
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIPDPKQ-LDLSDPA 60
RC + R VPLT + + + + D LRC+A A R P ++ + L D A
Sbjct: 1721 RCNYVRVGTTR-VPLTGPVKEKIMSVIKEWGTGRDTLRCLALATRDTPPKREEMVLDDSA 1897
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
KF E DLTFVGV GMLDPPR+EVT +I C AGIRVI+ITGD K TA A+CRRIG+
Sbjct: 1898 KFMEYEMDLTFVGVVGMLDPPRKEVTGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIF 2077
Query: 121 P-CEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E ++TG E D + A++R A R A F+R +PSHK ++V
Sbjct: 2078 SENEEVTDRAYTGREFDDLPLAEQREACRRACCFARVEPSHKSKIV 2215
>dbj|AK155904.1| Mus musculus B6-derived CD11 +ve dendritic cells cDNA, RIKEN
full-length enriched library, clone:F730317H14
product:ATPase, Ca++ transporting, ubiquitous, full
insert sequence
Length = 3184
Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats.
Identities = 73/167 (43%), Positives = 100/167 (59%), Gaps = 2/167 (1%)
Frame = +1
Query: 1 KRCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIPDPKQ-LDLSDP 59
+RC+ + R PL+ + K+ D LRC+A A R P K+ + L D
Sbjct: 1753 ERCSSVRV-GSRTAPLSTTPREHILAKIRDWGSGSDTLRCLALATRDTPPRKEDMHLDDC 1929
Query: 60 AKFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGL 119
++F ETDLTFVG GMLDPPR EV IT+C AGIRV++ITGD K TA A+CRR+G+
Sbjct: 1930 SRFVQYETDLTFVGCVGMLDPPRPEVAACITRCSRAGIRVVMITGDNKGTAVAICRRLGI 2109
Query: 120 M-PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E G ++TG E D ++P Q+R A R A F+R +P+HK ++V
Sbjct: 2110 FGDTEDVLGKAYTGREFDDLSPEQQRQACRTARCFARVEPAHKSRIV 2250
>ref|XM_854707.1| PREDICTED: Canis familiaris similar to ATPase, Ca++ transporting,
cardiac muscle, fast twitch 1, transcript variant 5
(LOC479797), mRNA
Length = 2678
Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats.
Identities = 75/166 (45%), Positives = 100/166 (60%), Gaps = 2/166 (1%)
Frame = +2
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIPDPKQ-LDLSDPA 60
RC + R VP+T + + + + D LRC+A A R P ++ + L D A
Sbjct: 455 RCNYVRVGTTR-VPMTGPVKDKILSVIKEWGTGRDTLRCLALATRDTPPKREEMILDDSA 631
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
+F ETDLTFVGV GMLDPPR+EVT +I C AGIRVI+ITGD K TA A+CRRIG+
Sbjct: 632 RFMEYETDLTFVGVVGMLDPPRKEVTGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIF 811
Query: 121 -PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E ++TG E D + A++R A R A F+R +PSHK ++V
Sbjct: 812 GENEEVADRAYTGREFDDLPLAEQREACRRACCFARVEPSHKSKIV 949
>ref|XM_855027.1| PREDICTED: Canis familiaris similar to ATPase, Ca++ transporting,
cardiac muscle, fast twitch 1, transcript variant 13
(LOC479797), mRNA
Length = 3493
Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats.
Identities = 75/166 (45%), Positives = 100/166 (60%), Gaps = 2/166 (1%)
Frame = +1
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIPDPKQ-LDLSDPA 60
RC + R VP+T + + + + D LRC+A A R P ++ + L D A
Sbjct: 1744 RCNYVRVGTTR-VPMTGPVKDKILSVIKEWGTGRDTLRCLALATRDTPPKREEMILDDSA 1920
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
+F ETDLTFVGV GMLDPPR+EVT +I C AGIRVI+ITGD K TA A+CRRIG+
Sbjct: 1921 RFMEYETDLTFVGVVGMLDPPRKEVTGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIF 2100
Query: 121 -PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E ++TG E D + A++R A R A F+R +PSHK ++V
Sbjct: 2101 GENEEVADRAYTGREFDDLPLAEQREACRRACCFARVEPSHKSKIV 2238
>ref|XM_854994.1| PREDICTED: Canis familiaris similar to ATPase, Ca++ transporting,
cardiac muscle, fast twitch 1, transcript variant 12
(LOC479797), mRNA
Length = 3720
Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats.
Identities = 75/166 (45%), Positives = 100/166 (60%), Gaps = 2/166 (1%)
Frame = +3
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIPDPKQ-LDLSDPA 60
RC + R VP+T + + + + D LRC+A A R P ++ + L D A
Sbjct: 1497 RCNYVRVGTTR-VPMTGPVKDKILSVIKEWGTGRDTLRCLALATRDTPPKREEMILDDSA 1673
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
+F ETDLTFVGV GMLDPPR+EVT +I C AGIRVI+ITGD K TA A+CRRIG+
Sbjct: 1674 RFMEYETDLTFVGVVGMLDPPRKEVTGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIF 1853
Query: 121 -PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E ++TG E D + A++R A R A F+R +PSHK ++V
Sbjct: 1854 GENEEVADRAYTGREFDDLPLAEQREACRRACCFARVEPSHKSKIV 1991
>ref|XM_536925.2| PREDICTED: Canis familiaris similar to ATPase, Ca++ transporting,
cardiac muscle, fast twitch 1, transcript variant 1
(LOC479797), mRNA
Length = 4190
Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats.
Identities = 75/166 (45%), Positives = 100/166 (60%), Gaps = 2/166 (1%)
Frame = +2
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIPDPKQ-LDLSDPA 60
RC + R VP+T + + + + D LRC+A A R P ++ + L D A
Sbjct: 1967 RCNYVRVGTTR-VPMTGPVKDKILSVIKEWGTGRDTLRCLALATRDTPPKREEMILDDSA 2143
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
+F ETDLTFVGV GMLDPPR+EVT +I C AGIRVI+ITGD K TA A+CRRIG+
Sbjct: 2144 RFMEYETDLTFVGVVGMLDPPRKEVTGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIF 2323
Query: 121 -PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E ++TG E D + A++R A R A F+R +PSHK ++V
Sbjct: 2324 GENEEVADRAYTGREFDDLPLAEQREACRRACCFARVEPSHKSKIV 2461
>ref|XM_854810.1| PREDICTED: Canis familiaris similar to ATPase, Ca++ transporting,
cardiac muscle, fast twitch 1, transcript variant 8
(LOC479797), mRNA
Length = 3940
Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats.
Identities = 75/166 (45%), Positives = 100/166 (60%), Gaps = 2/166 (1%)
Frame = +1
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIPDPKQ-LDLSDPA 60
RC + R VP+T + + + + D LRC+A A R P ++ + L D A
Sbjct: 1717 RCNYVRVGTTR-VPMTGPVKDKILSVIKEWGTGRDTLRCLALATRDTPPKREEMILDDSA 1893
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
+F ETDLTFVGV GMLDPPR+EVT +I C AGIRVI+ITGD K TA A+CRRIG+
Sbjct: 1894 RFMEYETDLTFVGVVGMLDPPRKEVTGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIF 2073
Query: 121 -PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E ++TG E D + A++R A R A F+R +PSHK ++V
Sbjct: 2074 GENEEVADRAYTGREFDDLPLAEQREACRRACCFARVEPSHKSKIV 2211
>ref|XM_844684.1| PREDICTED: Canis familiaris similar to ATPase, Ca++ transporting,
cardiac muscle, fast twitch 1, transcript variant 3
(LOC479797), mRNA
Length = 3967
Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats.
Identities = 75/166 (45%), Positives = 100/166 (60%), Gaps = 2/166 (1%)
Frame = +1
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIPDPKQ-LDLSDPA 60
RC + R VP+T + + + + D LRC+A A R P ++ + L D A
Sbjct: 1744 RCNYVRVGTTR-VPMTGPVKDKILSVIKEWGTGRDTLRCLALATRDTPPKREEMILDDSA 1920
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
+F ETDLTFVGV GMLDPPR+EVT +I C AGIRVI+ITGD K TA A+CRRIG+
Sbjct: 1921 RFMEYETDLTFVGVVGMLDPPRKEVTGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIF 2100
Query: 121 -PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E ++TG E D + A++R A R A F+R +PSHK ++V
Sbjct: 2101 GENEEVADRAYTGREFDDLPLAEQREACRRACCFARVEPSHKSKIV 2238
>emb|X63009.1|RESERCA1 R.esculenta mRNA for SERCa1 fast sceletal muscle Ca-ATPase
Length = 3808
Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats.
Identities = 77/167 (46%), Positives = 100/167 (59%), Gaps = 3/167 (1%)
Frame = +3
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIPDPKQLD--LSDP 59
RC + R VPLT I + + V D LRC+A A R P PK+ D L +
Sbjct: 1797 RCNYVRVGTTR-VPLTSAIKDKILSVVKEWGTGRDTLRCLALATRDTP-PKREDMVLDEA 1970
Query: 60 AKFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGL 119
+F ETDLTFVG GMLDPPR+EV +I C AGIRVI+ITGD K TA A+CRRIG+
Sbjct: 1971 TRFIEYETDLTFVGCVGMLDPPRKEVMGSIQLCREAGIRVIMITGDNKGTAIAICRRIGI 2150
Query: 120 M-PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
+ G +FTG E D + PA++R A + A F+R +P+HK ++V
Sbjct: 2151 FGEDDDVSGRAFTGREFDDLPPAEQREACKRASCFARVEPAHKSKIV 2291
>emb|X72713.1|AFATPASE A.franciscana mRNA for Sarco/endoplasmic reticulum Ca-ATPase
Length = 2698
Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats.
Identities = 80/167 (47%), Positives = 106/167 (63%), Gaps = 3/167 (1%)
Frame = +1
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGM-EDALRCIAFA-FRPIPDPKQLDLSDP 59
RCT + + VP+TP I+ + +V R G D LRC+A A DPK +D+ D
Sbjct: 523 RCTHVRVGTKK-VPMTPAIMDKIL-EVTRAYGTGRDTLRCLALATIDDPMDPKDMDIIDS 696
Query: 60 AKFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGL 119
KF E + TFVGV GMLDPPR+EV +AI +C AGIRVIVITGD K TAEA+CRRIG+
Sbjct: 697 TKFVKYEQNCTFVGVVGMLDPPRKEVLDAIERCRAAGIRVIVITGDNKATAEAICRRIGV 876
Query: 120 M-PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E EG+++TG E D ++ +R AV + LF+R +P HK ++V
Sbjct: 877 FGEDENTEGMAYTGREFDDLSVEGQRDAVARSRLFARVEPFHKSKIV 1017
>ref|XM_001334026.1| PREDICTED: Danio rerio similar to LOC495046 protein (LOC562640), mRNA
Length = 3790
Score = 132 bits (333), Expect = 3e-29, Method: Composition-based stats.
Identities = 73/173 (42%), Positives = 101/173 (58%), Gaps = 8/173 (4%)
Frame = +1
Query: 1 KRCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFR-PIPDPKQLDLSDP 59
+RC I G VPL+ + + + V D LRC+A A R PDP+ L+L +
Sbjct: 1549 ERCRWIRVSGGTRVPLSSDLREQLLSTVREWGSGRDTLRCLAMATRDSPPDPRTLNLENS 1728
Query: 60 AKFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGL 119
A F E+DLTFVG GMLDPPR+EV A+ C AGIRVI+ITGD K TA ++CR++G+
Sbjct: 1729 AAFSEYESDLTFVGCVGMLDPPRKEVLNAVRMCRQAGIRVIMITGDNKGTALSICRQVGI 1908
Query: 120 MPCEPRE-------GLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
+ + E G TG E D++ P +R A R A F+R +P+HK ++V
Sbjct: 1909 ITEQEEEEAEGGLYGSGLTGREFDELPPHLQRQACRTARCFARVEPTHKSRIV 2067
>ref|XM_679135.2| PREDICTED: Danio rerio similar to LOC495046 protein, transcript
variant 1 (LOC562640), mRNA
Length = 3808
Score = 132 bits (333), Expect = 3e-29, Method: Composition-based stats.
Identities = 73/173 (42%), Positives = 101/173 (58%), Gaps = 8/173 (4%)
Frame = +1
Query: 1 KRCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFR-PIPDPKQLDLSDP 59
+RC I G VPL+ + + + V D LRC+A A R PDP+ L+L +
Sbjct: 1567 ERCRWIRVSGGTRVPLSSDLREQLLSTVREWGSGRDTLRCLAMATRDSPPDPRTLNLENS 1746
Query: 60 AKFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGL 119
A F E+DLTFVG GMLDPPR+EV A+ C AGIRVI+ITGD K TA ++CR++G+
Sbjct: 1747 AAFSEYESDLTFVGCVGMLDPPRKEVLNAVRMCRQAGIRVIMITGDNKGTALSICRQVGI 1926
Query: 120 MPCEPRE-------GLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
+ + E G TG E D++ P +R A R A F+R +P+HK ++V
Sbjct: 1927 ITEQEEEEAEGGLYGSGLTGREFDELPPHLQRQACRTARCFARVEPTHKSRIV 2085
>emb|Z11500.1|FCCA2ATPM Felis catus mRNA for sarcoplasmic reticulum slow-twitch Ca2+ ATPase
Length = 3953
Score = 132 bits (333), Expect = 3e-29, Method: Composition-based stats.
Identities = 74/166 (44%), Positives = 100/166 (60%), Gaps = 2/166 (1%)
Frame = +1
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIP-DPKQLDLSDPA 60
RCT I + VP+TP + V + + D LRC+A A P ++++L D A
Sbjct: 1723 RCTHIRVGSTK-VPMTPGVKQKVMSVIREWGSGSDTLRCLALATHDNPLRREEMNLEDSA 1899
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
F ET+LTFVG GMLDPPR EV ++ C AGIRVI+ITGD K TA A+CRRIG+
Sbjct: 1900 NFIKYETNLTFVGCVGMLDPPRIEVASSVKLCRQAGIRVIMITGDNKGTAVAICRRIGIF 2079
Query: 121 -PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E +FTG E D+++P+ +R A NA F+R +PSHK ++V
Sbjct: 2080 GQDEDVTSKAFTGREFDELSPSAQRDACLNARCFARVEPSHKSKIV 2217
>gb|EU136187.1| Canis lupus familiaris cardiac calcium pump mRNA, complete cds
Length = 2994
Score = 132 bits (333), Expect = 3e-29, Method: Composition-based stats.
Identities = 74/166 (44%), Positives = 100/166 (60%), Gaps = 2/166 (1%)
Frame = +1
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIP-DPKQLDLSDPA 60
RCT I + VP+TP + V + + D LRC+A A P ++++L D A
Sbjct: 1567 RCTHIRVGSTK-VPMTPGVKQKVMSVIREWGSGSDTLRCLALATHDNPLRREEMNLEDSA 1743
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
F ET+LTFVG GMLDPPR EV ++ C AGIRVI+ITGD K TA A+CRRIG+
Sbjct: 1744 NFIKYETNLTFVGCVGMLDPPRIEVASSVKLCRQAGIRVIMITGDNKGTAVAICRRIGIF 1923
Query: 121 -PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E +FTG E D+++P+ +R A NA F+R +PSHK ++V
Sbjct: 1924 GQDEDVTSKAFTGREFDELSPSAQRDACLNARCFARVEPSHKSKIV 2061
>gb|U94345.1|CFU94345 Canis familiaris sarcoplasmic reticulum Ca2+-transport ATPase isoform
(SERCA2a) mRNA, complete cds
Length = 4033
Score = 132 bits (333), Expect = 3e-29, Method: Composition-based stats.
Identities = 74/166 (44%), Positives = 100/166 (60%), Gaps = 2/166 (1%)
Frame = +3
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIP-DPKQLDLSDPA 60
RCT I + VP+TP + V + + D LRC+A A P ++++L D A
Sbjct: 1770 RCTHIRVGSTK-VPMTPGVKQKVMSVIREWGSGSDTLRCLALATHDNPLRREEMNLEDSA 1946
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
F ET+LTFVG GMLDPPR EV ++ C AGIRVI+ITGD K TA A+CRRIG+
Sbjct: 1947 NFIKYETNLTFVGCVGMLDPPRIEVASSVKLCRQAGIRVIMITGDNKGTAVAICRRIGIF 2126
Query: 121 -PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E +FTG E D+++P+ +R A NA F+R +PSHK ++V
Sbjct: 2127 GQDEDVTSKAFTGREFDELSPSAQRDACLNARCFARVEPSHKSKIV 2264
>ref|XM_612129.3| PREDICTED: Bos taurus ATPase, Ca++ transporting, cardiac muscle, slow
twitch 2, transcript variant 1 (ATP2A2), mRNA
Length = 3952
Score = 132 bits (332), Expect = 3e-29, Method: Composition-based stats.
Identities = 73/166 (43%), Positives = 100/166 (60%), Gaps = 2/166 (1%)
Frame = +1
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIP-DPKQLDLSDPA 60
RCT I + VP+TP + + + + D LRC+A A P ++++L D A
Sbjct: 1735 RCTHIRVGSTK-VPMTPGVKQKIMSVIREWGSGSDTLRCLALATHDNPLRREEMNLEDSA 1911
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
F ET+LTFVG GMLDPPR EV ++ C AGIRVI+ITGD K TA A+CRRIG+
Sbjct: 1912 NFIKYETNLTFVGCVGMLDPPRIEVASSVKLCRQAGIRVIMITGDNKGTAVAICRRIGIF 2091
Query: 121 -PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E +FTG E D+++P+ +R A NA F+R +PSHK ++V
Sbjct: 2092 RQDEDVTAKAFTGREFDELSPSAQREACLNARCFARVEPSHKSKIV 2229
>gb|EF489483.1| Cavia porcellus SERCA3 (ATP2A3) mRNA, partial cds
Length = 1070
Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats.
Identities = 73/167 (43%), Positives = 99/167 (59%), Gaps = 2/167 (1%)
Frame = +1
Query: 1 KRCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIPDPKQ-LDLSDP 59
+RC+ + R PL + K+ D LRC+A A R +P K+ + L D
Sbjct: 517 ERCSSVRV-GSRTAPLDSTSREQILAKIRDWGSGSDTLRCLALATRDVPPRKEDMQLDDC 693
Query: 60 AKFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGL 119
+KF ETDLTFVG GMLDPPR EV I +CH AGIRV++ITGD K TA A+CRR+G+
Sbjct: 694 SKFAQYETDLTFVGCVGMLDPPRPEVAACIVRCHRAGIRVVMITGDNKGTAVAICRRLGI 873
Query: 120 MP-CEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E G ++TG E D ++P Q+R A A F+R +P+HK ++V
Sbjct: 874 FEDSEDVAGKAYTGREFDDLSPEQQRHACLTARCFARVEPAHKSRIV 1014
>ref|XM_002233462.1| Branchiostoma floridae hypothetical protein (BRAFLDRAFT_127845) mRNA,
complete cds
Length = 3862
Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats.
Identities = 71/167 (42%), Positives = 100/167 (59%), Gaps = 2/167 (1%)
Frame = +1
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFA-FRPIPDPKQLDLSDPA 60
RCT + + VPLTP I + D LRC+ A P +++DL D
Sbjct: 1327 RCTHVRVGTTK-VPLTPGIKKQILDIATEYGTGRDTLRCLGLATIDNPPKREEMDLDDSR 1503
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
KF E+++TFVG+ GMLDPPR+EV +I +C+ AGIRVI+ITGD K TA A+CRRIG+
Sbjct: 1504 KFMQYESNMTFVGMVGMLDPPRKEVVASIQECYGAGIRVIMITGDNKLTALAICRRIGIF 1683
Query: 121 -PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLVN 166
E G ++TG E D + P + AA + LF+R +P+HK ++V+
Sbjct: 1684 EEGEDWTGRAYTGREFDDLPPVDQAAATVRSRLFARVEPTHKSKIVD 1824
>gb|BC037354.1| Homo sapiens, Similar to ATPase, Ca++ transporting, cardiac muscle,
fast twitch 1, clone IMAGE:4111479, mRNA, partial cds
Length = 2602
Score = 132 bits (331), Expect = 5e-29, Method: Composition-based stats.
Identities = 76/166 (45%), Positives = 99/166 (59%), Gaps = 2/166 (1%)
Frame = +2
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIPDPKQ-LDLSDPA 60
RC + R VPLT + + + D LRC+A A R P ++ + L D A
Sbjct: 1682 RCNYVRVGTTR-VPLTGPVKEKIMAVIKEWGTGRDTLRCLALATRDTPPKREEMVLDDSA 1858
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
+F ETDLTFVGV GMLDPPR+EVT +I C AGIRVI+ITGD K TA A+CRRIG+
Sbjct: 1859 RFLEYETDLTFVGVVGMLDPPRKEVTGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIF 2038
Query: 121 -PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E ++TG E D + A++R A R A F+R +PSHK ++V
Sbjct: 2039 GENEEVADRAYTGREFDDLPLAEQREACRRACCFARVEPSHKSKIV 2176
>ref|XM_854917.1| PREDICTED: Canis familiaris similar to ATPase, Ca++ transporting,
cardiac muscle, fast twitch 1, transcript variant 11
(LOC479797), mRNA
Length = 3102
Score = 132 bits (331), Expect = 5e-29, Method: Composition-based stats.
Identities = 75/166 (45%), Positives = 100/166 (60%), Gaps = 2/166 (1%)
Frame = +1
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIPDPKQ-LDLSDPA 60
RC + R VP+T + + + + D LRC+A A R P ++ + L D A
Sbjct: 1744 RCNYVRVGTTR-VPMTGPVKDKILSVIKEWGTGRDTLRCLALATRDTPPKREEMILDDSA 1920
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
+F ETDLTFVGV GMLDPPR+EVT +I C AGIRVI+ITGD K TA A+CRRIG+
Sbjct: 1921 RFMEYETDLTFVGVVGMLDPPRKEVTGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIF 2100
Query: 121 -PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E ++TG E D + A++R A R A F+R +PSHK ++V
Sbjct: 2101 GENEEVADRAYTGREFDDLPLAEQREACRRACCFARVEPSHKSKIV 2238
>ref|XM_001502262.2| PREDICTED: Equus caballus similar to ATPase, Ca++ transporting, fast
twitch 1 (LOC100064403), mRNA
Length = 3528
Score = 132 bits (331), Expect = 5e-29, Method: Composition-based stats.
Identities = 76/167 (45%), Positives = 100/167 (59%), Gaps = 3/167 (1%)
Frame = +2
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIPDPKQLD--LSDP 59
RC + R VP+ + + + + D LRC+A A R P PK+ D L D
Sbjct: 1754 RCNYVRVGTTR-VPMAGPVKERILSVIKEWGTGRDTLRCLALATRDTP-PKREDMILDDS 1927
Query: 60 AKFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGL 119
A+F ETDLTF+GV GMLDPPR+EVT +I C AGIRVI+ITGD K TA A+CRRIG+
Sbjct: 1928 ARFMEYETDLTFIGVVGMLDPPRKEVTGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGI 2107
Query: 120 M-PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E ++TG E D + A++R A R A F+R +PSHK ++V
Sbjct: 2108 FGENEEVADRAYTGREFDDLPLAEQREACRRACCFARVEPSHKSKIV 2248
>emb|X51674.1|ASCAATPAS Artemia RNA for Ca-ATPase of sarcoplasmic reticulum
Length = 3299
Score = 132 bits (331), Expect = 5e-29, Method: Composition-based stats.
Identities = 77/166 (46%), Positives = 102/166 (61%), Gaps = 2/166 (1%)
Frame = +1
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFA-FRPIPDPKQLDLSDPA 60
RCT + + VP+TP I+ + D LRC+A A DPK +D+ D
Sbjct: 1660 RCTHVRVGTKK-VPMTPAIMDKILEVTRAYGTGRDTLRCLALATIDDPMDPKDMDIIDST 1836
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
KF E + TFVGV GMLDPPR+EV +AI +C AGIRVIVITGD K TAEA+CRRIG+
Sbjct: 1837 KFVKYEQNCTFVGVVGMLDPPRKEVLDAIERCRAAGIRVIVITGDNKATAEAICRRIGVF 2016
Query: 121 -PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E EG+++TG E D ++ +R AV + LF+R +P HK ++V
Sbjct: 2017 GEDENTEGMAYTGREFDDLSVEGQRDAVARSRLFARVEPFHKSKIV 2154
>gb|U65229.1|MNU65229 Makaira nigricans sarcoplasmic/endoplasmic reticulum calcium ATPase
1B mRNA, complete cds
Length = 3318
Score = 132 bits (331), Expect = 5e-29, Method: Composition-based stats.
Identities = 74/166 (44%), Positives = 96/166 (57%), Gaps = 2/166 (1%)
Frame = +1
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIP-DPKQLDLSDPA 60
RC + R VPLT I + + D LRC+A A R P ++++L D
Sbjct: 1633 RCAYVRVGTTR-VPLTSAIKEKIMAVIRDWGTGRDTLRCLALATRDTPLKVEEMNLEDST 1809
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
KF ETD+TFVG GMLDPPR+EVT +I C AGIRVI+ITGD K TA A+CRRIG+
Sbjct: 1810 KFADYETDMTFVGCVGMLDPPRKEVTGSIELCRDAGIRVIMITGDNKGTAIAICRRIGIF 1989
Query: 121 P-CEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E ++TG E D + + AVR A F+R +PSHK ++V
Sbjct: 1990 KEDEDVSNKAYTGREFDDLPSQDQAEAVRRACCFARVEPSHKSKIV 2127
>emb|X15074.1|SSCATP2 Pig mRNA for endoplasmic-reticulum Ca(2+)-transport ATPase (class 2)
Length = 3972
Score = 132 bits (331), Expect = 5e-29, Method: Composition-based stats.
Identities = 73/166 (43%), Positives = 99/166 (59%), Gaps = 2/166 (1%)
Frame = +2
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIP-DPKQLDLSDPA 60
RCT I + VP+TP + + + + D LRC+A A P ++++L D A
Sbjct: 1580 RCTHIRVGSTK-VPMTPGVKQKIMSVIREWGSGSDTLRCLALATHDNPMRREEMNLEDSA 1756
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
F ET+LTFVG GMLDPPR EV ++ C AGIRVI+ITGD K TA A+CRRIG+
Sbjct: 1757 NFIKYETNLTFVGCVGMLDPPRIEVASSVKLCRQAGIRVIMITGDNKGTAVAICRRIGIF 1936
Query: 121 -PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E +FTG E D++ P+ +R A NA F+R +PSHK ++V
Sbjct: 1937 GQDEDVTSKAFTGREFDELNPSAQREACLNARCFARVEPSHKSKIV 2074
>emb|X15073.1|SSCATP1 Pig mRNA for endoplasmic-reticulum Ca(2+)-transport ATPase (class 1)
Length = 3795
Score = 132 bits (331), Expect = 5e-29, Method: Composition-based stats.
Identities = 73/166 (43%), Positives = 99/166 (59%), Gaps = 2/166 (1%)
Frame = +2
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIP-DPKQLDLSDPA 60
RCT I + VP+TP + + + + D LRC+A A P ++++L D A
Sbjct: 1580 RCTHIRVGSTK-VPMTPGVKQKIMSVIREWGSGSDTLRCLALATHDNPMRREEMNLEDSA 1756
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
F ET+LTFVG GMLDPPR EV ++ C AGIRVI+ITGD K TA A+CRRIG+
Sbjct: 1757 NFIKYETNLTFVGCVGMLDPPRIEVASSVKLCRQAGIRVIMITGDNKGTAVAICRRIGIF 1936
Query: 121 -PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E +FTG E D++ P+ +R A NA F+R +PSHK ++V
Sbjct: 1937 GQDEDVTSKAFTGREFDELNPSAQREACLNARCFARVEPSHKSKIV 2074
>gb|DQ812886.1| Silurus lanzhouensis sarcoendoplasmic reticulum calcium ATPase
(SERCA2) mRNA, partial cds
Length = 2970
Score = 131 bits (330), Expect = 6e-29, Method: Composition-based stats.
Identities = 76/166 (45%), Positives = 98/166 (59%), Gaps = 2/166 (1%)
Frame = +1
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIP-DPKQLDLSDPA 60
RCT + R VPLT I + T + D LRC+A A R P +++ L D
Sbjct: 1558 RCTYVRVGSAR-VPLTGPIKDKILTIIKEWGTGRDTLRCLALATRDSPLKVEEMKLEDAT 1734
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
KF ETDLT VG GMLDPPR+EV+ +I C AGIRVI+ITGD K TA A+CRRIG+
Sbjct: 1735 KFADYETDLTSVGCVGMLDPPRKEVSGSIQLCKDAGIRVIMITGDNKGTAVAICRRIGIF 1914
Query: 121 P-CEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E G ++TG E D + A++ AV A F+R +PSHK ++V
Sbjct: 1915 SEDEDVTGRAYTGREFDDLPRAEQSEAVTRACCFARVEPSHKSKIV 2052
>gb|BC165245.1| Danio rerio ATPase, Ca++ transporting, cardiac muscle, slow twitch
2a, mRNA (cDNA clone MGC:193107 IMAGE:100060730),
complete cds
Length = 3058
Score = 131 bits (330), Expect = 6e-29, Method: Composition-based stats.
Identities = 74/157 (47%), Positives = 96/157 (61%), Gaps = 2/157 (1%)
Frame = +2
Query: 11 GRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIPDPKQ-LDLSDPAKFEAIETDL 69
G VPLT I + + + D LRC+A A R P K+ + LSD A+F E+DL
Sbjct: 1622 GSKVPLTQGIKDKIMSVIREYGTGRDTLRCLALATRDNPLKKEEMVLSDTARFADYESDL 1801
Query: 70 TFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLMPCEPR-EGL 128
TFVG GMLDPPR EV +I C AGIRVI+ITGD K TA A+CRRIG+ + +
Sbjct: 1802 TFVGCVGMLDPPRTEVAASIKLCRHAGIRVIMITGDNKGTAVAICRRIGIFSDDDDVHRM 1981
Query: 129 SFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
+FTG E D ++P +R AV A F+R +PSHK ++V
Sbjct: 1982 AFTGREFDDLSPHAQREAVTVARCFARVEPSHKSKIV 2092
>ref|NM_001110140.2| Mus musculus ATPase, Ca++ transporting, cardiac muscle, slow twitch 2
(Atp2a2), transcript variant 1, mRNA
Length = 5763
Score = 131 bits (330), Expect = 6e-29, Method: Composition-based stats.
Identities = 73/166 (43%), Positives = 99/166 (59%), Gaps = 2/166 (1%)
Frame = +1
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIP-DPKQLDLSDPA 60
RCT I + VP+TP + + + + D LRC+A A P +++ L D A
Sbjct: 2107 RCTHIRVGSTK-VPMTPGVKQKIMSVIREWGSGSDTLRCLALATHDNPLKREEMHLEDSA 2283
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
F ET+LTFVG GMLDPPR EV ++ C AGIRVI+ITGD K TA A+CRRIG+
Sbjct: 2284 NFIKYETNLTFVGCVGMLDPPRIEVASSVKLCRQAGIRVIMITGDNKGTAVAICRRIGIF 2463
Query: 121 -PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E +FTG E D+++P+ +R A NA F+R +PSHK ++V
Sbjct: 2464 GQDEDVTSKAFTGREFDELSPSAQRDACLNARCFARVEPSHKSKIV 2601
>ref|NM_009722.3| Mus musculus ATPase, Ca++ transporting, cardiac muscle, slow twitch 2
(Atp2a2), transcript variant 2, mRNA
Length = 4353
Score = 131 bits (330), Expect = 6e-29, Method: Composition-based stats.
Identities = 73/166 (43%), Positives = 99/166 (59%), Gaps = 2/166 (1%)
Frame = +1
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIP-DPKQLDLSDPA 60
RCT I + VP+TP + + + + D LRC+A A P +++ L D A
Sbjct: 2107 RCTHIRVGSTK-VPMTPGVKQKIMSVIREWGSGSDTLRCLALATHDNPLKREEMHLEDSA 2283
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
F ET+LTFVG GMLDPPR EV ++ C AGIRVI+ITGD K TA A+CRRIG+
Sbjct: 2284 NFIKYETNLTFVGCVGMLDPPRIEVASSVKLCRQAGIRVIMITGDNKGTAVAICRRIGIF 2463
Query: 121 -PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E +FTG E D+++P+ +R A NA F+R +PSHK ++V
Sbjct: 2464 GQDEDVTSKAFTGREFDELSPSAQRDACLNARCFARVEPSHKSKIV 2601
>gb|BC054531.1| Mus musculus ATPase, Ca++ transporting, cardiac muscle, slow twitch
2, mRNA (cDNA clone MGC:62264 IMAGE:6406916), complete
cds
Length = 5422
Score = 131 bits (330), Expect = 6e-29, Method: Composition-based stats.
Identities = 73/166 (43%), Positives = 99/166 (59%), Gaps = 2/166 (1%)
Frame = +2
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIP-DPKQLDLSDPA 60
RCT I + VP+TP + + + + D LRC+A A P +++ L D A
Sbjct: 1766 RCTHIRVGSTK-VPMTPGVKQKIMSVIREWGSGSDTLRCLALATHDNPLKREEMHLEDSA 1942
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
F ET+LTFVG GMLDPPR EV ++ C AGIRVI+ITGD K TA A+CRRIG+
Sbjct: 1943 NFIKYETNLTFVGCVGMLDPPRIEVASSVKLCRQAGIRVIMITGDNKGTAVAICRRIGIF 2122
Query: 121 -PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E +FTG E D+++P+ +R A NA F+R +PSHK ++V
Sbjct: 2123 GQDEDVTSKAFTGREFDELSPSAQRDACLNARCFARVEPSHKSKIV 2260
>gb|BC054748.1| Mus musculus ATPase, Ca++ transporting, cardiac muscle, slow twitch
2, mRNA (cDNA clone MGC:64797 IMAGE:6406916), complete
cds
Length = 5422
Score = 131 bits (330), Expect = 6e-29, Method: Composition-based stats.
Identities = 73/166 (43%), Positives = 99/166 (59%), Gaps = 2/166 (1%)
Frame = +2
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIP-DPKQLDLSDPA 60
RCT I + VP+TP + + + + D LRC+A A P +++ L D A
Sbjct: 1766 RCTHIRVGSTK-VPMTPGVKQKIMSVIREWGSGSDTLRCLALATHDNPLKREEMHLEDSA 1942
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
F ET+LTFVG GMLDPPR EV ++ C AGIRVI+ITGD K TA A+CRRIG+
Sbjct: 1943 NFIKYETNLTFVGCVGMLDPPRIEVASSVKLCRQAGIRVIMITGDNKGTAVAICRRIGIF 2122
Query: 121 -PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E +FTG E D+++P+ +R A NA F+R +PSHK ++V
Sbjct: 2123 GQDEDVTSKAFTGREFDELSPSAQRDACLNARCFARVEPSHKSKIV 2260
>dbj|AK220538.1| Mus musculus mRNA for mKIAA4195 protein
Length = 5665
Score = 131 bits (330), Expect = 6e-29, Method: Composition-based stats.
Identities = 73/166 (43%), Positives = 99/166 (59%), Gaps = 2/166 (1%)
Frame = +1
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIP-DPKQLDLSDPA 60
RCT I + VP+TP + + + + D LRC+A A P +++ L D A
Sbjct: 2056 RCTHIRVGSTK-VPMTPGVKQKIMSVIREWGSGSDTLRCLALATHDNPLKREEMHLEDSA 2232
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
F ET+LTFVG GMLDPPR EV ++ C AGIRVI+ITGD K TA A+CRRIG+
Sbjct: 2233 NFIKYETNLTFVGCVGMLDPPRIEVASSVKLCRQAGIRVIMITGDNKGTAVAICRRIGIF 2412
Query: 121 -PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E +FTG E D+++P+ +R A NA F+R +PSHK ++V
Sbjct: 2413 GQDEDVTSKAFTGREFDELSPSAQRDACLNARCFARVEPSHKSKIV 2550
>gb|BC045327.1| Danio rerio ATPase, Ca++ transporting, cardiac muscle, slow twitch
2a, mRNA (cDNA clone MGC:55380 IMAGE:2601981), complete
cds
Length = 3738
Score = 131 bits (330), Expect = 6e-29, Method: Composition-based stats.
Identities = 74/157 (47%), Positives = 96/157 (61%), Gaps = 2/157 (1%)
Frame = +3
Query: 11 GRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIPDPKQ-LDLSDPAKFEAIETDL 69
G VPLT I + + + D LRC+A A R P K+ + LSD A+F E+DL
Sbjct: 1803 GSKVPLTQGIKDKIMSVIREYGTGRDTLRCLALATRDNPLKKEEMVLSDTARFADYESDL 1982
Query: 70 TFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLMPCEPR-EGL 128
TFVG GMLDPPR EV +I C AGIRVI+ITGD K TA A+CRRIG+ + +
Sbjct: 1983 TFVGCVGMLDPPRTEVAASIKLCRHAGIRVIMITGDNKGTAVAICRRIGIFSDDDDVHRM 2162
Query: 129 SFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
+FTG E D ++P +R AV A F+R +PSHK ++V
Sbjct: 2163 AFTGREFDDLSPHAQREAVTVARCFARVEPSHKSKIV 2273
>emb|AJ223584.1|MUM223584 Mus musculus mRNA for sarco/endoplasmic reticulum Ca2+ -ATPase
(SERCA2)
Length = 3984
Score = 131 bits (330), Expect = 6e-29, Method: Composition-based stats.
Identities = 73/166 (43%), Positives = 99/166 (59%), Gaps = 2/166 (1%)
Frame = +1
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIP-DPKQLDLSDPA 60
RCT I + VP+TP + + + + D LRC+A A P +++ L D A
Sbjct: 1777 RCTHIRVGSTK-VPMTPGVKQKIMSVIREWGSGSDTLRCLALATHDNPLKREEMHLEDSA 1953
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
F ET+LTFVG GMLDPPR EV ++ C AGIRVI+ITGD K TA A+CRRIG+
Sbjct: 1954 NFIKYETNLTFVGCVGMLDPPRIEVASSVKLCRQAGIRVIMITGDNKGTAVAICRRIGIF 2133
Query: 121 -PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E +FTG E D+++P+ +R A NA F+R +PSHK ++V
Sbjct: 2134 GQDEDVTSKAFTGREFDELSPSAQRDACLNARCFARVEPSHKSKIV 2271
>emb|AJ131821.1|MMU131821 Mus musculus mRNA for sarco/endoplasmic reticulum Ca2+ ATPase;
SERCA2b
Length = 4156
Score = 131 bits (330), Expect = 6e-29, Method: Composition-based stats.
Identities = 73/166 (43%), Positives = 99/166 (59%), Gaps = 2/166 (1%)
Frame = +1
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIP-DPKQLDLSDPA 60
RCT I + VP+TP + + + + D LRC+A A P +++ L D A
Sbjct: 1777 RCTHIRVGSTK-VPMTPGVKQKIMSVIREWGSGSDTLRCLALATHDNPLKREEMHLEDSA 1953
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
F ET+LTFVG GMLDPPR EV ++ C AGIRVI+ITGD K TA A+CRRIG+
Sbjct: 1954 NFIKYETNLTFVGCVGMLDPPRIEVASSVKLCRQAGIRVIMITGDNKGTAVAICRRIGIF 2133
Query: 121 -PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E +FTG E D+++P+ +R A NA F+R +PSHK ++V
Sbjct: 2134 GQDEDVTSKAFTGREFDELSPSAQRDACLNARCFARVEPSHKSKIV 2271
>ref|XM_692016.3| PREDICTED: Danio rerio similar to ATPase, Ca++ transporting, fast
twitch 1 (LOC568671), mRNA
Length = 3312
Score = 131 bits (330), Expect = 6e-29, Method: Composition-based stats.
Identities = 72/166 (43%), Positives = 98/166 (59%), Gaps = 2/166 (1%)
Frame = +2
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIPDP-KQLDLSDPA 60
RC + R PLT + + + + D LRC+A A R P ++DL +
Sbjct: 1832 RCQFVRVGKERF-PLTMAVKEELMSTIRDWGTGRDTLRCLALATRDSPPAVDKMDLENAG 2008
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
KF E+ LTFVG GMLDPPR+EV +I C+ AGIRVI+ITGD K TA A+CRRIG+
Sbjct: 2009 KFAEYESSLTFVGCVGMLDPPRKEVIGSIKLCNKAGIRVIMITGDNKGTAVAICRRIGIF 2188
Query: 121 P-CEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E EG ++TG E D + P +R AV+ A F+R +P+HK ++V
Sbjct: 2189 SENEDVEGRAYTGREFDDLAPEAQREAVKRARCFARVEPAHKSKIV 2326
>ref|XM_002192583.1| PREDICTED: Taeniopygia guttata hypothetical protein LOC100227680,
transcript variant 2 (LOC100227680), mRNA
Length = 4468
Score = 131 bits (330), Expect = 6e-29, Method: Composition-based stats.
Identities = 74/166 (44%), Positives = 101/166 (60%), Gaps = 2/166 (1%)
Frame = +2
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIPDPKQ-LDLSDPA 60
RCT + + +I PLTP I + + + D LRC+A A P K+ ++L D +
Sbjct: 1523 RCTHVRVGNAKI-PLTPGIKQKIMSVIREWGTGRDTLRCLALATHDNPPKKEEMNLEDSS 1699
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGL- 119
F ET+LTFVG GMLDPPR EV +I C AGIRVI+ITGD K TA A+CRRIG+
Sbjct: 1700 NFINYETNLTFVGCVGMLDPPRIEVASSIKLCRQAGIRVIMITGDNKGTAVAICRRIGIF 1879
Query: 120 MPCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
+ E +FTG E D+++ A +R A +A F+R +PSHK ++V
Sbjct: 1880 VEDEDVSTKAFTGREFDELSLAAQRDACHHARCFARVEPSHKSKIV 2017
>ref|XM_002192532.1| PREDICTED: Taeniopygia guttata hypothetical protein LOC100227680,
transcript variant 1 (LOC100227680), mRNA
Length = 4549
Score = 131 bits (330), Expect = 6e-29, Method: Composition-based stats.
Identities = 74/166 (44%), Positives = 101/166 (60%), Gaps = 2/166 (1%)
Frame = +2
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIPDPKQ-LDLSDPA 60
RCT + + +I PLTP I + + + D LRC+A A P K+ ++L D +
Sbjct: 1604 RCTHVRVGNAKI-PLTPGIKQKIMSVIREWGTGRDTLRCLALATHDNPPKKEEMNLEDSS 1780
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGL- 119
F ET+LTFVG GMLDPPR EV +I C AGIRVI+ITGD K TA A+CRRIG+
Sbjct: 1781 NFINYETNLTFVGCVGMLDPPRIEVASSIKLCRQAGIRVIMITGDNKGTAVAICRRIGIF 1960
Query: 120 MPCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
+ E +FTG E D+++ A +R A +A F+R +PSHK ++V
Sbjct: 1961 VEDEDVSTKAFTGREFDELSLAAQRDACHHARCFARVEPSHKSKIV 2098
>emb|BX649072.1|HSM809223 Homo sapiens mRNA; cDNA DKFZp779D1050 (from clone DKFZp779D1050)
Length = 3500
Score = 131 bits (330), Expect = 6e-29, Method: Composition-based stats.
Identities = 75/166 (45%), Positives = 98/166 (59%), Gaps = 2/166 (1%)
Frame = +2
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIPDPKQ-LDLSDPA 60
RC + R VPLT + + + D LRC+A A R P ++ + L D A
Sbjct: 1742 RCNYVRVGTTR-VPLTGPVKEKIMAVIKEWGTGRDTLRCLALATRDTPPKREEMVLDDSA 1918
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
+F ET LTFVGV GMLDPPR+EVT +I C AGIRVI+ITGD K TA A+CRRIG+
Sbjct: 1919 RFLEYETGLTFVGVVGMLDPPRKEVTGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIF 2098
Query: 121 -PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E ++TG E D + A++R A R A F+R +PSHK ++V
Sbjct: 2099 GENEEVADRAYTGREFDDLPLAEQREACRRACCFARVEPSHKSKIV 2236
>emb|BX648544.1|HSM808692 Homo sapiens mRNA; cDNA DKFZp779D1555 (from clone DKFZp779D1555)
Length = 3513
Score = 131 bits (330), Expect = 7e-29, Method: Composition-based stats.
Identities = 75/166 (45%), Positives = 98/166 (59%), Gaps = 2/166 (1%)
Frame = +2
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIPDPKQ-LDLSDPA 60
RC + R VPLT + + + D LRC+A A R P ++ + L D A
Sbjct: 1751 RCNYVRVGTTR-VPLTGPVKEKIMAVIKEWGTGRDTLRCLALATRDTPPKREEMVLDDSA 1927
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
+F ETDLTFVGV GMLDPPR+EVT +I C AGIRVI+ITGD TA A+CRRIG+
Sbjct: 1928 RFLEYETDLTFVGVVGMLDPPRKEVTGSIQLCRDAGIRVIMITGDNNGTAIAICRRIGIF 2107
Query: 121 -PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E ++TG E D + A++R A R A F+R +PSHK ++V
Sbjct: 2108 GENEEVADRAYTGREFDDLPLAEQREACRRACCFARVEPSHKSKIV 2245
>emb|BX537389.1|HSM805686 Homo sapiens mRNA; cDNA DKFZp779G2251 (from clone DKFZp779G2251);
complete cds
Length = 3501
Score = 131 bits (330), Expect = 7e-29, Method: Composition-based stats.
Identities = 74/166 (44%), Positives = 98/166 (59%), Gaps = 2/166 (1%)
Frame = +1
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIPDPKQ-LDLSDPA 60
RC + R+ P P + + + D LRC+A A R P ++ + L D A
Sbjct: 1750 RCNYVRVGTTRVPPTGP-VKEKIMAVIKEWGTGRDTLRCLALATRDTPPKREEMVLDDSA 1926
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
+F ETDLTFVGV GMLDPPR+EVT +I C AGIRVI+ITGD K TA A+CRRIG+
Sbjct: 1927 RFLEYETDLTFVGVVGMLDPPRKEVTGSIQLCRDAGIRVIMITGDHKGTAIAICRRIGIF 2106
Query: 121 -PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E ++TG E D + A++R A R A F+R +PSHK ++V
Sbjct: 2107 GENEEVADRAYTGREFDDLPLAEQREACRRACCFARVEPSHKSKIV 2244
>gb|AY650902.1| Arabidopsis thaliana ECA3 mRNA, complete cds
Length = 2994
Score = 131 bits (329), Expect = 8e-29, Method: Composition-based stats.
Identities = 73/166 (43%), Positives = 102/166 (61%), Gaps = 2/166 (1%)
Frame = +1
Query: 2 RCTRIMCK-DGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIPDPKQLDLSDPA 60
RC +I+C DG +VPLT + + ++ S ++ LRC+A AF+ +P +Q D
Sbjct: 1558 RCNKILCNGDGSVVPLTAAGRAELESRF--YSFGDETLRCLALAFKTVPHGQQTISYDN- 1728
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
E DLTF+G+ GMLDPPR EV +A+ C TAGIRVIV+TGD K TAE++CR+IG
Sbjct: 1729 -----ENDLTFIGL-GMLDPPREEVRDAMLACMTAGIRVIVVTGDNKSTAESLCRKIGAF 1890
Query: 121 P-CEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
G+S+T E +++ Q+ A+R LFSR +PSHK LV
Sbjct: 1891 DNLVDFSGMSYTASEFERLPAVQQTLALRRMTLFSRVEPSHKRMLV 2028
>ref|NM_001110823.1| Rattus norvegicus ATPase, Ca++ transporting, cardiac muscle, slow
twitch 2 (Atp2a2), transcript variant 3, mRNA
Length = 7391
Score = 131 bits (329), Expect = 9e-29, Method: Composition-based stats.
Identities = 73/166 (43%), Positives = 99/166 (59%), Gaps = 2/166 (1%)
Frame = +3
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIP-DPKQLDLSDPA 60
RCT I + VP+TP + + + + D LRC+A A P +++ L D A
Sbjct: 2073 RCTHIRVGSTK-VPMTPGVKQKIMSVIREWGSGSDTLRCLALATHDNPLRREEMHLEDSA 2249
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
F ET+LTFVG GMLDPPR EV ++ C AGIRVI+ITGD K TA A+CRRIG+
Sbjct: 2250 NFIKYETNLTFVGCVGMLDPPRIEVASSVKLCRQAGIRVIMITGDNKGTAVAICRRIGIF 2429
Query: 121 -PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E +FTG E D+++P+ +R A NA F+R +PSHK ++V
Sbjct: 2430 GQDEDVTSKAFTGREFDELSPSAQRDACLNARCFARVEPSHKSKIV 2567
>ref|NM_001110139.2| Rattus norvegicus ATPase, Ca++ transporting, cardiac muscle, slow
twitch 2 (Atp2a2), transcript variant 2, mRNA
Length = 4303
Score = 131 bits (329), Expect = 9e-29, Method: Composition-based stats.
Identities = 73/166 (43%), Positives = 99/166 (59%), Gaps = 2/166 (1%)
Frame = +3
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIP-DPKQLDLSDPA 60
RCT I + VP+TP + + + + D LRC+A A P +++ L D A
Sbjct: 2073 RCTHIRVGSTK-VPMTPGVKQKIMSVIREWGSGSDTLRCLALATHDNPLRREEMHLEDSA 2249
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
F ET+LTFVG GMLDPPR EV ++ C AGIRVI+ITGD K TA A+CRRIG+
Sbjct: 2250 NFIKYETNLTFVGCVGMLDPPRIEVASSVKLCRQAGIRVIMITGDNKGTAVAICRRIGIF 2429
Query: 121 -PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E +FTG E D+++P+ +R A NA F+R +PSHK ++V
Sbjct: 2430 GQDEDVTSKAFTGREFDELSPSAQRDACLNARCFARVEPSHKSKIV 2567
>ref|NM_017290.3| Rattus norvegicus ATPase, Ca++ transporting, cardiac muscle, slow
twitch 2 (Atp2a2), transcript variant 1, mRNA
Length = 5711
Score = 131 bits (329), Expect = 9e-29, Method: Composition-based stats.
Identities = 73/166 (43%), Positives = 99/166 (59%), Gaps = 2/166 (1%)
Frame = +3
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIP-DPKQLDLSDPA 60
RCT I + VP+TP + + + + D LRC+A A P +++ L D A
Sbjct: 2073 RCTHIRVGSTK-VPMTPGVKQKIMSVIREWGSGSDTLRCLALATHDNPLRREEMHLEDSA 2249
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
F ET+LTFVG GMLDPPR EV ++ C AGIRVI+ITGD K TA A+CRRIG+
Sbjct: 2250 NFIKYETNLTFVGCVGMLDPPRIEVASSVKLCRQAGIRVIMITGDNKGTAVAICRRIGIF 2429
Query: 121 -PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E +FTG E D+++P+ +R A NA F+R +PSHK ++V
Sbjct: 2430 GQDEDVTSKAFTGREFDELSPSAQRDACLNARCFARVEPSHKSKIV 2567
>gb|AF043106.1|AF043106 Rattus norvegicus sarco/endoplasmic reticulum Ca2+-ATPase mRNA,
partial cds
Length = 3434
Score = 131 bits (329), Expect = 9e-29, Method: Composition-based stats.
Identities = 73/166 (43%), Positives = 99/166 (59%), Gaps = 2/166 (1%)
Frame = +1
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIP-DPKQLDLSDPA 60
RCT I + VP+TP + + + + D LRC+A A P +++ L D A
Sbjct: 1045 RCTHIRVGSTK-VPMTPGVKQKIMSVIREWGSGSDTLRCLALATHDNPLRREEMHLEDSA 1221
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
F ET+LTFVG GMLDPPR EV ++ C AGIRVI+ITGD K TA A+CRRIG+
Sbjct: 1222 NFIKYETNLTFVGCVGMLDPPRIEVASSVKLCRQAGIRVIMITGDNKGTAVAICRRIGIF 1401
Query: 121 -PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E +FTG E D+++P+ +R A NA F+R +PSHK ++V
Sbjct: 1402 GQDEDVTSKAFTGREFDELSPSAQRDACLNARCFARVEPSHKSKIV 1539
>emb|X15635.1|RNSR2CA Rat mRNA for sarcoplasmic reticulum 2+-Ca-ATPase
Length = 3862
Score = 131 bits (329), Expect = 9e-29, Method: Composition-based stats.
Identities = 73/166 (43%), Positives = 99/166 (59%), Gaps = 2/166 (1%)
Frame = +1
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIP-DPKQLDLSDPA 60
RCT I + VP+TP + + + + D LRC+A A P +++ L D A
Sbjct: 1774 RCTHIRVGSTK-VPMTPGVKQKIMSVIREWGSGSDTLRCLALATHDNPLRREEMHLEDSA 1950
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
F ET+LTFVG GMLDPPR EV ++ C AGIRVI+ITGD K TA A+CRRIG+
Sbjct: 1951 NFIKYETNLTFVGCVGMLDPPRIEVASSVKLCRQAGIRVIMITGDNKGTAVAICRRIGIF 2130
Query: 121 -PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E +FTG E D+++P+ +R A NA F+R +PSHK ++V
Sbjct: 2131 GQDEDVTSKAFTGREFDELSPSAQRDACLNARCFARVEPSHKSKIV 2268
>gb|J04024.1|RATATPSRC Rat alternative brain Ca+2-ATPase mRNA, complete cds
Length = 5576
Score = 131 bits (329), Expect = 9e-29, Method: Composition-based stats.
Identities = 73/166 (43%), Positives = 99/166 (59%), Gaps = 2/166 (1%)
Frame = +2
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIP-DPKQLDLSDPA 60
RCT I + VP+TP + + + + D LRC+A A P +++ L D A
Sbjct: 1805 RCTHIRVGSTK-VPMTPGVKQKIMSVIREWGSGSDTLRCLALATHDNPLRREEMHLEDSA 1981
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
F ET+LTFVG GMLDPPR EV ++ C AGIRVI+ITGD K TA A+CRRIG+
Sbjct: 1982 NFIKYETNLTFVGCVGMLDPPRIEVASSVKLCRQAGIRVIMITGDNKGTAVAICRRIGIF 2161
Query: 121 -PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E +FTG E D+++P+ +R A NA F+R +PSHK ++V
Sbjct: 2162 GQDEDVTSKAFTGREFDELSPSAQRDACLNARCFARVEPSHKSKIV 2299
>gb|J04023.1|RATATPSRB Rat stomach non-muscle Ca+2-ATPase mRNA, complete cds
Length = 3908
Score = 131 bits (329), Expect = 9e-29, Method: Composition-based stats.
Identities = 73/166 (43%), Positives = 99/166 (59%), Gaps = 2/166 (1%)
Frame = +2
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIP-DPKQLDLSDPA 60
RCT I + VP+TP + + + + D LRC+A A P +++ L D A
Sbjct: 1706 RCTHIRVGSTK-VPMTPGVKQKIMSVIREWGSGSDTLRCLALATHDNPLRREEMHLEDSA 1882
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
F ET+LTFVG GMLDPPR EV ++ C AGIRVI+ITGD K TA A+CRRIG+
Sbjct: 1883 NFIKYETNLTFVGCVGMLDPPRIEVASSVKLCRQAGIRVIMITGDNKGTAVAICRRIGIF 2062
Query: 121 -PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E +FTG E D+++P+ +R A NA F+R +PSHK ++V
Sbjct: 2063 GQDEDVTSKAFTGREFDELSPSAQRDACLNARCFARVEPSHKSKIV 2200
>gb|J04022.1|RATATPSRA Rat brain Ca+2-ATPase mRNA, complete cds
Length = 5648
Score = 131 bits (329), Expect = 9e-29, Method: Composition-based stats.
Identities = 73/166 (43%), Positives = 99/166 (59%), Gaps = 2/166 (1%)
Frame = +1
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIP-DPKQLDLSDPA 60
RCT I + VP+TP + + + + D LRC+A A P +++ L D A
Sbjct: 2071 RCTHIRVGSTK-VPMTPGVKQKIMSVIREWGSGSDTLRCLALATHDNPLRREEMHLEDSA 2247
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
F ET+LTFVG GMLDPPR EV ++ C AGIRVI+ITGD K TA A+CRRIG+
Sbjct: 2248 NFIKYETNLTFVGCVGMLDPPRIEVASSVKLCRQAGIRVIMITGDNKGTAVAICRRIGIF 2427
Query: 121 -PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E +FTG E D+++P+ +R A NA F+R +PSHK ++V
Sbjct: 2428 GQDEDVTSKAFTGREFDELSPSAQRDACLNARCFARVEPSHKSKIV 2565
>ref|XR_054375.1| PREDICTED: Taeniopygia guttata misc_RNA (LOC100222290), partial
miscRNA
Length = 3024
Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats.
Identities = 72/167 (43%), Positives = 99/167 (59%), Gaps = 2/167 (1%)
Frame = +1
Query: 1 KRCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIPDPKQ-LDLSDP 59
+RCT + + VPLT + + ++ D LRC+A A P ++ + L D
Sbjct: 1462 ERCTHVRVGTAK-VPLTAPVRDKILGRIRDWGMGIDTLRCLALATHDSPVRRETMQLHDS 1638
Query: 60 AKFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGL 119
A F E +LTFVG GMLDPPR+EVT +I C AGIRVI+ITGD K TA A+CRRIG+
Sbjct: 1639 AAFVHYENNLTFVGCVGMLDPPRKEVTSSIEMCRKAGIRVIMITGDNKGTAVAICRRIGI 1818
Query: 120 MP-CEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E G ++TG E D++ P +R A R A F+R +P+HK ++V
Sbjct: 1819 FSETEDVSGKAYTGREFDELPPEAQRQACREARCFARVEPAHKSRIV 1959
>gb|M30581.1|RATSERCA3 Rat organellar Ca-2+ pump mRNA, complete cds
Length = 4472
Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats.
Identities = 72/167 (43%), Positives = 99/167 (59%), Gaps = 2/167 (1%)
Frame = +3
Query: 1 KRCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIPDPKQ-LDLSDP 59
+RC+ + R VPL+ + K+ LRC+A A R P K+ + L D
Sbjct: 1698 ERCSSVRV-GSRTVPLSATSREHILAKIRDWGSGSHTLRCLALATRDTPPRKEDMQLDDC 1874
Query: 60 AKFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGL 119
++F ET LTFVG GMLDPPR EV IT+C AGIRV++ITGD K TA A+CRR+G+
Sbjct: 1875 SQFVQYETGLTFVGCVGMLDPPRPEVAACITRCSRAGIRVVMITGDNKGTAVAICRRLGI 2054
Query: 120 M-PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E G ++TG E D ++P Q+R A R A F+R +P+HK ++V
Sbjct: 2055 FGDTEDVLGKAYTGREFDDLSPEQQRQACRTARCFARVEPAHKSRIV 2195
>ref|XM_002148896.1| Penicillium marneffei ATCC 18224 endoplasmic reticulum calcium
ATPase, putative, mRNA
Length = 3456
Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats.
Identities = 76/172 (44%), Positives = 105/172 (61%), Gaps = 6/172 (3%)
Frame = +1
Query: 1 KRCTRIMC-KDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIPDPKQLDLSDP 59
+RC+ ++ DG VPLT + ++ +V LR IA A + D L
Sbjct: 1543 ERCSHVLLGSDGPRVPLTKSHIGLISEQVVECGNR--GLRVIALAI--VSDISTNPLLHT 1710
Query: 60 AK----FEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCR 115
AK + +E +LT +G+ GMLDPPR EV +I KC AGIR+IVITGD + TAE++CR
Sbjct: 1711 AKTSEEYAQLERNLTLIGLVGMLDPPRPEVASSIRKCREAGIRIIVITGDNRNTAESICR 1890
Query: 116 RIGLMPC-EPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLVN 166
+IG+ E +G SFTG E D +T +QK AV+NA LFSRT+P+HK +LV+
Sbjct: 1891 QIGVFGADENLQGKSFTGREFDDLTDSQKLEAVKNASLFSRTEPAHKSKLVD 2046
>gb|BC121413.1| Xenopus tropicalis ATPase, Ca++ transporting, ubiquitou, mRNA (cDNA
clone MGC:146269 IMAGE:7689636), complete cds
Length = 3379
Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats.
Identities = 72/168 (42%), Positives = 102/168 (60%), Gaps = 3/168 (1%)
Frame = +2
Query: 1 KRCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIPDPK--QLDLSD 58
+RC + ++ PLTP + +K+ D LRC+A A R +P PK + L D
Sbjct: 1643 ERCNYVRVGSTKL-PLTPSAREKIMSKIRDWGTGMDTLRCLALATRDVP-PKLEDMQLDD 1816
Query: 59 PAKFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIG 118
KF ET+LTFVG GMLDPPR+EV+ +I C AGI+VI+ITGD K TA A+CR+IG
Sbjct: 1817 STKFINYETNLTFVGCVGMLDPPRKEVSISIELCKRAGIKVIMITGDNKGTAVAICRKIG 1996
Query: 119 LMP-CEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
+ E ++TG E D + P ++R A R+A F+R +P+HK ++V
Sbjct: 1997 IFSDYEDITDKAYTGREFDDLPPERQREACRSARCFARVEPAHKSKIV 2140
>gb|BC167326.1| Xenopus tropicalis ATPase, Ca++ transporting, ubiquitou, mRNA (cDNA
clone MGC:135366 IMAGE:7546416), complete cds
Length = 3777
Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats.
Identities = 72/168 (42%), Positives = 102/168 (60%), Gaps = 3/168 (1%)
Frame = +2
Query: 1 KRCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIPDPK--QLDLSD 58
+RC + ++ PLTP + +K+ D LRC+A A R +P PK + L D
Sbjct: 1892 ERCNYVRVGSTKL-PLTPSAREKIMSKIRDWGTGMDTLRCLALATRDVP-PKLEDMQLDD 2065
Query: 59 PAKFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIG 118
KF ET+LTFVG GMLDPPR+EV+ +I C AGI+VI+ITGD K TA A+CR+IG
Sbjct: 2066 STKFINYETNLTFVGCVGMLDPPRKEVSISIELCKRAGIKVIMITGDNKGTAVAICRKIG 2245
Query: 119 LMP-CEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
+ E ++TG E D + P ++R A R+A F+R +P+HK ++V
Sbjct: 2246 IFSDYEDITDKAYTGREFDDLPPERQREACRSARCFARVEPAHKSKIV 2389
>gb|EU130921.1| Oryctolagus cuniculus SERCA1a mRNA, complete cds
Length = 2985
Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats.
Identities = 73/166 (43%), Positives = 99/166 (59%), Gaps = 2/166 (1%)
Frame = +1
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIPDPKQ-LDLSDPA 60
RC + R VP+T + + + + D LRC+A A R P ++ + L D +
Sbjct: 1570 RCNYVRVGTTR-VPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKREEMVLDDSS 1746
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
+F ETDLTFVGV GMLDPPR+EV +I C AGIRVI+ITGD K TA A+CRRIG+
Sbjct: 1747 RFMEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIF 1926
Query: 121 -PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E ++TG E D + A++R A R A F+R +PSHK ++V
Sbjct: 1927 GENEEVADRAYTGREFDDLPLAEQREACRRACCFARVEPSHKSKIV 2064
>gb|M12898.1|RABATPAA Rabbit Ca2+ ATPase mRNA, complete cds
Length = 3317
Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats.
Identities = 73/166 (43%), Positives = 99/166 (59%), Gaps = 2/166 (1%)
Frame = +1
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIPDPKQ-LDLSDPA 60
RC + R VP+T + + + + D LRC+A A R P ++ + L D +
Sbjct: 1651 RCNYVRVGTTR-VPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKREEMVLDDSS 1827
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
+F ETDLTFVGV GMLDPPR+EV +I C AGIRVI+ITGD K TA A+CRRIG+
Sbjct: 1828 RFMEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIF 2007
Query: 121 -PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E ++TG E D + A++R A R A F+R +PSHK ++V
Sbjct: 2008 GENEEVADRAYTGREFDDLPLAEQREACRRACCFARVEPSHKSKIV 2145
>ref|XM_001505413.1| PREDICTED: Ornithorhynchus anatinus similar to sarcoplasmic reticulum
Ca2+-transport ATPase (LOC100073740), mRNA
Length = 3504
Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats.
Identities = 73/167 (43%), Positives = 98/167 (58%), Gaps = 2/167 (1%)
Frame = +1
Query: 1 KRCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIPDPKQ-LDLSDP 59
+RCT I ++ P+T I + + + D LRC+A A P ++ ++L D
Sbjct: 2074 ERCTHIRVGSTKM-PMTQGIKHKIMSVIREWGSGRDTLRCLALATHDNPPRREEMNLDDS 2250
Query: 60 AKFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGL 119
A F ET+LTFVG GMLDPPR EV +I C AGIRVI+ITGD K TA A+CRRIG+
Sbjct: 2251 ANFIKYETNLTFVGCVGMLDPPRTEVASSIKLCRQAGIRVIMITGDNKGTAVAICRRIGI 2430
Query: 120 MPCEPR-EGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E +FTG E D++ P +R A NA F+R +PSHK ++V
Sbjct: 2431 FGSEEDVSSKAFTGREFDELAPPAQRDACLNARCFARVEPSHKSKIV 2571
>emb|AM137441.1| Equus caballus mRNA for sarcoplasmic/endoplasmic reticulum calcium
ATPase 2 (atp2A2 gene)
Length = 4125
Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats.
Identities = 72/166 (43%), Positives = 99/166 (59%), Gaps = 2/166 (1%)
Frame = +1
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIP-DPKQLDLSDPA 60
RCT I + VP+ P + + + + D LRC+A A P ++++L D A
Sbjct: 1729 RCTHIRVGSTK-VPMIPGVKQKIMSVIREWGSGSDTLRCLALATHDNPLRREEMNLEDSA 1905
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
F ET+LTFVG GMLDPPR EV ++ C AGIRVI+ITGD K TA A+CRRIG+
Sbjct: 1906 NFIKYETNLTFVGCVGMLDPPRIEVASSVKLCRQAGIRVIMITGDNKGTAVAICRRIGIF 2085
Query: 121 -PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E +FTG E D+++P+ +R A NA F+R +PSHK ++V
Sbjct: 2086 RQDEDVTSKAFTGREFDELSPSAQRDACLNARCFARVEPSHKSKIV 2223
>emb|BX647368.1|HSM807513 Homo sapiens mRNA; cDNA DKFZp779N0459 (from clone DKFZp779N0459)
Length = 2544
Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats.
Identities = 75/166 (45%), Positives = 99/166 (59%), Gaps = 2/166 (1%)
Frame = +3
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIPDPKQ-LDLSDPA 60
RC + R VPLT + + + D LRC+A A R P ++ + L D A
Sbjct: 792 RCNYVRVGTTR-VPLTGPVKEKIMAVIKEWGTGRDTLRCLALATRDTPPKREEMVLDDSA 968
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
+F ETDLTFVGV GMLDPPR+EVT +I C AGIRVI+ITGD + TA A+CRRIG+
Sbjct: 969 RFLEYETDLTFVGVVGMLDPPRKEVTGSIQLCRDAGIRVIMITGDNEGTAIAICRRIGIF 1148
Query: 121 -PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E ++TG E D + A++R A R A F+R +PSHK ++V
Sbjct: 1149GENEEVADRAYTGREFDDLPLAEQREACRRACCFARVEPSHKSKIV 1286
>emb|CR733760.2|CNS0GSY7 Tetraodon nigroviridis full-length cDNA
Length = 1778
Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats.
Identities = 70/154 (45%), Positives = 94/154 (61%), Gaps = 2/154 (1%)
Frame = +1
Query: 14 VPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIP-DPKQLDLSDPAKFEAIETDLTFV 72
VPLT I + + D LRC+A A R P ++++L D KF ETDLTFV
Sbjct: 58 VPLTNAIKEKIMAVIREWGTGRDTLRCLALATRDCPLKIEEMNLEDSTKFADYETDLTFV 237
Query: 73 GVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLMPCEPR-EGLSFT 131
G GMLDPPR+EV+ +I C AGIRVI+ITGD K TA A+CRRIG+ + G ++T
Sbjct: 238 GCVGMLDPPRKEVSSSIELCRDAGIRVIMITGDNKGTAIAICRRIGIFSEDQDVTGKAYT 417
Query: 132 GYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
G E D + ++ AVR A F+R +P+HK ++V
Sbjct: 418 GREFDDLPLHEQAEAVRRACCFARVEPAHKSKIV 519
>ref|XM_002082843.1| Drosophila simulans GD24994 (Dsim\GD24994), mRNA
Length = 2067
Score = 89.7 bits (221), Expect(2) = 2e-28, Method: Composition-based stats.
Identities = 45/87 (51%), Positives = 62/87 (71%), Gaps = 1/87 (1%)
Frame = +2
Query: 80 PPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLMP-CEPREGLSFTGYELDQM 138
PP +EV ++I +C AGIRVIVITGD K TAEA+CRRIG+ E G S++G E D +
Sbjct: 1805 PPEKEVFDSIVRCRAAGIRVIVITGDNKATAEAICRRIGVFAEDEDTTGKSYSGREFDDL 1984
Query: 139 TPAQKRAAVRNAVLFSRTDPSHKMQLV 165
+P +++AAV + LFSR +P HK ++V
Sbjct: 1985 SPTEQKAAVARSRLFSRVEPQHKSKIV 2065
Score = 61.2 bits (147), Expect(2) = 2e-28, Method: Composition-based stats.
Identities = 34/84 (40%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Frame = +1
Query: 1 KRCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIP-DPKQLDLSDP 59
+RCT + VPLT + + + + D LRC+A A P P ++DL D
Sbjct: 1567 ERCTHARVGTTK-VPLTSALKAKILALTGQYGTGRDTLRCLALAVADSPMKPDEMDLGDS 1743
Query: 60 AKFEAIETDLTFVGVCGMLDPPRR 83
KF E +LTFVGV GMLDPPR+
Sbjct: 1744 TKFYQYEVNLTFVGVVGMLDPPRK 1815
>dbj|AB168545.1| Macaca fascicularis testis cDNA clone: QtsA-12913, similar to human
ATPase, Ca++ transporting, cardiac muscle, fast twitch
1(ATP2A1), transcript variant a, mRNA, RefSeq:
NM_173201.1
Length = 2704
Score = 129 bits (324), Expect = 3e-28, Method: Composition-based stats.
Identities = 74/166 (44%), Positives = 97/166 (58%), Gaps = 2/166 (1%)
Frame = +2
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIPDPKQ-LDLSDPA 60
RC + R VPLT + + + D LRC+A A R P ++ + L D A
Sbjct: 989 RCNYVRVGTTR-VPLTGPVKEKIMAVIKEWGTGRDTLRCLALATRDTPPKREEMILDDSA 1165
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
+F ETDLTFVGV GMLDPPR+EV +I C AGIRVI+ITGD K TA A+CRRIG+
Sbjct: 1166 RFLEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIF 1345
Query: 121 -PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E ++TG E D + ++R A R A F+R +PSHK ++V
Sbjct: 1346 GENEEVADRAYTGREFDDLPLPEQREACRRACCFARVEPSHKSKIV 1483
>emb|AJ310846.1|HVU310846 Hordeum vulgare partial CA7 gene for P-type ATPase
Length = 2022
Score = 129 bits (324), Expect = 3e-28, Method: Composition-based stats.
Identities = 74/176 (42%), Positives = 98/176 (55%), Gaps = 11/176 (6%)
Frame = +1
Query: 1 KRCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIP----------D 50
+R + I +DG +VPL K V ++ +S ALRC+ FA++
Sbjct: 469 ERSSHIQLQDGSVVPLDEKSRKAVLASLHELS--TKALRCLGFAYKEDLGEFATYDGEYH 642
Query: 51 PKQLDLSDPAKFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETA 110
P L DPA + AIETDL FVG+ G+ DPPR EV +AI C AGIRV+VITGD KETA
Sbjct: 643 PAHKLLLDPANYAAIETDLIFVGLAGLRDPPREEVFDAIEDCRAAGIRVMVITGDNKETA 822
Query: 111 EAVCRRIGLM-PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
EA+C IG+ P E SFTG E + + + +LFSR +P HK ++V
Sbjct: 823 EAICHEIGVFSPDEDITLKSFTGREFMALEDKKTLLRRKGGLLFSRAEPRHKQEIV 990
>ref|XR_012271.1| PREDICTED: Macaca mulatta similar to ATPase, Ca++ transporting,
cardiac muscle, slow twitch 2 isoform 2 (LOC710702), mRNA
Length = 3758
Score = 129 bits (324), Expect = 3e-28, Method: Composition-based stats.
Identities = 72/166 (43%), Positives = 97/166 (58%), Gaps = 2/166 (1%)
Frame = +1
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIP-DPKQLDLSDPA 60
RCT I + VP+T + + + + D LRC+A A P +++ L D A
Sbjct: 1546 RCTHIRVGSTK-VPMTSGVKQKIMSVIREWGSGSDTLRCLALATHDNPLRREEMHLEDSA 1722
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
F ET+LTFVG GMLDPPR EV ++ C AGIRVI+ITGD K TA A+CRRIG+
Sbjct: 1723 NFIKYETNLTFVGCVGMLDPPRIEVASSVKLCRQAGIRVIMITGDNKGTAVAICRRIGIF 1902
Query: 121 -PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E +FTG E D++ P+ +R A NA F+R +PSHK ++V
Sbjct: 1903 GQDEDVTSKAFTGREFDELNPSAQRDACLNARCFARVEPSHKSKIV 2040
>gb|BC119938.1| Bos taurus ATPase, Ca++ transporting, cardiac muscle, fast twitch 1,
mRNA (cDNA clone MGC:140007 IMAGE:8286017), complete cds
Length = 3516
Score = 129 bits (323), Expect = 4e-28, Method: Composition-based stats.
Identities = 73/166 (43%), Positives = 98/166 (59%), Gaps = 2/166 (1%)
Frame = +3
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIPDPKQ-LDLSDPA 60
RC + R VP+T + + + + D LRC+A A R P ++ + L D
Sbjct: 1737 RCNYVRVGTTR-VPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKREEMVLDDST 1913
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
KF ETDLTFVGV GMLDPPR+EV +I C AGIRVI+ITGD K TA A+CRRIG+
Sbjct: 1914 KFMEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIF 2093
Query: 121 -PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E ++TG E D + A++R A R A F+R +P+HK ++V
Sbjct: 2094 GENEDVADRAYTGREFDDLPLAEQREACRRACCFARVEPTHKSKIV 2231
>gb|AE017348.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 8, complete
sequence
Length = 1194300
Score = 129 bits (323), Expect = 4e-28, Method: Composition-based stats.
Identities = 78/175 (44%), Positives = 105/175 (60%), Gaps = 9/175 (5%)
Frame = +2
Query: 1 KRCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIPDPKQLDLS--- 57
+RC+ ++ +G + TP++ + K ++ LR +A A+ D D+S
Sbjct: 459518 ERCSNVLLPNG-VKAFTPELRKKLEEK--QLEYGHKGLRTLALAY---VDESDGDVSHYK 459679
Query: 58 -----DPAKFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEA 112
D KFE D+TFVG+ GMLDPPR EV +AI KC TAGIR IVITGD K TAE
Sbjct: 459680 TDRSEDYVKFE---RDMTFVGLIGMLDPPRPEVRDAIAKCKTAGIRTIVITGDNKNTAET 459850
Query: 113 VCRRIGLMPC-EPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLVN 166
+CR IG+ E G S+TG ELD ++ +K AAV+ A LFSRT+P+HK QLV+
Sbjct: 459851 ICREIGVFGHDEDLTGKSYTGRELDALSHEEKIAAVQRASLFSRTEPTHKSQLVD 460015
>ref|XM_381441.1| Gibberella zeae PH-1 hypothetical protein partial mRNA
Length = 2994
Score = 129 bits (323), Expect = 4e-28, Method: Composition-based stats.
Identities = 73/169 (43%), Positives = 105/169 (62%), Gaps = 4/169 (2%)
Frame = +1
Query: 2 RCTRIMC-KDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFA-FRPIPDPKQLDLSDP 59
RCT + +G+ VPLT KI + T++ R + LR IA A +P+ L +D
Sbjct: 1537 RCTETLVGSNGKKVPLTKKISDRLMTEIVRYG--NNGLRVIALASIDNVPENPLLQTADT 1710
Query: 60 AK-FEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIG 118
+ + +E +TF+G+ MLDPPR EV A+ +C AGIRVIVITGD + TAE++CR+IG
Sbjct: 1711 TEHYAQLEQKMTFLGLVCMLDPPREEVPHAVKQCKDAGIRVIVITGDNRNTAESICRQIG 1890
Query: 119 LM-PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLVN 166
+ E G S+TG E DQ++P ++ A + A LFSR +PSHK +LV+
Sbjct: 1891 VFGQHEDLTGKSYTGREFDQLSPNEQLEAAKRASLFSRVEPSHKSRLVD 2037
>ref|XM_001833696.1| Coprinopsis cinerea okayama7#130 hypothetical protein (CC1G_10813)
partial mRNA
Length = 2988
Score = 128 bits (322), Expect = 5e-28, Method: Composition-based stats.
Identities = 76/173 (43%), Positives = 106/173 (61%), Gaps = 7/173 (4%)
Frame = +1
Query: 1 KRCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGM-EDALRCIAFAFRPIPDPKQLDL--- 56
+RCT ++ +G+ +PLTP++ ST+ ++R G LR +A A+R + D +
Sbjct: 1552 ERCTSVLV-NGKTIPLTPQLRSTL---LDRTLGYGSQGLRTLALAYRDVQDLDSSNYQSE 1719
Query: 57 --SDPAKFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVC 114
SD A+FE +L FV + GMLDPPR EV A+ C AGIRVI ITGD K TAE +C
Sbjct: 1720 STSDYARFE---QNLVFVSLVGMLDPPRPEVRSAVANCKAAGIRVICITGDNKGTAETIC 1890
Query: 115 RRIGLM-PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLVN 166
R+IG+ E G S+TG E + ++ +K AV+ A LFSRT+P HK QLV+
Sbjct: 1891 RQIGIFGEDEDLTGKSYTGKEFEALSHEEKVKAVQRASLFSRTEPGHKSQLVD 2049
>gb|EU195061.1| Oryctolagus cuniculus SERCA2a isoform mRNA, complete cds
Length = 2994
Score = 128 bits (322), Expect = 5e-28, Method: Composition-based stats.
Identities = 72/166 (43%), Positives = 97/166 (58%), Gaps = 2/166 (1%)
Frame = +1
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIP-DPKQLDLSDPA 60
RCT I + VP+T + + + + D LRC+A A P +++ L D A
Sbjct: 1567 RCTHIRVGSTK-VPMTAGVKQKIMSVIREWGSGSDTLRCLALATHDNPLRREEMHLEDSA 1743
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
F ET+LTFVG GMLDPPR EV ++ C AGIRVI+ITGD K TA A+CRRIG+
Sbjct: 1744 NFIKYETNLTFVGCVGMLDPPRIEVASSVKLCRQAGIRVIMITGDNKGTAVAICRRIGIF 1923
Query: 121 PCEPR-EGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E +FTG E D++ P+ +R A NA F+R +PSHK ++V
Sbjct: 1924 GQEEDVTAKAFTGREFDELNPSAQRDACLNARCFARVEPSHKSKIV 2061
>gb|J04703.1|RABACATP Rabbit smooth muscle sarco(endo)plasmic calcium-ATPase mRNA, complete
cds
Length = 4141
Score = 128 bits (322), Expect = 5e-28, Method: Composition-based stats.
Identities = 72/166 (43%), Positives = 97/166 (58%), Gaps = 2/166 (1%)
Frame = +1
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIP-DPKQLDLSDPA 60
RCT I + VP+T + + + + D LRC+A A P +++ L D A
Sbjct: 1759 RCTHIRVGSTK-VPMTAGVKQKIMSVIREWGSGSDTLRCLALATHDNPLRREEMHLEDSA 1935
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
F ET+LTFVG GMLDPPR EV ++ C AGIRVI+ITGD K TA A+CRRIG+
Sbjct: 1936 NFIKYETNLTFVGCVGMLDPPRIEVASSVKLCRQAGIRVIMITGDNKGTAVAICRRIGIF 2115
Query: 121 PCEPR-EGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E +FTG E D++ P+ +R A NA F+R +PSHK ++V
Sbjct: 2116 GQEEDVTAKAFTGREFDELNPSAQRDACLNARCFARVEPSHKSKIV 2253
>gb|U65228.1|MNU65228 Makaira nigricans sarcoplasmic/endoplasmic reticulum calcium ATPase
1A mRNA, complete cds
Length = 4092
Score = 128 bits (322), Expect = 6e-28, Method: Composition-based stats.
Identities = 73/166 (43%), Positives = 95/166 (57%), Gaps = 2/166 (1%)
Frame = +2
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIP-DPKQLDLSDPA 60
RC + R VPLT I + + D LRC+A A R P ++++L
Sbjct: 1940 RCAYVRVGTTR-VPLTSAIKEKIMAVIRDWGTGRDTLRCLALATRDTPLKVEEMNLEYST 2116
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
KF ETD+TFVG GMLDPPR+EVT +I C AGIRVI+ITGD K TA A+CRRIG+
Sbjct: 2117 KFADYETDMTFVGCVGMLDPPRKEVTGSIELCRDAGIRVIMITGDNKGTAIAICRRIGIF 2296
Query: 121 P-CEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E ++TG E D + + AVR A F+R +PSHK ++V
Sbjct: 2297 KEDEDVSNKAYTGREFDDLPSQDQAEAVRRACCFARVEPSHKSKIV 2434
>emb|X52496.1|OCCAATP Rabbit mRNA for calcium ATPase
Length = 4472
Score = 128 bits (322), Expect = 6e-28, Method: Composition-based stats.
Identities = 72/166 (43%), Positives = 97/166 (58%), Gaps = 2/166 (1%)
Frame = +3
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIP-DPKQLDLSDPA 60
RCT I + VP+T + + + + D LRC+A A P +++ L D A
Sbjct: 2082 RCTHIRVGSTK-VPMTAGVKQKIMSVIREWGSGSDTLRCLALATHDNPLRREEMHLKDSA 2258
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
F ET+LTFVG GMLDPPR EV ++ C AGIRVI+ITGD K TA A+CRRIG+
Sbjct: 2259 NFIKYETNLTFVGCVGMLDPPRIEVASSVKLCRQAGIRVIMITGDNKGTAVAICRRIGIF 2438
Query: 121 PCEPR-EGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E +FTG E D++ P+ +R A NA F+R +PSHK ++V
Sbjct: 2439 GQEEDVTAKAFTGREFDELNPSAQRDACLNARCFARVEPSHKSKIV 2576
>emb|X02814.1|OCATPDR Rabbit mRNA for Ca2+-ATPase
Length = 3722
Score = 128 bits (322), Expect = 6e-28, Method: Composition-based stats.
Identities = 72/166 (43%), Positives = 97/166 (58%), Gaps = 2/166 (1%)
Frame = +3
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIP-DPKQLDLSDPA 60
RCT I + VP+T + + + + D LRC+A A P +++ L D A
Sbjct: 1695 RCTHIRVGSTK-VPMTAGVKQKIMSVIREWGSGSDTLRCLALATHDNPLRREEMHLKDSA 1871
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
F ET+LTFVG GMLDPPR EV ++ C AGIRVI+ITGD K TA A+CRRIG+
Sbjct: 1872 NFIKYETNLTFVGCVGMLDPPRIEVASSVKLCRQAGIRVIMITGDNKGTAVAICRRIGIF 2051
Query: 121 PCEPR-EGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E +FTG E D++ P+ +R A NA F+R +PSHK ++V
Sbjct: 2052 GQEEDVTAKAFTGREFDELNPSAQRDACLNARCFARVEPSHKSKIV 2189
>gb|BT026617.1| Gasterosteus aculeatus clone CEC24-B04 mRNA sequence
Length = 3819
Score = 128 bits (322), Expect = 6e-28, Method: Composition-based stats.
Identities = 75/166 (45%), Positives = 95/166 (57%), Gaps = 2/166 (1%)
Frame = +1
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIP-DPKQLDLSDPA 60
RC + R VPLT I + T + D LRC+A A R P ++ L D
Sbjct: 1696 RCAYVRVGTNR-VPLTNAIKEKILTVIREWGTGRDTLRCLALATRDSPLRMDEMVLEDST 1872
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
KF ETDLTFVG GMLDPPR+EV +I C AGIRVI+ITGD K TA A+CRRIG+
Sbjct: 1873 KFADYETDLTFVGCVGMLDPPRKEVCGSIELCRAAGIRVIMITGDNKGTAIAICRRIGIF 2052
Query: 121 P-CEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E E ++TG E D + ++ AV A F+R +PSHK ++V
Sbjct: 2053 KEDEDVENKAYTGREFDDLPSHEQPQAVIRASCFARVEPSHKSKIV 2190
>ref|NM_001135765.1| Homo sapiens ATPase, Ca++ transporting, cardiac muscle, slow twitch 2
(ATP2A2), transcript variant 3, mRNA
Length = 8248
Score = 128 bits (321), Expect = 7e-28, Method: Composition-based stats.
Identities = 72/166 (43%), Positives = 97/166 (58%), Gaps = 2/166 (1%)
Frame = +3
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIP-DPKQLDLSDPA 60
RCT I + VP+T + + + + D LRC+A A P +++ L D A
Sbjct: 2049 RCTHIRVGSTK-VPMTSGVKQKIMSVIREWGSGSDTLRCLALATHDNPLRREEMHLEDSA 2225
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
F ET+LTFVG GMLDPPR EV ++ C AGIRVI+ITGD K TA A+CRRIG+
Sbjct: 2226 NFIKYETNLTFVGCVGMLDPPRIEVASSVKLCRQAGIRVIMITGDNKGTAVAICRRIGIF 2405
Query: 121 -PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E +FTG E D++ P+ +R A NA F+R +PSHK ++V
Sbjct: 2406 GQDEDVTSKAFTGREFDELNPSAQRDACLNARCFARVEPSHKSKIV 2543
>dbj|AK293877.1| Homo sapiens cDNA FLJ55676 complete cds, highly similar to
Sarcoplasmic/endoplasmic reticulum calcium ATPase 2 (EC
3.6.3.8)
Length = 2951
Score = 128 bits (321), Expect = 7e-28, Method: Composition-based stats.
Identities = 72/166 (43%), Positives = 97/166 (58%), Gaps = 2/166 (1%)
Frame = +2
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIP-DPKQLDLSDPA 60
RCT I + VP+T + + + + D LRC+A A P +++ L D A
Sbjct: 1238 RCTHIRVGSTK-VPMTSGVKQKIMSVIREWGSGSDTLRCLALATHDNPLRREEMHLEDSA 1414
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
F ET+LTFVG GMLDPPR EV ++ C AGIRVI+ITGD K TA A+CRRIG+
Sbjct: 1415 NFIKYETNLTFVGCVGMLDPPRIEVASSVKLCRQAGIRVIMITGDNKGTAVAICRRIGIF 1594
Query: 121 -PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E +FTG E D++ P+ +R A NA F+R +PSHK ++V
Sbjct: 1595 GQDEDVTSKAFTGREFDELNPSAQRDACLNARCFARVEPSHKSKIV 1732
>ref|NM_001681.3| Homo sapiens ATPase, Ca++ transporting, cardiac muscle, slow twitch 2
(ATP2A2), transcript variant 2, mRNA
Length = 4359
Score = 128 bits (321), Expect = 7e-28, Method: Composition-based stats.
Identities = 72/166 (43%), Positives = 97/166 (58%), Gaps = 2/166 (1%)
Frame = +3
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIP-DPKQLDLSDPA 60
RCT I + VP+T + + + + D LRC+A A P +++ L D A
Sbjct: 2130 RCTHIRVGSTK-VPMTSGVKQKIMSVIREWGSGSDTLRCLALATHDNPLRREEMHLEDSA 2306
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
F ET+LTFVG GMLDPPR EV ++ C AGIRVI+ITGD K TA A+CRRIG+
Sbjct: 2307 NFIKYETNLTFVGCVGMLDPPRIEVASSVKLCRQAGIRVIMITGDNKGTAVAICRRIGIF 2486
Query: 121 -PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E +FTG E D++ P+ +R A NA F+R +PSHK ++V
Sbjct: 2487 GQDEDVTSKAFTGREFDELNPSAQRDACLNARCFARVEPSHKSKIV 2624
>ref|NM_170665.3| Homo sapiens ATPase, Ca++ transporting, cardiac muscle, slow twitch 2
(ATP2A2), transcript variant 1, mRNA
Length = 8329
Score = 128 bits (321), Expect = 7e-28, Method: Composition-based stats.
Identities = 72/166 (43%), Positives = 97/166 (58%), Gaps = 2/166 (1%)
Frame = +3
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIP-DPKQLDLSDPA 60
RCT I + VP+T + + + + D LRC+A A P +++ L D A
Sbjct: 2130 RCTHIRVGSTK-VPMTSGVKQKIMSVIREWGSGSDTLRCLALATHDNPLRREEMHLEDSA 2306
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
F ET+LTFVG GMLDPPR EV ++ C AGIRVI+ITGD K TA A+CRRIG+
Sbjct: 2307 NFIKYETNLTFVGCVGMLDPPRIEVASSVKLCRQAGIRVIMITGDNKGTAVAICRRIGIF 2486
Query: 121 -PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E +FTG E D++ P+ +R A NA F+R +PSHK ++V
Sbjct: 2487 GQDEDVTSKAFTGREFDELNPSAQRDACLNARCFARVEPSHKSKIV 2624
>gb|BC035588.1| Homo sapiens ATPase, Ca++ transporting, cardiac muscle, slow twitch
2, mRNA (cDNA clone MGC:45367 IMAGE:5503508), complete
cds
Length = 4152
Score = 128 bits (321), Expect = 7e-28, Method: Composition-based stats.
Identities = 72/166 (43%), Positives = 97/166 (58%), Gaps = 2/166 (1%)
Frame = +3
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIP-DPKQLDLSDPA 60
RCT I + VP+T + + + + D LRC+A A P +++ L D A
Sbjct: 1677 RCTHIRVGSTK-VPMTSGVKQKIMSVIREWGSGSDTLRCLALATHDNPLRREEMHLEDSA 1853
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
F ET+LTFVG GMLDPPR EV ++ C AGIRVI+ITGD K TA A+CRRIG+
Sbjct: 1854 NFIKYETNLTFVGCVGMLDPPRIEVASSVKLCRQAGIRVIMITGDNKGTAVAICRRIGIF 2033
Query: 121 -PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E +FTG E D++ P+ +R A NA F+R +PSHK ++V
Sbjct: 2034 GQDEDVTSKAFTGREFDELNPSAQRDACLNARCFARVEPSHKSKIV 2171
>gb|M23115.1|HUMHK2A Homo sapiens calcium-ATPase (HK2) mRNA, complete cds
Length = 3781
Score = 128 bits (321), Expect = 7e-28, Method: Composition-based stats.
Identities = 72/166 (43%), Positives = 97/166 (58%), Gaps = 2/166 (1%)
Frame = +1
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIP-DPKQLDLSDPA 60
RCT I + VP+T + + + + D LRC+A A P +++ L D A
Sbjct: 1570 RCTHIRVGSTK-VPMTSGVKQKIMSVIREWGSGSDTLRCLALATHDNPLRREEMHLEDSA 1746
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
F ET+LTFVG GMLDPPR EV ++ C AGIRVI+ITGD K TA A+CRRIG+
Sbjct: 1747 NFIKYETNLTFVGCVGMLDPPRIEVASSVKLCRQAGIRVIMITGDNKGTAVAICRRIGIF 1926
Query: 121 -PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E +FTG E D++ P+ +R A NA F+R +PSHK ++V
Sbjct: 1927 GQDEDVTSKAFTGREFDELNPSAQRDACLNARCFARVEPSHKSKIV 2064
>gb|M23114.1|HUMHK1A Homo sapiens calcium-ATPase (HK1) mRNA, complete cds
Length = 4134
Score = 128 bits (321), Expect = 7e-28, Method: Composition-based stats.
Identities = 72/166 (43%), Positives = 97/166 (58%), Gaps = 2/166 (1%)
Frame = +2
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIP-DPKQLDLSDPA 60
RCT I + VP+T + + + + D LRC+A A P +++ L D A
Sbjct: 1730 RCTHIRVGSTK-VPMTSGVKQKIMSVIREWGSGSDTLRCLALATHDNPLRREEMHLEDSA 1906
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
F ET+LTFVG GMLDPPR EV ++ C AGIRVI+ITGD K TA A+CRRIG+
Sbjct: 1907 NFIKYETNLTFVGCVGMLDPPRIEVASSVKLCRQAGIRVIMITGDNKGTAVAICRRIGIF 2086
Query: 121 -PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E +FTG E D++ P+ +R A NA F+R +PSHK ++V
Sbjct: 2087 GQDEDVTSKAFTGREFDELNPSAQRDACLNARCFARVEPSHKSKIV 2224
>ref|XM_509362.2| PREDICTED: Pan troglodytes ATPase, Ca++ transporting, cardiac muscle,
slow twitch 2, transcript variant 3 (ATP2A2), mRNA
Length = 3496
Score = 127 bits (320), Expect = 8e-28, Method: Composition-based stats.
Identities = 72/166 (43%), Positives = 97/166 (58%), Gaps = 2/166 (1%)
Frame = +1
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIP-DPKQLDLSDPA 60
RCT I + VP+T + + + + D LRC+A A P +++ L D A
Sbjct: 1567 RCTHIRVGSTK-VPMTSGVKQKIMSVIREWGSGSDTLRCLALATHDNPLRREEMHLEDSA 1743
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
F ET+LTFVG GMLDPPR EV ++ C AGIRVI+ITGD K TA A+CRRIG+
Sbjct: 1744 NFIKYETNLTFVGCVGMLDPPRIEVASSVKLCRQAGIRVIMITGDNKGTAVAICRRIGIF 1923
Query: 121 -PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E +FTG E D++ P+ +R A NA F+R +PSHK ++V
Sbjct: 1924 GQDEDVTSKAFTGREFDELNPSAQRDACLNARCFARVEPSHKSKIV 2061
>ref|XM_001141715.1| PREDICTED: Pan troglodytes ATPase, Ca++ transporting, cardiac muscle,
slow twitch 2, transcript variant 2 (ATP2A2), mRNA
Length = 7735
Score = 127 bits (320), Expect = 8e-28, Method: Composition-based stats.
Identities = 72/166 (43%), Positives = 97/166 (58%), Gaps = 2/166 (1%)
Frame = +1
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIP-DPKQLDLSDPA 60
RCT I + VP+T + + + + D LRC+A A P +++ L D A
Sbjct: 1567 RCTHIRVGSTK-VPMTSGVKQKIMSVIREWGSGSDTLRCLALATHDNPLRREEMHLEDSA 1743
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
F ET+LTFVG GMLDPPR EV ++ C AGIRVI+ITGD K TA A+CRRIG+
Sbjct: 1744 NFIKYETNLTFVGCVGMLDPPRIEVASSVKLCRQAGIRVIMITGDNKGTAVAICRRIGIF 1923
Query: 121 -PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E +FTG E D++ P+ +R A NA F+R +PSHK ++V
Sbjct: 1924 GQDEDVTSKAFTGREFDELNPSAQRDACLNARCFARVEPSHKSKIV 2061
>ref|XM_001141455.1| PREDICTED: Pan troglodytes ATPase, Ca++ transporting, cardiac muscle,
slow twitch 2, transcript variant 1 (ATP2A2), mRNA
Length = 3783
Score = 127 bits (320), Expect = 8e-28, Method: Composition-based stats.
Identities = 72/166 (43%), Positives = 97/166 (58%), Gaps = 2/166 (1%)
Frame = +1
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIP-DPKQLDLSDPA 60
RCT I + VP+T + + + + D LRC+A A P +++ L D A
Sbjct: 1567 RCTHIRVGSTK-VPMTSGVKQKIMSVIREWGSGSDTLRCLALATHDNPLRREEMHLEDSA 1743
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
F ET+LTFVG GMLDPPR EV ++ C AGIRVI+ITGD K TA A+CRRIG+
Sbjct: 1744 NFIKYETNLTFVGCVGMLDPPRIEVASSVKLCRQAGIRVIMITGDNKGTAVAICRRIGIF 1923
Query: 121 -PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E +FTG E D++ P+ +R A NA F+R +PSHK ++V
Sbjct: 1924 GQDEDVTSKAFTGREFDELNPSAQRDACLNARCFARVEPSHKSKIV 2061
>gb|BC133185.1| Xenopus laevis ATP2A2 protein, mRNA (cDNA clone MGC:160540
IMAGE:3398724), complete cds
Length = 5018
Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats.
Identities = 72/166 (43%), Positives = 98/166 (59%), Gaps = 2/166 (1%)
Frame = +1
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIPDPKQ-LDLSDPA 60
RCT I ++ LTP I + + + D LRC+A A P K+ ++L D
Sbjct: 2002 RCTHIRVGSVKMA-LTPGIKQKIMSVIREWGTGRDTLRCLALATHDNPARKEEMNLEDSN 2178
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
F ET+LTFVG GMLDPPR EV ++ C AGIRVI+ITGD K TA A+CRR+G+
Sbjct: 2179 NFINYETNLTFVGCVGMLDPPRTEVAASVKMCRQAGIRVIMITGDNKGTAVAICRRVGIF 2358
Query: 121 -PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
+ +FTG E D+++PA +R A NA F+R +PSHK ++V
Sbjct: 2359 REDDDVTDKAFTGREFDELSPAAQRDACLNARCFARVEPSHKSKIV 2496
>ref|XM_767278.1| Cryptococcus neoformans var. neoformans B-3501A hypothetical protein
(CNBL2380) partial mRNA
Length = 3021
Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats.
Identities = 78/175 (44%), Positives = 105/175 (60%), Gaps = 9/175 (5%)
Frame = +1
Query: 1 KRCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIPDPKQLDLS--- 57
+RC+ ++ +G + TP++ + K ++ LR +A A+ D D+S
Sbjct: 1567 ERCSNVLLPNG-VKAFTPELRKKLEEK--QLEYGHKGLRTLALAY---VDESDGDVSHYK 1728
Query: 58 -----DPAKFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEA 112
D KFE D+TFVG+ GMLDPPR EV +AI KC TAGIR IVITGD K TAE
Sbjct: 1729 TDRSEDYVKFE---RDMTFVGLIGMLDPPRPEVRDAIAKCKTAGIRTIVITGDNKNTAET 1899
Query: 113 VCRRIGLMPC-EPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLVN 166
+CR IG+ E G S+TG ELD ++ +K AAV+ A LFSRT+P+HK QLV+
Sbjct: 1900 ICREIGVFGHDEDLTGKSYTGRELDALSHEEKIAAVQRASLFSRTEPTHKSQLVD 2064
>ref|XM_572412.1| Cryptococcus neoformans var. neoformans JEC21 calcium-transporting
ATPase (CNH02370) partial mRNA
Length = 3321
Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats.
Identities = 78/175 (44%), Positives = 105/175 (60%), Gaps = 9/175 (5%)
Frame = +1
Query: 1 KRCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIPDPKQLDLS--- 57
+RC+ ++ +G + TP++ + K ++ LR +A A+ D D+S
Sbjct: 1729 ERCSNVLLPNG-VKAFTPELRKKLEEK--QLEYGHKGLRTLALAY---VDESDGDVSHYK 1890
Query: 58 -----DPAKFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEA 112
D KFE D+TFVG+ GMLDPPR EV +AI KC TAGIR IVITGD K TAE
Sbjct: 1891 TDRSEDYVKFE---RDMTFVGLIGMLDPPRPEVRDAIAKCKTAGIRTIVITGDNKNTAET 2061
Query: 113 VCRRIGLMPC-EPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLVN 166
+CR IG+ E G S+TG ELD ++ +K AAV+ A LFSRT+P+HK QLV+
Sbjct: 2062 ICREIGVFGHDEDLTGKSYTGRELDALSHEEKIAAVQRASLFSRTEPTHKSQLVD 2226
>ref|XM_001540282.1| Ajellomyces capsulatus NAm1 sarcoplasmic/endoplasmic reticulum
calcium ATPase 1 (HCAG_04172) partial mRNA
Length = 3051
Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats.
Identities = 77/175 (44%), Positives = 103/175 (58%), Gaps = 9/175 (5%)
Frame = +1
Query: 1 KRCTR-IMCKDGRIVPLTPKILSTVTTKV----NRMSGMEDALRCIAFAF--RPIPDPKQ 53
+RC+ ++ +G V LT K ++ +V NR LR IA A IP P
Sbjct: 1546 ERCSHAVLGPNGHKVALTKKQTQLISQEVVDYGNR------GLRVIALASVDHVIPSPLF 1707
Query: 54 LDLSDPAKFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAV 113
+ +E ++T +G+ GMLDPPR EV +I KC AGIRV+VITGD + TAEA+
Sbjct: 1708 RTAESTKDYAQLEQNMTLIGLVGMLDPPRPEVAASIRKCREAGIRVVVITGDNRNTAEAI 1887
Query: 114 CRRIGLM-PCEPR-EGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLVN 166
CR+IG+ P E +G SFTG E D ++ A K A +NA LFSRT+PSHK QLV+
Sbjct: 1888 CRQIGIFGPHEQNLQGRSFTGKEFDALSDAAKIEAAKNASLFSRTEPSHKSQLVD 2052
>ref|XM_001730367.1| Malassezia globosa CBS 7966 hypothetical protein MGL_2215 partial
mRNA
Length = 2715
Score = 127 bits (318), Expect = 1e-27, Method: Composition-based stats.
Identities = 72/169 (42%), Positives = 100/169 (59%), Gaps = 4/169 (2%)
Frame = +1
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFR---PIPDPKQLDLSD 58
R + + D PLT + + + K+N + LR +A A R +PDP L D
Sbjct: 1288 RSSHVFLNDSEQRPLTDDMRAALHEKINTYANA--GLRVLAIAVRDGMALPDP--LLPLD 1455
Query: 59 PAKFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIG 118
+ + E +L+ VG+ GM DPPR EV +AI C AG+RV++ITGD + TAEA+ R+IG
Sbjct: 1456 ASMYGQYEQNLSLVGLVGMRDPPRPEVVQAIRSCMEAGVRVVMITGDNQRTAEAIGRQIG 1635
Query: 119 LM-PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLVN 166
L P E +G SFTG E D M+P +K + N V+ SRT+PSHK QLV+
Sbjct: 1636 LFGPDEDVQGRSFTGREFDTMSPEKKASVASNVVILSRTEPSHKSQLVD 1782
>gb|AF096871.1|AF096871 Zea mays calcium ATPase (cap1) mRNA, complete cds
Length = 3310
Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats.
Identities = 72/179 (40%), Positives = 101/179 (56%), Gaps = 14/179 (7%)
Frame = +1
Query: 1 KRCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPI----------PD 50
+R + I KDG +VPL K T+ ++ MS +ALRC+ FA++
Sbjct: 1519 ERSSHIQLKDGSVVPLDEKAKRTILASLHEMS--TNALRCLGFAYKEALAEFRTYDGENH 1692
Query: 51 PKQLDLSDPAKFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETA 110
P+ DPA + AIETDL F G+ G+ DPPR EV +AI C AGIRV+VITGD KETA
Sbjct: 1693 PRHNVFVDPANYAAIETDLIFAGLVGLRDPPREEVYDAIEDCRAAGIRVMVITGDNKETA 1872
Query: 111 EAVCRRIGLMPCEPREGLSFTGYELDQ-MTPAQKRAA---VRNAVLFSRTDPSHKMQLV 165
EA+CR IG+ P E ++F + + M K+ A V+ +LFSR +P + + +
Sbjct: 1873 EAICREIGVF--SPDEDITFKSLQGKEFMALEDKKTARLPVKGGLLFSRAEPRQQTRTI 2043
>gb|M25267.1|RATCA2ATPA Rattus norvegicus (clone pHA6) Ca2+ Mg2+-dependent ATPase mRNA, 3'
end
Length = 2311
Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats.
Identities = 71/166 (42%), Positives = 97/166 (58%), Gaps = 2/166 (1%)
Frame = +1
Query: 2 RCTRIMCKDGRIVPLTPKILSTVTTKVNRMSGMEDALRCIAFAFRPIP-DPKQLDLSDPA 60
RCT I + VP+T + + + + D LRC+A A P +++ L D A
Sbjct: 106 RCTHIRVGSTK-VPMTAGVKQKIMSVIREWGSGSDTLRCLALATHDNPLRREEMHLEDSA 282
Query: 61 KFEAIETDLTFVGVCGMLDPPRREVTEAITKCHTAGIRVIVITGDKKETAEAVCRRIGLM 120
F ET+LTFVG GMLDPPR EV ++ C A IRVI+ITGD K TA A+CRRIG+
Sbjct: 283 NFIQYETNLTFVGCVGMLDPPRIEVASSVKLCRQAAIRVIMITGDNKGTAVAICRRIGIF 462
Query: 121 -PCEPREGLSFTGYELDQMTPAQKRAAVRNAVLFSRTDPSHKMQLV 165
E +FTG E D+++P+ +R A NA F+R +PSHK ++V
Sbjct: 463 GQDEDVTSKAFTGREFDELSPSAQRDACLNARCFARVEPSHKSKIV 600
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.323 0.137 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 491072820
Number of extensions: 6369019
Number of successful extensions: 21917
Number of sequences better than 10: 249
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 21865
Number of HSP's successfully gapped: 276
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 16 (7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 78 (34.7 bits)
Query= gi|154331997|ref|NC_009297.1|:subseq(13842,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 4
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
ref|XM_001561641.1| Leishmania braziliensis MHOM/BR/75/M2904 cal... 203 1e-50
emb|AM494941.1| Leishmania braziliensis chromosome 4 203 1e-50
gb|U70540.1|LMU70540 Leishmania mexicana amazonensis organelle-t... 150 2e-34
emb|AL389894.4|LMFLCHR4A Leishmania major Friedlin chromosome 4,... 145 3e-33
ref|XM_883419.1| Leishmania major strain Friedlin organelle-type... 145 3e-33
ref|XM_001462801.1| Leishmania infantum calcium-translocating P-... 142 3e-32
emb|AM502222.1| Leishmania infantum chromosome 4 142 3e-32
gb|AY791850.1| Leishmania donovani sarcoplasmic-endoplasmic reti... 142 3e-32
>ref|XM_001561641.1| Leishmania braziliensis MHOM/BR/75/M2904 calcium-translocating P-type
ATPase (LbrM04_V2.0030) partial mRNA
Length = 3078
Score = 203 bits (517), Expect = 1e-50, Method: Composition-based stats.
Identities = 141/164 (85%), Positives = 141/164 (85%)
Frame = +2
Query: 1 SDALVSCVRMVASYPSHRKYUAPURRRSIACPAWRTPSAASHLPSAPFPTRSNWISLTQR 60
SDALVSCVRMVASYPSHRKY AP RRRSIACPAWRTPSAASHLPSAPFPTRSNWISLTQR
Sbjct: 1574 SDALVSCVRMVASYPSHRKY*AP*RRRSIACPAWRTPSAASHLPSAPFPTRSNWISLTQR 1753
Query: 61 SLKPXXXXXXXXXXXXCWTRRGGRXQRRLPSATQQGFASLSSPVTXXXXXXXCAAESDSC 120
SLKP CWTRRGGR QRRLPSATQQGFASLSSPVT CAAESDSC
Sbjct: 1754 SLKPSRLTSLLLASAACWTRRGGR*QRRLPSATQQGFASLSSPVTRRRRQRRCAAESDSC 1933
Query: 121 HVNRERGLASLATSWIRUPQHRNGRRYGMLCFSVALTPPIRCSW 164
HVNRERGLASLATSWIR PQHRNGRRYGMLCFSVALTPPIRCSW
Sbjct: 1934 HVNRERGLASLATSWIR*PQHRNGRRYGMLCFSVALTPPIRCSW 2065
>emb|AM494941.1| Leishmania braziliensis chromosome 4
Length = 475968
Score = 203 bits (517), Expect = 1e-50, Method: Composition-based stats.
Identities = 141/164 (85%), Positives = 141/164 (85%)
Frame = +3
Query: 1 SDALVSCVRMVASYPSHRKYUAPURRRSIACPAWRTPSAASHLPSAPFPTRSNWISLTQR 60
SDALVSCVRMVASYPSHRKY AP RRRSIACPAWRTPSAASHLPSAPFPTRSNWISLTQR
Sbjct: 13845 SDALVSCVRMVASYPSHRKY*AP*RRRSIACPAWRTPSAASHLPSAPFPTRSNWISLTQR 14024
Query: 61 SLKPXXXXXXXXXXXXCWTRRGGRXQRRLPSATQQGFASLSSPVTXXXXXXXCAAESDSC 120
SLKP CWTRRGGR QRRLPSATQQGFASLSSPVT CAAESDSC
Sbjct: 14025 SLKPSRLTSLLLASAACWTRRGGR*QRRLPSATQQGFASLSSPVTRRRRQRRCAAESDSC 14204
Query: 121 HVNRERGLASLATSWIRUPQHRNGRRYGMLCFSVALTPPIRCSW 164
HVNRERGLASLATSWIR PQHRNGRRYGMLCFSVALTPPIRCSW
Sbjct: 14205 HVNRERGLASLATSWIR*PQHRNGRRYGMLCFSVALTPPIRCSW 14336
>gb|U70540.1|LMU70540 Leishmania mexicana amazonensis organelle-type Ca2+-ATPase gene,
complete cds
Length = 4156
Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats.
Identities = 102/164 (62%), Positives = 112/164 (68%)
Frame = +3
Query: 1 SDALVSCVRMVASYPSHRKYUAPURRRSIACPAWRTPSAASHLPSAPFPTRSNWISLTQR 60
SDALVSC+RMV S+ SHR++ P RR SIACPA R PSA S LP APFPTRSNWI L Q
Sbjct: 2124 SDALVSCLRMVVSHLSHRRW*IP*RRTSIACPALRKPSAVSRLPFAPFPTRSNWICLIQP 2303
Query: 61 SLKPXXXXXXXXXXXXCWTRRGGRXQRRLPSATQQGFASLSSPVTXXXXXXXCAAESDSC 120
SLKP WT RGGR Q R PS QQGFAS SSP T CAA SDSC
Sbjct: 2304 SLKPSTATSRGAGSSAFWTLRGGRWQMRSPSVEQQGFASSSSPATRRRRQRQCAAGSDSC 2483
Query: 121 HVNRERGLASLATSWIRUPQHRNGRRYGMLCFSVALTPPIRCSW 164
H++R+R AS ATSWIR PQH+ GRR +LCFSVA TP I+CSW
Sbjct: 2484 HLSRQRD*ASPATSWIR*PQHKGGRR*AVLCFSVAPTPLIKCSW 2615
>emb|AL389894.4|LMFLCHR4A Leishmania major Friedlin chromosome 4, left end
Length = 225394
Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats.
Identities = 102/164 (62%), Positives = 110/164 (67%)
Frame = +2
Query: 1 SDALVSCVRMVASYPSHRKYUAPURRRSIACPAWRTPSAASHLPSAPFPTRSNWISLTQR 60
S ALVSC+RMV SHRK+ P RR SI CPA R PSA S LP APFPTRSNWI Q
Sbjct: 6209 SVALVSCLRMVTFLLSHRKW*IP*RRTSIVCPAQRRPSAVSLLPFAPFPTRSNWICPIQP 6388
Query: 61 SLKPXXXXXXXXXXXXCWTRRGGRXQRRLPSATQQGFASLSSPVTXXXXXXXCAAESDSC 120
SLKP CWT RGGR Q R PS Q+GFAS SSP T CAAESDSC
Sbjct: 6389 SLKPSRATSRLSVSAACWTLRGGRWQMRSPSVEQRGFASSSSPATRRRQQRQCAAESDSC 6568
Query: 121 HVNRERGLASLATSWIRUPQHRNGRRYGMLCFSVALTPPIRCSW 164
H++R+RG AS A SWIR PQH+ GRR +LCFSVA TPPIRCSW
Sbjct: 6569 HMSRQRG*ASPAMSWIR*PQHKGGRR*AVLCFSVAPTPPIRCSW 6700
>ref|XM_883419.1| Leishmania major strain Friedlin organelle-type calcium ATPase
(LT.01) partial mRNA
Length = 3072
Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats.
Identities = 102/164 (62%), Positives = 110/164 (67%)
Frame = +2
Query: 1 SDALVSCVRMVASYPSHRKYUAPURRRSIACPAWRTPSAASHLPSAPFPTRSNWISLTQR 60
S ALVSC+RMV SHRK+ P RR SI CPA R PSA S LP APFPTRSNWI Q
Sbjct: 1574 SVALVSCLRMVTFLLSHRKW*IP*RRTSIVCPAQRRPSAVSLLPFAPFPTRSNWICPIQP 1753
Query: 61 SLKPXXXXXXXXXXXXCWTRRGGRXQRRLPSATQQGFASLSSPVTXXXXXXXCAAESDSC 120
SLKP CWT RGGR Q R PS Q+GFAS SSP T CAAESDSC
Sbjct: 1754 SLKPSRATSRLSVSAACWTLRGGRWQMRSPSVEQRGFASSSSPATRRRQQRQCAAESDSC 1933
Query: 121 HVNRERGLASLATSWIRUPQHRNGRRYGMLCFSVALTPPIRCSW 164
H++R+RG AS A SWIR PQH+ GRR +LCFSVA TPPIRCSW
Sbjct: 1934 HMSRQRG*ASPAMSWIR*PQHKGGRR*AVLCFSVAPTPPIRCSW 2065
>ref|XM_001462801.1| Leishmania infantum calcium-translocating P-type ATPase (LinJ04.0010)
partial mRNA
Length = 3069
Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats.
Identities = 101/164 (61%), Positives = 113/164 (68%)
Frame = +2
Query: 1 SDALVSCVRMVASYPSHRKYUAPURRRSIACPAWRTPSAASHLPSAPFPTRSNWISLTQR 60
SDALVSC+RMV + SH+K+ RR SIACPA R PSA S LP APFPTRSN I L Q
Sbjct: 1574 SDALVSCLRMVTFHLSHQKW*IL*RRTSIACPAQRKPSAVSRLPFAPFPTRSN*ICLIQP 1753
Query: 61 SLKPXXXXXXXXXXXXCWTRRGGRXQRRLPSATQQGFASLSSPVTXXXXXXXCAAESDSC 120
SLKP CWT RGGR Q + PSA ++GFAS SSP T CAAES SC
Sbjct: 1754 SLKPSRATSLLSASAACWTLRGGRWQMQSPSAERRGFASSSSPATRRRQQRQCAAESGSC 1933
Query: 121 HVNRERGLASLATSWIRUPQHRNGRRYGMLCFSVALTPPIRCSW 164
H++R+RG AS ATSWIR PQH+ GRR +LCFSVA TPPIRCSW
Sbjct: 1934 HMSRQRG*ASPATSWIR*PQHKGGRR*AVLCFSVAPTPPIRCSW 2065
>emb|AM502222.1| Leishmania infantum chromosome 4
Length = 481046
Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats.
Identities = 101/164 (61%), Positives = 113/164 (68%)
Frame = +1
Query: 1 SDALVSCVRMVASYPSHRKYUAPURRRSIACPAWRTPSAASHLPSAPFPTRSNWISLTQR 60
SDALVSC+RMV + SH+K+ RR SIACPA R PSA S LP APFPTRSN I L Q
Sbjct: 7828 SDALVSCLRMVTFHLSHQKW*IL*RRTSIACPAQRKPSAVSRLPFAPFPTRSN*ICLIQP 8007
Query: 61 SLKPXXXXXXXXXXXXCWTRRGGRXQRRLPSATQQGFASLSSPVTXXXXXXXCAAESDSC 120
SLKP CWT RGGR Q + PSA ++GFAS SSP T CAAES SC
Sbjct: 8008 SLKPSRATSLLSASAACWTLRGGRWQMQSPSAERRGFASSSSPATRRRQQRQCAAESGSC 8187
Query: 121 HVNRERGLASLATSWIRUPQHRNGRRYGMLCFSVALTPPIRCSW 164
H++R+RG AS ATSWIR PQH+ GRR +LCFSVA TPPIRCSW
Sbjct: 8188 HMSRQRG*ASPATSWIR*PQHKGGRR*AVLCFSVAPTPPIRCSW 8319
>gb|AY791850.1| Leishmania donovani sarcoplasmic-endoplasmic reticulum calcium ATPase
(serca) gene, complete cds
Length = 3763
Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats.
Identities = 101/164 (61%), Positives = 113/164 (68%)
Frame = +1
Query: 1 SDALVSCVRMVASYPSHRKYUAPURRRSIACPAWRTPSAASHLPSAPFPTRSNWISLTQR 60
SDALVSC+RMV + SH+K+ RR SIACPA R PSA S LP APFPTRSN I L Q
Sbjct: 1753 SDALVSCLRMVTFHLSHQKW*IL*RRTSIACPAQRKPSAVSRLPFAPFPTRSN*ICLIQP 1932
Query: 61 SLKPXXXXXXXXXXXXCWTRRGGRXQRRLPSATQQGFASLSSPVTXXXXXXXCAAESDSC 120
SLKP CWT RGGR Q + PSA ++GFAS SSP T CAAES SC
Sbjct: 1933 SLKPSRATSLLSASAACWTLRGGRWQMQSPSAERRGFASSSSPATRRRQQRQCAAESGSC 2112
Query: 121 HVNRERGLASLATSWIRUPQHRNGRRYGMLCFSVALTPPIRCSW 164
H++R+RG AS ATSWIR PQH+ GRR +LCFSVA TPPIRCSW
Sbjct: 2113 HMSRQRG*ASPATSWIR*PQHKGGRR*AVLCFSVAPTPPIRCSW 2244
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.326 0.132 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 609121711
Number of extensions: 9283692
Number of successful extensions: 104314
Number of sequences better than 10: 10
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 104239
Number of HSP's successfully gapped: 11
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 15 (7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.0 bits)
S2: 78 (34.7 bits)
Query= gi|154331997|ref|NC_009297.1|:subseq(337833,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 4:[revcomp]
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
emb|AM494941.1| Leishmania braziliensis chromosome 4 239 2e-61
>emb|AM494941.1| Leishmania braziliensis chromosome 4
Length = 475968
Score = 239 bits (611), Expect = 2e-61, Method: Composition-based stats.
Identities = 142/166 (85%), Positives = 142/166 (85%)
Frame = -1
Query: 1 LGGPLGCVNRCXXXXXXXXXXYVEYLDAARACRGKRAGVARAFCTPVVGGMLASQNMTRV 60
LGGPLGCVNRC YVEYLDAARACRGKRAGVARAFCTPVVGGMLASQNMTRV
Sbjct: 138135 LGGPLGCVNRCRGFHGF*RGGYVEYLDAARACRGKRAGVARAFCTPVVGGMLASQNMTRV 137956
Query: 61 QRCAAAVVFPSCPAEVFRVFLCRGVVVGLLFASFKTCFGGGGPGLFRHPALRSVGQGKTC 120
QRCAAAVVFPSCPAEVFRVFLCRGVVVGLLFASFKTCFGGGGPGLFRHPALRSVGQGKTC
Sbjct: 137955 QRCAAAVVFPSCPAEVFRVFLCRGVVVGLLFASFKTCFGGGGPGLFRHPALRSVGQGKTC 137776
Query: 121 LAAQEMGLRDAPFLVAARVLGWFXXXXXXXXXXXXXXPWRSLPPAH 166
LAAQEMGLRDAPFLVAARVLGWF PWRSLPPAH
Sbjct: 137775 LAAQEMGLRDAPFLVAARVLGWFACGCAVGVGGRAVRPWRSLPPAH 137638
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.330 0.144 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 587410325
Number of extensions: 9229041
Number of successful extensions: 44147
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 44135
Number of HSP's successfully gapped: 0
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 15 (7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.0 bits)
S2: 78 (34.7 bits)
Query= gi|154331997|ref|NC_009297.1|:subseq(337833,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 4:[revcomp]
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
emb|AM494941.1| Leishmania braziliensis chromosome 4 233 1e-59
ref|XM_973436.1| PREDICTED: Mus musculus hypothetical LOC674283 ... 37 3.0
>emb|AM494941.1| Leishmania braziliensis chromosome 4
Length = 475968
Score = 233 bits (594), Expect = 1e-59, Method: Composition-based stats.
Identities = 137/166 (82%), Positives = 137/166 (82%)
Frame = -2
Query: 1 WGDPWVVXIDAVVFMGFEGGDTXNTLMRRVRAGEKGQGWRGRFAPPSWAECSPVRTURAY 60
WGDPWVV IDAVVFMGFEGGDT NTLMRRVRAGEKGQGWRGRFAPPSWAECSPVRT RAY
Sbjct: 138134 WGDPWVV*IDAVVFMGFEGGDT*NTLMRRVRAGEKGQGWRGRFAPPSWAECSPVRT*RAY 137955
Query: 61 RGVLLLWFSLRVQQRFSAFFCAGGWWWVFCSPRSKPVLGGGARGFSGTPLCARXGKGKRA 120
RGVLLLWFSLRVQQRFSAFFCAGGWWWVFCSPRSKPVLGGGARGFSGTPLCAR GKGKRA
Sbjct: 137954 RGVLLLWFSLRVQQRFSAFFCAGGWWWVFCSPRSKPVLGGGARGFSGTPLCAR*GKGKRA 137775
Query: 121 WPRRKWVCGMPLFSWRXXXXXXXXXXXXXXXXXXXXXXXXXCPLRT 166
WPRRKWVCGMPLFSWR CPLRT
Sbjct: 137774 WPRRKWVCGMPLFSWRLGFWGGLHAAALWGWGAGLCALGAACPLRT 137637
>ref|XM_973436.1| PREDICTED: Mus musculus hypothetical LOC674283 (LOC674283), mRNA
Length = 647
Score = 36.6 bits (83), Expect = 3.0, Method: Composition-based stats.
Identities = 25/66 (37%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Frame = -2
Query: 48 WAECSPVRTURAYRGVLLL-WFSLRVQQRFSAFFCAGGWWWVFCSP----RSKPVLGGGA 102
WA S + G LLL F R ++ FS+FF W + C P R++PV GG
Sbjct: 394 WASGSYAQAPSNSEGTLLLNAFRSRCRRMFSSFFSTKPAWMILCFPP***RTEPVKGGSQ 215
Query: 103 RGFSGT 108
RG +GT
Sbjct: 214 RGITGT 197
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.337 0.149 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 702497306
Number of extensions: 14425337
Number of successful extensions: 173280
Number of sequences better than 10: 11
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 172351
Number of HSP's successfully gapped: 13
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 15 (7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (19.6 bits)
S2: 78 (34.7 bits)
Query= gi|154331997|ref|NC_009297.1|:subseq(337833,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 4:[revcomp]
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
emb|AM494941.1| Leishmania braziliensis chromosome 4 162 3e-38
>emb|AM494941.1| Leishmania braziliensis chromosome 4
Length = 475968
Score = 162 bits (411), Expect = 3e-38, Method: Composition-based stats.
Identities = 106/144 (73%), Positives = 106/144 (73%)
Frame = -3
Query: 1 GGTPGLCKSMPWFSWVLKGGIRRIPUCGACVPGKKGRGGAGVLHPRRGRNARQSEHDART 60
GGTPGLCKSMPWFSWVLKGGIRRIP CGACVPGKKGRGGAGVLHPRRGRNARQSEHDART
Sbjct: 138133 GGTPGLCKSMPWFSWVLKGGIRRIP*CGACVPGKKGRGGAGVLHPRRGRNARQSEHDART 137954
Query: 61 EVCCCCGFPFVSSXXXXXXXXXXXXXXXXXXXXQNLXXXXXXXXXXXXXXXXXRARENVL 120
EVCCCCGFPFVSS QNL RARENVL
Sbjct: 137953 EVCCCCGFPFVSSRGFPRFFVQGGGGGSFVRLVQNLFWGGGPGAFPAPRFALGRARENVL 137774
Query: 121 GRAGNGFAGCPFSRGGSGFGVVCM 144
GRAGNGFAGCPFSRGGSGFGVVCM
Sbjct: 137773 GRAGNGFAGCPFSRGGSGFGVVCM 137702
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.326 0.145 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 569120576
Number of extensions: 9858291
Number of successful extensions: 159272
Number of sequences better than 10: 4
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 158559
Number of HSP's successfully gapped: 4
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 15 (7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.0 bits)
S2: 78 (34.7 bits)
Query= gi|154331997|ref|NC_009297.1|:subseq(359942,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 4:[revcomp]
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
emb|AM494941.1| Leishmania braziliensis chromosome 4 255 3e-66
emb|AL389894.4|LMFLCHR4A Leishmania major Friedlin chromosome 4,... 62 8e-08
ref|XM_001561669.1| Leishmania braziliensis MHOM/BR/75/M2904 hyp... 54 1e-05
emb|AM502222.1| Leishmania infantum chromosome 4 43 0.005
ref|XM_001462830.1| Leishmania infantum hypothetical protein, co... 42 0.095
ref|XM_883451.1| Leishmania major strain Friedlin hypothetical p... 41 0.15
>emb|AM494941.1| Leishmania braziliensis chromosome 4
Length = 475968
Score = 255 bits (652), Expect = 3e-66, Method: Composition-based stats.
Identities = 152/166 (91%), Positives = 152/166 (91%)
Frame = -3
Query: 1 GGDIRGXVMTRVGRKLEDRADSEVVESFAAKKGWLFCGAUEGDVRVCVCAVFRWPLSFXX 60
GGDIRG VMTRVGRKLEDRADSEVVESFAAKKGWLFCGA EGDVRVCVCAVFRWPLSF
Sbjct: 116026 GGDIRG*VMTRVGRKLEDRADSEVVESFAAKKGWLFCGA*EGDVRVCVCAVFRWPLSFVV 115847
Query: 61 XXXXXXXXXDGGKGECSHGEAYVGIAVHARVRDEKGAKGSSVTQERLWPGVGRGRHIGAH 120
DGGKGECSHGEAYVGIAVHARVRDEKGAKGSSVTQERLWPGVGRGRHIGAH
Sbjct: 115846 A*LAVLLSADGGKGECSHGEAYVGIAVHARVRDEKGAKGSSVTQERLWPGVGRGRHIGAH 115667
Query: 121 VCRLSRLVSACVYRRRADSRQSGASCGSRQPSASESRARQAYTDUG 166
VCRLSRLVSACVYRRRADSRQSGASCGSRQPSASESRARQAYTD G
Sbjct: 115666 VCRLSRLVSACVYRRRADSRQSGASCGSRQPSASESRARQAYTD*G 115529
>emb|AL389894.4|LMFLCHR4A Leishmania major Friedlin chromosome 4, left end
Length = 225394
Score = 61.6 bits (148), Expect = 8e-08, Method: Composition-based stats.
Identities = 46/105 (43%), Positives = 55/105 (52%), Gaps = 9/105 (8%)
Frame = -2
Query: 71 GGKGECSHGEAYVGIAVHARVRDEKGAKGSSVTQERLWPGVGRGRHIGA--------HV- 121
GG+G C H +AY G+ H ++DE G V R G RG H G HV
Sbjct: 102660 GGEGRCPHNDAYGGMFAHGFLKDEGGQMVVVVVSCRTGRGCCRGYHTGGGGGGGGRGHVS 102481
Query: 122 CRLSRLVSACVYRRRADSRQSGASCGSRQPSASESRARQAYTDUG 166
L + SAC RR DS ++GA CGSR PSA+ ARQAYTD G
Sbjct: 102480 VDLGQRFSACACRRPVDSHRTGACCGSRPPSAAALPARQAYTDRG 102346
>ref|XM_001561669.1| Leishmania braziliensis MHOM/BR/75/M2904 hypothetical protein,
conserved (LbrM04_V2.0340) partial mRNA
Length = 783
Score = 54.3 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 36/36 (100%), Positives = 36/36 (100%)
Frame = -3
Query: 129 SACVYRRRADSRQSGASCGSRQPSASESRARQAYTD 164
SACVYRRRADSRQSGASCGSRQPSASESRARQAYTD
Sbjct: 781 SACVYRRRADSRQSGASCGSRQPSASESRARQAYTD 674
>emb|AM502222.1| Leishmania infantum chromosome 4
Length = 481046
Score = 42.7 bits (99), Expect(2) = 0.005, Method: Composition-based stats.
Identities = 27/38 (71%), Positives = 30/38 (78%)
Frame = -2
Query: 129 SACVYRRRADSRQSGASCGSRQPSASESRARQAYTDUG 166
SAC RR DSR++GAS GSR PSA+ES ARQAYTD G
Sbjct: 95926 SACAGRRLVDSRRTGASYGSRPPSAAESPARQAYTD*G 95813
Score = 21.9 bits (45), Expect(2) = 0.005, Method: Composition-based stats.
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = -1
Query: 71 GGKGECSHGEAYVGIAVHARVRDEKG 96
GGKG C + Y G+ ++DE G
Sbjct: 96113 GGKGRCPDNDEYGGMFARGFLKDEAG 96036
>ref|XM_001462830.1| Leishmania infantum hypothetical protein, conserved (LinJ04.0300)
partial mRNA
Length = 810
Score = 41.6 bits (96), Expect = 0.095, Method: Composition-based stats.
Identities = 26/36 (72%), Positives = 29/36 (80%)
Frame = -3
Query: 129 SACVYRRRADSRQSGASCGSRQPSASESRARQAYTD 164
SAC RR DSR++GAS GSR PSA+ES ARQAYTD
Sbjct: 808 SACAGRRLVDSRRTGASYGSRPPSAAESPARQAYTD 701
>ref|XM_883451.1| Leishmania major strain Friedlin hypothetical protein (L5769.02)
partial mRNA
Length = 759
Score = 40.8 bits (94), Expect = 0.15, Method: Composition-based stats.
Identities = 24/38 (63%), Positives = 27/38 (71%)
Frame = -3
Query: 129 SACVYRRRADSRQSGASCGSRQPSASESRARQAYTDUG 166
SAC RR DS ++GA CGSR PSA+ ARQAYTD G
Sbjct: 757 SACACRRPVDSHRTGACCGSRPPSAAALPARQAYTDRG 644
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.324 0.137 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 532045545
Number of extensions: 8206776
Number of successful extensions: 68285
Number of sequences better than 10: 5
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 68237
Number of HSP's successfully gapped: 6
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 15 (7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.0 bits)
S2: 78 (34.7 bits)
Query= gi|154331997|ref|NC_009297.1|:subseq(359942,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 4:[revcomp]
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
emb|AM494941.1| Leishmania braziliensis chromosome 4 225 3e-57
ref|XM_001561669.1| Leishmania braziliensis MHOM/BR/75/M2904 hyp... 79 6e-13
emb|AM502222.1| Leishmania infantum chromosome 4 61 1e-07
ref|XM_001462830.1| Leishmania infantum hypothetical protein, co... 55 7e-06
emb|AL389894.4|LMFLCHR4A Leishmania major Friedlin chromosome 4,... 55 9e-06
ref|XM_883451.1| Leishmania major strain Friedlin hypothetical p... 53 3e-05
>emb|AM494941.1| Leishmania braziliensis chromosome 4
Length = 475968
Score = 225 bits (574), Expect = 3e-57, Method: Composition-based stats.
Identities = 128/166 (77%), Positives = 128/166 (77%)
Frame = -1
Query: 1 VATXGDRLURGWGVNXRIGQTQXXXXXXXXXXXXXXXXLERGTCVCVCVLSSGGHXXXXX 60
VAT GDRL RGWGVN RIGQTQ LERGTCVCVCVLSSGGH
Sbjct: 116025 VAT*GDRL*RGWGVN*RIGQTQRSSKVSRRRRGGCSVGLERGTCVCVCVLSSGGHCHLLL 115846
Query: 61 XXXXXXXXXMEERGNAHTAKRMXVXLCMHVUGMRKAPRGVPUHRSGCGQVWGGGATSGHT 120
MEERGNAHTAKRM V LCMHV GMRKAPRGVP HRSGCGQVWGGGATSGHT
Sbjct: 115845 RSWRCCCRRMEERGNAHTAKRM*V*LCMHV*GMRKAPRGVP*HRSGCGQVWGGGATSGHT 115666
Query: 121 SVDUAASSVRVCIGVELIRAKVAHLAEVGSLLPQNPELARRILIEG 166
SVD AASSVRVCIGVELIRAKVAHLAEVGSLLPQNPELARRILIEG
Sbjct: 115665 SVD*AASSVRVCIGVELIRAKVAHLAEVGSLLPQNPELARRILIEG 115528
>ref|XM_001561669.1| Leishmania braziliensis MHOM/BR/75/M2904 hypothetical protein,
conserved (LbrM04_V2.0340) partial mRNA
Length = 783
Score = 78.6 bits (192), Expect = 6e-13, Method: Composition-based stats.
Identities = 39/39 (100%), Positives = 39/39 (100%)
Frame = -1
Query: 128 SVRVCIGVELIRAKVAHLAEVGSLLPQNPELARRILIEG 166
SVRVCIGVELIRAKVAHLAEVGSLLPQNPELARRILIEG
Sbjct: 783 SVRVCIGVELIRAKVAHLAEVGSLLPQNPELARRILIEG 667
>emb|AM502222.1| Leishmania infantum chromosome 4
Length = 481046
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 34/50 (68%), Positives = 38/50 (76%)
Frame = -3
Query: 116 TSGHTSVDUAASSVRVCIGVELIRAKVAHLAEVGSLLPQNPELARRILIE 165
T G VD A +SVRV +GV LIRA+ AHL EVG LLPQN +LARRILIE
Sbjct: 95964 TGGTYRVDWAHASVRVQVGV*LIRAEPAHLTEVGRLLPQNRQLARRILIE 95815
>ref|XM_001462830.1| Leishmania infantum hypothetical protein, conserved (LinJ04.0300)
partial mRNA
Length = 810
Score = 55.1 bits (131), Expect = 7e-06, Method: Composition-based stats.
Identities = 29/38 (76%), Positives = 32/38 (84%)
Frame = -1
Query: 128 SVRVCIGVELIRAKVAHLAEVGSLLPQNPELARRILIE 165
SVRV +GV LIRA+ AHL EVG LLPQN +LARRILIE
Sbjct: 810 SVRVQVGV*LIRAEPAHLTEVGRLLPQNRQLARRILIE 697
>emb|AL389894.4|LMFLCHR4A Leishmania major Friedlin chromosome 4, left end
Length = 225394
Score = 54.7 bits (130), Expect = 9e-06, Method: Composition-based stats.
Identities = 28/41 (68%), Positives = 35/41 (85%)
Frame = -3
Query: 125 AASSVRVCIGVELIRAKVAHLAEVGSLLPQNPELARRILIE 165
A +SVRV +GV+LIR + AH+AEVG LLPQ+ +LARRILIE
Sbjct: 102470 ANASVRVHVGVQLIRTEPAHVAEVGRLLPQHCQLARRILIE 102348
>ref|XM_883451.1| Leishmania major strain Friedlin hypothetical protein (L5769.02)
partial mRNA
Length = 759
Score = 53.1 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 27/38 (71%), Positives = 33/38 (86%)
Frame = -1
Query: 128 SVRVCIGVELIRAKVAHLAEVGSLLPQNPELARRILIE 165
SVRV +GV+LIR + AH+AEVG LLPQ+ +LARRILIE
Sbjct: 759 SVRVHVGVQLIRTEPAHVAEVGRLLPQHCQLARRILIE 646
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.338 0.147 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 448193610
Number of extensions: 6559515
Number of successful extensions: 753165
Number of sequences better than 10: 2
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 734796
Number of HSP's successfully gapped: 4
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 15 (7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (19.6 bits)
S2: 78 (34.7 bits)
Query= gi|154331997|ref|NC_009297.1|:subseq(359942,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 4:[revcomp]
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
emb|AM494941.1| Leishmania braziliensis chromosome 4 187 9e-46
ref|XM_001561669.1| Leishmania braziliensis MHOM/BR/75/M2904 hyp... 67 2e-09
emb|AM502222.1| Leishmania infantum chromosome 4 52 5e-05
emb|AL389894.4|LMFLCHR4A Leishmania major Friedlin chromosome 4,... 51 1e-04
ref|XM_001462830.1| Leishmania infantum hypothetical protein, co... 48 0.001
ref|XM_883451.1| Leishmania major strain Friedlin hypothetical p... 47 0.002
ref|XM_805886.1| Trypanosoma cruzi strain CL Brener hypothetical... 39 0.57
>emb|AM494941.1| Leishmania braziliensis chromosome 4
Length = 475968
Score = 187 bits (475), Expect = 9e-46, Method: Composition-based stats.
Identities = 117/166 (70%), Positives = 117/166 (70%)
Frame = -2
Query: 1 WRHKGIGYDAXXXXXXXXXXXXXXXXXXXEEGVAVLWGLRGGRXXXXXXXXXXXXXXXXX 60
WRHKGIGYDA EEGVAVLWGLRGGR
Sbjct: 116024 WRHKGIGYDAGGA*TRG*GRLRGRRKFRGEEGVAVLWGLRGGRACVCVCCLQVAIVICCC 115845
Query: 61 XXXXXXXXXWRKGGMLTRRSVCRYSCACTCEGUERRQGEFRDTGAAVARCGEGAPHRGTR 120
WRKGGMLTRRSVCRYSCACTCEG ERRQGEFRDTGAAVARCGEGAPHRGTR
Sbjct: 115844 VVGGVVVGGWRKGGMLTRRSVCRYSCACTCEG*ERRQGEFRDTGAAVARCGEGAPHRGTR 115665
Query: 121 LSIEPPRQCVCVSASSUFAPKWRILRKXAAFCLRIPSSPGVYULRA 166
LSIEPPRQCVCVSASS FAPKWRILRK AAFCLRIPSSPGVY LRA
Sbjct: 115664 LSIEPPRQCVCVSASS*FAPKWRILRK*AAFCLRIPSSPGVY*LRA 115527
>ref|XM_001561669.1| Leishmania braziliensis MHOM/BR/75/M2904 hypothetical protein,
conserved (LbrM04_V2.0340) partial mRNA
Length = 783
Score = 67.0 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 36/39 (92%), Positives = 36/39 (92%)
Frame = -2
Query: 128 QCVCVSASSUFAPKWRILRKXAAFCLRIPSSPGVYULRA 166
QCVCVSASS FAPKWRILRK AAFCLRIPSSPGVY LRA
Sbjct: 782 QCVCVSASS*FAPKWRILRK*AAFCLRIPSSPGVY*LRA 666
>emb|AM502222.1| Leishmania infantum chromosome 4
Length = 481046
Score = 52.4 bits (124), Expect = 5e-05, Method: Composition-based stats.
Identities = 35/57 (61%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Frame = -1
Query: 110 CGEGAPHRGTRLSIEPPR-QCVCVSASSUFAPKWRILRKXAAFCLRIPSSPGVYULR 165
C G P G + P QCVC SASS FAP RILRK AAFC RI SSPGVY LR
Sbjct: 95984 CCRGYPTPGAHIGWTGPMLQCVCRSASS*FAPNRRILRK*AAFCRRIASSPGVY*LR 95814
>emb|AL389894.4|LMFLCHR4A Leishmania major Friedlin chromosome 4, left end
Length = 225394
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 27/38 (71%), Positives = 29/38 (76%)
Frame = -1
Query: 125 PPRQCVCVSASSUFAPKWRILRKXAAFCLRIPSSPGVY 162
P QCVC+SASS FAP R+LRK AAFC I SSPGVY
Sbjct: 102469 PTLQCVCMSASS*FAPNRRMLRK*AAFCRSIASSPGVY 102356
>ref|XM_001462830.1| Leishmania infantum hypothetical protein, conserved (LinJ04.0300)
partial mRNA
Length = 810
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 30/38 (78%), Positives = 30/38 (78%)
Frame = -2
Query: 128 QCVCVSASSUFAPKWRILRKXAAFCLRIPSSPGVYULR 165
QCVC SASS FAP RILRK AAFC RI SSPGVY LR
Sbjct: 809 QCVCRSASS*FAPNRRILRK*AAFCRRIASSPGVY*LR 696
>ref|XM_883451.1| Leishmania major strain Friedlin hypothetical protein (L5769.02)
partial mRNA
Length = 759
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 26/35 (74%), Positives = 28/35 (80%)
Frame = -2
Query: 128 QCVCVSASSUFAPKWRILRKXAAFCLRIPSSPGVY 162
QCVC+SASS FAP R+LRK AAFC I SSPGVY
Sbjct: 758 QCVCMSASS*FAPNRRMLRK*AAFCRSIASSPGVY 654
>ref|XM_805886.1| Trypanosoma cruzi strain CL Brener hypothetical protein partial
mRNA
Length = 840
Score = 38.9 bits (89), Expect = 0.57, Method: Composition-based stats.
Identities = 22/36 (61%), Positives = 24/36 (66%)
Frame = -2
Query: 129 CVCVSASSUFAPKWRILRKXAAFCLRIPSSPGVYUL 164
CVC SAS AP WR+LRK AAFC I +S VY L
Sbjct: 836 CVCTSASC*LAPSWRMLRKYAAFCRSITNSSCVYCL 729
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.329 0.142 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 540143050
Number of extensions: 8989440
Number of successful extensions: 132564
Number of sequences better than 10: 2
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 132280
Number of HSP's successfully gapped: 3
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 15 (7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.0 bits)
S2: 78 (34.7 bits)
Query= gi|154331997|ref|NC_009297.1|:subseq(403818,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 4
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
emb|AM494941.1| Leishmania braziliensis chromosome 4 178 4e-43
>emb|AM494941.1| Leishmania braziliensis chromosome 4
Length = 475968
Score = 178 bits (452), Expect = 4e-43, Method: Composition-based stats.
Identities = 111/166 (66%), Positives = 111/166 (66%)
Frame = +1
Query: 1 KEARPSPLPQYGPSAREEWRGVXXXXXXXXXXXXXXNKSTRTEIIEXXXXXXXXXXXXPA 60
KEARPSPLPQYGPSAREEWRGV NKSTRTEIIE PA
Sbjct: 403819 KEARPSPLPQYGPSAREEWRGVASARR*SRAMRERRNKSTRTEIIERKGGGGGRRAAKPA 403998
Query: 61 FPPTVSPHVPCFXXXXXXXXXXXXAEENKGMXXXXXXXXXXXXXXXXARNDRHTTARHPR 120
FPPTVSPHVPCF AEENKGM ARNDRHTTARHPR
Sbjct: 403999 FPPTVSPHVPCFGV*VWSTS*GSGAEENKGMGRGIQWRGGERE*EREARNDRHTTARHPR 404178
Query: 121 LCTVADSPPYAALGALRAHTVCIRCFAPFRCFLLGWALRRXMRGKA 166
LCTVADSPPYAALGALRAHTVCIRCFAPFRCFLLGWALRR MRGKA
Sbjct: 404179 LCTVADSPPYAALGALRAHTVCIRCFAPFRCFLLGWALRR*MRGKA 404316
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.328 0.139 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 507446207
Number of extensions: 6134495
Number of successful extensions: 44967
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 44965
Number of HSP's successfully gapped: 0
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 15 (7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.0 bits)
S2: 78 (34.7 bits)
Query= gi|154331997|ref|NC_009297.1|:subseq(403818,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 4
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
emb|AM494941.1| Leishmania braziliensis chromosome 4 221 7e-56
ref|XM_001970598.1| Drosophila erecta GG23278 (Dere\GG23278), mRNA 36 3.4
>emb|AM494941.1| Leishmania braziliensis chromosome 4
Length = 475968
Score = 221 bits (563), Expect = 7e-56, Method: Composition-based stats.
Identities = 134/166 (80%), Positives = 134/166 (80%)
Frame = +2
Query: 1 RKHAPPPSPSTAHLRERNGGVXPARVGDRGRUEKDGTNRQEQKXLKEREGGGEDGQQSRR 60
RKHAPPPSPSTAHLRERNGGV PARVGDRGR EKDGTNRQEQK LKEREGGGEDGQQSRR
Sbjct: 403820 RKHAPPPSPSTAHLRERNGGV*PARVGDRGR*EKDGTNRQEQK*LKEREGGGEDGQQSRR 403999
Query: 61 FPRLFHHTCPVSVCECGVLLRGAVRRRIKAWXXXXXXXXXXXXXXXXXXMTDTPRRATLA 120
FPRLFHHTCPVSVCECGVLLRGAVRRRIKAW MTDTPRRATLA
Sbjct: 404000 FPRLFHHTCPVSVCECGVLLRGAVRRRIKAWEEEFSGGEGKGSKSERRGMTDTPRRATLA 404179
Query: 121 SAQXXXXXXXXXXARSEPTLFALGVLLRSVVFFLDGRUEGKCAAKQ 166
SAQ ARSEPTLFALGVLLRSVVFFLDGR EGKCAAKQ
Sbjct: 404180 SAQLPTPRPTPLLARSEPTLFALGVLLRSVVFFLDGR*EGKCAAKQ 404317
>ref|XM_001970598.1| Drosophila erecta GG23278 (Dere\GG23278), mRNA
Length = 1992
Score = 36.2 bits (82), Expect = 3.4, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 28/50 (56%)
Frame = +1
Query: 34 KDGTNRQEQKXLKEREGGGEDGQQSRRFPRLFHHTCPVSVCECGVLLRGA 83
KDG + +E K K+ E E+ Q+ + P++FHH V + E + + GA
Sbjct: 973 KDGDDEKEDKVQKKTESDTENKQEEPKLPKVFHHQSSVILLETIMSVAGA 1122
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.328 0.141 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 476150429
Number of extensions: 6081859
Number of successful extensions: 75202
Number of sequences better than 10: 6
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 74952
Number of HSP's successfully gapped: 6
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 15 (7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.0 bits)
S2: 78 (34.7 bits)
Query= gi|154331997|ref|NC_009297.1|:subseq(403818,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 4
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
emb|AM494941.1| Leishmania braziliensis chromosome 4 247 8e-64
>emb|AM494941.1| Leishmania braziliensis chromosome 4
Length = 475968
Score = 247 bits (631), Expect = 8e-64, Method: Composition-based stats.
Identities = 149/166 (89%), Positives = 149/166 (89%)
Frame = +3
Query: 1 GSTPLPPPPVRPICARGMEGCSQRASVIEGDERKTEQIDXXXXXXXXXXXXXXTGSKAGV 60
GSTPLPPPPVRPICARGMEGCSQRASVIEGDERKTEQID TGSKAGV
Sbjct: 403821 GSTPLPPPPVRPICARGMEGCSQRASVIEGDERKTEQIDKNRNN*KKGRGGGKTGSKAGV 404000
Query: 61 SPDCFTTRALFRCVSVEYFLGERCGGEXRHGKRNSVEGRGKGVRARGEEUQTHHGAPPSP 120
SPDCFTTRALFRCVSVEYFLGERCGGE RHGKRNSVEGRGKGVRARGEE QTHHGAPPSP
Sbjct: 404001 SPDCFTTRALFRCVSVEYFLGERCGGE*RHGKRNSVEGRGKGVRARGEE*QTHHGAPPSP 404180
Query: 121 LHSCRLPALRRSWRAQSPHCLHXVFCSVPLFSSWMGAEKVNARQSR 166
LHSCRLPALRRSWRAQSPHCLH VFCSVPLFSSWMGAEKVNARQSR
Sbjct: 404181 LHSCRLPALRRSWRAQSPHCLH*VFCSVPLFSSWMGAEKVNARQSR 404318
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.326 0.140 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 737475376
Number of extensions: 13577147
Number of successful extensions: 173308
Number of sequences better than 10: 5
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 172226
Number of HSP's successfully gapped: 5
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 15 (7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.0 bits)
S2: 78 (34.7 bits)
Query= gi|154332242|ref|NC_009298.1|:subseq(147385,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 5
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
emb|AM494942.1| Leishmania braziliensis chromosome 5 144 1e-32
ref|XM_001561809.1| Leishmania braziliensis MHOM/BR/75/M2904 hyp... 68 9e-10
ref|XM_001687469.1| Leishmania major strain Friedlin hypothetica... 35 6.4
>emb|AM494942.1| Leishmania braziliensis chromosome 5
Length = 459355
Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats.
Identities = 114/166 (68%), Positives = 114/166 (68%)
Frame = +2
Query: 1 HRXAATHSVTDTPVPSAKRQSRLSLMYCISARFYSPPPSLSSSHQGRLRWSACACVERXX 60
HR AATHSVTDTPVPSAKRQSRLSLMYCISARFYSPPPSLSSSHQGRLRWSACACVER
Sbjct: 147386 HR*AATHSVTDTPVPSAKRQSRLSLMYCISARFYSPPPSLSSSHQGRLRWSACACVERLS 147565
Query: 61 XXXXXXXXXXXXFTSHVIHMAARAADVREAHQHDVSLACRSPSPLRRAMCCSSLQXXXXX 120
FTSHVIHMAARAADVREAHQHDVSLACRSPSPLRRAMCCSSLQ
Sbjct: 147566 LAPPPLPLRCPLFTSHVIHMAARAADVREAHQHDVSLACRSPSPLRRAMCCSSLQAAERA 147745
Query: 121 XXXXXXXXXXXGTLVXXXXXXXXXXXXXXXXXXXXVLASKUEGHVR 166
GTLV VLASK EGHVR
Sbjct: 147746 AASRCSRRPPRGTLVAAARRHHRRQSRAAGAHRAAVLASK*EGHVR 147883
>ref|XM_001561809.1| Leishmania braziliensis MHOM/BR/75/M2904 hypothetical protein,
conserved (LbrM05_V2.0450) partial mRNA
Length = 2523
Score = 68.2 bits (165), Expect = 9e-10, Method: Composition-based stats.
Identities = 53/90 (58%), Positives = 53/90 (58%)
Frame = +3
Query: 77 VIHMAARAADVREAHQHDVSLACRSPSPLRRAMCCSSLQXXXXXXXXXXXXXXXXGTLVX 136
VIHMAARAADVREAHQHDVSLACRSPSPLRRAMCCSSLQ GTLV
Sbjct: 3 VIHMAARAADVREAHQHDVSLACRSPSPLRRAMCCSSLQAAERAAASRCSRRPPRGTLVA 182
Query: 137 XXXXXXXXXXXXXXXXXXXVLASKUEGHVR 166
VLASK EGHVR
Sbjct: 183 AARRHHRRQSRAAGAHRAAVLASK*EGHVR 272
>ref|XM_001687469.1| Leishmania major strain Friedlin hypothetical protein, conserved
(LmjF05.0440) partial mRNA
Length = 2565
Score = 35.4 bits (80), Expect = 6.4, Method: Composition-based stats.
Identities = 32/90 (35%), Positives = 40/90 (44%)
Frame = +3
Query: 77 VIHMAARAADVREAHQHDVSLACRSPSPLRRAMCCSSLQXXXXXXXXXXXXXXXXGTLVX 136
V+H+A+RAA VR AH D +A RS SPLR +CC++ + G LV
Sbjct: 3 VVHVASRAAGVRGAH*CDARIARRSMSPLRPTVCCAAARPAKRAAASRCPPRPPRGALVI 182
Query: 137 XXXXXXXXXXXXXXXXXXXVLASKUEGHVR 166
V ASK EGHVR
Sbjct: 183 AA*RHHC*QGGAAGAHCTAVRASKREGHVR 272
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.328 0.130 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 496490398
Number of extensions: 7810794
Number of successful extensions: 87455
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 87428
Number of HSP's successfully gapped: 0
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 15 (7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.0 bits)
S2: 78 (34.7 bits)
Query= gi|154332242|ref|NC_009298.1|:subseq(147385,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 5
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
emb|AM494942.1| Leishmania braziliensis chromosome 5 228 3e-58
ref|XM_001561809.1| Leishmania braziliensis MHOM/BR/75/M2904 hyp... 167 1e-39
emb|AM502223.1| Leishmania infantum chromosome 5 141 7e-32
ref|XM_001462970.1| Leishmania infantum hypothetical protein, co... 135 4e-30
ref|XM_001687469.1| Leishmania major strain Friedlin hypothetica... 134 8e-30
ref|XM_818158.1| Trypanosoma brucei TREU927 hypothetical protein... 45 0.009
>emb|AM494942.1| Leishmania braziliensis chromosome 5
Length = 459355
Score = 228 bits (582), Expect = 3e-58, Method: Composition-based stats.
Identities = 130/166 (78%), Positives = 130/166 (78%)
Frame = +3
Query: 1 TGKRRRTVSRTRLCLPPRDKAAYPUCIAYXXXXXXXXXXFRPHTXXXXXXXXXXXXXXXX 60
TGKRRRTVSRTRLCLPPRDKAAYP CIAY FRPHT
Sbjct: 147387 TGKRRRTVSRTRLCLPPRDKAAYP*CIAYLLAFTLHLLLFRPHTRVVFGGVRVRVSSVSR 147566
Query: 61 XXXXXXXXXALCLPLMSSTWLHALRTYAKRTNTTSASLVARRHLFDELCAAHLCRLPNAQ 120
ALCLPLMSSTWLHALRTYAKRTNTTSASLVARRHLFDELCAAHLCRLPNAQ
Sbjct: 147567 SPPPPSLSVALCLPLMSSTWLHALRTYAKRTNTTSASLVARRHLFDELCAAHLCRLPNAQ 147746
Query: 121 LHPDALAVLREARWSLLREGTTADKAELLEHIVRQYSQASEKAMYV 166
LHPDALAVLREARWSLLREGTTADKAELLEHIVRQYSQASEKAMYV
Sbjct: 147747 LHPDALAVLREARWSLLREGTTADKAELLEHIVRQYSQASEKAMYV 147884
>ref|XM_001561809.1| Leishmania braziliensis MHOM/BR/75/M2904 hypothetical protein,
conserved (LbrM05_V2.0450) partial mRNA
Length = 2523
Score = 167 bits (422), Expect = 1e-39, Method: Composition-based stats.
Identities = 91/91 (100%), Positives = 91/91 (100%)
Frame = +1
Query: 76 MSSTWLHALRTYAKRTNTTSASLVARRHLFDELCAAHLCRLPNAQLHPDALAVLREARWS 135
MSSTWLHALRTYAKRTNTTSASLVARRHLFDELCAAHLCRLPNAQLHPDALAVLREARWS
Sbjct: 1 MSSTWLHALRTYAKRTNTTSASLVARRHLFDELCAAHLCRLPNAQLHPDALAVLREARWS 180
Query: 136 LLREGTTADKAELLEHIVRQYSQASEKAMYV 166
LLREGTTADKAELLEHIVRQYSQASEKAMYV
Sbjct: 181 LLREGTTADKAELLEHIVRQYSQASEKAMYV 273
>emb|AM502223.1| Leishmania infantum chromosome 5
Length = 455874
Score = 141 bits (355), Expect = 7e-32, Method: Composition-based stats.
Identities = 79/95 (83%), Positives = 83/95 (87%)
Frame = +1
Query: 71 LCLPLMSSTWLHALRTYAKRTNTTSASLVARRHLFDELCAAHLCRLPNAQLHPDALAVLR 130
+CL LMSSTWLHALR YA RTN T ASLVAR LFD+LCA L LP+AQLHPDAL VLR
Sbjct: 142321 VCLVLMSSTWLHALRAYATRTNATPASLVARCRLFDQLCAVQLRGLPSAQLHPDALPVLR 142500
Query: 131 EARWSLLREGTTADKAELLEHIVRQYSQASEKAMY 165
EARWSLLREGTTADKAELLEHIVRQY+QASEKAMY
Sbjct: 142501 EARWSLLREGTTADKAELLEHIVRQYAQASEKAMY 142605
>ref|XM_001462970.1| Leishmania infantum hypothetical protein, conserved (LinJ05.0440)
partial mRNA
Length = 2562
Score = 135 bits (341), Expect = 4e-30, Method: Composition-based stats.
Identities = 76/90 (84%), Positives = 79/90 (87%)
Frame = +1
Query: 76 MSSTWLHALRTYAKRTNTTSASLVARRHLFDELCAAHLCRLPNAQLHPDALAVLREARWS 135
MSSTWLHALR YA RTN T ASLVAR LFD+LCA L LP+AQLHPDAL VLREARWS
Sbjct: 1 MSSTWLHALRAYATRTNATPASLVARCRLFDQLCAVQLRGLPSAQLHPDALPVLREARWS 180
Query: 136 LLREGTTADKAELLEHIVRQYSQASEKAMY 165
LLREGTTADKAELLEHIVRQY+QASEKAMY
Sbjct: 181 LLREGTTADKAELLEHIVRQYAQASEKAMY 270
>ref|XM_001687469.1| Leishmania major strain Friedlin hypothetical protein, conserved
(LmjF05.0440) partial mRNA
Length = 2565
Score = 134 bits (338), Expect = 8e-30, Method: Composition-based stats.
Identities = 75/90 (83%), Positives = 78/90 (86%)
Frame = +1
Query: 76 MSSTWLHALRTYAKRTNTTSASLVARRHLFDELCAAHLCRLPNAQLHPDALAVLREARWS 135
MSSTWLHALR YA RTN T ASL AR LFD+LCA L LP+AQLHPDAL VLREARWS
Sbjct: 1 MSSTWLHALRAYAARTNATPASLAARCRLFDQLCAVQLRGLPSAQLHPDALPVLREARWS 180
Query: 136 LLREGTTADKAELLEHIVRQYSQASEKAMY 165
LLREGTTADKAELLEHIVRQY+QASEKAMY
Sbjct: 181 LLREGTTADKAELLEHIVRQYAQASEKAMY 270
>ref|XM_818158.1| Trypanosoma brucei TREU927 hypothetical protein (Tb10.406.0630)
partial mRNA
Length = 1782
Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 7/85 (8%)
Frame = +1
Query: 79 TWLHALRTY-------AKRTNTTSASLVARRHLFDELCAAHLCRLPNAQLHPDALAVLRE 131
+W+ ALR+Y +RT + VAR HL L +HP ++ VLR
Sbjct: 4 SWMSALRSYIASPPHIKQRTGSDIFRQVARAHLLGPL---------GHTIHPCSVLVLRR 156
Query: 132 ARWSLLREGTTADKAELLEHIVRQY 156
RW ++R GT+ KA+ LE I+ Y
Sbjct: 157 LRWEIMRYGTSGQKAQALETILACY 231
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.325 0.132 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 466383476
Number of extensions: 5894675
Number of successful extensions: 36926
Number of sequences better than 10: 1
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 36916
Number of HSP's successfully gapped: 1
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 15 (7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.0 bits)
S2: 78 (34.7 bits)
Query= gi|154332242|ref|NC_009298.1|:subseq(147385,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 5
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
emb|AM494942.1| Leishmania braziliensis chromosome 5 199 2e-49
ref|XM_001561809.1| Leishmania braziliensis MHOM/BR/75/M2904 hyp... 127 2e-27
emb|AM502223.1| Leishmania infantum chromosome 5 92 5e-17
ref|XM_001462970.1| Leishmania infantum hypothetical protein, co... 80 3e-13
ref|XM_001687469.1| Leishmania major strain Friedlin hypothetica... 77 2e-12
>emb|AM494942.1| Leishmania braziliensis chromosome 5
Length = 459355
Score = 199 bits (507), Expect = 2e-49, Method: Composition-based stats.
Identities = 138/166 (83%), Positives = 138/166 (83%)
Frame = +1
Query: 1 PVSGDAQCHGHACAFRQETKPPIPDVLHICXXXXXXXXXXXXXPGSSSVECVCVCXXXXX 60
PVSGDAQCHGHACAFRQETKPPIPDVLHIC PGSSSVECVCVC
Sbjct: 147388 PVSGDAQCHGHACAFRQETKPPIPDVLHICSLLLSTSFSFVLTPGSSSVECVCVCRASLA 147567
Query: 61 XXXXXXXXXXFVYLSCHPHGCTRCGRTRSAPTRRQPRLSLAVTSSTSYVLLISAGCRTRS 120
FVYLSCHPHGCTRCGRTRSAPTRRQPRLSLAVTSSTSYVLLISAGCRTRS
Sbjct: 147568 RPPPPPSPLPFVYLSCHPHGCTRCGRTRSAPTRRQPRLSLAVTSSTSYVLLISAGCRTRS 147747
Query: 121 CIPMLSPSSARHVGRCCAKAPPPTKQSCWSTSCGSTRKQVRRPCTW 166
CIPMLSPSSARHVGRCCAKAPPPTKQSCWSTSCGSTRKQVRRPCTW
Sbjct: 147748 CIPMLSPSSARHVGRCCAKAPPPTKQSCWSTSCGSTRKQVRRPCTW 147885
>ref|XM_001561809.1| Leishmania braziliensis MHOM/BR/75/M2904 hypothetical protein,
conserved (LbrM05_V2.0450) partial mRNA
Length = 2523
Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats.
Identities = 91/91 (100%), Positives = 91/91 (100%)
Frame = +2
Query: 76 CHPHGCTRCGRTRSAPTRRQPRLSLAVTSSTSYVLLISAGCRTRSCIPMLSPSSARHVGR 135
CHPHGCTRCGRTRSAPTRRQPRLSLAVTSSTSYVLLISAGCRTRSCIPMLSPSSARHVGR
Sbjct: 2 CHPHGCTRCGRTRSAPTRRQPRLSLAVTSSTSYVLLISAGCRTRSCIPMLSPSSARHVGR 181
Query: 136 CCAKAPPPTKQSCWSTSCGSTRKQVRRPCTW 166
CCAKAPPPTKQSCWSTSCGSTRKQVRRPCTW
Sbjct: 182 CCAKAPPPTKQSCWSTSCGSTRKQVRRPCTW 274
>emb|AM502223.1| Leishmania infantum chromosome 5
Length = 455874
Score = 92.0 bits (227), Expect = 5e-17, Method: Composition-based stats.
Identities = 60/90 (66%), Positives = 64/90 (71%)
Frame = +2
Query: 76 CHPHGCTRCGRTRSAPTRRQPRLSLAVTSSTSYVLLISAGCRTRSCIPMLSPSSARHVGR 135
C P G TRCGRTR A RR R SL V SST+ VL AGC+ RSCIPM SPSSAR VG
Sbjct: 142337 CRPRGFTRCGRTRRALMRRPHRSSLDVASSTNCVLCSCAGCQARSCIPMPSPSSARRVGH 142516
Query: 136 CCAKAPPPTKQSCWSTSCGSTRKQVRRPCT 165
CC KAP T++SCWST GS RKQ RRPCT
Sbjct: 142517 CCVKAPLLTRRSCWSTLYGSMRKQARRPCT 142606
>ref|XM_001462970.1| Leishmania infantum hypothetical protein, conserved (LinJ05.0440)
partial mRNA
Length = 2562
Score = 79.7 bits (195), Expect = 3e-13, Method: Composition-based stats.
Identities = 60/90 (66%), Positives = 64/90 (71%)
Frame = +2
Query: 76 CHPHGCTRCGRTRSAPTRRQPRLSLAVTSSTSYVLLISAGCRTRSCIPMLSPSSARHVGR 135
C P G TRCGRTR A RR R SL V SST+ VL AGC+ RSCIPM SPSSAR VG
Sbjct: 2 CRPRGFTRCGRTRRALMRRPHRSSLDVASSTNCVLCSCAGCQARSCIPMPSPSSARRVGH 181
Query: 136 CCAKAPPPTKQSCWSTSCGSTRKQVRRPCT 165
CC KAP T++SCWST GS RKQ RRPCT
Sbjct: 182 CCVKAPLLTRRSCWSTLYGSMRKQARRPCT 271
>ref|XM_001687469.1| Leishmania major strain Friedlin hypothetical protein, conserved
(LmjF05.0440) partial mRNA
Length = 2565
Score = 77.0 bits (188), Expect = 2e-12, Method: Composition-based stats.
Identities = 59/90 (65%), Positives = 63/90 (70%)
Frame = +2
Query: 76 CHPHGCTRCGRTRSAPTRRQPRLSLAVTSSTSYVLLISAGCRTRSCIPMLSPSSARHVGR 135
C P G TRCGRTR A RR R L V SST+ VL A C+ RSCIPM SPSSAR VG
Sbjct: 2 CRPRGFTRCGRTRRALMRRPHRSPLDVASSTNCVLCSCAACQARSCIPMPSPSSARRVGH 181
Query: 136 CCAKAPPPTKQSCWSTSCGSTRKQVRRPCT 165
CC KAP T++SCWST GSTRKQ RRPCT
Sbjct: 182 CCVKAPLLTRRSCWSTLYGSTRKQARRPCT 271
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.324 0.133 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 804397033
Number of extensions: 15894169
Number of successful extensions: 197639
Number of sequences better than 10: 113
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 196548
Number of HSP's successfully gapped: 170
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 15 (7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.0 bits)
S2: 78 (34.7 bits)
Query= gi|154332242|ref|NC_009298.1|:subseq(167598,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 5:[revcomp]
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
emb|AM494942.1| Leishmania braziliensis chromosome 5 185 5e-45
emb|AM494953.1| Leishmania braziliensis chromosome 16 39 0.47
emb|AM502232.1| Leishmania infantum chromosome 14 35 6.5
>emb|AM494942.1| Leishmania braziliensis chromosome 5
Length = 459355
Score = 185 bits (469), Expect = 5e-45, Method: Composition-based stats.
Identities = 109/166 (65%), Positives = 109/166 (65%)
Frame = -1
Query: 1 FLDLAAEXKRETREGERHVCXXXXXXXXXXXXXXXXXXXXXXXXXXXTSRCLPLCLCVRS 60
FLDLAAE KRETREGERHVC TSRCLPLCLCVRS
Sbjct: 291757 FLDLAAE*KRETREGERHVCRVAKQRQRRVGGGRGGGKTRGRGVCGQTSRCLPLCLCVRS 291578
Query: 61 AHVRLLAUQRRMMVIHRADDQSCTSLFWFSLEAFTRTHALVSIHVYLAIYTSPGAPQIHR 120
AHVRLLA QRRMMVIHRADDQSCTSLFWFSLEAFTRTHALVSIHVYLAIYTSPGAPQIHR
Sbjct: 291577 AHVRLLA*QRRMMVIHRADDQSCTSLFWFSLEAFTRTHALVSIHVYLAIYTSPGAPQIHR 291398
Query: 121 HVCVHUUSLHXXXXXXXXXXXXXXXXXXXXXXXXXXLSACGTRNEW 166
HVCVH SLH LSACGTRNEW
Sbjct: 291397 HVCVH**SLHVAAYVRRSRVALRARRHTHTHTHTHTLSACGTRNEW 291260
>emb|AM494953.1| Leishmania braziliensis chromosome 16
Length = 696353
Score = 39.3 bits (90), Expect = 0.47, Method: Composition-based stats.
Identities = 19/20 (95%), Positives = 19/20 (95%)
Frame = -2
Query: 1 FLDLAAEXKRETREGERHVC 20
FLDLAAE KRETREGERHVC
Sbjct: 375058 FLDLAAE*KRETREGERHVC 374999
>emb|AM502232.1| Leishmania infantum chromosome 14
Length = 646237
Score = 35.4 bits (80), Expect = 6.5, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 25/38 (65%)
Frame = +3
Query: 51 CLPLCLCVRSAHVRLLAUQRRMMVIHRADDQSCTSLFW 88
CL +C+CVR++H+RL + +I R D+SC+ FW
Sbjct: 450474 CLCVCVCVRASHMRLHSLPLSFYIICRILDRSCSCSFW 450587
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.335 0.138 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 436808879
Number of extensions: 5850966
Number of successful extensions: 59255
Number of sequences better than 10: 1
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 59056
Number of HSP's successfully gapped: 1
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 15 (7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (19.6 bits)
S2: 78 (34.7 bits)
Query= gi|154332242|ref|NC_009298.1|:subseq(167598,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 5:[revcomp]
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
emb|AM494942.1| Leishmania braziliensis chromosome 5 211 6e-53
emb|AM494953.1| Leishmania braziliensis chromosome 16 36 3.6
>emb|AM494942.1| Leishmania braziliensis chromosome 5
Length = 459355
Score = 211 bits (537), Expect = 6e-53, Method: Composition-based stats.
Identities = 116/166 (69%), Positives = 116/166 (69%)
Frame = -2
Query: 1 FLIXLLNXXXXXXXESDTSVEWQSNANAALXXXXXXXXXXXXXFVGRHLDACPSACVSAV 60
FLI LLN ESDTSVEWQSNANAAL FVGRHLDACPSACVSAV
Sbjct: 291756 FLI*LLNRRGRRGRESDTSVEWQSNANAALGEEGGGGRRGGEEFVGRHLDACPSACVSAV 291577
Query: 61 LMCACLPDSDVUWLFIALMIRAAPPSFGFLSKPLHAXXXXXXXXXXXXXXXXXALLRYTD 120
LMCACLPDSDV WLFIALMIRAAPPSFGFLSKPLHA ALLRYTD
Sbjct: 291576 LMCACLPDSDV*WLFIALMIRAAPPSFGFLSKPLHARTRSSVSTST*RYTQVRALLRYTD 291397
Query: 121 TSAYIDDHYMLLRTXGVHVLPFVRADXXXXXXXXXXSLRVVQETNG 166
TSAYIDDHYMLLRT GVHVLPFVRAD SLRVVQETNG
Sbjct: 291396 TSAYIDDHYMLLRT*GVHVLPFVRADTHTHTHTHTHSLRVVQETNG 291259
>emb|AM494953.1| Leishmania braziliensis chromosome 16
Length = 696353
Score = 36.2 bits (82), Expect = 3.6, Method: Composition-based stats.
Identities = 18/26 (69%), Positives = 18/26 (69%)
Frame = -3
Query: 1 FLIXLLNXXXXXXXESDTSVEWQSNA 26
FLI LLN ESDTSVEWQSNA
Sbjct: 375057 FLI*LLNRRGRRGRESDTSVEWQSNA 374980
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.336 0.143 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 393087926
Number of extensions: 4778018
Number of successful extensions: 52872
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 52678
Number of HSP's successfully gapped: 0
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 15 (7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (19.6 bits)
S2: 78 (34.7 bits)
Query= gi|154332242|ref|NC_009298.1|:subseq(167598,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 5:[revcomp]
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
emb|AM494942.1| Leishmania braziliensis chromosome 5 262 3e-68
emb|AM494953.1| Leishmania braziliensis chromosome 16 41 0.14
ref|XM_001563654.1| Leishmania braziliensis MHOM/BR/75/M2904 hyp... 40 0.31
ref|XM_002289281.1| Thalassiosira pseudonana CCMP1335 predicted ... 38 1.3
dbj|AP009152.1| Kocuria rhizophila DC2201 DNA, complete genome 37 2.5
ref|XM_647083.1| Entamoeba histolytica HM-1:IMSS nuclear LIM int... 36 3.3
>emb|AM494942.1| Leishmania braziliensis chromosome 5
Length = 459355
Score = 262 bits (669), Expect = 3e-68, Method: Composition-based stats.
Identities = 149/164 (90%), Positives = 149/164 (90%)
Frame = -3
Query: 3 SSCUIEEGDEGGRATRLXSGKATPTPRWGRKGGGEDEGARSLWADISMPAPLPVCPQCSC 62
SSC IEEGDEGGRATRL SGKATPTPRWGRKGGGEDEGARSLWADISMPAPLPVCPQCSC
Sbjct: 291749 SSC*IEEGDEGGRATRL*SGKATPTPRWGRKGGGEDEGARSLWADISMPAPLPVCPQCSC 291570
Query: 63 ALACLTATYDGYSSRUUSELHLPLLVFSRSLYTHARARQYPRLLSDIHKSGRSSDTQTRL 122
ALACLTATYDGYSSR SELHLPLLVFSRSLYTHARARQYPRLLSDIHKSGRSSDTQTRL
Sbjct: 291569 ALACLTATYDGYSSR**SELHLPLLVFSRSLYTHARARQYPRLLSDIHKSGRSSDTQTRL 291390
Query: 123 RTLMIITCCCVRKAFTCCPSCAQXXXXXXXXXXXLCVWYKKRMG 166
RTLMIITCCCVRKAFTCCPSCAQ LCVWYKKRMG
Sbjct: 291389 RTLMIITCCCVRKAFTCCPSCAQTHTHTHTHTHTLCVWYKKRMG 291258
>emb|AM494953.1| Leishmania braziliensis chromosome 16
Length = 696353
Score = 40.8 bits (94), Expect = 0.14, Method: Composition-based stats.
Identities = 30/57 (52%), Positives = 33/57 (57%)
Frame = -1
Query: 3 SSCUIEEGDEGGRATRLXSGKATPTPRWGRKGGGEDEGARSLWADISMPAPLPVCPQ 59
SSC IEEGDEGGRATRL SGKATP R+ GG R + A P+CP
Sbjct: 375050 SSC*IEEGDEGGRATRL*SGKATP-----RRVGG*PAAPRRRSSRPGHAAQCPICPH 374895
>ref|XM_001563654.1| Leishmania braziliensis MHOM/BR/75/M2904 hypothetical protein,
conserved (LbrM16_V2.1020) partial mRNA
Length = 2712
Score = 39.7 bits (91), Expect = 0.31, Method: Composition-based stats.
Identities = 29/56 (51%), Positives = 32/56 (57%)
Frame = -3
Query: 4 SCUIEEGDEGGRATRLXSGKATPTPRWGRKGGGEDEGARSLWADISMPAPLPVCPQ 59
SC IEEGDEGGRATRL SGKATP R+ GG R + A P+CP
Sbjct: 2710 SC*IEEGDEGGRATRL*SGKATP-----RRVGG*PAAPRRRSSRPGHAAQCPICPH 2558
>ref|XM_002289281.1| Thalassiosira pseudonana CCMP1335 predicted protein, mRNA
Length = 1209
Score = 37.7 bits (86), Expect = 1.3, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +1
Query: 25 TPTPRWGRKGGGEDEGARSLWADISMPAPLPVCPQCS 61
+ TP G+KGGG D+ A+ D + P+PLP C+
Sbjct: 70 SSTPDKGKKGGGNDDNAQDFGTDTTSPSPLPATNVCT 180
>dbj|AP009152.1| Kocuria rhizophila DC2201 DNA, complete genome
Length = 2697540
Score = 36.6 bits (83), Expect = 2.5, Method: Composition-based stats.
Identities = 13/23 (56%), Positives = 18/23 (78%)
Frame = +2
Query: 35 GGEDEGARSLWADISMPAPLPVC 57
GGED+G+R+ WA + PAP P+C
Sbjct: 1177568 GGEDQGSRTTWAPYTRPAPKPIC 1177636
>ref|XM_647083.1| Entamoeba histolytica HM-1:IMSS nuclear LIM interactor-interacting
factor 3, mRNA
Length = 681
Score = 36.2 bits (82), Expect = 3.3, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 28/54 (51%)
Frame = +1
Query: 64 LACLTATYDGYSSRUUSELHLPLLVFSRSLYTHARARQYPRLLSDIHKSGRSSD 117
L TA+ +GY+++ + L +F LY H ++ +L D+HK GR D
Sbjct: 346 LILFTASTEGYATQIINNLERDGQIFDYKLYCHNCKEKFGQLFKDVHKLGRDLD 507
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.326 0.136 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 704221313
Number of extensions: 14294403
Number of successful extensions: 159253
Number of sequences better than 10: 4
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 157073
Number of HSP's successfully gapped: 4
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 15 (7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.0 bits)
S2: 78 (34.7 bits)
Query= gi|154332242|ref|NC_009298.1|:subseq(200968,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 5:[revcomp]
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
emb|AM494942.1| Leishmania braziliensis chromosome 5 143 2e-32
>emb|AM494942.1| Leishmania braziliensis chromosome 5
Length = 459355
Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats.
Identities = 92/166 (55%), Positives = 92/166 (55%)
Frame = -2
Query: 1 AAAAFTLSSSPASYVNSVRVRVRLSGPLMSIQRYUERCTAPXXXXXXXXXXXXXXXXXXS 60
AAAAFTLSSSPASYVNSVRVRVRLSGPLMSIQRY ERCTAP S
Sbjct: 258387 AAAAFTLSSSPASYVNSVRVRVRLSGPLMSIQRY*ERCTAP*REEREREGGREGGGEEES 258208
Query: 61 VTSEGIKGXXXXXXXXXXXXXXXXXXFHPQLPHPARPYKVETHRXXXXXXXXXXXXXXXH 120
VTSEGIKG FHPQLPHPARPYKVETHR H
Sbjct: 258207 VTSEGIKGEVERRSCEEERCNLLERVFHPQLPHPARPYKVETHRSFPYPNPLPLSLSLSH 258028
Query: 121 FCKTYXXXXXXXXXXXXXXXXXXXXSFWCLSLRUVHUFKALSENTT 166
FCKTY SFWCLSLR VH FKALSENTT
Sbjct: 258027 FCKTYRALLATPPPPALPARVACRPSFWCLSLR*VH*FKALSENTT 257890
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.322 0.130 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 332636916
Number of extensions: 2554701
Number of successful extensions: 12273
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 12265
Number of HSP's successfully gapped: 0
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 16 (7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 78 (34.7 bits)
Query= gi|154332242|ref|NC_009298.1|:subseq(200968,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 5:[revcomp]
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
emb|AM494942.1| Leishmania braziliensis chromosome 5 205 4e-51
>emb|AM494942.1| Leishmania braziliensis chromosome 5
Length = 459355
Score = 205 bits (521), Expect = 4e-51, Method: Composition-based stats.
Identities = 123/158 (77%), Positives = 123/158 (77%)
Frame = -3
Query: 9 RHPPLTXTLCACVCVFRALUUAYRGTESVVLHHDVXXXXXXXXXXXXXXXXALQAKGXRE 68
RHPPLT TLCACVCVFRAL AYRGTESVVLHHDV ALQAKG RE
Sbjct: 258362 RHPPLT*TLCACVCVFRAL**AYRGTESVVLHHDVKREREREGGREEERKRALQAKG*RE 258183
Query: 69 KXRGGAVRKRGAIYXSEFFIHSYLTLHGRIRXRRIAAFXXXXXXXXXXXCLIFAKHIVRC 128
K RGGAVRKRGAIY SEFFIHSYLTLHGRIR RRIAAF CLIFAKHIVRC
Sbjct: 258182 K*RGGAVRKRGAIY*SEFFIHSYLTLHGRIR*RRIAAFLTPTPSLSLSLCLIFAKHIVRC 258003
Query: 129 WRHPLLPPFPPGLRVVPRSGVSLYAEFIDLRHXAKTQQ 166
WRHPLLPPFPPGLRVVPRSGVSLYAEFIDLRH AKTQQ
Sbjct: 258002 WRHPLLPPFPPGLRVVPRSGVSLYAEFIDLRH*AKTQQ 257889
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.356 0.160 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 445356488
Number of extensions: 6166547
Number of successful extensions: 405324
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 400141
Number of HSP's successfully gapped: 0
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 14 (7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (18.9 bits)
S2: 78 (34.7 bits)
Query= gi|154332242|ref|NC_009298.1|:subseq(200968,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 5:[revcomp]
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
emb|AM494942.1| Leishmania braziliensis chromosome 5 154 1e-35
>emb|AM494942.1| Leishmania braziliensis chromosome 5
Length = 459355
Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats.
Identities = 92/166 (55%), Positives = 92/166 (55%)
Frame = -1
Query: 1 CCCFHSIFVTRLLRKLCARACASFGPFDEHTEVLRALYCTMTUXXXXXXXXXXXXXXXXX 60
CCCFHSIFVTRLLRKLCARACASFGPFDEHTEVLRALYCTMT
Sbjct: 258385 CCCFHSIFVTRLLRKLCARACASFGPFDEHTEVLRALYCTMT*RERERGREGGRRRGRER 258206
Query: 61 XXXXXXXXXXXAELUGREVQXXXXXXXXXXXXPCTAVXGRDAXXXXXXXXXXXXXXXVSF 120
AEL GREVQ PCTAV GRDA VSF
Sbjct: 258205 YKRRDKGRSREAEL*GREVQFTRASFSSTATSPCTAV*GRDASQLSLPQPPPSLSLSVSF 258026
Query: 121 LQNISCVAGDTPSSRPSRQGCXXXXXXXXXXXXXXXIXGIKRKHNR 166
LQNISCVAGDTPSSRPSRQGC I GIKRKHNR
Sbjct: 258025 LQNISCVAGDTPSSRPSRQGCVSSLVLVSLFTLSSLI*GIKRKHNR 257888
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.340 0.145 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 371809975
Number of extensions: 3951715
Number of successful extensions: 28085
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 28081
Number of HSP's successfully gapped: 0
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 15 (7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (19.6 bits)
S2: 78 (34.7 bits)
Query= gi|154332242|ref|NC_009298.1|:subseq(226049,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 5:[revcomp]
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
ref|XM_001561832.1| Leishmania braziliensis MHOM/BR/75/M2904 hyp... 201 6e-50
emb|AM494942.1| Leishmania braziliensis chromosome 5 201 6e-50
emb|AM502223.1| Leishmania infantum chromosome 5 145 6e-33
ref|XM_001687494.1| Leishmania major strain Friedlin hypothetica... 139 3e-31
>ref|XM_001561832.1| Leishmania braziliensis MHOM/BR/75/M2904 hypothetical protein,
conserved (LbrM05_V2.0680) partial mRNA
Length = 8619
Score = 201 bits (511), Expect = 6e-50, Method: Composition-based stats.
Identities = 140/166 (84%), Positives = 140/166 (84%)
Frame = -2
Query: 1 IRAAEPKDDPIPTPLVRFGXWGSYVPGPGASLLPLTTFTGRSARPKAAEGPUMPLLSPPW 60
IRAAEPKDDPIPTPLVRFG WGSYVPGPGASLLPLTTFTGRSARPKAAEGP MPLLSPPW
Sbjct: 7661 IRAAEPKDDPIPTPLVRFG*WGSYVPGPGASLLPLTTFTGRSARPKAAEGP*MPLLSPPW 7482
Query: 61 XCDVGXTGLYVPGPTSGEASTSPLRRAGRGPRGIVMLGPRPPICMESMALPTSYDXXXXX 120
CDVG TGLYVPGPTSGEASTSPLRRAGRGPRGIVMLGPRPPICMESMALPTSYD
Sbjct: 7481 *CDVG*TGLYVPGPTSGEASTSPLRRAGRGPRGIVMLGPRPPICMESMALPTSYDPGPGV 7302
Query: 121 XXXXXXXXXXXXXXXXEPPSCGPMTTSRGACVKLTNWUVACSGGRS 166
EPPSCGPMTTSRGACVKLTNW VACSGGRS
Sbjct: 7301 PPPT*PPRTSPLCRLPEPPSCGPMTTSRGACVKLTNW*VACSGGRS 7164
>emb|AM494942.1| Leishmania braziliensis chromosome 5
Length = 459355
Score = 201 bits (511), Expect = 6e-50, Method: Composition-based stats.
Identities = 140/166 (84%), Positives = 140/166 (84%)
Frame = -3
Query: 1 IRAAEPKDDPIPTPLVRFGXWGSYVPGPGASLLPLTTFTGRSARPKAAEGPUMPLLSPPW 60
IRAAEPKDDPIPTPLVRFG WGSYVPGPGASLLPLTTFTGRSARPKAAEGP MPLLSPPW
Sbjct: 233306 IRAAEPKDDPIPTPLVRFG*WGSYVPGPGASLLPLTTFTGRSARPKAAEGP*MPLLSPPW 233127
Query: 61 XCDVGXTGLYVPGPTSGEASTSPLRRAGRGPRGIVMLGPRPPICMESMALPTSYDXXXXX 120
CDVG TGLYVPGPTSGEASTSPLRRAGRGPRGIVMLGPRPPICMESMALPTSYD
Sbjct: 233126 *CDVG*TGLYVPGPTSGEASTSPLRRAGRGPRGIVMLGPRPPICMESMALPTSYDPGPGV 232947
Query: 121 XXXXXXXXXXXXXXXXEPPSCGPMTTSRGACVKLTNWUVACSGGRS 166
EPPSCGPMTTSRGACVKLTNW VACSGGRS
Sbjct: 232946 PPPT*PPRTSPLCRLPEPPSCGPMTTSRGACVKLTNW*VACSGGRS 232809
>emb|AM502223.1| Leishmania infantum chromosome 5
Length = 455874
Score = 145 bits (365), Expect = 6e-33, Method: Composition-based stats.
Identities = 105/155 (67%), Positives = 108/155 (69%)
Frame = -1
Query: 1 IRAAEPKDDPIPTPLVRFGXWGSYVPGPGASLLPLTTFTGRSARPKAAEGPUMPLLSPPW 60
IR AEPKD PIP PL R G WGSYVPGPGASL FT RSARPKAAEGP + L PPW
Sbjct: 244917 IRTAEPKDGPIPAPLARLGRWGSYVPGPGASLPLWMLFTARSARPKAAEGPLVLLPPPPW 244738
Query: 61 XCDVGXTGLYVPGPTSGEASTSPLRRAGRGPRGIVMLGPRPPICMESMALPTSYDXXXXX 120
CDVG TGLYVPGPTSGEASTSPLR GRGPRGIV LGPRPPIC++SMALPTSYD
Sbjct: 244737 WCDVGSTGLYVPGPTSGEASTSPLRSTGRGPRGIVKLGPRPPICVQSMALPTSYDPGPGV 244558
Query: 121 XXXXXXXXXXXXXXXXEPPSCGPMTTSRGACVKLT 155
PSC P T SRGACVKLT
Sbjct: 244557 PPPTRPPRMSPLCRSSVLPSCEPTTISRGACVKLT 244453
>ref|XM_001687494.1| Leishmania major strain Friedlin hypothetical protein, conserved
(LmjF05.0690) partial mRNA
Length = 8064
Score = 139 bits (349), Expect = 3e-31, Method: Composition-based stats.
Identities = 109/166 (65%), Positives = 113/166 (68%)
Frame = -2
Query: 1 IRAAEPKDDPIPTPLVRFGXWGSYVPGPGASLLPLTTFTGRSARPKAAEGPUMPLLSPPW 60
IR AEPKD PIP PL R G WGS VPGPGASL FT RSARPKAAEGP +PL PPW
Sbjct: 7268 IRTAEPKDGPIPAPLARRGRWGS*VPGPGASLPRGMVFTTRSARPKAAEGPLVPLPPPPW 7089
Query: 61 XCDVGXTGLYVPGPTSGEASTSPLRRAGRGPRGIVMLGPRPPICMESMALPTSYDXXXXX 120
CD G TGLYVPGPTSGEASTSPLR GR PRGIV LGPRPPIC++SMALPTSYD
Sbjct: 7088 WCDAGSTGLYVPGPTSGEASTSPLRSTGRSPRGIVKLGPRPPICVQSMALPTSYDPGPGV 6909
Query: 121 XXXXXXXXXXXXXXXXEPPSCGPMTTSRGACVKLTNWUVACSGGRS 166
PSC P TTSRGACVKLT W +A GRS
Sbjct: 6908 PPPTQPPRMSPLCRASALPSCAPTTTSRGACVKLTGWRMAGGAGRS 6771
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.327 0.145 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 635841404
Number of extensions: 12198014
Number of successful extensions: 110451
Number of sequences better than 10: 8
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 110205
Number of HSP's successfully gapped: 11
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 15 (7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.0 bits)
S2: 78 (34.7 bits)
Query= gi|154332242|ref|NC_009298.1|:subseq(226049,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 5:[revcomp]
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
ref|XM_001561832.1| Leishmania braziliensis MHOM/BR/75/M2904 hyp... 209 3e-52
emb|AM494942.1| Leishmania braziliensis chromosome 5 209 3e-52
ref|XM_001687494.1| Leishmania major strain Friedlin hypothetica... 92 8e-17
emb|AM502223.1| Leishmania infantum chromosome 5 79 6e-13
>ref|XM_001561832.1| Leishmania braziliensis MHOM/BR/75/M2904 hypothetical protein,
conserved (LbrM05_V2.0680) partial mRNA
Length = 8619
Score = 209 bits (531), Expect = 3e-52, Method: Composition-based stats.
Identities = 147/166 (88%), Positives = 147/166 (88%)
Frame = -3
Query: 1 SVPQSRRTTQSQLRWUDLGSGGHTCPGQARHCCPUQRSQDALPGRRLRKDPECRCCRRRG 60
SVPQSRRTTQSQLRW DLGSGGHTCPGQARHCCP QRSQDALPGRRLRKDPECRCCRRRG
Sbjct: 7660 SVPQSRRTTQSQLRW*DLGSGGHTCPGQARHCCP*QRSQDALPGRRLRKDPECRCCRRRG 7481
Query: 61 SATSGRQGCTCLVPRVGRRRRLHCAELAAGHAESUCSVLVHPSVWSRWHSRRRTTLVREY 120
SATSGRQGCTCLVPRVGRRRRLHCAELAAGHAES CSVLVHPSVWSRWHSRRRTTLVREY
Sbjct: 7480 SATSGRQGCTCLVPRVGRRRRLHCAELAAGHAES*CSVLVHPSVWSRWHSRRRTTLVREY 7301
Query: 121 HRRHNRHAHXXXXXXXXXXXXXXXPPPVGLAXSSQIGEWRAAVGGR 166
HRRHNRHAH PPPVGLA SSQIGEWRAAVGGR
Sbjct: 7300 HRRHNRHAHLRCAGCRSRRRAGL*PPPVGLA*SSQIGEWRAAVGGR 7163
>emb|AM494942.1| Leishmania braziliensis chromosome 5
Length = 459355
Score = 209 bits (531), Expect = 3e-52, Method: Composition-based stats.
Identities = 147/166 (88%), Positives = 147/166 (88%)
Frame = -1
Query: 1 SVPQSRRTTQSQLRWUDLGSGGHTCPGQARHCCPUQRSQDALPGRRLRKDPECRCCRRRG 60
SVPQSRRTTQSQLRW DLGSGGHTCPGQARHCCP QRSQDALPGRRLRKDPECRCCRRRG
Sbjct: 233305 SVPQSRRTTQSQLRW*DLGSGGHTCPGQARHCCP*QRSQDALPGRRLRKDPECRCCRRRG 233126
Query: 61 SATSGRQGCTCLVPRVGRRRRLHCAELAAGHAESUCSVLVHPSVWSRWHSRRRTTLVREY 120
SATSGRQGCTCLVPRVGRRRRLHCAELAAGHAES CSVLVHPSVWSRWHSRRRTTLVREY
Sbjct: 233125 SATSGRQGCTCLVPRVGRRRRLHCAELAAGHAES*CSVLVHPSVWSRWHSRRRTTLVREY 232946
Query: 121 HRRHNRHAHXXXXXXXXXXXXXXXPPPVGLAXSSQIGEWRAAVGGR 166
HRRHNRHAH PPPVGLA SSQIGEWRAAVGGR
Sbjct: 232945 HRRHNRHAHLRCAGCRSRRRAGL*PPPVGLA*SSQIGEWRAAVGGR 232808
>ref|XM_001687494.1| Leishmania major strain Friedlin hypothetical protein, conserved
(LmjF05.0690) partial mRNA
Length = 8064
Score = 91.7 bits (226), Expect = 8e-17, Method: Composition-based stats.
Identities = 92/159 (57%), Positives = 100/159 (62%)
Frame = -3
Query: 1 SVPQSRRTTQSQLRWUDLGSGGHTCPGQARHCCPUQRSQDALPGRRLRKDPECRCCRRRG 60
S P+SRRT +S+LRW D G GGH C G+ RHC SQ ALP RRLRK CRC RRRG
Sbjct: 7267 SAPRSRRTARSRLRWQDEGGGGHRCLGRVRHCRAGWCSQHALPDRRLRKGRWCRCRRRRG 7088
Query: 61 SATSGRQGCTCLVPRVGRRRRLHCAELAAGHAESUCSVLVHPSVWSRWHSRRRTTLVREY 120
AT GRQGCTCL PR G+RRR HCA AA HAES S V P V SRWHS+RRTTL R
Sbjct: 7087 GATPGRQGCTCLAPRAGKRRRPHCAAPAAAHAES*SSGPVLPYVCSRWHSQRRTTLARGC 6908
Query: 121 HRRHNRHAHXXXXXXXXXXXXXXXPPPVGLAXSSQIGEW 159
RH+ HA PPPV LA SS +GEW
Sbjct: 6907 RHRHSHHACLRSAGRRRCLRARPRPPPVALA*SSPVGEW 6791
>emb|AM502223.1| Leishmania infantum chromosome 5
Length = 455874
Score = 78.6 bits (192), Expect = 6e-13, Method: Composition-based stats.
Identities = 82/147 (55%), Positives = 87/147 (59%)
Frame = -2
Query: 8 TTQSQLRWUDLGSGGHTCPGQARHCCPUQRSQDALPGRRLRKDPECRCCRRRGSATSGRQ 67
T +S+LRW G GGHTC G+ RHC S+ ALP RRLRK C C RRRG ATSGRQ
Sbjct: 244895 TARSRLRWRG*GGGGHTCLGRVRHCRSGCCSRHALPDRRLRKGRWCCCHRRRGGATSGRQ 244716
Query: 68 GCTCLVPRVGRRRRLHCAELAAGHAESUCSVLVHPSVWSRWHSRRRTTLVREYHRRHNRH 127
GCTCL PR GRRRR HCA AA HAES S V P V SRWHS+RRTTL R R H
Sbjct: 244715 GCTCLAPRAGRRRRPHCAAPAAAHAES*SSGPVLPYVCSRWHSQRRTTLARGCRHRQGHH 244536
Query: 128 AHXXXXXXXXXXXXXXXPPPVGLAXSS 154
A P PV LA SS
Sbjct: 244535 ACLRCAGRRCCLRASPRPSPVALA*SS 244455
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.327 0.137 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 765842166
Number of extensions: 16102342
Number of successful extensions: 193409
Number of sequences better than 10: 62
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 192423
Number of HSP's successfully gapped: 94
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 15 (7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.0 bits)
S2: 78 (34.7 bits)
Query= gi|154332242|ref|NC_009298.1|:subseq(226049,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 5:[revcomp]
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
ref|XM_001561832.1| Leishmania braziliensis MHOM/BR/75/M2904 hyp... 216 2e-54
emb|AM494942.1| Leishmania braziliensis chromosome 5 216 2e-54
ref|XM_001687494.1| Leishmania major strain Friedlin hypothetica... 124 1e-26
emb|AM502223.1| Leishmania infantum chromosome 5 115 3e-24
>ref|XM_001561832.1| Leishmania braziliensis MHOM/BR/75/M2904 hypothetical protein,
conserved (LbrM05_V2.0680) partial mRNA
Length = 8619
Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats.
Identities = 120/166 (72%), Positives = 120/166 (72%)
Frame = -1
Query: 1 PCRRAEGRPNPNSVGEIWXXXXXXXXXXXXXXXLDNVHRTLCQAEGCGRTLNXXXXXXXX 60
PCRRAEGRPNPNSVGEIW LDNVHRTLCQAEGCGRTLN
Sbjct: 7659 PCRRAEGRPNPNSVGEIWVVGVIRARARRVTAALDNVHRTLCQAEGCGRTLNAAAVAAVV 7480
Query: 61 XXXXXXXXXXXWSHEWGGVDVSTAQSWPRATRNRDARSSSTHLYGVDGTPDVVRPWSGST 120
WSHEWGGVDVSTAQSWPRATRNRDARSSSTHLYGVDGTPDVVRPWSGST
Sbjct: 7479 VRRRVDRVVRAWSHEWGGVDVSTAQSWPRATRNRDARSSSTHLYGVDGTPDVVRPWSGST 7300
Query: 121 TADITATHISXXXXXXXXXXXXYDHLPWGLRKAHKLVSGVQRWEVV 166
TADITATHIS YDHLPWGLRKAHKLVSGVQRWEVV
Sbjct: 7299 TADITATHISAVQVAGAAVVRAYDHLPWGLRKAHKLVSGVQRWEVV 7162
>emb|AM494942.1| Leishmania braziliensis chromosome 5
Length = 459355
Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats.
Identities = 120/166 (72%), Positives = 120/166 (72%)
Frame = -2
Query: 1 PCRRAEGRPNPNSVGEIWXXXXXXXXXXXXXXXLDNVHRTLCQAEGCGRTLNXXXXXXXX 60
PCRRAEGRPNPNSVGEIW LDNVHRTLCQAEGCGRTLN
Sbjct: 233304 PCRRAEGRPNPNSVGEIWVVGVIRARARRVTAALDNVHRTLCQAEGCGRTLNAAAVAAVV 233125
Query: 61 XXXXXXXXXXXWSHEWGGVDVSTAQSWPRATRNRDARSSSTHLYGVDGTPDVVRPWSGST 120
WSHEWGGVDVSTAQSWPRATRNRDARSSSTHLYGVDGTPDVVRPWSGST
Sbjct: 233124 VRRRVDRVVRAWSHEWGGVDVSTAQSWPRATRNRDARSSSTHLYGVDGTPDVVRPWSGST 232945
Query: 121 TADITATHISXXXXXXXXXXXXYDHLPWGLRKAHKLVSGVQRWEVV 166
TADITATHIS YDHLPWGLRKAHKLVSGVQRWEVV
Sbjct: 232944 TADITATHISAVQVAGAAVVRAYDHLPWGLRKAHKLVSGVQRWEVV 232807
>ref|XM_001687494.1| Leishmania major strain Friedlin hypothetical protein, conserved
(LmjF05.0690) partial mRNA
Length = 8064
Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats.
Identities = 73/166 (43%), Positives = 87/166 (52%)
Frame = -1
Query: 1 PCRRAEGRPNPNSVGEIWXXXXXXXXXXXXXXXLDNVHRTLCQAEGCGRTLNXXXXXXXX 60
P R AEGRP+P SVG+ D VH TLCQ EGCGR +
Sbjct: 7266 PHRGAEGRPDPGSVGKTRAVGVIGAWAGCVTAARDGVHNTLCQTEGCGRAVGAAAAAAVV 7087
Query: 61 XXXXXXXXXXXWSHEWGGVDVSTAQSWPRATRNRDARSSSTHLYGVDGTPDVVRPWSGST 120
W HE G VDV TAQ P+ TRNR AR+ S+H+ VDGTP+VVRPW G
Sbjct: 7086 VRRRVDRAVRAWPHERGSVDVPTAQHRPQPTRNRKARAPSSHMCAVDGTPNVVRPWPGGA 6907
Query: 121 TADITATHISXXXXXXXXXXXXYDHLPWGLRKAHKLVSGVQRWEVV 166
D TH+S +DHLPW LR+AH+L +G +RWEVV
Sbjct: 6906 ATDTATTHVSALQGVGAAFVRAHDHLPWRLREAHRLANGGRRWEVV 6769
>emb|AM502223.1| Leishmania infantum chromosome 5
Length = 455874
Score = 115 bits (289), Expect = 3e-24, Method: Composition-based stats.
Identities = 70/156 (44%), Positives = 80/156 (51%)
Frame = -3
Query: 1 PCRRAEGRPNPNSVGEIWXXXXXXXXXXXXXXXLDNVHRTLCQAEGCGRTLNXXXXXXXX 60
P R AEGRP+P S GE LD VH TLCQ EGCGR +
Sbjct: 244915 PHRGAEGRPDPGSAGEARAVGVIRAWAGCVTAALDVVHGTLCQTEGCGRAVGAAATAAVV 244736
Query: 61 XXXXXXXXXXXWSHEWGGVDVSTAQSWPRATRNRDARSSSTHLYGVDGTPDVVRPWSGST 120
W HE GGVDV TAQ PR TRNR AR+ S+H+ VDGTP+VVRPW G
Sbjct: 244735 VRRRVDRAVRAWPHERGGVDVPTAQHRPRPTRNRKARAPSSHMCAVDGTPNVVRPWPGGA 244556
Query: 121 TADITATHISXXXXXXXXXXXXYDHLPWGLRKAHKL 156
D TH+S +DHLPW LR+AH+L
Sbjct: 244555 ATDKATTHVSAVQVVGVAFVRAHDHLPWRLREAHRL 244448
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.317 0.132 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 480675676
Number of extensions: 5487393
Number of successful extensions: 22164
Number of sequences better than 10: 1
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 22163
Number of HSP's successfully gapped: 1
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 16 (7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 78 (34.7 bits)
Query= gi|154332242|ref|NC_009298.1|:subseq(34728,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 5
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
emb|AM494942.1| Leishmania braziliensis chromosome 5 334 5e-90
ref|XM_001561777.1| Leishmania braziliensis MHOM/BR/75/M2904 hyp... 334 5e-90
ref|XM_001687436.1| Leishmania major strain Friedlin hypothetica... 303 9e-81
ref|XM_001462945.1| Leishmania infantum hypothetical protein, co... 290 9e-77
emb|AM502223.1| Leishmania infantum chromosome 5 290 1e-76
ref|XM_805755.1| Trypanosoma cruzi strain CL Brener hypothetical... 180 2e-43
ref|XM_807377.1| Trypanosoma cruzi strain CL Brener hypothetical... 179 2e-43
gb|AC116668.6| Trypanosoma brucei chromosome 5 clone RPCI93-45E2... 166 2e-39
gb|AC159452.1| Trypanosoma brucei chromosome 5 clone RPCI93-5K5,... 166 3e-39
ref|XM_840013.1| Trypanosoma brucei TREU927 hypothetical protein... 165 4e-39
gb|CP000716.1| Thermosipho melanesiensis BI429, complete genome 39 0.66
gb|CP000656.1| Mycobacterium gilvum PYR-GCK, complete genome 35 7.0
gb|AC156563.1| Mus musculus BAC clone RP24-255E14 from 12, compl... 35 7.0
>emb|AM494942.1| Leishmania braziliensis chromosome 5
Length = 459355
Score = 334 bits (857), Expect = 5e-90, Method: Composition-based stats.
Identities = 166/166 (100%), Positives = 166/166 (100%)
Frame = +1
Query: 1 GAVAGVQEQLLAPWQAAGERRVVVFGCRSTAYLTRQLLADTAHSFLVVDPSLKELMVAAT 60
GAVAGVQEQLLAPWQAAGERRVVVFGCRSTAYLTRQLLADTAHSFLVVDPSLKELMVAAT
Sbjct: 34729 GAVAGVQEQLLAPWQAAGERRVVVFGCRSTAYLTRQLLADTAHSFLVVDPSLKELMVAAT 34908
Query: 61 ALTPAFANRLFFLRCESMFACLQVLQPETADVAVVPMPVPFWSKRGSHRRLVHFDFYCAA 120
ALTPAFANRLFFLRCESMFACLQVLQPETADVAVVPMPVPFWSKRGSHRRLVHFDFYCAA
Sbjct: 34909 ALTPAFANRLFFLRCESMFACLQVLQPETADVAVVPMPVPFWSKRGSHRRLVHFDFYCAA 35088
Query: 121 HHVLRVREGPTDPRGVVLFTDCEPYAAFMMEHLEEAKLVVPYTRKN 166
HHVLRVREGPTDPRGVVLFTDCEPYAAFMMEHLEEAKLVVPYTRKN
Sbjct: 35089 HHVLRVREGPTDPRGVVLFTDCEPYAAFMMEHLEEAKLVVPYTRKN 35226
>ref|XM_001561777.1| Leishmania braziliensis MHOM/BR/75/M2904 hypothetical protein,
conserved (LbrM05_V2.0120) partial mRNA
Length = 1017
Score = 334 bits (857), Expect = 5e-90, Method: Composition-based stats.
Identities = 166/166 (100%), Positives = 166/166 (100%)
Frame = +1
Query: 1 GAVAGVQEQLLAPWQAAGERRVVVFGCRSTAYLTRQLLADTAHSFLVVDPSLKELMVAAT 60
GAVAGVQEQLLAPWQAAGERRVVVFGCRSTAYLTRQLLADTAHSFLVVDPSLKELMVAAT
Sbjct: 277 GAVAGVQEQLLAPWQAAGERRVVVFGCRSTAYLTRQLLADTAHSFLVVDPSLKELMVAAT 456
Query: 61 ALTPAFANRLFFLRCESMFACLQVLQPETADVAVVPMPVPFWSKRGSHRRLVHFDFYCAA 120
ALTPAFANRLFFLRCESMFACLQVLQPETADVAVVPMPVPFWSKRGSHRRLVHFDFYCAA
Sbjct: 457 ALTPAFANRLFFLRCESMFACLQVLQPETADVAVVPMPVPFWSKRGSHRRLVHFDFYCAA 636
Query: 121 HHVLRVREGPTDPRGVVLFTDCEPYAAFMMEHLEEAKLVVPYTRKN 166
HHVLRVREGPTDPRGVVLFTDCEPYAAFMMEHLEEAKLVVPYTRKN
Sbjct: 637 HHVLRVREGPTDPRGVVLFTDCEPYAAFMMEHLEEAKLVVPYTRKN 774
>ref|XM_001687436.1| Leishmania major strain Friedlin hypothetical protein, conserved
(LmjF05.0120) partial mRNA
Length = 1017
Score = 303 bits (777), Expect = 9e-81, Method: Composition-based stats.
Identities = 150/166 (90%), Positives = 155/166 (93%)
Frame = +1
Query: 1 GAVAGVQEQLLAPWQAAGERRVVVFGCRSTAYLTRQLLADTAHSFLVVDPSLKELMVAAT 60
GAVAGV+E+LLAPWQA GERRVVVFGCRS AYL RQLLADT HSFLVVDPSLKELM AA
Sbjct: 277 GAVAGVRERLLAPWQAEGERRVVVFGCRSVAYLKRQLLADTTHSFLVVDPSLKELMGAAA 456
Query: 61 ALTPAFANRLFFLRCESMFACLQVLQPETADVAVVPMPVPFWSKRGSHRRLVHFDFYCAA 120
ALTP FA+R+FFLRCESMF CLQVLQPETADVAVVPMPVPFWS+ GSHRRLVHFDFYCAA
Sbjct: 457 ALTPVFAHRVFFLRCESMFTCLQVLQPETADVAVVPMPVPFWSRHGSHRRLVHFDFYCAA 636
Query: 121 HHVLRVREGPTDPRGVVLFTDCEPYAAFMMEHLEEAKLVVPYTRKN 166
H VLRVRE PTDPRGVVLFTDCEPYAAFMMEHLEEAKLVVPYTRKN
Sbjct: 637 HSVLRVREAPTDPRGVVLFTDCEPYAAFMMEHLEEAKLVVPYTRKN 774
>ref|XM_001462945.1| Leishmania infantum hypothetical protein, conserved (LinJ05.0190)
partial mRNA
Length = 1017
Score = 290 bits (743), Expect = 9e-77, Method: Composition-based stats.
Identities = 151/166 (90%), Positives = 155/166 (93%)
Frame = +1
Query: 1 GAVAGVQEQLLAPWQAAGERRVVVFGCRSTAYLTRQLLADTAHSFLVVDPSLKELMVAAT 60
GAVAGV+E+LLAPWQA GERRVVVFGCRS AYL RQLLADT HSFL+VDPSLKELM AA
Sbjct: 277 GAVAGVRERLLAPWQAEGERRVVVFGCRSVAYLKRQLLADTTHSFLIVDPSLKELMGAAA 456
Query: 61 ALTPAFANRLFFLRCESMFACLQVLQPETADVAVVPMPVPFWSKRGSHRRLVHFDFYCAA 120
ALTPAFA R+FFLRCESMF CLQVLQPETADVAVVPMPVPFWSK GSHRRLVHFDFYCAA
Sbjct: 457 ALTPAFARRVFFLRCESMFTCLQVLQPETADVAVVPMPVPFWSKHGSHRRLVHFDFYCAA 636
Query: 121 HHVLRVREGPTDPRGVVLFTDCEPYAAFMMEHLEEAKLVVPYTRKN 166
H VLRVRE PTDPRGVVLFTDCEPYAAFMMEHLEEAKLVVPYTRKN
Sbjct: 637 HSVLRVREAPTDPRGVVLFTDCEPYAAFMMEHLEEAKLVVPYTRKN 774
>emb|AM502223.1| Leishmania infantum chromosome 5
Length = 455874
Score = 290 bits (742), Expect = 1e-76, Method: Composition-based stats.
Identities = 151/166 (90%), Positives = 155/166 (93%)
Frame = +2
Query: 1 GAVAGVQEQLLAPWQAAGERRVVVFGCRSTAYLTRQLLADTAHSFLVVDPSLKELMVAAT 60
GAVAGV+E+LLAPWQA GERRVVVFGCRS AYL RQLLADT HSFL+VDPSLKELM AA
Sbjct: 58373 GAVAGVRERLLAPWQAEGERRVVVFGCRSVAYLKRQLLADTTHSFLIVDPSLKELMGAAA 58552
Query: 61 ALTPAFANRLFFLRCESMFACLQVLQPETADVAVVPMPVPFWSKRGSHRRLVHFDFYCAA 120
ALTPAFA R+FFLRCESMF CLQVLQPETADVAVVPMPVPFWSK GSHRRLVHFDFYCAA
Sbjct: 58553 ALTPAFARRVFFLRCESMFTCLQVLQPETADVAVVPMPVPFWSKHGSHRRLVHFDFYCAA 58732
Query: 121 HHVLRVREGPTDPRGVVLFTDCEPYAAFMMEHLEEAKLVVPYTRKN 166
H VLRVRE PTDPRGVVLFTDCEPYAAFMMEHLEEAKLVVPYTRKN
Sbjct: 58733 HSVLRVREAPTDPRGVVLFTDCEPYAAFMMEHLEEAKLVVPYTRKN 58870
>ref|XM_805755.1| Trypanosoma cruzi strain CL Brener hypothetical protein partial
mRNA
Length = 963
Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats.
Identities = 88/157 (56%), Positives = 112/157 (71%)
Frame = +1
Query: 10 LLAPWQAAGERRVVVFGCRSTAYLTRQLLADTAHSFLVVDPSLKELMVAATALTPAFANR 69
L+ PW +A +R V++ G RS YL RQL D AHS VVD +L L+ AATAL P + R
Sbjct: 298 LVQPWTSAAKRHVLIVGSRSVGYLQRQLAMDKAHSVFVVDHALSALLDAATALVPRYGPR 477
Query: 70 LFFLRCESMFACLQVLQPETADVAVVPMPVPFWSKRGSHRRLVHFDFYCAAHHVLRVREG 129
+ F+R ++ F +++ P TADV VVPMPVPFWS+ GS+RRLV +F C H VLRVREG
Sbjct: 478 VHFVRSDAPFLLQRLMPPTTADVCVVPMPVPFWSESGSYRRLVTREFLCLVHRVLRVREG 657
Query: 130 PTDPRGVVLFTDCEPYAAFMMEHLEEAKLVVPYTRKN 166
P DPRG+V FTD P A FMME LEE++L+VP+TRK+
Sbjct: 658 PADPRGIVTFTDTAPLAEFMMEQLEESRLIVPWTRKD 768
>ref|XM_807377.1| Trypanosoma cruzi strain CL Brener hypothetical protein partial
mRNA
Length = 963
Score = 179 bits (454), Expect = 2e-43, Method: Composition-based stats.
Identities = 87/157 (55%), Positives = 111/157 (70%)
Frame = +1
Query: 10 LLAPWQAAGERRVVVFGCRSTAYLTRQLLADTAHSFLVVDPSLKELMVAATALTPAFANR 69
L+ PW +A +R V++ G RS YL RQL D HS VVD +L L+ AATAL P + R
Sbjct: 298 LVQPWTSAAKRHVLIVGSRSVGYLQRQLAMDKGHSVFVVDHALSALLDAATALVPRYGPR 477
Query: 70 LFFLRCESMFACLQVLQPETADVAVVPMPVPFWSKRGSHRRLVHFDFYCAAHHVLRVREG 129
+ F+R ++ F +++ P TADV VVPMPVPFWS+ GS+RRLV +F C H VLRVREG
Sbjct: 478 VHFVRSDAPFLLQRLMPPTTADVCVVPMPVPFWSESGSYRRLVTREFLCLVHRVLRVREG 657
Query: 130 PTDPRGVVLFTDCEPYAAFMMEHLEEAKLVVPYTRKN 166
P DPRG+V FTD P A FMME LEE++L+VP+TRK+
Sbjct: 658 PADPRGIVTFTDTAPLAEFMMEQLEESRLIVPWTRKD 768
>gb|AC116668.6| Trypanosoma brucei chromosome 5 clone RPCI93-45E22, complete sequence
Length = 141628
Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats.
Identities = 80/160 (50%), Positives = 105/160 (65%)
Frame = -3
Query: 7 QEQLLAPWQAAGERRVVVFGCRSTAYLTRQLLADTAHSFLVVDPSLKELMVAATALTPAF 66
+ ++ W A R+VV+ GC+STAYL R L +SFL++D L L+ AA +L P F
Sbjct: 114071 RHHVVNSWAQAAPRQVVIIGCQSTAYLRRLLSMGDEYSFLIMDRMLSRLLTAAESLVPEF 113892
Query: 67 ANRLFFLRCESMFACLQVLQPETADVAVVPMPVPFWSKRGSHRRLVHFDFYCAAHHVLRV 126
R F+R ++ F Q+L P AD VVPMPVPFWS++ SH+RLV DF+C H +L+
Sbjct: 113891 GPRTQFVRSDAFFLLQQLLPPSVADTCVVPMPVPFWSEQSSHQRLVTRDFFCVIHRILKE 113712
Query: 127 REGPTDPRGVVLFTDCEPYAAFMMEHLEEAKLVVPYTRKN 166
RE PTDPRG V FTD P A FMME L E++L+VP+ RKN
Sbjct: 113711 RESPTDPRGFVTFTDAVPLAEFMMEQLMESRLIVPWVRKN 113592
>gb|AC159452.1| Trypanosoma brucei chromosome 5 clone RPCI93-5K5, complete sequence
Length = 158740
Score = 166 bits (419), Expect = 3e-39, Method: Composition-based stats.
Identities = 80/160 (50%), Positives = 105/160 (65%)
Frame = -1
Query: 7 QEQLLAPWQAAGERRVVVFGCRSTAYLTRQLLADTAHSFLVVDPSLKELMVAATALTPAF 66
+ ++ W A R+VV+ GC+STAYL R L +SFL++D L L+ AA +L P F
Sbjct: 1162 RHHVVNSWAQAAPRQVVIIGCQSTAYLRRLLSMGDEYSFLIMDRMLSRLLTAAESLVPEF 983
Query: 67 ANRLFFLRCESMFACLQVLQPETADVAVVPMPVPFWSKRGSHRRLVHFDFYCAAHHVLRV 126
R F+R ++ F Q+L P AD VVPMPVPFWS++ SH+RLV DF+C H +L+
Sbjct: 982 GPRTQFVRSDAFFLLQQLLPPSVADTCVVPMPVPFWSEQSSHQRLVTRDFFCVIHRILKE 803
Query: 127 REGPTDPRGVVLFTDCEPYAAFMMEHLEEAKLVVPYTRKN 166
RE PTDPRG V FTD P A FMME L E++L+VP+ RKN
Sbjct: 802 RESPTDPRGFVTFTDAVPLAEFMMEQLMESRLIVPWVRKN 683
>ref|XM_840013.1| Trypanosoma brucei TREU927 hypothetical protein partial mRNA
Length = 969
Score = 165 bits (418), Expect = 4e-39, Method: Composition-based stats.
Identities = 80/160 (50%), Positives = 105/160 (65%)
Frame = +1
Query: 7 QEQLLAPWQAAGERRVVVFGCRSTAYLTRQLLADTAHSFLVVDPSLKELMVAATALTPAF 66
+ ++ W A R+VV+ GC+STAYL R L +SFL++D L L+ AA +L P F
Sbjct: 286 RHHVVNSWAQAAPRQVVIIGCQSTAYLRRLLSMGDEYSFLIMDRMLSRLLTAAESLVPEF 465
Query: 67 ANRLFFLRCESMFACLQVLQPETADVAVVPMPVPFWSKRGSHRRLVHFDFYCAAHHVLRV 126
R F+R ++ F Q+L P AD VVPMPVPFWS++ SH+RLV DF+C H +L+
Sbjct: 466 GPRTQFVRSDAFFLLQQLLPPSVADTCVVPMPVPFWSEQSSHQRLVTRDFFCVIHRILKE 645
Query: 127 REGPTDPRGVVLFTDCEPYAAFMMEHLEEAKLVVPYTRKN 166
RE PTDPRG V FTD P A FMME L E++L+VP+ RKN
Sbjct: 646 RESPTDPRGFVTFTDAVPLAEFMMEQLMESRLIVPWVRKN 765
>gb|CP000716.1| Thermosipho melanesiensis BI429, complete genome
Length = 1915238
Score = 38.5 bits (88), Expect = 0.66, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 42/82 (51%)
Frame = -3
Query: 75 CESMFACLQVLQPETADVAVVPMPVPFWSKRGSHRRLVHFDFYCAAHHVLRVREGPTDPR 134
C++ F + E+ D ++ PVP++ SHRR++ +F+ VL++ +G +
Sbjct: 1776129 CDAKFGLREFFSDESIDKVIMNFPVPWYKNSQSHRRIIIKEFFEILSVVLKI-DGEFE-- 1775959
Query: 135 GVVLFTDCEPYAAFMMEHLEEA 156
L TD E YA E+ +E+
Sbjct: 1775958 ---LVTDQEWYAKEAYENAQES 1775902
>gb|CP000656.1| Mycobacterium gilvum PYR-GCK, complete genome
Length = 5619607
Score = 35.4 bits (80), Expect = 7.0, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 32/64 (50%)
Frame = -3
Query: 39 ADTAHSFLVVDPSLKELMVAATALTPAFANRLFFLRCESMFACLQVLQPETADVAVVPMP 98
AD AH+ V P+LKEL V TP RL +R E + L + P+T+ VA +
Sbjct: 3694754 ADVAHAARVSGPTLKELFVRHRNCTP--LQRLQRVRLEHVHRELAMADPQTSTVADIARK 3694581
Query: 99 VPFW 102
FW
Sbjct: 3694580 WGFW 3694569
>gb|AC156563.1| Mus musculus BAC clone RP24-255E14 from 12, complete sequence
Length = 175641
Score = 35.4 bits (80), Expect = 7.0, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = -3
Query: 98 PVPFWSKRGSHRRLVHFDFYCAAHHVLRVREGPTDPRGVVLFTDCEPYAA 147
P+ W R +H R+ H + H V R+G P+ VVL + EP+ A
Sbjct: 114643 PISTWVSRWTHLRVCHIGRFYGCHVVCLPRDGTLVPKVVVLGNEAEPFKA 114494
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.327 0.137 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 559921268
Number of extensions: 9469291
Number of successful extensions: 49737
Number of sequences better than 10: 1
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 49733
Number of HSP's successfully gapped: 1
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 15 (7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.0 bits)
S2: 78 (34.7 bits)
Query= gi|154332242|ref|NC_009298.1|:subseq(34728,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 5
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
ref|XM_001561777.1| Leishmania braziliensis MHOM/BR/75/M2904 hyp... 154 1e-35
emb|AM494942.1| Leishmania braziliensis chromosome 5 154 1e-35
ref|XM_001687436.1| Leishmania major strain Friedlin hypothetica... 85 9e-15
ref|XM_001462945.1| Leishmania infantum hypothetical protein, co... 81 9e-14
emb|AM502223.1| Leishmania infantum chromosome 5 81 9e-14
>ref|XM_001561777.1| Leishmania braziliensis MHOM/BR/75/M2904 hypothetical protein,
conserved (LbrM05_V2.0120) partial mRNA
Length = 1017
Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats.
Identities = 117/147 (79%), Positives = 117/147 (79%)
Frame = +2
Query: 20 DALSYSAAEALHTSRGNFSPTQHTPSSSWTPRURNUWWLPQRSPRRSPTASSFYVASXXX 79
DALSYSAAEALHTSRGNFSPTQHTPSSSWTPR RN WWLPQRSPRRSPTASSFYVAS
Sbjct: 335 DALSYSAAEALHTSRGNFSPTQHTPSSSWTPR*RN*WWLPQRSPRRSPTASSFYVASRCL 514
Query: 80 XXXXXXXXXXXTWRWYQCRCRSGPSVAVTGVLCTSTSTARPTMCCVCGRGPQTLAVLSSS 139
TWRWYQCRCRSGPSVAVTGVLCTSTSTARPTMCCVCGRGPQTLAVLSSS
Sbjct: 515 RVCRCCSRRQRTWRWYQCRCRSGPSVAVTGVLCTSTSTARPTMCCVCGRGPQTLAVLSSS 694
Query: 140 PIVSPMXXXXXXXXXXXXXXCHTPART 166
PIVSPM CHTPART
Sbjct: 695 PIVSPMRPS*WST*RKRSWWCHTPART 775
>emb|AM494942.1| Leishmania braziliensis chromosome 5
Length = 459355
Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats.
Identities = 117/147 (79%), Positives = 117/147 (79%)
Frame = +2
Query: 20 DALSYSAAEALHTSRGNFSPTQHTPSSSWTPRURNUWWLPQRSPRRSPTASSFYVASXXX 79
DALSYSAAEALHTSRGNFSPTQHTPSSSWTPR RN WWLPQRSPRRSPTASSFYVAS
Sbjct: 34787 DALSYSAAEALHTSRGNFSPTQHTPSSSWTPR*RN*WWLPQRSPRRSPTASSFYVASRCL 34966
Query: 80 XXXXXXXXXXXTWRWYQCRCRSGPSVAVTGVLCTSTSTARPTMCCVCGRGPQTLAVLSSS 139
TWRWYQCRCRSGPSVAVTGVLCTSTSTARPTMCCVCGRGPQTLAVLSSS
Sbjct: 34967 RVCRCCSRRQRTWRWYQCRCRSGPSVAVTGVLCTSTSTARPTMCCVCGRGPQTLAVLSSS 35146
Query: 140 PIVSPMXXXXXXXXXXXXXXCHTPART 166
PIVSPM CHTPART
Sbjct: 35147 PIVSPMRPS*WST*RKRSWWCHTPART 35227
>ref|XM_001687436.1| Leishmania major strain Friedlin hypothetical protein, conserved
(LmjF05.0120) partial mRNA
Length = 1017
Score = 84.7 bits (208), Expect = 9e-15, Method: Composition-based stats.
Identities = 77/135 (57%), Positives = 79/135 (58%)
Frame = +2
Query: 32 TSRGNFSPTQHTPSSSWTPRURNUWWLPQRSPRRSPTASSFYVASXXXXXXXXXXXXXXT 91
TS GN S TQHTPSSSWTPR R+ W PQ SPR SPT SSFY AS T
Sbjct: 371 TSSGNSSLTQHTPSSSWTPR*RS*WGPPQLSPRCSPTVSSFYAASRCLLVCRCCSRRQPT 550
Query: 92 WRWYQCRCRSGPSVAVTGVLCTSTSTARPTMCCVCGRGPQTLAVLSSSPIVSPMXXXXXX 151
W CRC SG A T CTSTSTARPT+CCV GR PQT AVLSSSPIVSP
Sbjct: 551 WL*CPCRCHSGLGTAATDASCTSTSTARPTVCCVSGRRPQTPAVLSSSPIVSPTRLS*WS 730
Query: 152 XXXXXXXXCHTPART 166
C TPART
Sbjct: 731 TWRKQSWWCRTPART 775
>ref|XM_001462945.1| Leishmania infantum hypothetical protein, conserved (LinJ05.0190)
partial mRNA
Length = 1017
Score = 81.3 bits (199), Expect = 9e-14, Method: Composition-based stats.
Identities = 78/135 (57%), Positives = 80/135 (59%)
Frame = +2
Query: 32 TSRGNFSPTQHTPSSSWTPRURNUWWLPQRSPRRSPTASSFYVASXXXXXXXXXXXXXXT 91
TS GN S T HT SSSWTPR R+ W PQ SPRRSP ASSF AS T
Sbjct: 371 TSSGNSSLTLHTLSSSWTPR*RS*WEPPQLSPRRSPAASSFCAASRCLLVCRCCSRRRPT 550
Query: 92 WRWYQCRCRSGPSVAVTGVLCTSTSTARPTMCCVCGRGPQTLAVLSSSPIVSPMXXXXXX 151
WR CRC SGPS A T L TSTSTARPT+CCV GR PQT AVLSSSPIVSP
Sbjct: 551 WR*CLCRCHSGPSTAATDALFTSTSTARPTVCCVSGRRPQTPAVLSSSPIVSPTRLS*WS 730
Query: 152 XXXXXXXXCHTPART 166
C TPART
Sbjct: 731 TWRRRSWWCRTPART 775
>emb|AM502223.1| Leishmania infantum chromosome 5
Length = 455874
Score = 81.3 bits (199), Expect = 9e-14, Method: Composition-based stats.
Identities = 78/135 (57%), Positives = 80/135 (59%)
Frame = +3
Query: 32 TSRGNFSPTQHTPSSSWTPRURNUWWLPQRSPRRSPTASSFYVASXXXXXXXXXXXXXXT 91
TS GN S T HT SSSWTPR R+ W PQ SPRRSP ASSF AS T
Sbjct: 58467 TSSGNSSLTLHTLSSSWTPR*RS*WEPPQLSPRRSPAASSFCAASRCLLVCRCCSRRRPT 58646
Query: 92 WRWYQCRCRSGPSVAVTGVLCTSTSTARPTMCCVCGRGPQTLAVLSSSPIVSPMXXXXXX 151
WR CRC SGPS A T L TSTSTARPT+CCV GR PQT AVLSSSPIVSP
Sbjct: 58647 WR*CLCRCHSGPSTAATDALFTSTSTARPTVCCVSGRRPQTPAVLSSSPIVSPTRLS*WS 58826
Query: 152 XXXXXXXXCHTPART 166
C TPART
Sbjct: 58827 TWRRRSWWCRTPART 58871
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.319 0.125 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 552006920
Number of extensions: 10114543
Number of successful extensions: 85098
Number of sequences better than 10: 10
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 84904
Number of HSP's successfully gapped: 11
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 16 (7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 78 (34.7 bits)
Query= gi|154332242|ref|NC_009298.1|:subseq(34728,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 5
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
ref|XM_001561777.1| Leishmania braziliensis MHOM/BR/75/M2904 hyp... 210 1e-52
emb|AM494942.1| Leishmania braziliensis chromosome 5 210 1e-52
ref|XM_001687436.1| Leishmania major strain Friedlin hypothetica... 139 3e-31
emb|AM502223.1| Leishmania infantum chromosome 5 125 5e-27
ref|XM_001462945.1| Leishmania infantum hypothetical protein, co... 123 2e-26
>ref|XM_001561777.1| Leishmania braziliensis MHOM/BR/75/M2904 hypothetical protein,
conserved (LbrM05_V2.0120) partial mRNA
Length = 1017
Score = 210 bits (534), Expect = 1e-52, Method: Composition-based stats.
Identities = 135/166 (81%), Positives = 135/166 (81%)
Frame = +3
Query: 1 CCRWGSRAALSALAGCGUETRCRIRLPKHCIPHAATSRRHSTLLPRRGPLAEGIDGGCHS 60
CCRWGSRAALSALAGCG ETRCRIRLPKHCIPHAATSRRHSTLLPRRGPLAEGIDGGCHS
Sbjct: 279 CCRWGSRAALSALAGCG*ETRCRIRLPKHCIPHAATSRRHSTLLPRRGPLAEGIDGGCHS 458
Query: 61 AHPGVRQPPLLSTLRVDVCVSXXXXXXXXXXXXXXXXXXVLVQAWQSPASCALRLLLRXX 120
AHPGVRQPPLLSTLRVDVCVS VLVQAWQSPASCALRLLLR
Sbjct: 459 AHPGVRQPPLLSTLRVDVCVSAGAAAGDSGRGGGTNAGAVLVQAWQSPASCALRLLLRGP 638
Query: 121 XXXXXXXXXHRPSRCCPLHRLUALCGLHDGAPRGSEAGGAIHPQEP 166
HRPSRCCPLHRL ALCGLHDGAPRGSEAGGAIHPQEP
Sbjct: 639 PCAACAGGAHRPSRCCPLHRL*ALCGLHDGAPRGSEAGGAIHPQEP 776
>emb|AM494942.1| Leishmania braziliensis chromosome 5
Length = 459355
Score = 210 bits (534), Expect = 1e-52, Method: Composition-based stats.
Identities = 135/166 (81%), Positives = 135/166 (81%)
Frame = +3
Query: 1 CCRWGSRAALSALAGCGUETRCRIRLPKHCIPHAATSRRHSTLLPRRGPLAEGIDGGCHS 60
CCRWGSRAALSALAGCG ETRCRIRLPKHCIPHAATSRRHSTLLPRRGPLAEGIDGGCHS
Sbjct: 34731 CCRWGSRAALSALAGCG*ETRCRIRLPKHCIPHAATSRRHSTLLPRRGPLAEGIDGGCHS 34910
Query: 61 AHPGVRQPPLLSTLRVDVCVSXXXXXXXXXXXXXXXXXXVLVQAWQSPASCALRLLLRXX 120
AHPGVRQPPLLSTLRVDVCVS VLVQAWQSPASCALRLLLR
Sbjct: 34911 AHPGVRQPPLLSTLRVDVCVSAGAAAGDSGRGGGTNAGAVLVQAWQSPASCALRLLLRGP 35090
Query: 121 XXXXXXXXXHRPSRCCPLHRLUALCGLHDGAPRGSEAGGAIHPQEP 166
HRPSRCCPLHRL ALCGLHDGAPRGSEAGGAIHPQEP
Sbjct: 35091 PCAACAGGAHRPSRCCPLHRL*ALCGLHDGAPRGSEAGGAIHPQEP 35228
>ref|XM_001687436.1| Leishmania major strain Friedlin hypothetical protein, conserved
(LmjF05.0120) partial mRNA
Length = 1017
Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats.
Identities = 97/166 (58%), Positives = 108/166 (65%)
Frame = +3
Query: 1 CCRWGSRAALSALAGCGUETRCRIRLPKHCIPHAATSRRHSTLLPRRGPLAEGIDGGCHS 60
C W S AALSA+AG G RCR+RLP+ C+P AAT R H+TLLPRRGPLAEG+DGG S
Sbjct: 279 CRCWSSGAALSAVAGGGRAARCRVRLPQRCVPQAATPR*HNTLLPRRGPLAEGVDGGRRS 458
Query: 61 AHPGVRQPPLLSTLRVDVCVSXXXXXXXXXXXXXXXXXXVLVQAWQSPASCALRLLLRXX 120
+HPGVR P LLSTLRVDV +S +LV A Q P ALRLLLR
Sbjct: 459 SHPGVRPPCLLSTLRVDVYLSAGAAAGDSRRGCSAHAGAILV*ARQPPTPRALRLLLRGP 638
Query: 121 XXXXXXXXXHRPSRCCPLHRLUALCGLHDGAPRGSEAGGAIHPQEP 166
HRP RCCPLHRL AL G HDGAP GS+ GGA+HPQEP
Sbjct: 639 QCAACPGGAHRPPRCCPLHRL*ALRGFHDGAPGGSKVGGAVHPQEP 776
>emb|AM502223.1| Leishmania infantum chromosome 5
Length = 455874
Score = 125 bits (314), Expect = 5e-27, Method: Composition-based stats.
Identities = 91/159 (57%), Positives = 101/159 (63%)
Frame = +1
Query: 8 AALSALAGCGUETRCRIRLPKHCIPHAATSRRHSTLLPRRGPLAEGIDGGCHSAHPGVRQ 67
AALSA+AG G RCR+RLP+ C+P AAT R H TL P RGPLAEG+DG S+HPGVR
Sbjct: 58396 AALSAVAGGGRAARCRVRLPQRCVPQAATPR*HYTLFPHRGPLAEGVDGSRRSSHPGVRP 58575
Query: 68 PPLLSTLRVDVCVSXXXXXXXXXXXXXXXXXXVLVQAWQSPASCALRLLLRXXXXXXXXX 127
P LLS LRVDV +S +LVQA Q P C+LRLLLR
Sbjct: 58576 PRLLSALRVDVYLSAGAAAGDGRRGGSAYAGAILVQARQPPTPCSLRLLLRGPQCAACPG 58755
Query: 128 XXHRPSRCCPLHRLUALCGLHDGAPRGSEAGGAIHPQEP 166
HRP RCCPLHRL AL G HDGAP G E GGA+HPQEP
Sbjct: 58756 GAHRPPRCCPLHRL*ALRGFHDGAPGGGEVGGAVHPQEP 58872
>ref|XM_001462945.1| Leishmania infantum hypothetical protein, conserved (LinJ05.0190)
partial mRNA
Length = 1017
Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats.
Identities = 91/159 (57%), Positives = 101/159 (63%)
Frame = +3
Query: 8 AALSALAGCGUETRCRIRLPKHCIPHAATSRRHSTLLPRRGPLAEGIDGGCHSAHPGVRQ 67
AALSA+AG G RCR+RLP+ C+P AAT R H TL P RGPLAEG+DG S+HPGVR
Sbjct: 300 AALSAVAGGGRAARCRVRLPQRCVPQAATPR*HYTLFPHRGPLAEGVDGSRRSSHPGVRP 479
Query: 68 PPLLSTLRVDVCVSXXXXXXXXXXXXXXXXXXVLVQAWQSPASCALRLLLRXXXXXXXXX 127
P LLS LRVDV +S +LVQA Q P C+LRLLLR
Sbjct: 480 PRLLSALRVDVYLSAGAAAGDGRRGGSAYAGAILVQARQPPTPCSLRLLLRGPQCAACPG 659
Query: 128 XXHRPSRCCPLHRLUALCGLHDGAPRGSEAGGAIHPQEP 166
HRP RCCPLHRL AL G HDGAP G E GGA+HPQEP
Sbjct: 660 GAHRPPRCCPLHRL*ALRGFHDGAPGGGEVGGAVHPQEP 776
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.325 0.139 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 703047610
Number of extensions: 12400564
Number of successful extensions: 98064
Number of sequences better than 10: 5
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 98007
Number of HSP's successfully gapped: 6
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 15 (7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.0 bits)
S2: 78 (34.7 bits)
Query= gi|154332242|ref|NC_009298.1|:subseq(81430,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 5
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
emb|AM494942.1| Leishmania braziliensis chromosome 5 119 4e-25
ref|XM_001561789.1| Leishmania braziliensis MHOM/BR/75/M2904 hyp... 116 2e-24
ref|XM_001462949.1| Leishmania infantum hypothetical protein, co... 58 8e-07
emb|AM502223.1| Leishmania infantum chromosome 5 58 8e-07
emb|AM494944.1| Leishmania braziliensis chromosome 7 50 3e-04
ref|XM_001562498.1| Leishmania braziliensis MHOM/BR/75/M2904 hyp... 45 0.006
ref|XM_001687450.1| Leishmania major strain Friedlin hypothetica... 45 0.010
>emb|AM494942.1| Leishmania braziliensis chromosome 5
Length = 459355
Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats.
Identities = 75/112 (66%), Positives = 75/112 (66%)
Frame = +2
Query: 55 HPTLQTPASPPAALWQHCPAHSAARVAAHEHNTAGGHDHVRYPLLVSUGAACXWRCGAFR 114
HPTLQTPASPPAALWQHCPAHSAARVAAHEHNTAGGHDHVRYPLLVS GAAC WRCGAFR
Sbjct: 81593 HPTLQTPASPPAALWQHCPAHSAARVAAHEHNTAGGHDHVRYPLLVS*GAAC*WRCGAFR 81772
Query: 115 ELRXXXXXXXXXXXXXLRWYTSXXXXXXXXXXXXXXXXXXXXXXHCRTEGSH 166
ELR LRWYTS HCRTEGSH
Sbjct: 81773 ELRVSTSAVAAE*AESLRWYTSPLGRPRPRA*RCALSRRARR*LHCRTEGSH 81928
>ref|XM_001561789.1| Leishmania braziliensis MHOM/BR/75/M2904 hypothetical protein,
conserved (LbrM05_V2.0250) partial mRNA
Length = 954
Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats.
Identities = 75/112 (66%), Positives = 75/112 (66%)
Frame = +3
Query: 55 HPTLQTPASPPAALWQHCPAHSAARVAAHEHNTAGGHDHVRYPLLVSUGAACXWRCGAFR 114
HPTLQTPASPPAALWQHCPAHSAARVAAHEHNTAGGHDHVRYPLLVS GAAC WRCGAFR
Sbjct: 237 HPTLQTPASPPAALWQHCPAHSAARVAAHEHNTAGGHDHVRYPLLVS*GAAC*WRCGAFR 416
Query: 115 ELRXXXXXXXXXXXXXLRWYTSXXXXXXXXXXXXXXXXXXXXXXHCRTEGSH 166
ELR LRWYTS HCRTEGSH
Sbjct: 417 ELRVSTSAVAAE*AESLRWYTSPLGRPRPRA*RCALSRRARR*LHCRTEGSH 572
>ref|XM_001462949.1| Leishmania infantum hypothetical protein, conserved (LinJ05.0230)
partial mRNA
Length = 1161
Score = 58.2 bits (139), Expect = 8e-07, Method: Composition-based stats.
Identities = 51/113 (45%), Positives = 53/113 (46%), Gaps = 1/113 (0%)
Frame = +3
Query: 55 HPTLQTPASPPAALWQHCPAHSAARVAAHEHNTAGGHDHVRYPLLVSUGA-ACXWRCGAF 113
HP LQ A PP A Q AHSAARVA+HEHN AGGHD VRY LLVS GA C W G
Sbjct: 432 HPPLQASACPPTAPRQRRRAHSAARVASHEHNAAGGHDPVRYSLLVSRGADGCCWCSGVR 611
Query: 114 RELRXXXXXXXXXXXXXLRWYTSXXXXXXXXXXXXXXXXXXXXXXHCRTEGSH 166
EL LRWYTS CR +GSH
Sbjct: 612 GELSASASALAAEQAQPLRWYTSPLGCPCPRARHGALPRGARR*LQCRAKGSH 770
>emb|AM502223.1| Leishmania infantum chromosome 5
Length = 455874
Score = 58.2 bits (139), Expect = 8e-07, Method: Composition-based stats.
Identities = 51/113 (45%), Positives = 53/113 (46%), Gaps = 1/113 (0%)
Frame = +3
Query: 55 HPTLQTPASPPAALWQHCPAHSAARVAAHEHNTAGGHDHVRYPLLVSUGA-ACXWRCGAF 113
HP LQ A PP A Q AHSAARVA+HEHN AGGHD VRY LLVS GA C W G
Sbjct: 70212 HPPLQASACPPTAPRQRRRAHSAARVASHEHNAAGGHDPVRYSLLVSRGADGCCWCSGVR 70391
Query: 114 RELRXXXXXXXXXXXXXLRWYTSXXXXXXXXXXXXXXXXXXXXXXHCRTEGSH 166
EL LRWYTS CR +GSH
Sbjct: 70392 GELSASASALAAEQAQPLRWYTSPLGCPCPRARHGALPRGARR*LQCRAKGSH 70550
>emb|AM494944.1| Leishmania braziliensis chromosome 7
Length = 586128
Score = 49.7 bits (117), Expect = 3e-04, Method: Composition-based stats.
Identities = 27/27 (100%), Positives = 27/27 (100%)
Frame = -3
Query: 55 HPTLQTPASPPAALWQHCPAHSAARVA 81
HPTLQTPASPPAALWQHCPAHSAARVA
Sbjct: 225517 HPTLQTPASPPAALWQHCPAHSAARVA 225437
>ref|XM_001562498.1| Leishmania braziliensis MHOM/BR/75/M2904 hypothetical protein,
conserved (LbrM07_V2.0520) mRNA, partial cds
Length = 318
Score = 45.4 bits (106), Expect = 0.006, Method: Composition-based stats.
Identities = 27/27 (100%), Positives = 27/27 (100%)
Frame = +3
Query: 55 HPTLQTPASPPAALWQHCPAHSAARVA 81
HPTLQTPASPPAALWQHCPAHSAARVA
Sbjct: 237 HPTLQTPASPPAALWQHCPAHSAARVA 317
>ref|XM_001687450.1| Leishmania major strain Friedlin hypothetical protein, conserved
(LmjF05.0260) partial mRNA
Length = 1182
Score = 44.7 bits (104), Expect = 0.010, Method: Composition-based stats.
Identities = 49/113 (43%), Positives = 52/113 (46%), Gaps = 1/113 (0%)
Frame = +3
Query: 55 HPTLQTPASPPAALWQHCPAHSAARVAAHEHNTAGGHDHVRYPLLVSUGAACXWRCGAFR 114
HP LQ A PP A Q AHSAAR A+HEHN AGGHD VRY LL+S GA W C R
Sbjct: 450 HPPLQASACPPTAPQQRRRAHSAARAASHEHNAAGGHDPVRYSLLLSRGADGCWWCSGVR 629
Query: 115 -ELRXXXXXXXXXXXXXLRWYTSXXXXXXXXXXXXXXXXXXXXXXHCRTEGSH 166
EL LRWYTS HC +GSH
Sbjct: 630 GELSASASALAAEQAQPLRWYTSPLGCPCPRARHGALPREARR*LHCGAKGSH 788
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.329 0.135 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 386735695
Number of extensions: 5857991
Number of successful extensions: 76993
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 76634
Number of HSP's successfully gapped: 0
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 15 (7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.0 bits)
S2: 78 (34.7 bits)
Query= gi|154332242|ref|NC_009298.1|:subseq(81430,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 5
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
emb|AM494942.1| Leishmania braziliensis chromosome 5 228 5e-58
ref|XM_001561789.1| Leishmania braziliensis MHOM/BR/75/M2904 hyp... 227 1e-57
ref|XM_001462949.1| Leishmania infantum hypothetical protein, co... 198 5e-49
emb|AM502223.1| Leishmania infantum chromosome 5 197 7e-49
ref|XM_001687450.1| Leishmania major strain Friedlin hypothetica... 196 3e-48
ref|XM_818190.1| Trypanosoma brucei TREU927 hypothetical protein... 61 1e-07
ref|XM_804791.1| Trypanosoma cruzi strain CL Brener hypothetical... 59 4e-07
ref|XM_800296.1| Trypanosoma cruzi strain CL Brener hypothetical... 58 1e-06
ref|XM_001562498.1| Leishmania braziliensis MHOM/BR/75/M2904 hyp... 57 1e-06
emb|AM494944.1| Leishmania braziliensis chromosome 7 57 2e-06
ref|XM_001321368.1| Trichomonas vaginalis G3 ankyrin repeat prot... 43 0.039
ref|XM_638458.1| Dictyostelium discoideum AX4 hypothetical prote... 40 0.27
gb|AC115598.2| Dictyostelium discoideum chromosome 2 map 581427-... 40 0.27
ref|XM_380726.1| Gibberella zeae PH-1 hypothetical protein parti... 39 0.41
ref|XM_001265590.1| Neosartorya fischeri NRRL 181 Ankyrin repeat... 39 0.47
gb|CP001102.1| Candidatus Amoebophilus asiaticus 5a2, complete g... 39 0.78
ref|XM_778837.2| PREDICTED: Strongylocentrotus purpuratus simila... 38 1.3
ref|XM_001204018.1| PREDICTED: Strongylocentrotus purpuratus sim... 38 1.3
ref|XM_001189745.1| PREDICTED: Strongylocentrotus purpuratus sim... 37 2.0
ref|XM_788547.2| PREDICTED: Strongylocentrotus purpuratus simila... 37 2.0
ref|XM_676982.1| Aspergillus nidulans FGSC A4 hypothetical prote... 37 2.0
ref|XM_001189014.1| PREDICTED: Strongylocentrotus purpuratus sim... 37 2.1
ref|XM_781484.2| PREDICTED: Strongylocentrotus purpuratus simila... 37 2.1
ref|XM_001315095.1| Trichomonas vaginalis G3 ankyrin repeat prot... 37 2.1
ref|XM_001323853.1| Trichomonas vaginalis G3 ankyrin repeat prot... 37 2.5
ref|XM_001214336.1| Aspergillus terreus NIH2624 conserved hypoth... 37 2.8
ref|XM_001309943.1| Trichomonas vaginalis G3 hypothetical protei... 36 3.2
gb|EZ043707.1| TSA: Acropora millepora SeqIndex8756, mRNA sequence 36 3.4
ref|XM_001259731.1| Neosartorya fischeri NRRL 181 ankyrin repeat... 36 3.7
ref|XM_812554.1| Trypanosoma cruzi strain CL Brener hypothetical... 35 6.1
ref|XM_001956091.1| Drosophila ananassae GF25050 (Dana\GF25050),... 35 6.3
ref|XM_001274097.1| Aspergillus clavatus NRRL 1 ankyrin repeat p... 35 6.4
gb|CP000505.1| Thermofilum pendens Hrk 5, complete genome 35 9.7
>emb|AM494942.1| Leishmania braziliensis chromosome 5
Length = 459355
Score = 228 bits (581), Expect = 5e-58, Method: Composition-based stats.
Identities = 112/112 (100%), Positives = 112/112 (100%)
Frame = +3
Query: 55 ILLYKRLLAHQLHCGSIAQHIQQHGLLRMSTTPPVDMTMYGILFSCREVPPASGAAEHSE 114
ILLYKRLLAHQLHCGSIAQHIQQHGLLRMSTTPPVDMTMYGILFSCREVPPASGAAEHSE
Sbjct: 81594 ILLYKRLLAHQLHCGSIAQHIQQHGLLRMSTTPPVDMTMYGILFSCREVPPASGAAEHSE 81773
Query: 115 SSVSLQVRWQPSKRSRYAGTPLHWAVLARAHDAVRFLVEHGADCTAGLKAVT 166
SSVSLQVRWQPSKRSRYAGTPLHWAVLARAHDAVRFLVEHGADCTAGLKAVT
Sbjct: 81774 SSVSLQVRWQPSKRSRYAGTPLHWAVLARAHDAVRFLVEHGADCTAGLKAVT 81929
>ref|XM_001561789.1| Leishmania braziliensis MHOM/BR/75/M2904 hypothetical protein,
conserved (LbrM05_V2.0250) partial mRNA
Length = 954
Score = 227 bits (578), Expect = 1e-57, Method: Composition-based stats.
Identities = 112/112 (100%), Positives = 112/112 (100%)
Frame = +1
Query: 55 ILLYKRLLAHQLHCGSIAQHIQQHGLLRMSTTPPVDMTMYGILFSCREVPPASGAAEHSE 114
ILLYKRLLAHQLHCGSIAQHIQQHGLLRMSTTPPVDMTMYGILFSCREVPPASGAAEHSE
Sbjct: 238 ILLYKRLLAHQLHCGSIAQHIQQHGLLRMSTTPPVDMTMYGILFSCREVPPASGAAEHSE 417
Query: 115 SSVSLQVRWQPSKRSRYAGTPLHWAVLARAHDAVRFLVEHGADCTAGLKAVT 166
SSVSLQVRWQPSKRSRYAGTPLHWAVLARAHDAVRFLVEHGADCTAGLKAVT
Sbjct: 418 SSVSLQVRWQPSKRSRYAGTPLHWAVLARAHDAVRFLVEHGADCTAGLKAVT 573
>ref|XM_001462949.1| Leishmania infantum hypothetical protein, conserved (LinJ05.0230)
partial mRNA
Length = 1161
Score = 198 bits (503), Expect = 5e-49, Method: Composition-based stats.
Identities = 99/113 (87%), Positives = 104/113 (92%), Gaps = 1/113 (0%)
Frame = +1
Query: 55 ILLYKRLLAHQLHCGSIAQHIQQHGLLRMSTTPPVDMTMYGILFSCREVPPAS-GAAEHS 113
ILLYKRLLAHQLH S+A+HIQQHGLLRMSTTPPVDMT+YGILFSCREVP A+ GAA
Sbjct: 433 ILLYKRLLAHQLHRDSVAEHIQQHGLLRMSTTPPVDMTLYGILFSCREVPTAAVGAAVSE 612
Query: 114 ESSVSLQVRWQPSKRSRYAGTPLHWAVLARAHDAVRFLVEHGADCTAGLKAVT 166
ESSV LQVRWQPSKRSRYAGTPLHWAVLARAHD VRFLVEHGADC+AGLKAVT
Sbjct: 613 ESSVPLQVRWQPSKRSRYAGTPLHWAVLARAHDTVRFLVEHGADCSAGLKAVT 771
>emb|AM502223.1| Leishmania infantum chromosome 5
Length = 455874
Score = 197 bits (502), Expect = 7e-49, Method: Composition-based stats.
Identities = 99/113 (87%), Positives = 104/113 (92%), Gaps = 1/113 (0%)
Frame = +1
Query: 55 ILLYKRLLAHQLHCGSIAQHIQQHGLLRMSTTPPVDMTMYGILFSCREVPPAS-GAAEHS 113
ILLYKRLLAHQLH S+A+HIQQHGLLRMSTTPPVDMT+YGILFSCREVP A+ GAA
Sbjct: 70213 ILLYKRLLAHQLHRDSVAEHIQQHGLLRMSTTPPVDMTLYGILFSCREVPTAAVGAAVSE 70392
Query: 114 ESSVSLQVRWQPSKRSRYAGTPLHWAVLARAHDAVRFLVEHGADCTAGLKAVT 166
ESSV LQVRWQPSKRSRYAGTPLHWAVLARAHD VRFLVEHGADC+AGLKAVT
Sbjct: 70393 ESSVPLQVRWQPSKRSRYAGTPLHWAVLARAHDTVRFLVEHGADCSAGLKAVT 70551
>ref|XM_001687450.1| Leishmania major strain Friedlin hypothetical protein, conserved
(LmjF05.0260) partial mRNA
Length = 1182
Score = 196 bits (497), Expect = 3e-48, Method: Composition-based stats.
Identities = 98/113 (86%), Positives = 103/113 (91%), Gaps = 1/113 (0%)
Frame = +1
Query: 55 ILLYKRLLAHQLHCGSIAQHIQQHGLLRMSTTPPVDMTMYGILFSCREVPPASG-AAEHS 113
ILLYKRLLAHQLH S+A+HIQQHGLLRMSTTPPVDMT+YGILFSCREVP A+G AA
Sbjct: 451 ILLYKRLLAHQLHRNSVAEHIQQHGLLRMSTTPPVDMTLYGILFSCREVPTAAGGAAVSE 630
Query: 114 ESSVSLQVRWQPSKRSRYAGTPLHWAVLARAHDAVRFLVEHGADCTAGLKAVT 166
ESSV LQVRWQPSKRSRYAGTPLHWAVLA AHD VRFLV+HGADCTAGLKAVT
Sbjct: 631 ESSVPLQVRWQPSKRSRYAGTPLHWAVLAHAHDTVRFLVKHGADCTAGLKAVT 789
>ref|XM_818190.1| Trypanosoma brucei TREU927 hypothetical protein (Tb10.406.0270)
partial mRNA
Length = 783
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 36/101 (35%), Positives = 53/101 (52%)
Frame = +1
Query: 57 LYKRLLAHQLHCGSIAQHIQQHGLLRMSTTPPVDMTMYGILFSCREVPPASGAAEHSESS 116
L K++ + H +A+ ++ G L + T +G F C E GA
Sbjct: 169 LLKQMDLQKKHRQKVAKLLETTGTLHVIETK----ENFGFTFRCVE---DCGAG------ 309
Query: 117 VSLQVRWQPSKRSRYAGTPLHWAVLARAHDAVRFLVEHGAD 157
+L+ +++PSKRS Y PLHWAVL R+HDAV+FL+ G D
Sbjct: 310 -TLRPQFKPSKRSSYPAAPLHWAVLGRSHDAVKFLIRSGVD 429
>ref|XM_804791.1| Trypanosoma cruzi strain CL Brener hypothetical protein partial
mRNA
Length = 756
Score = 59.3 bits (142), Expect = 4e-07, Method: Composition-based stats.
Identities = 36/102 (35%), Positives = 54/102 (52%)
Frame = +1
Query: 56 LLYKRLLAHQLHCGSIAQHIQQHGLLRMSTTPPVDMTMYGILFSCREVPPASGAAEHSES 115
L +RL Q ++A + + GLLR+ T YG +F E + GA
Sbjct: 154 LSIRRLERAQKRRATVASLLGKPGLLRVVETG----EEYGFMFRVEETYDSEGARR---- 309
Query: 116 SVSLQVRWQPSKRSRYAGTPLHWAVLARAHDAVRFLVEHGAD 157
L+ +++ +++SRY PLHWAVL R+H AV FLV++G D
Sbjct: 310 ---LKPKFKLTRKSRYPAMPLHWAVLGRSHRAVEFLVKNGVD 426
>ref|XM_800296.1| Trypanosoma cruzi strain CL Brener hypothetical protein partial
mRNA
Length = 747
Score = 57.8 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 36/102 (35%), Positives = 53/102 (51%)
Frame = +1
Query: 56 LLYKRLLAHQLHCGSIAQHIQQHGLLRMSTTPPVDMTMYGILFSCREVPPASGAAEHSES 115
L +RL Q ++A + + GLLR+ T YG +F E SE
Sbjct: 154 LSIRRLERAQKRRATVASLLGKPGLLRVVETG----EEYGFMFRVEET-------YDSEG 300
Query: 116 SVSLQVRWQPSKRSRYAGTPLHWAVLARAHDAVRFLVEHGAD 157
L+ +++ +++SRY PLHWAVL R+H AV FLV++G D
Sbjct: 301 GRRLKPKFKLTRKSRYPAMPLHWAVLGRSHRAVEFLVKNGVD 426
>ref|XM_001562498.1| Leishmania braziliensis MHOM/BR/75/M2904 hypothetical protein,
conserved (LbrM07_V2.0520) mRNA, partial cds
Length = 318
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 27/27 (100%), Positives = 27/27 (100%)
Frame = +1
Query: 55 ILLYKRLLAHQLHCGSIAQHIQQHGLL 81
ILLYKRLLAHQLHCGSIAQHIQQHGLL
Sbjct: 238 ILLYKRLLAHQLHCGSIAQHIQQHGLL 318
>emb|AM494944.1| Leishmania braziliensis chromosome 7
Length = 586128
Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 27/27 (100%), Positives = 27/27 (100%)
Frame = -1
Query: 55 ILLYKRLLAHQLHCGSIAQHIQQHGLL 81
ILLYKRLLAHQLHCGSIAQHIQQHGLL
Sbjct: 225516 ILLYKRLLAHQLHCGSIAQHIQQHGLL 225436
>ref|XM_001321368.1| Trichomonas vaginalis G3 ankyrin repeat protein, putative
(TVAG_363950) partial mRNA
Length = 1908
Score = 42.7 bits (99), Expect = 0.039, Method: Composition-based stats.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Frame = +1
Query: 134 TPLHWAVLARAHDAVRFLVEHGADCT 159
TPLH AVL+ A+D + L+EHGADCT
Sbjct: 1708 TPLHMAVLSSAYDVIETLLEHGADCT 1785
>ref|XM_638458.1| Dictyostelium discoideum AX4 hypothetical protein (DDBDRAFT_0167213)
partial mRNA
Length = 4269
Score = 40.0 bits (92), Expect = 0.27, Method: Composition-based stats.
Identities = 18/39 (46%), Positives = 25/39 (64%)
Frame = +1
Query: 119 LQVRWQPSKRSRYAGTPLHWAVLARAHDAVRFLVEHGAD 157
L++R P+ + TPLHW+V A DAV+ L+E GAD
Sbjct: 1906 LRIRVSPNCPDKEGWTPLHWSVKANNLDAVQLLLEFGAD 2022
>gb|AC115598.2| Dictyostelium discoideum chromosome 2 map 581427-735498 strain AX4,
complete sequence
Length = 154071
Score = 40.0 bits (92), Expect = 0.27, Method: Composition-based stats.
Identities = 18/39 (46%), Positives = 25/39 (64%)
Frame = +3
Query: 119 LQVRWQPSKRSRYAGTPLHWAVLARAHDAVRFLVEHGAD 157
L++R P+ + TPLHW+V A DAV+ L+E GAD
Sbjct: 34455 LRIRVSPNCPDKEGWTPLHWSVKANNLDAVQLLLEFGAD 34571
>ref|XM_380726.1| Gibberella zeae PH-1 hypothetical protein partial mRNA
Length = 5508
Score = 39.3 bits (90), Expect = 0.41, Method: Composition-based stats.
Identities = 19/38 (50%), Positives = 24/38 (63%)
Frame = +1
Query: 125 PSKRSRYAGTPLHWAVLARAHDAVRFLVEHGADCTAGL 162
P+KR TPLH AV+A + V+ LV+HGA TA L
Sbjct: 1579 PNKRDYTGRTPLHLAVMASTPEVVKCLVDHGARLTARL 1692
>ref|XM_001265590.1| Neosartorya fischeri NRRL 181 Ankyrin repeat protein (NFIA_032580)
partial mRNA
Length = 2631
Score = 39.3 bits (90), Expect = 0.47, Method: Composition-based stats.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Frame = +1
Query: 127 KRSRYAGTPLHWAVLARAHDAVRFLVEHGAD 157
K ++ TPLHWA + D +R LVEHGAD
Sbjct: 1687 KDRKFHWTPLHWAAVTNRADKMRILVEHGAD 1779
>gb|CP001102.1| Candidatus Amoebophilus asiaticus 5a2, complete genome
Length = 1884364
Score = 38.5 bits (88), Expect = 0.78, Method: Composition-based stats.
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = -1
Query: 125 PSKRSRYAGTPLHWAVLARAHDAVRFLVEHGADCTA 160
P+ Y+ TPL WA+ + DAV+ LVE DC A
Sbjct: 1338958 PNAPDNYSRTPLDWAIFSNNLDAVKLLVEAVGDCNA 1338851
>ref|XM_778837.2| PREDICTED: Strongylocentrotus purpuratus similar to ankyrin
2,3/unc44 (LOC578679), partial mRNA
Length = 2321
Score = 37.7 bits (86), Expect = 1.3, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 21/35 (60%)
Frame = +1
Query: 127 KRSRYAGTPLHWAVLARAHDAVRFLVEHGADCTAG 161
KRSR PLH+A + HD V++L+ GAD G
Sbjct: 196 KRSRSGNAPLHYASRSGHHDVVQYLIGQGADINIG 300
>ref|XM_001204018.1| PREDICTED: Strongylocentrotus purpuratus similar to ankyrin
2,3/unc44 (LOC578679), partial mRNA
Length = 2321
Score = 37.7 bits (86), Expect = 1.3, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 21/35 (60%)
Frame = +1
Query: 127 KRSRYAGTPLHWAVLARAHDAVRFLVEHGADCTAG 161
KRSR PLH+A + HD V++L+ GAD G
Sbjct: 196 KRSRSGNAPLHYASRSGHHDVVQYLIGQGADINIG 300
>ref|XM_001189745.1| PREDICTED: Strongylocentrotus purpuratus similar to NAD(+)
ADP-ribosyltransferase-3-like protein (LOC588883), mRNA
Length = 8663
Score = 37.0 bits (84), Expect = 2.0, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Frame = +3
Query: 127 KRSRYAGTPLHWAVLARAHDAVRFLVEHGADCTAGLKA 164
+R+ + TPLH+A +DAVR L++HGA+ A L A
Sbjct: 1791 RRNTFGQTPLHYAAEKGHNDAVRALLKHGANLQAPLSA 1904
>ref|XM_788547.2| PREDICTED: Strongylocentrotus purpuratus similar to NAD(+)
ADP-ribosyltransferase-3-like protein (LOC588883), mRNA
Length = 8663
Score = 37.0 bits (84), Expect = 2.0, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Frame = +3
Query: 127 KRSRYAGTPLHWAVLARAHDAVRFLVEHGADCTAGLKA 164
+R+ + TPLH+A +DAVR L++HGA+ A L A
Sbjct: 1791 RRNTFGQTPLHYAAEKGHNDAVRALLKHGANLQAPLSA 1904
>ref|XM_676982.1| Aspergillus nidulans FGSC A4 hypothetical protein AN8805.2 partial
mRNA
Length = 678
Score = 37.0 bits (84), Expect = 2.0, Method: Composition-based stats.
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Frame = +1
Query: 120 QVRWQPSKRSRYAGTPLHWAVLARAHDAVRFLVEHGADCT----AGLKAV 165
+V+ + R+ TPLHWA L + V+ LVE GAD + AGL AV
Sbjct: 286 EVKNTVNHRNHSGNTPLHWAALNTHLECVKVLVEAGADISIKNEAGLDAV 435
>ref|XM_001189014.1| PREDICTED: Strongylocentrotus purpuratus similar to conserved
hypothetical protein (LOC581491), mRNA
Length = 3512
Score = 37.0 bits (84), Expect = 2.1, Method: Composition-based stats.
Identities = 14/24 (58%), Positives = 18/24 (75%)
Frame = +1
Query: 134 TPLHWAVLARAHDAVRFLVEHGAD 157
TP+HWAV+ HD + LV+HGAD
Sbjct: 1087 TPIHWAVVCGVHDLIDTLVDHGAD 1158
>ref|XM_781484.2| PREDICTED: Strongylocentrotus purpuratus similar to conserved
hypothetical protein (LOC581491), mRNA
Length = 3512
Score = 37.0 bits (84), Expect = 2.1, Method: Composition-based stats.
Identities = 14/24 (58%), Positives = 18/24 (75%)
Frame = +1
Query: 134 TPLHWAVLARAHDAVRFLVEHGAD 157
TP+HWAV+ HD + LV+HGAD
Sbjct: 1087 TPIHWAVVCGVHDLIDTLVDHGAD 1158
>ref|XM_001315095.1| Trichomonas vaginalis G3 ankyrin repeat protein, putative
(TVAG_169090) partial mRNA
Length = 1125
Score = 37.0 bits (84), Expect = 2.1, Method: Composition-based stats.
Identities = 14/27 (51%), Positives = 20/27 (74%)
Frame = +1
Query: 134 TPLHWAVLARAHDAVRFLVEHGADCTA 160
TPLH+AV ++ + V+FL+ HGAD A
Sbjct: 451 TPLHYAVKTKSKETVQFLISHGADINA 531
>ref|XM_001323853.1| Trichomonas vaginalis G3 ankyrin repeat protein, putative
(TVAG_158920) partial mRNA
Length = 852
Score = 36.6 bits (83), Expect = 2.5, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 26/47 (55%)
Frame = +1
Query: 114 ESSVSLQVRWQPSKRSRYAGTPLHWAVLARAHDAVRFLVEHGADCTA 160
+SS + VR + + Y TPLH+AVL + + L+ HGAD A
Sbjct: 145 KSSEQIIVRDEEGEELDYGMTPLHYAVLTKNYLIFNLLISHGADVNA 285
>ref|XM_001214336.1| Aspergillus terreus NIH2624 conserved hypothetical protein
(ATEG_05158) partial mRNA
Length = 2865
Score = 36.6 bits (83), Expect = 2.8, Method: Composition-based stats.
Identities = 16/27 (59%), Positives = 18/27 (66%)
Frame = +1
Query: 134 TPLHWAVLARAHDAVRFLVEHGADCTA 160
TPLHWAV D +FL+EHGAD A
Sbjct: 2155 TPLHWAVQTINEDLFKFLLEHGADMYA 2235
>ref|XM_001309943.1| Trichomonas vaginalis G3 hypothetical protein (TVAG_315160) partial
mRNA
Length = 2907
Score = 36.2 bits (82), Expect = 3.2, Method: Composition-based stats.
Identities = 14/26 (53%), Positives = 20/26 (76%)
Frame = +1
Query: 135 PLHWAVLARAHDAVRFLVEHGADCTA 160
PLH+AVL +++D + FL+ HGAD A
Sbjct: 1267 PLHFAVLHQSNDTLEFLITHGADINA 1344
>gb|EZ043707.1| TSA: Acropora millepora SeqIndex8756, mRNA sequence
Length = 796
Score = 36.2 bits (82), Expect = 3.4, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 26/35 (74%), Gaps = 1/35 (2%)
Frame = +1
Query: 126 SKRSRYAG-TPLHWAVLARAHDAVRFLVEHGADCT 159
++R+ ++G TPLH+A L+ +H+ VR L+ GAD T
Sbjct: 238 NQRANFSGFTPLHYAALSDSHECVRRLIXAGADPT 342
>ref|XM_001259731.1| Neosartorya fischeri NRRL 181 ankyrin repeat protein (Yar1),
putative (NFIA_077750) partial mRNA
Length = 675
Score = 36.2 bits (82), Expect = 3.7, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Frame = +1
Query: 106 ASGAAEHSESSVSLQVRWQPSKRSRYAGTPLHWAVLARAHDAVRFLVEHGADC----TAG 161
AS A+ + + Q+ + R+ TPLHWA L D V+ LVE GAD AG
Sbjct: 250 ASLTAQSTAPLSAEQIAAVVNHRNHSGNTPLHWAALNTHLDCVKALVEAGADIGVKNDAG 429
Query: 162 LKAV 165
L A+
Sbjct: 430 LDAI 441
>ref|XM_812554.1| Trypanosoma cruzi strain CL Brener hypothetical protein partial
mRNA
Length = 2406
Score = 35.4 bits (80), Expect = 6.1, Method: Composition-based stats.
Identities = 14/24 (58%), Positives = 17/24 (70%)
Frame = +1
Query: 134 TPLHWAVLARAHDAVRFLVEHGAD 157
T LHWAV +D RFL++HGAD
Sbjct: 394 TALHWAVTGVQYDMTRFLLDHGAD 465
>ref|XM_001956091.1| Drosophila ananassae GF25050 (Dana\GF25050), mRNA
Length = 1740
Score = 35.4 bits (80), Expect = 6.3, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 24/44 (54%)
Frame = +1
Query: 116 SVSLQVRWQPSKRSRYAGTPLHWAVLARAHDAVRFLVEHGADCT 159
S+ L ++ + R TPLHWAV R VR L++H AD T
Sbjct: 409 SLLLALKCSVNPRDMLRMTPLHWAVEKRHKSIVRMLLKHHADVT 540
>ref|XM_001274097.1| Aspergillus clavatus NRRL 1 ankyrin repeat protein (Yar1), putative
(ACLA_010990), partial mRNA
Length = 717
Score = 35.4 bits (80), Expect = 6.4, Method: Composition-based stats.
Identities = 25/58 (43%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Frame = +1
Query: 113 SESSVSL-QVRWQPSKRSRYAGTPLHWAVLARAHDAVRFLVEHGADCT----AGLKAV 165
SES +S Q+ + R+ TPLHWA L + V+ LVE GAD + AGL AV
Sbjct: 262 SESPLSAAQIVAVVNHRNHSGNTPLHWAALNTHLECVKALVEAGADISIKNDAGLDAV 435
>gb|CP000505.1| Thermofilum pendens Hrk 5, complete genome
Length = 1781889
Score = 34.7 bits (78), Expect = 9.7, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = -3
Query: 128 RSRYAGTPLHWAVLARAHDAVRFLVEHGADCTA 160
+ Y TPLHWA + V L+EHGAD A
Sbjct: 1223929 KDEYGRTPLHWAAERGCPEVVELLLEHGADPNA 1223831
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.323 0.132 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 455799606
Number of extensions: 7481709
Number of successful extensions: 63779
Number of sequences better than 10: 20
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 63752
Number of HSP's successfully gapped: 20
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 16 (7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.0 bits)
S2: 78 (34.7 bits)
Query= gi|154332242|ref|NC_009298.1|:subseq(81430,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 5
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
ref|XM_001561789.1| Leishmania braziliensis MHOM/BR/75/M2904 hyp... 142 3e-32
emb|AM494942.1| Leishmania braziliensis chromosome 5 142 3e-32
ref|XM_001687450.1| Leishmania major strain Friedlin hypothetica... 75 6e-12
ref|XM_001462949.1| Leishmania infantum hypothetical protein, co... 70 2e-10
emb|AM502223.1| Leishmania infantum chromosome 5 70 2e-10
emb|AM494944.1| Leishmania braziliensis chromosome 7 68 1e-09
ref|XM_001562498.1| Leishmania braziliensis MHOM/BR/75/M2904 hyp... 57 1e-06
>ref|XM_001561789.1| Leishmania braziliensis MHOM/BR/75/M2904 hypothetical protein,
conserved (LbrM05_V2.0250) partial mRNA
Length = 954
Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats.
Identities = 118/166 (71%), Positives = 118/166 (71%)
Frame = +2
Query: 1 TVSMNXXXXXXXXXXXXXXXXGAQTRTTKTTMPRYSTKMLXXXXXXXXXXNSATSYSTNA 60
TVSMN GAQTRTTKTTMPRYSTKML NSATSYSTNA
Sbjct: 77 TVSMNRPTAVPPRTARTPVRRGAQTRTTKTTMPRYSTKMLRRRQRQIGRRNSATSYSTNA 256
Query: 61 CXPTSCTVAALPSTFSSTGCCAUAQHRRWTUPCTXXXXXXXXXXXXXXXXXIQRAPCLYK 120
C PTSCTVAALPSTFSSTGCCA AQHRRWT PCT IQRAPCLYK
Sbjct: 257 C*PTSCTVAALPSTFSSTGCCA*AQHRRWT*PCTVSSSRVVRCRLLVALRSIQRAPCLYK 436
Query: 121 CGGSRVSGVATLVHLSTGPSSPARMTLCAFSXSTALIALQDURQSR 166
CGGSRVSGVATLVHLSTGPSSPARMTLCAFS STALIALQD RQSR
Sbjct: 437 CGGSRVSGVATLVHLSTGPSSPARMTLCAFS*STALIALQD*RQSR 574
>emb|AM494942.1| Leishmania braziliensis chromosome 5
Length = 459355
Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats.
Identities = 118/166 (71%), Positives = 118/166 (71%)
Frame = +1
Query: 1 TVSMNXXXXXXXXXXXXXXXXGAQTRTTKTTMPRYSTKMLXXXXXXXXXXNSATSYSTNA 60
TVSMN GAQTRTTKTTMPRYSTKML NSATSYSTNA
Sbjct: 81433 TVSMNRPTAVPPRTARTPVRRGAQTRTTKTTMPRYSTKMLRRRQRQIGRRNSATSYSTNA 81612
Query: 61 CXPTSCTVAALPSTFSSTGCCAUAQHRRWTUPCTXXXXXXXXXXXXXXXXXIQRAPCLYK 120
C PTSCTVAALPSTFSSTGCCA AQHRRWT PCT IQRAPCLYK
Sbjct: 81613 C*PTSCTVAALPSTFSSTGCCA*AQHRRWT*PCTVSSSRVVRCRLLVALRSIQRAPCLYK 81792
Query: 121 CGGSRVSGVATLVHLSTGPSSPARMTLCAFSXSTALIALQDURQSR 166
CGGSRVSGVATLVHLSTGPSSPARMTLCAFS STALIALQD RQSR
Sbjct: 81793 CGGSRVSGVATLVHLSTGPSSPARMTLCAFS*STALIALQD*RQSR 81930
>ref|XM_001687450.1| Leishmania major strain Friedlin hypothetical protein, conserved
(LmjF05.0260) partial mRNA
Length = 1182
Score = 75.1 bits (183), Expect = 6e-12, Method: Composition-based stats.
Identities = 79/167 (47%), Positives = 85/167 (50%), Gaps = 1/167 (0%)
Frame = +2
Query: 1 TVSMNXXXXXXXXXXXXXXXXGAQTRTTKTTMPRYSTKMLXXXXXXXXXXNSATSYSTNA 60
TVS+ A+ T KT MPRY T+ N TS ST+
Sbjct: 290 TVSIGKPSAAPPRTARPPVARRARMHTHKTIMPRYLTRKSRRRRRKIGRRNRETSSSTSV 469
Query: 61 CXPTSCTVAALPSTFSSTGCCAUAQHRRWTUPCTXXXXXXXXXXXXXXXXXIQ-RAPCLY 119
C PT+CT A PSTFSSTGC A AQ RRWT PCT Q RA CL
Sbjct: 470 CLPTNCTATASPSTFSSTGCFA*AQRRRWT*PCTVFSSPVARCRRLLVVQRCQRRAQCLC 649
Query: 120 KCGGSRVSGVATLVHLSTGPSSPARMTLCAFSXSTALIALQDURQSR 166
KC GSR S ATLVHLSTG S P R T CA S STAL AL+ RQSR
Sbjct: 650 KCVGSRASAAATLVHLSTGLSLPTRTTRCASS*STALTALRG*RQSR 790
>ref|XM_001462949.1| Leishmania infantum hypothetical protein, conserved (LinJ05.0230)
partial mRNA
Length = 1161
Score = 70.1 bits (170), Expect = 2e-10, Method: Composition-based stats.
Identities = 79/145 (54%), Positives = 84/145 (57%), Gaps = 1/145 (0%)
Frame = +2
Query: 23 AQTRTTKTTMPRYSTKMLXXXXXXXXXXNSATSYSTNACXPTSCTVAALPSTFSSTGCCA 82
A+ T KT MPRYST+ N ATS ST+ C PT+CT A PSTFSSTGC A
Sbjct: 338 ARVHTCKTMMPRYSTRRPRRRRRWIGGRNRATSSSTSVCLPTNCTETASPSTFSSTGCFA 517
Query: 83 UAQHRRWTUPCTXXXXXXXXXXXXXXXXXIQ-RAPCLYKCGGSRVSGVATLVHLSTGPSS 141
AQ RRWT PCT Q RA CL KC GSR S ATLVHLSTG S
Sbjct: 518 *AQRRRWT*PCTVFSSRVARCRRLLLVQRCQRRAQCLCKCVGSRASAAATLVHLSTGLSL 697
Query: 142 PARMTLCAFSXSTALIALQDURQSR 166
PAR T CA S STAL A+Q RQSR
Sbjct: 698 PARTTRCASSWSTALTAVQG*RQSR 772
>emb|AM502223.1| Leishmania infantum chromosome 5
Length = 455874
Score = 70.1 bits (170), Expect = 2e-10, Method: Composition-based stats.
Identities = 79/145 (54%), Positives = 84/145 (57%), Gaps = 1/145 (0%)
Frame = +2
Query: 23 AQTRTTKTTMPRYSTKMLXXXXXXXXXXNSATSYSTNACXPTSCTVAALPSTFSSTGCCA 82
A+ T KT MPRYST+ N ATS ST+ C PT+CT A PSTFSSTGC A
Sbjct: 70118 ARVHTCKTMMPRYSTRRPRRRRRWIGGRNRATSSSTSVCLPTNCTETASPSTFSSTGCFA 70297
Query: 83 UAQHRRWTUPCTXXXXXXXXXXXXXXXXXIQ-RAPCLYKCGGSRVSGVATLVHLSTGPSS 141
AQ RRWT PCT Q RA CL KC GSR S ATLVHLSTG S
Sbjct: 70298 *AQRRRWT*PCTVFSSRVARCRRLLLVQRCQRRAQCLCKCVGSRASAAATLVHLSTGLSL 70477
Query: 142 PARMTLCAFSXSTALIALQDURQSR 166
PAR T CA S STAL A+Q RQSR
Sbjct: 70478 PARTTRCASSWSTALTAVQG*RQSR 70552
>emb|AM494944.1| Leishmania braziliensis chromosome 7
Length = 586128
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 53/80 (66%), Positives = 53/80 (66%)
Frame = -2
Query: 1 TVSMNXXXXXXXXXXXXXXXXGAQTRTTKTTMPRYSTKMLXXXXXXXXXXNSATSYSTNA 60
TVSMN GAQTRTTKTTMPRYSTKML NSATSYSTNA
Sbjct: 225677 TVSMNRPTAVPPRTARTPVRRGAQTRTTKTTMPRYSTKMLRRRQRQIGRRNSATSYSTNA 225498
Query: 61 CXPTSCTVAALPSTFSSTGC 80
C PTSCTVAALPSTFSSTGC
Sbjct: 225497 C*PTSCTVAALPSTFSSTGC 225438
>ref|XM_001562498.1| Leishmania braziliensis MHOM/BR/75/M2904 hypothetical protein,
conserved (LbrM07_V2.0520) mRNA, partial cds
Length = 318
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 53/80 (66%), Positives = 53/80 (66%)
Frame = +2
Query: 1 TVSMNXXXXXXXXXXXXXXXXGAQTRTTKTTMPRYSTKMLXXXXXXXXXXNSATSYSTNA 60
TVSMN GAQTRTTKTTMPRYSTKML NSATSYSTNA
Sbjct: 77 TVSMNRPTAVPPRTARTPVRRGAQTRTTKTTMPRYSTKMLRRRQRQIGRRNSATSYSTNA 256
Query: 61 CXPTSCTVAALPSTFSSTGC 80
C PTSCTVAALPSTFSSTGC
Sbjct: 257 C*PTSCTVAALPSTFSSTGC 316
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.328 0.128 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 381539206
Number of extensions: 4490949
Number of successful extensions: 34277
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 34269
Number of HSP's successfully gapped: 0
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 15 (7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.0 bits)
S2: 78 (34.7 bits)
Query= gi|154332242|ref|NC_009298.1|:subseq(84891,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 5
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
emb|AM494942.1| Leishmania braziliensis chromosome 5 293 1e-77
ref|XM_001561791.1| Leishmania braziliensis MHOM/BR/75/M2904 pro... 281 7e-74
ref|XM_001687452.1| Leishmania major strain Friedlin protein tyr... 256 2e-66
emb|AM502223.1| Leishmania infantum chromosome 5 255 4e-66
ref|XM_001462951.1| Leishmania infantum protein tyrosine phospha... 254 5e-66
ref|XM_800294.1| Trypanosoma cruzi strain CL Brener protein tyro... 199 2e-49
ref|XM_818188.1| Trypanosoma brucei TREU927 protein tyrosine pho... 183 2e-44
dbj|AK251796.1| Hordeum vulgare subsp. vulgare cDNA clone: FLbaf... 110 1e-22
ref|NM_001085097.1| Arabidopsis thaliana PAS2 (PASTICCINO 2) (PA... 109 2e-22
gb|EU650783.1| Brassica rapa subsp. pekinensis clone EST-114 PAS... 108 5e-22
ref|XM_001650471.1| Aedes aegypti ptpla domain protein partial mRNA 108 5e-22
ref|XM_002114378.1| Trichoplax adhaerens expressed hypothetical ... 108 5e-22
gb|EU959335.1| Zea mays clone 216404 PAS2 mRNA, complete cds 107 1e-21
ref|XM_002310833.1| Populus trichocarpa predicted protein, mRNA 107 2e-21
gb|EF144571.1| Populus trichocarpa clone WS01111_B04 unknown mRNA 107 2e-21
ref|XM_001650240.1| Aedes aegypti ptpla domain protein partial mRNA 106 2e-21
gb|EU962618.1| Zea mays clone 244263 PAS2 mRNA, complete cds 105 3e-21
gb|AY104955.1| Zea mays PCO113584 mRNA sequence 105 3e-21
emb|AJ506746.1|ATH506746 Arabidopsis thaliana mRNA for PEPINO pr... 105 4e-21
ref|NM_121086.4| Arabidopsis thaliana PAS2 (PASTICCINO 2) (PAS2)... 105 4e-21
emb|CU406329.1| Oryza rufipogon (W1943) cDNA clone: ORW1943C111P... 105 4e-21
ref|NM_001058879.1| Oryza sativa (japonica cultivar-group) Os04g... 105 5e-21
dbj|AK060035.1| Oryza sativa Japonica Group cDNA clone:006-304-A... 105 5e-21
gb|AY065090.1| Arabidopsis thaliana putative protein phosphatase... 105 5e-21
gb|AY047708.1| Arabidopsis thaliana PASTICCINO2 mRNA, complete cds 105 5e-21
dbj|AK060935.1| Oryza sativa Japonica Group cDNA clone:006-201-B... 105 5e-21
gb|BT006269.1| Arabidopsis thaliana At5g10480 mRNA, complete cds 105 6e-21
gb|EF087501.1| Picea sitchensis clone WS02734_I22 unknown mRNA 105 6e-21
dbj|AK248945.1| Hordeum vulgare subsp. vulgare cDNA clone: FLbaf... 105 6e-21
gb|BT043344.1| Zea mays full-length cDNA clone ZM_BFc0166E23 mRN... 105 7e-21
gb|BT039315.1| Zea mays full-length cDNA clone ZM_BFc0005G03 mRN... 105 7e-21
ref|NM_001048567.1| Oryza sativa (japonica cultivar-group) Os01g... 104 7e-21
dbj|AK099465.1| Oryza sativa Japonica Group cDNA clone:J013023K1... 104 8e-21
emb|BX830563.1|CNS0A25M Arabidopsis thaliana Full-length cDNA Co... 104 9e-21
gb|EF173369.1| Aedes aegypti clone BAC 92LO9, complete sequence 103 1e-20
emb|CT830369.1| Oryza sativa (indica cultivar-group) cDNA clone:... 103 1e-20
ref|XM_637041.1| Dictyostelium discoideum AX4 hypothetical prote... 103 2e-20
gb|DQ480551.1| Schistosoma mansoni protein tyrosine phosphatase-... 103 2e-20
ref|XM_001071670.1| PREDICTED: Rattus norvegicus protein tyrosin... 102 3e-20
gb|CP000601.1| Ostreococcus lucimarinus CCE9901 chromosome 21, c... 102 4e-20
gb|CP000593.1| Ostreococcus lucimarinus CCE9901 chromosome 13, c... 102 4e-20
ref|XM_001861437.1| Culex quinquefasciatus ptpla domain protein,... 102 6e-20
ref|XM_001924269.1| PREDICTED: Sus scrofa similar to protein tyr... 100 2e-19
emb|BX035979.1|CNS08ZXB Single read from an extremity of a full-... 99 5e-19
ref|XM_001500147.2| PREDICTED: Equus caballus similar to protein... 98 7e-19
gb|DQ416028.1| Acyrthosiphon pisum hypothetical protein mRNA, co... 98 9e-19
ref|XM_001177525.1| PREDICTED: Strongylocentrotus purpuratus sim... 98 1e-18
ref|XM_791706.2| PREDICTED: Strongylocentrotus purpuratus simila... 98 1e-18
ref|XM_001674370.1| Caenorhabditis briggsae hypothetical protein... 97 2e-18
gb|DQ443235.1| Bombyx mori protein tyrosine phosphatase mRNA, co... 97 2e-18
ref|XM_310375.6| Anopheles gambiae str. PEST AGAP003814-PA (AgaP... 97 2e-18
ref|XM_001422861.1| Ostreococcus lucimarinus CCE9901 predicted p... 97 2e-18
ref|XM_001420960.1| Ostreococcus lucimarinus CCE9901 predicted p... 97 2e-18
ref|XM_213610.4| PREDICTED: Rattus norvegicus protein tyrosine p... 97 2e-18
ref|NM_001126150.2| Acyrthosiphon pisum protein tyrosine phospha... 96 3e-18
gb|BC168480.1| Xenopus tropicalis cDNA clone MGC:172797 IMAGE:76... 96 3e-18
gb|BC112557.1| Bos taurus protein tyrosine phosphatase-like (pro... 96 3e-18
ref|XM_002064547.1| Drosophila willistoni GK23928 (Dwil\GK23928)... 96 3e-18
emb|CU687459.1| Synthetic construct Homo sapiens gateway clone I... 96 3e-18
dbj|AK236113.1| Sus scrofa mRNA, clone:OVRM10153D07, expressed i... 96 3e-18
gb|AY222959.1| Schistosoma japonicum clone ZZZ308 mRNA sequence 96 3e-18
emb|BX035980.1|CNS08ZXC Single read from an extremity of a full-... 96 4e-18
gb|BC027289.1| Mus musculus protein tyrosine phosphatase-like (p... 96 4e-18
ref|XM_001113078.1| PREDICTED: Macaca mulatta similar to protein... 96 4e-18
ref|XM_002052314.1| Drosophila virilis GJ22182 (Dvir\GJ22182), mRNA 96 5e-18
gb|BC078103.1| Xenopus laevis MGC83576 protein, mRNA (cDNA clone... 96 5e-18
ref|XR_054050.1| PREDICTED: Taeniopygia guttata misc_RNA (LOC100... 96 5e-18
ref|XM_001372372.1| PREDICTED: Monodelphis domestica similar to ... 96 6e-18
ref|NM_072339.4| Caenorhabditis elegans hypothetical protein (T1... 95 6e-18
emb|AJ720797.1| Gallus gallus mRNA for hypothetical protein, clo... 95 6e-18
ref|XM_001757939.1| Physcomitrella patens subsp. patens predicte... 95 8e-18
ref|XM_001603034.1| PREDICTED: Nasonia vitripennis similar to GA... 95 8e-18
gb|BC077839.1| Xenopus laevis protein tyrosine phosphatase-like ... 95 9e-18
dbj|AK018144.1| Mus musculus adult male medulla oblongata cDNA, ... 95 9e-18
ref|NM_023587.2| Mus musculus protein tyrosine phosphatase-like ... 95 9e-18
gb|BC165084.1| Danio rerio protein tyrosine phosphatase-like (pr... 94 1e-17
gb|BC131901.1| Mus musculus protein tyrosine phosphatase-like (p... 94 1e-17
gb|BC131899.1| Mus musculus protein tyrosine phosphatase-like (p... 94 1e-17
ref|XM_002131002.1| PREDICTED: Ciona intestinalis similar to pro... 94 1e-17
gb|FJ638634.1| Synthetic construct Drosophila melanogaster clone... 94 1e-17
gb|BC093477.1| Xenopus laevis cDNA clone MGC:98540 IMAGE:7199090... 94 1e-17
emb|CT837241.1| Oryza sativa (indica cultivar-group) cDNA clone:... 94 1e-17
emb|CR858641.1| Pongo abelii mRNA; cDNA DKFZp469O0115 (from clon... 94 1e-17
emb|CU687458.1| Synthetic construct Homo sapiens gateway clone I... 94 1e-17
dbj|AK289983.1| Homo sapiens cDNA FLJ77861 complete cds 94 2e-17
ref|XM_001168034.1| PREDICTED: Pan troglodytes similar to Protei... 94 2e-17
gb|AY191814.1| Homo sapiens protein tyrosine phosphatase-like me... 94 2e-17
dbj|AK125375.1| Homo sapiens cDNA FLJ43385 fis, clone OCBBF20061... 94 2e-17
gb|BC060839.1| Homo sapiens protein tyrosine phosphatase-like (p... 94 2e-17
gb|BC049369.1| Homo sapiens protein tyrosine phosphatase-like (p... 94 2e-17
gb|BC044396.1| Danio rerio protein tyrosine phosphatase-like (pr... 94 2e-17
dbj|AK148143.1| Mus musculus B16 F10Y cells cDNA, RIKEN full-len... 93 2e-17
ref|XM_845875.1| PREDICTED: Canis familiaris similar to protein ... 93 2e-17
ref|XM_001650239.1| Aedes aegypti ptpla domain protein partial mRNA 93 3e-17
ref|NM_001048569.1| Oryza sativa (japonica cultivar-group) Os01g... 93 3e-17
ref|XM_962730.1| PREDICTED: Tribolium castaneum similar to ptpla... 93 3e-17
emb|CR858033.1| Pongo abelii mRNA; cDNA DKFZp459B2333 (from clon... 93 4e-17
ref|XM_001650472.1| Aedes aegypti ptpla domain protein partial mRNA 92 4e-17
gb|BT050020.1| Salmo salar clone ssal-plnb-029-159 PHS1 putative... 92 4e-17
gb|FJ635220.1| Synthetic construct Drosophila melanogaster clone... 92 5e-17
ref|XM_001962470.1| Drosophila ananassae GF15500 (Dana\GF15500),... 92 6e-17
dbj|AK237989.1| Sus scrofa mRNA, clone:TCH010025F09, expressed i... 92 6e-17
ref|XM_002079135.1| Drosophila simulans GD22144 (Dsim\GD22144), ... 92 7e-17
ref|XM_002041968.1| Drosophila sechellia GM26451 (Dsec\GM26451),... 92 7e-17
ref|XM_002002040.1| Drosophila mojavensis GI17184 (Dmoj\GI17184)... 92 7e-17
ref|XM_001993350.1| Drosophila grimshawi GH13780 (Dgri\GH13780),... 92 7e-17
gb|AE014134.5| Drosophila melanogaster chromosome 2L, complete s... 91 1e-16
ref|NM_135690.2| Drosophila melanogaster CG6746 (CG6746), mRNA 91 1e-16
gb|AC011065.6| Drosophila melanogaster, chromosome 2L, region 33... 91 1e-16
gb|AY069058.1| Drosophila melanogaster GH07085 full insert cDNA 91 1e-16
ref|NM_001048570.1| Oryza sativa (japonica cultivar-group) Os01g... 91 1e-16
dbj|AK072612.1| Oryza sativa Japonica Group cDNA clone:J023134L0... 91 1e-16
ref|XM_001750971.1| Monosiga brevicollis MX1 predicted protein M... 91 1e-16
ref|XM_002088388.1| Drosophila yakuba GE12555 (Dyak\GE12555), mRNA 90 2e-16
ref|XM_002224681.1| Branchiostoma floridae hypothetical protein ... 90 2e-16
ref|XM_001969749.1| Drosophila erecta GG10286 (Dere\GG10286), mRNA 89 3e-16
ref|XM_310376.5| Anopheles gambiae str. PEST AGAP003815-PA (AgaP... 89 4e-16
emb|BX063128.1|CNS09KVG Single read from an extremity of a full-... 89 4e-16
gb|CP000585.1| Ostreococcus lucimarinus CCE9901 chromosome 5, co... 89 4e-16
emb|CR386940.1| Gallus gallus finished cDNA, clone ChEST164a18 89 4e-16
emb|CR386138.1| Gallus gallus finished cDNA, clone ChEST362b6 89 5e-16
ref|XM_418620.2| PREDICTED: Gallus gallus similar to putative ty... 89 6e-16
ref|XM_002207237.1| Branchiostoma floridae hypothetical protein ... 89 6e-16
ref|XM_001936062.1| Pyrenophora tritici-repentis Pt-1C-BFP prote... 89 6e-16
ref|XM_001073002.1| PREDICTED: Rattus norvegicus similar to prot... 89 7e-16
ref|XM_001357053.2| Drosophila pseudoobscura pseudoobscura GA198... 89 7e-16
ref|XM_002020822.1| Drosophila persimilis GL14177 (Dper\GL14177)... 89 7e-16
gb|AF114493.1|AF114493 Mus musculus putative tyrosine phosphatas... 88 9e-16
gb|BC141017.1| Mus musculus protein tyrosine phosphatase-like (p... 88 1e-15
gb|BC138116.1| Mus musculus protein tyrosine phosphatase-like (p... 88 1e-15
ref|NM_013935.3| Mus musculus protein tyrosine phosphatase-like ... 88 1e-15
ref|XM_751061.1| Ustilago maydis 521 hypothetical protein (UM000... 88 1e-15
gb|AF162707.1|AF162707 Ovis aries protein tyrosine phosphatase-l... 88 1e-15
ref|XR_024193.1| PREDICTED: Pan troglodytes hypothetical LOC4503... 88 1e-15
emb|AM260199.1| Rattus norvegicus mRNA for protein tyrosine phos... 88 1e-15
gb|AY610166.1| Sus scrofa clone Clu_8309.scr.msk.p1.Contig3, mRN... 88 1e-15
dbj|AK010119.1| Mus musculus adult male tongue cDNA, RIKEN full-... 87 1e-15
emb|BX063127.1|CNS09KVF Single read from an extremity of a full-... 87 2e-15
ref|XM_001091308.1| PREDICTED: Macaca mulatta similar to protein... 87 2e-15
gb|AF114494.1|AF114494 Homo sapiens putative tyrosine phosphatas... 87 2e-15
ref|XM_001519766.1| PREDICTED: Ornithorhynchus anatinus hypothet... 87 2e-15
emb|AJ876904.1| Canis familiaris mRNA for protein tyrosine phosp... 87 2e-15
ref|XM_866930.2| PREDICTED: Bos taurus similar to protein tyrosi... 87 2e-15
emb|BX045201.1|CNS0971H Single read from an extremity of a full-... 87 2e-15
ref|XM_001418031.1| Ostreococcus lucimarinus CCE9901 predicted p... 86 3e-15
ref|XM_001747419.1| Monosiga brevicollis MX1 predicted protein M... 86 3e-15
ref|XM_001484478.1| Pichia guilliermondii ATCC 6260 hypothetical... 86 3e-15
ref|XM_694691.3| PREDICTED: Danio rerio hypothetical protein LOC... 86 4e-15
ref|XM_649162.2| Entamoeba histolytica HM-1:IMSS protein tyrosin... 86 4e-15
gb|BC010353.1| Homo sapiens protein tyrosine phosphatase-like (p... 86 4e-15
ref|XM_001622638.1| Nematostella vectensis predicted protein (NE... 86 4e-15
ref|NM_014241.3| Homo sapiens protein tyrosine phosphatase-like ... 86 4e-15
emb|CR608689.1| full-length cDNA clone CS0DC020YD04 of Neuroblas... 86 4e-15
ref|XM_001734739.1| Entamoeba dispar SAW760 ptpla domain protein... 86 4e-15
emb|AL832532.1|HSM803841 Homo sapiens mRNA; cDNA DKFZp547H0216 (... 86 5e-15
ref|XM_002172514.1| Schizosaccharomyces japonicus yFS275 protein... 86 5e-15
ref|XM_001377282.1| PREDICTED: Monodelphis domestica similar to ... 86 5e-15
ref|XM_002192754.1| PREDICTED: Taeniopygia guttata similar to pu... 86 5e-15
ref|NM_001021597.1| Schizosaccharomyces pombe phosphoprotein pho... 85 7e-15
ref|XM_001067746.1| PREDICTED: Rattus norvegicus similar to prot... 85 9e-15
ref|XM_001861436.1| Culex quinquefasciatus ptpla domain protein,... 85 9e-15
emb|BX045200.1|CNS0971G Single read from an extremity of a full-... 84 1e-14
gb|BC090424.1| Danio rerio hypothetical protein LOC553326, mRNA ... 84 1e-14
ref|XM_001067857.1| PREDICTED: Rattus norvegicus similar to prot... 84 1e-14
emb|CR382132.1| Yarrowia lipolytica strain CLIB122 chromosome F ... 84 1e-14
ref|XM_001820227.1| Aspergillus oryzae RIB40 hypothetical protei... 84 1e-14
ref|XM_001357286.2| Drosophila pseudoobscura pseudoobscura GA216... 84 2e-14
ref|XM_002018867.1| Drosophila persimilis GL25700 (Dper\GL25700)... 84 2e-14
ref|XM_505309.1| Yarrowia lipolytica YALI0F11935p (YALI0F11935g)... 84 2e-14
ref|XM_001498261.1| PREDICTED: Equus caballus similar to protein... 83 2e-14
dbj|AK074605.1| Homo sapiens cDNA FLJ90124 fis, clone HEMBA10072... 83 3e-14
gb|EU413006.1| TSA: Hippoglossus hippoglossus all_halibut.2012.C... 82 6e-14
gb|EZ010398.1| TSA: Acropora millepora SeqIndex11407, mRNA sequence 82 6e-14
ref|XM_001806059.1| Phaeosphaeria nodorum SN15 hypothetical pro... 82 7e-14
gb|BC082913.1| Xenopus laevis hypothetical LOC494792, mRNA (cDNA... 81 9e-14
gb|BC158448.1| Xenopus tropicalis hypothetical protein LOC100145... 81 9e-14
gb|AF169286.1|AF169286 Mus musculus protein tyrosine phosphatase... 81 1e-13
ref|XM_001830484.1| Coprinopsis cinerea okayama7#130 hypothetica... 81 1e-13
ref|NM_001048568.1| Oryza sativa (japonica cultivar-group) Os01g... 81 1e-13
dbj|AP006500.2| Cyanidioschyzon merolae DNA, chromosome 18, comp... 81 1e-13
gb|EZ015849.1| TSA: Acropora millepora SeqIndex2053, mRNA sequence 80 2e-13
ref|XM_458450.1| Debaryomyces hansenii CBS767 hypothetical prote... 80 2e-13
gb|AY232134.1| Drosophila yakuba clone yak-ad_CG6746 mRNA sequence 80 2e-13
dbj|AP006852.1| Candida albicans genomic DNA, chromosome 7, comp... 80 2e-13
emb|AJ250310.1|CAL250310 Candida albicans cyr1 gene (partial), c... 80 2e-13
ref|XM_711818.1| Candida albicans SC5314 potential protein tyros... 80 2e-13
ref|XM_883820.1| Candida albicans hypothetical protein (CaJ7_034... 80 2e-13
ref|XM_711885.1| Candida albicans SC5314 potential protein tyros... 80 2e-13
emb|CR382135.2| Debaryomyces hansenii strain CBS767 chromosome C... 79 3e-13
ref|XM_001908071.1| Podospora anserina DSM 980 hypothetical prot... 79 4e-13
gb|AC084677.1|CBRG47L22 Caenorhabditis briggsae cosmid G47L22, c... 71 5e-13
ref|XM_002042145.1| Drosophila sechellia GM25510 (Dsec\GM25510),... 79 6e-13
emb|FM992694.1| Candida dubliniensis CD36 chromosome 7, complete... 78 8e-13
ref|XM_953920.1| Neurospora crassa OR74A hypothetical protein pa... 78 9e-13
emb|BX050674.1|CNS09B9I Single read from an extremity of a full-... 57 9e-13
ref|XM_001600000.1| PREDICTED: Nasonia vitripennis similar to GA... 78 1e-12
ref|XM_002065072.1| Drosophila willistoni GK15278 (Dwil\GK15278)... 78 1e-12
ref|XM_002088567.1| Drosophila yakuba GE11580 (Dyak\GE11580), mRNA 77 2e-12
ref|XM_002079308.1| Drosophila simulans GD22057 (Dsim\GD22057), ... 77 2e-12
gb|AY071533.1| Drosophila melanogaster RE57556 full length cDNA 77 2e-12
ref|XM_002057393.1| Drosophila virilis GJ18122 (Dvir\GJ18122), mRNA 77 2e-12
emb|CU633900.1| Podospora anserina genomic DNA chromosome 7, sup... 77 2e-12
gb|AY389664.1| Hyacinthus orientalis protein tyrosine phosphatas... 77 2e-12
gb|BT044571.1| Drosophila melanogaster FI03286 full insert cDNA 77 2e-12
ref|NM_135811.2| Drosophila melanogaster CG9267 (CG9267), mRNA 77 2e-12
ref|XM_001969580.1| Drosophila erecta GG10197 (Dere\GG10197), mRNA 76 3e-12
gb|CP000497.1| Pichia stipitis CBS 6054 chromosome 3, complete s... 76 3e-12
ref|XM_001897878.1| Brugia malayi Protein tyrosine phosphatase-l... 76 3e-12
ref|XM_001965009.1| Drosophila ananassae GF21639 (Dana\GF21639),... 76 3e-12
ref|XM_001988275.1| Drosophila grimshawi GH11094 (Dgri\GH11094),... 76 4e-12
ref|XM_359805.1| Magnaporthe grisea 70-15 hypothetical protein (... 75 5e-12
gb|AF022985.2| Caenorhabditis elegans cosmid T15B7, complete seq... 54 6e-12
ref|XM_570797.1| Cryptococcus neoformans var. neoformans JEC21 h... 75 7e-12
ref|XM_770256.1| Cryptococcus neoformans var. neoformans B-3501A... 75 7e-12
ref|XM_455715.1| Kluyveromyces lactis NRRL Y-1140, KLLA0F14146g ... 75 8e-12
emb|CR352863.1| Gallus gallus finished cDNA, clone ChEST493n16 75 8e-12
ref|XM_002214989.1| Branchiostoma floridae hypothetical protein ... 75 8e-12
ref|XM_387480.1| Gibberella zeae PH-1 hypothetical protein parti... 75 9e-12
emb|CR382126.1| Kluyveromyces lactis strain NRRL Y-1140 chromoso... 75 9e-12
emb|AJ719527.1| Gallus gallus mRNA for hypothetical protein, clo... 75 1e-11
ref|XR_032036.1| PREDICTED: Mus musculus similar to protein tyro... 74 1e-11
ref|XR_032745.1| PREDICTED: Mus musculus similar to protein tyro... 74 1e-11
gb|AC132863.8| Mus musculus chromosome 15, clone RP24-388K7, com... 74 1e-11
ref|XM_001383591.1| Pichia stipitis CBS 6054 hypothetical protei... 74 1e-11
ref|XM_002141580.1| Cryptosporidium muris RN66 hypothetical prot... 74 1e-11
ref|NM_125369.2| Arabidopsis thaliana unknown protein (AT5G59770... 74 2e-11
ref|XM_002298340.1| Populus trichocarpa predicted protein, mRNA 74 2e-11
ref|XM_002249774.1| Branchiostoma floridae hypothetical protein ... 74 2e-11
emb|CR380958.2| Candida glabrata strain CBS138 chromosome L comp... 74 2e-11
ref|XM_448928.1| Candida glabrata CBS138, CAGL0L03564g partial mRNA 74 2e-11
ref|XM_001401992.1| Aspergillus niger CBS 513.88 hypothetical pr... 73 3e-11
ref|XM_001523755.1| Lodderomyces elongisporus NRRL YB-4239 hypot... 73 3e-11
emb|CU329671.1| Schizosaccharomyces pombe chromosome II 65 5e-11
ref|XM_001730412.1| Malassezia globosa CBS 7966 hypothetical pro... 72 5e-11
ref|XM_001553915.1| Botryotinia fuckeliana B05.10 hypothetical p... 72 5e-11
ref|XM_002170561.1| PREDICTED: Hydra magnipapillata similar to p... 72 6e-11
ref|XM_001239446.1| Coccidioides immitis RS hypothetical protein... 72 7e-11
ref|XM_001624460.1| Nematostella vectensis predicted protein (NE... 72 8e-11
ref|XM_002003977.1| Drosophila mojavensis GI18216 (Dmoj\GI18216)... 72 8e-11
dbj|AK119124.1| Arabidopsis thaliana mRNA for unknown protein, c... 72 8e-11
emb|CR847515.10| Zebrafish DNA sequence from clone DKEYP-60A7 in... 54 9e-11
ref|XM_002178950.1| Phaeodactylum tricornutum CCAP 1055/1 predic... 71 1e-10
gb|EF081663.1| Picea sitchensis clone WS02729_F05 unknown mRNA 71 1e-10
gb|BT066270.1| Zea mays full-length cDNA clone ZM_BFc0150N12 mRN... 71 1e-10
ref|XM_001266987.1| Neosartorya fischeri NRRL 181 phosphatase-li... 71 1e-10
ref|XM_746706.2| Aspergillus fumigatus Af293 phosphatase-like pr... 71 1e-10
gb|BT005243.1| Arabidopsis thaliana At5g59770 mRNA, complete cds 71 1e-10
ref|XM_001383590.1| Pichia stipitis CBS 6054 hypothetical protei... 70 2e-10
gb|BC151339.1| Bos taurus protein tyrosine phosphatase-like A do... 70 2e-10
ref|XM_001271901.1| Aspergillus clavatus NRRL 1 phosphatase-like... 70 2e-10
ref|XM_002149200.1| Penicillium marneffei ATCC 18224 phosphatase... 70 2e-10
ref|XM_002198048.1| PREDICTED: Taeniopygia guttata protein tyros... 70 2e-10
ref|XM_964026.1| PREDICTED: Tribolium castaneum similar to GA216... 70 2e-10
ref|XM_001803132.1| Phaeosphaeria nodorum SN15 hypothetical pro... 70 3e-10
emb|CR405973.1| Gallus gallus finished cDNA, clone ChEST1020f24 70 3e-10
emb|BX032345.1|CNS08X4D Single read from an extremity of a full-... 57 3e-10
gb|AE016819.4| Ashbya gossypii (= Eremothecium gossypii) ATCC 10... 70 3e-10
ref|NM_210991.1| Ashbya gossypii ATCC 10895 hypothetical protein... 70 3e-10
emb|CU405836.1| Oryza rufipogon (W1943) cDNA clone: ORW1943C106B... 70 3e-10
emb|BX842293.1|CNS0A1L4 Arabidopsis thaliana Full-length cDNA Co... 70 3e-10
ref|XM_663602.1| Cryptosporidium hominis TU502 hypothetical prot... 69 4e-10
ref|XM_458449.1| Debaryomyces hansenii CBS767 hypothetical prote... 69 4e-10
ref|XM_001595039.1| Sclerotinia sclerotiorum 1980 hypothetical p... 69 4e-10
ref|XM_626783.1| Cryptosporidium parvum Iowa II protein phosphat... 69 4e-10
ref|XM_535518.2| PREDICTED: Canis familiaris similar to butyrate... 68 8e-10
emb|CT830575.1| Oryza sativa (indica cultivar-group) cDNA clone:... 68 9e-10
ref|NM_001062294.1| Oryza sativa (japonica cultivar-group) Os05g... 68 9e-10
dbj|AK058842.1| Oryza sativa Japonica Group cDNA clone:001-004-E... 68 9e-10
ref|XM_002121852.1| PREDICTED: Ciona intestinalis similar to GG1... 68 1e-09
ref|XM_001196941.1| PREDICTED: Strongylocentrotus purpuratus hyp... 68 1e-09
ref|XM_792095.2| PREDICTED: Strongylocentrotus purpuratus hypoth... 68 1e-09
dbj|AK238525.1| Sus scrofa mRNA, clone:TES010053B08, expressed i... 68 1e-09
ref|XM_001484477.1| Pichia guilliermondii ATCC 6260 hypothetical... 67 2e-09
gb|BT028202.1| Gasterosteus aculeatus clone CNB156-G02 mRNA sequ... 67 2e-09
ref|XM_001929134.1| PREDICTED: Sus scrofa similar to protein tyr... 67 2e-09
ref|XM_001497817.1| PREDICTED: Equus caballus similar to protein... 67 2e-09
gb|AE017345.1| Cryptococcus neoformans var. neoformans JEC21 chr... 60 3e-09
gb|BC000194.1| Homo sapiens protein tyrosine phosphatase-like A ... 66 3e-09
gb|BC009056.1| Homo sapiens protein tyrosine phosphatase-like A ... 66 4e-09
dbj|AK225120.1| Homo sapiens mRNA for HSPC121 protein variant, c... 66 4e-09
ref|XM_001523754.1| Lodderomyces elongisporus NRRL YB-4239 hypot... 66 4e-09
dbj|AK074898.1| Homo sapiens cDNA FLJ90417 fis, clone NT2RP30001... 66 4e-09
gb|BC011443.1| Homo sapiens protein tyrosine phosphatase-like A ... 66 4e-09
emb|CR925958.1| Pongo abelii mRNA; cDNA DKFZp459E1920 (from clon... 66 5e-09
ref|NM_016395.2| Homo sapiens protein tyrosine phosphatase-like ... 66 5e-09
gb|BC047685.1| Homo sapiens protein tyrosine phosphatase-like A ... 66 5e-09
emb|CR860471.1| Pongo abelii mRNA; cDNA DKFZp459K151 (from clone... 66 5e-09
gb|BC058912.1| Homo sapiens protein tyrosine phosphatase-like A ... 66 5e-09
ref|XM_001643884.1| Vanderwaltozyma polyspora DSM 70294 hypothet... 66 5e-09
dbj|AK027421.1| Homo sapiens cDNA FLJ14515 fis, clone NT2RM10008... 66 5e-09
dbj|AB170635.1| Macaca fascicularis brain cDNA clone: QmoA-11863... 65 5e-09
ref|XM_001109856.1| PREDICTED: Macaca mulatta similar to butyrat... 65 5e-09
ref|XM_657512.1| Aspergillus nidulans FGSC A4 hypothetical prote... 65 6e-09
ref|XM_001375728.1| PREDICTED: Monodelphis domestica similar to ... 65 6e-09
emb|BX033702.1|CNS08Y62 Single read from an extremity of a full-... 65 6e-09
ref|XM_385056.1| Gibberella zeae PH-1 hypothetical protein parti... 65 7e-09
ref|XM_001263470.1| Neosartorya fischeri NRRL 181 conserved hypo... 65 7e-09
gb|BC035508.1| Homo sapiens protein tyrosine phosphatase-like A ... 65 8e-09
ref|XM_001109766.1| PREDICTED: Macaca mulatta similar to butyrat... 65 8e-09
emb|BX033701.1|CNS08Y61 Single read from an extremity of a full-... 65 8e-09
emb|BX032344.1|CNS08X4C Single read from an extremity of a full-... 65 8e-09
dbj|AK299234.1| Homo sapiens cDNA FLJ54138 complete cds, highly ... 65 1e-08
ref|XM_711819.1| Candida albicans SC5314 potential protein tyros... 65 1e-08
ref|XM_883819.1| Candida albicans hypothetical protein (CaJ7_034... 65 1e-08
ref|XM_711886.1| Candida albicans SC5314 potential protein tyros... 65 1e-08
ref|XM_637256.1| Dictyostelium discoideum AX4 hypothetical prote... 64 1e-08
emb|AJ271091.1|HSA271091 Homo sapiens mRNA for B-ind1 protein (B... 64 1e-08
gb|DQ245562.1| Zea mays clone 17510 mRNA sequence 64 1e-08
ref|NM_021345.2| Mus musculus protein tyrosine phosphatase-like ... 64 1e-08
dbj|AK159494.1| Mus musculus osteoclast-like cell cDNA, RIKEN fu... 64 1e-08
dbj|AK052865.1| Mus musculus 16 days neonate heart cDNA, RIKEN f... 64 1e-08
dbj|AK051735.1| Mus musculus 12 days embryo spinal ganglion cDNA... 64 1e-08
dbj|AK050556.1| Mus musculus adult pancreas islet cells cDNA, RI... 64 1e-08
gb|BC031755.1| Mus musculus protein tyrosine phosphatase-like A ... 64 2e-08
gb|BC057023.1| Mus musculus protein tyrosine phosphatase-like A ... 64 2e-08
ref|XM_001397630.1| Aspergillus niger CBS 513.88 hypothetical pr... 64 2e-08
ref|XM_396529.2| PREDICTED: Apis mellifera similar to CG9267-PA ... 64 2e-08
gb|EU967881.1| Zea mays clone 306802 protein tyrosine phosphatas... 64 2e-08
ref|XM_001213689.1| Aspergillus terreus NIH2624 conserved hypoth... 64 2e-08
ref|XM_001614054.1| Plasmodium vivax SaI-1 tyrosine phosphatase ... 64 2e-08
ref|NM_001106831.1| Rattus norvegicus similar to Butyrate-induce... 64 2e-08
gb|AY809826.1| Schistosoma japonicum SJCHGC04764 protein mRNA, p... 64 2e-08
gb|EU411201.1| TSA: Hippoglossus hippoglossus all_halibut.148.C1... 63 3e-08
gb|BT065171.1| Zea mays full-length cDNA clone ZM_BFb0018D11 mRN... 62 6e-08
ref|XM_002295703.1| Thalassiosira pseudonana CCMP1335 chromosome... 62 7e-08
ref|XM_724950.1| Plasmodium yoelii yoelii str. 17XNL glutaminyl-... 62 7e-08
ref|XM_001818149.1| Aspergillus oryzae RIB40 hypothetical protei... 62 9e-08
ref|XM_001696054.1| Chlamydomonas reinhardtii strain CC-503 cw92... 62 9e-08
emb|X77923.1|SCXBCK1 S.cerevisiae 9.74kb fragment of chromosome ... 61 1e-07
emb|Z49372.1|SCYJL097W S.cerevisiae chromosome X reading frame O... 61 1e-07
gb|AC092218.2| Drosophila melanogaster clone BACR12B06, complete... 61 1e-07
gb|AC006575.1|AC006575 Drosophila melanogaster, chromosome 2L, r... 61 1e-07
ref|XM_001513532.1| PREDICTED: Ornithorhynchus anatinus similar ... 61 1e-07
gb|AY557855.1| Saccharomyces cerevisiae clone FLH003763.01X YJL0... 61 1e-07
dbj|AK074857.1| Homo sapiens cDNA FLJ90376 fis, clone NT2RP20047... 61 1e-07
ref|XM_001772793.1| Physcomitrella patens subsp. patens predicte... 60 2e-07
gb|BC019873.1| Homo sapiens protein tyrosine phosphatase-like A ... 60 2e-07
ref|XM_001706335.1| Giardia lamblia ATCC 50803 Protein tyrosine ... 60 3e-07
ref|XM_001099778.1| PREDICTED: Macaca mulatta similar to CG9267-... 60 3e-07
dbj|AK247627.1| Solanum lycopersicum cDNA, clone: LEFL1070DE11, ... 59 4e-07
emb|CR942343.2| Xenopus tropicalis finished cDNA, clone TGas090l11 59 4e-07
emb|BX025576.1|CNS08RWC Single read from an extremity of a full-... 59 4e-07
ref|XM_002259986.1| Plasmodium knowlesi strain H Protein tyrosin... 59 4e-07
emb|CR594128.1| full-length cDNA clone CS0DI081YP24 of Placenta ... 59 6e-07
emb|BX538052.1|HSM806223 Homo sapiens mRNA; cDNA DKFZp686F01145 ... 59 7e-07
ref|XM_001229553.1| Chaetomium globosum CBS 148.51 hypothetical ... 58 8e-07
gb|AF161470.1|AF161470 Homo sapiens HSPC121 mRNA, complete cds 58 9e-07
gb|BC114215.1| Homo sapiens protein tyrosine phosphatase-like A ... 58 1e-06
emb|CR608542.1| full-length cDNA clone CS0DI084YG16 of Placenta ... 58 1e-06
emb|BX648779.1|HSM808930 Homo sapiens mRNA; cDNA DKFZp686G24132 ... 58 1e-06
gb|BC020155.1| Mus musculus protein tyrosine phosphatase-like A ... 58 1e-06
ref|XM_001495346.2| PREDICTED: Equus caballus similar to protein... 58 1e-06
ref|NM_001010915.3| Homo sapiens protein tyrosine phosphatase-li... 58 1e-06
dbj|AK016968.1| Mus musculus adult male testis cDNA, RIKEN full-... 58 1e-06
dbj|AK017257.1| Mus musculus 6 days neonate head cDNA, RIKEN ful... 58 1e-06
ref|XM_001148626.1| PREDICTED: Pan troglodytes protein tyrosine ... 57 1e-06
ref|XM_848993.1| PREDICTED: Canis familiaris similar to CG9267-P... 57 1e-06
ref|NM_025760.3| Mus musculus protein tyrosine phosphatase-like ... 57 1e-06
dbj|AK050927.1| Mus musculus 9 days embryo whole body cDNA, RIKE... 57 1e-06
dbj|AK048282.1| Mus musculus 16 days embryo head cDNA, RIKEN ful... 57 1e-06
ref|NM_001012396.2| Mus musculus protein tyrosine phosphatase-li... 57 2e-06
dbj|AK235492.1| Sus scrofa mRNA, clone:OVRM10087B09, expressed i... 57 2e-06
dbj|AK004461.1| Mus musculus 18-day embryo whole body cDNA, RIKE... 57 2e-06
dbj|AK076818.1| Mus musculus adult male testis cDNA, RIKEN full-... 57 2e-06
emb|AJ876905.1| Canis familiaris mRNA for protein tyrosine phosp... 57 2e-06
gb|BC055174.1| Danio rerio protein tyrosine phosphatase-like A d... 57 3e-06
gb|BC162443.1| Danio rerio protein tyrosine phosphatase-like A d... 57 3e-06
gb|BC162805.1| Danio rerio protein tyrosine phosphatase-like A d... 57 3e-06
ref|NM_001044984.1| Danio rerio protein tyrosine phosphatase-lik... 57 3e-06
ref|XM_001350012.1| Plasmodium falciparum 3D7 hypothetical prote... 56 3e-06
ref|NM_001068266.1| Oryza sativa (japonica cultivar-group) Os08g... 56 4e-06
dbj|AK068190.1| Oryza sativa Japonica Group cDNA clone:J013134O0... 56 4e-06
gb|EU972499.1| Zea mays clone 382284 mRNA sequence 56 5e-06
ref|XM_673795.1| Plasmodium berghei strain ANKA hypothetical pro... 55 7e-06
dbj|AP007155.1| Aspergillus oryzae RIB40 genomic DNA, SC003 55 8e-06
ref|NM_001108669.1| Rattus norvegicus protein tyrosine phosphata... 55 8e-06
ref|NM_001092490.1| Xenopus laevis MGC82904 protein (MGC82904), ... 55 8e-06
gb|BC073600.1| Xenopus laevis MGC82904 protein, mRNA (cDNA clone... 55 8e-06
emb|CR600449.1| full-length cDNA clone CS0DA001YI14 of Neuroblas... 55 1e-05
ref|XM_001373372.1| PREDICTED: Monodelphis domestica similar to ... 55 1e-05
gb|AC154230.2| Mus musculus BAC clone RP24-156E24 from 16, compl... 54 1e-05
gb|AC171205.1| Mus musculus BAC clone RP23-441H20 from chromosom... 54 1e-05
emb|BX050673.1|CNS09B9H Single read from an extremity of a full-... 54 2e-05
gb|BC120231.1| Bos taurus protein tyrosine phosphatase-like A do... 54 2e-05
emb|AL844560.5| Mouse DNA sequence from clone RP23-334M9 on chro... 54 2e-05
emb|CR376779.18| Zebrafish DNA sequence from clone CH211-236N18 ... 53 3e-05
gb|AC025571.20| Homo sapiens 3 BAC RP11-515C21 (Roswell Park Can... 53 3e-05
emb|AM270365.1| Aspergillus niger contig An16c0130, complete genome 38 3e-05
emb|CR732353.2|CNS0GS12 Tetraodon nigroviridis full-length cDNA 53 3e-05
emb|CR727782.2|CNS0GOI4 Tetraodon nigroviridis full-length cDNA 53 3e-05
emb|CR726382.2|CNS0GNF8 Tetraodon nigroviridis full-length cDNA 53 3e-05
emb|CR680794.2|CNS0FO92 Tetraodon nigroviridis full-length cDNA 53 3e-05
dbj|AK039602.1| Mus musculus adult male spinal cord cDNA, RIKEN ... 53 4e-05
dbj|AK039344.1| Mus musculus adult male spinal cord cDNA, RIKEN ... 53 4e-05
ref|XM_367691.2| Magnaporthe grisea 70-15 hypothetical protein (... 52 5e-05
gb|CP001160.1| Thalassiosira pseudonana CCMP1335 chromosome 7, c... 52 6e-05
ref|XM_002110445.1| Trichoplax adhaerens hypothetical protein, mRNA 52 6e-05
gb|AF266851.1|AF266848S4 Homo sapiens PTPLA (PTPLA) gene, exon 6 52 6e-05
ref|XM_001133298.2| PREDICTED: Homo sapiens hypothetical LOC7324... 52 8e-05
emb|CR731733.2|CNS0GRJU Tetraodon nigroviridis full-length cDNA 52 8e-05
emb|CR731806.2|CNS0GRLV Tetraodon nigroviridis full-length cDNA 52 9e-05
gb|EF445016.1| Homo sapiens protein tyrosine phosphatase-like, m... 52 9e-05
gb|AC069542.7| Homo sapiens chromosome 10 clone RP11-390B4, comp... 52 9e-05
emb|CR728425.2|CNS0GOZZ Tetraodon nigroviridis full-length cDNA 51 1e-04
ref|XM_001158964.1| PREDICTED: Pan troglodytes similar to PTPLAD... 51 1e-04
ref|XM_001544212.1| Ajellomyces capsulatus NAm1 predicted protei... 50 2e-04
emb|CR728861.2|CNS0GPC3 Tetraodon nigroviridis full-length cDNA 50 2e-04
gb|BT056851.1| Salmo salar clone ssal-rgb2-539-143 tyrosine phos... 50 3e-04
ref|NM_065463.1| Caenorhabditis elegans hypothetical protein (R1... 50 3e-04
emb|Z50874.1| Caenorhabditis elegans Cosmid R10E4, complete sequ... 50 4e-04
ref|XM_002190317.1| PREDICTED: Taeniopygia guttata similar to pr... 48 9e-04
emb|AM486190.2| Vitis vinifera contig VV78X000824.7, whole genom... 44 0.001
ref|XM_001440614.1| Paramecium tetraurelia hypothetical protein ... 48 0.001
ref|XM_001666265.1| Caenorhabditis briggsae hypothetical protein... 47 0.002
ref|XM_002219874.1| Branchiostoma floridae hypothetical protein ... 47 0.002
emb|AM920437.1| Penicillium chrysogenum Wisconsin 54-1255 comple... 47 0.003
emb|AM270080.1| Aspergillus niger contig An04c0190, complete genome 47 0.003
dbj|AK085898.1| Mus musculus 16 days neonate heart cDNA, RIKEN f... 36 0.004
emb|AL353995.1|ATF12B17 Arabidopsis thaliana DNA chromosome 5, B... 43 0.004
ref|XM_424816.2| PREDICTED: Gallus gallus similar to OTTHUMP0000... 46 0.005
dbj|AP007151.1| Aspergillus oryzae RIB40 genomic DNA, SC005 35 0.005
emb|BX933712.1| Gallus gallus finished cDNA, clone ChEST423d20 45 0.005
dbj|AK066350.1| Oryza sativa Japonica Group cDNA clone:J013062E1... 44 0.025
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 41 0.030
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.032
ref|XM_740295.1| Plasmodium chabaudi chabaudi hypothetical prote... 43 0.040
emb|AL663014.3|OSJN00212 Oryza sativa genomic DNA, chromosome 4,... 41 0.042
emb|AL606602.2|OSJN00067 Oryza sativa genomic DNA, chromosome 4,... 41 0.042
dbj|AP002522.1| Oryza sativa Japonica Group genomic DNA, chromos... 42 0.045
dbj|AK288951.1| Oryza sativa Japonica Group cDNA, clone: J090083... 41 0.050
gb|EU212252.1| Armigeres subalbatus ASAP ID ACN-0187599 putative... 41 0.11
gb|EU963544.1| Zea mays clone 263928 mRNA sequence 41 0.11
gb|AC212435.2| Solanum lycopersicum chromosome 11 clone C11HBa01... 40 0.18
gb|AF275345.3| Lycopersicon esculentum putative permease gene, p... 40 0.18
emb|AL590418.16| Mouse DNA sequence from clone RP23-206I14 on ch... 34 0.24
ref|XM_001940002.1| Pyrenophora tritici-repentis Pt-1C-BFP conse... 40 0.37
gb|AY111670.1| Zea mays CL20712_1 mRNA sequence 39 0.73
emb|FM992695.1| Candida dubliniensis CD36 chromosome R, complete... 39 0.83
ref|XM_947304.1| Theileria annulata glutaminyl-trna synthetase, ... 37 1.5
ref|XM_002234154.1| Branchiostoma floridae hypothetical protein ... 37 1.5
ref|XM_001487661.1| Pichia guilliermondii ATCC 6260 hypothetical... 37 1.5
ref|XM_706913.1| Candida albicans SC5314 hypothetical protein (C... 36 3.3
ref|XM_706893.1| Candida albicans SC5314 hypothetical protein (C... 36 3.3
emb|BX548060.7| Zebrafish DNA sequence from clone CH211-117I10 i... 36 4.6
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 36 5.0
dbj|AP004193.3| Oryza sativa Japonica Group genomic DNA, chromos... 36 5.0
ref|XM_002231485.1| Branchiostoma floridae hypothetical protein ... 35 7.2
emb|BX548058.9| Zebrafish DNA sequence from clone CH211-181H11 i... 35 7.4
emb|BX571883.3| Zebrafish DNA sequence from clone DKEY-151P17 in... 35 7.4
gb|AF162706.1|AF162706 Gallus gallus protein tyrosine phosphatas... 35 8.0
>emb|AM494942.1| Leishmania braziliensis chromosome 5
Length = 459355
Score = 293 bits (750), Expect = 1e-77, Method: Composition-based stats.
Identities = 152/166 (91%), Positives = 152/166 (91%)
Frame = +1
Query: 1 RSPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNT 60
RSPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNT
Sbjct: 84892 RSPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNT 85071
Query: 61 TAPPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSVW 120
TAPPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSVW
Sbjct: 85072 TAPPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSVW 85251
Query: 121 FILLGVYPYGSYVMYSYMLAQRRKMFXXXXXXXXXXXXXDXCLAMP 166
FILLGVYPYGSYVMYSYMLAQRRKMF D CLAMP
Sbjct: 85252 FILLGVYPYGSYVMYSYMLAQRRKMFAKAASERAKKSA*D*CLAMP 85389
>ref|XM_001561791.1| Leishmania braziliensis MHOM/BR/75/M2904 protein tyrosine
phosphatase, putative (LbrM05_V2.0270) partial mRNA
Length = 675
Score = 281 bits (718), Expect = 7e-74, Method: Composition-based stats.
Identities = 146/146 (100%), Positives = 146/146 (100%)
Frame = +1
Query: 1 RSPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNT 60
RSPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNT
Sbjct: 199 RSPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNT 378
Query: 61 TAPPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSVW 120
TAPPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSVW
Sbjct: 379 TAPPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSVW 558
Query: 121 FILLGVYPYGSYVMYSYMLAQRRKMF 146
FILLGVYPYGSYVMYSYMLAQRRKMF
Sbjct: 559 FILLGVYPYGSYVMYSYMLAQRRKMF 636
>ref|XM_001687452.1| Leishmania major strain Friedlin protein tyrosine phosphatase,
putative (LmjF05.0280) partial mRNA
Length = 675
Score = 256 bits (653), Expect = 2e-66, Method: Composition-based stats.
Identities = 128/146 (87%), Positives = 137/146 (93%)
Frame = +1
Query: 1 RSPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNT 60
RSPVGTT LQVLSRLIVLYGAVR+GDT++T+SL FVQM+VAWCLSE+IRYSFYGANLL
Sbjct: 199 RSPVGTTFLQVLSRLIVLYGAVRIGDTDSTKSLVFVQMLVAWCLSEIIRYSFYGANLLRV 378
Query: 61 TAPPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSVW 120
LTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVE+PNKLNFTFSWYN+VW
Sbjct: 379 NVASLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVELPNKLNFTFSWYNAVW 558
Query: 121 FILLGVYPYGSYVMYSYMLAQRRKMF 146
FILLG+YPYGSYVMYSYMLAQRRK F
Sbjct: 559 FILLGIYPYGSYVMYSYMLAQRRKTF 636
>emb|AM502223.1| Leishmania infantum chromosome 5
Length = 455874
Score = 255 bits (651), Expect = 4e-66, Method: Composition-based stats.
Identities = 128/146 (87%), Positives = 137/146 (93%)
Frame = +1
Query: 1 RSPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNT 60
RSPVGTT LQVLSRLIVLYGAVR+GDT++T+SL FVQM+VAWCLSE+IRYSFYGANLL
Sbjct: 73684 RSPVGTTFLQVLSRLIVLYGAVRIGDTDSTKSLVFVQMLVAWCLSEIIRYSFYGANLLRV 73863
Query: 61 TAPPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSVW 120
LTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVE+PNKLNFTFSWYN+VW
Sbjct: 73864 NLASLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVELPNKLNFTFSWYNTVW 74043
Query: 121 FILLGVYPYGSYVMYSYMLAQRRKMF 146
FILLG+YPYGSYVMYSYMLAQRRK F
Sbjct: 74044 FILLGIYPYGSYVMYSYMLAQRRKTF 74121
>ref|XM_001462951.1| Leishmania infantum protein tyrosine phosphatase, putative
(LinJ05.0250) partial mRNA
Length = 675
Score = 254 bits (650), Expect = 5e-66, Method: Composition-based stats.
Identities = 128/146 (87%), Positives = 137/146 (93%)
Frame = +1
Query: 1 RSPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNT 60
RSPVGTT LQVLSRLIVLYGAVR+GDT++T+SL FVQM+VAWCLSE+IRYSFYGANLL
Sbjct: 199 RSPVGTTFLQVLSRLIVLYGAVRIGDTDSTKSLVFVQMLVAWCLSEIIRYSFYGANLLRV 378
Query: 61 TAPPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSVW 120
LTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVE+PNKLNFTFSWYN+VW
Sbjct: 379 NLASLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVELPNKLNFTFSWYNTVW 558
Query: 121 FILLGVYPYGSYVMYSYMLAQRRKMF 146
FILLG+YPYGSYVMYSYMLAQRRK F
Sbjct: 559 FILLGIYPYGSYVMYSYMLAQRRKTF 636
>ref|XM_800294.1| Trypanosoma cruzi strain CL Brener protein tyrosine phosphatase
partial mRNA
Length = 705
Score = 199 bits (506), Expect = 2e-49, Method: Composition-based stats.
Identities = 101/146 (69%), Positives = 123/146 (84%)
Frame = +1
Query: 1 RSPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNT 60
RSPV TT +QV SRLIVL+G++R+G TE+ S F QMVVAW LSE+IRY+FY NLL+
Sbjct: 196 RSPVPTTFMQVSSRLIVLFGSLRIGPTESRHSPFFTQMVVAWSLSEIIRYAFYATNLLDF 375
Query: 61 TAPPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSVW 120
LTWLRY+AFM+LYPVGI+GEIGC YKALPYIK +KPW++E+PN+ N+TFSWYN+VW
Sbjct: 376 KPKILTWLRYTAFMLLYPVGISGEIGCFYKALPYIKANKPWSMELPNRYNWTFSWYNTVW 555
Query: 121 FILLGVYPYGSYVMYSYMLAQRRKMF 146
ILLG+YPYGSYVMY+YML QRRK+
Sbjct: 556 LILLGLYPYGSYVMYTYMLQQRRKVL 633
>ref|XM_818188.1| Trypanosoma brucei TREU927 protein tyrosine phosphatase
(Tb10.406.0290) partial mRNA
Length = 801
Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats.
Identities = 97/144 (67%), Positives = 114/144 (79%)
Frame = +1
Query: 1 RSPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNT 60
RSPVGTTLLQVLSRL+VLYGA+ +G T A S QM+VAW L+EVIRY+FY +NL
Sbjct: 307 RSPVGTTLLQVLSRLLVLYGALEIGPTAARMSPFATQMIVAWSLAEVIRYTFYASNLAGV 486
Query: 61 TAPPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSVW 120
P+TWLRYSAF VLYP+GITGEI C ALPYI++ KPWTVE+PN+LNF+FSWY +V
Sbjct: 487 KLKPVTWLRYSAFTVLYPMGITGEIACFISALPYIREKKPWTVELPNRLNFSFSWYYTVL 666
Query: 121 FILLGVYPYGSYVMYSYMLAQRRK 144
+L VYP GSYVMY+YML QRRK
Sbjct: 667 LLLAVVYPAGSYVMYTYMLQQRRK 738
>dbj|AK251796.1| Hordeum vulgare subsp. vulgare cDNA clone: FLbaf135f16, mRNA
sequence
Length = 1120
Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats.
Identities = 68/146 (46%), Positives = 96/146 (65%), Gaps = 2/146 (1%)
Frame = +2
Query: 1 RSPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQ-MVVAWCLSEVIRYSFYGANLLN 59
RSPV TL Q+ SRL V +G L TR+ V +V++W ++E+IRYSF+G L
Sbjct: 473 RSPVSATLPQIGSRLFVTWGI--LWSFPETRTHILVSSLVISWSITEIIRYSFFGTKELF 646
Query: 60 TTAPP-LTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNS 118
+AP L WLRYS+F+V+YP GI+ E+G +Y AL +IK + + V MPNK N++F ++ +
Sbjct: 647 GSAPSSLLWLRYSSFLVMYPTGISSEVGLIYIALQFIKASEKYCVRMPNKWNYSFDYFYA 826
Query: 119 VWFILLGVYPYGSYVMYSYMLAQRRK 144
+LL VY GS MY+YML QR+K
Sbjct: 827 SILVLL-VYVPGSPHMYTYMLGQRKK 901
>ref|NM_001085097.1| Arabidopsis thaliana PAS2 (PASTICCINO 2) (PAS2) mRNA, complete cds
Length = 1005
Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats.
Identities = 62/145 (42%), Positives = 91/145 (62%), Gaps = 1/145 (0%)
Frame = +1
Query: 1 RSPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNT 60
RSPV TL Q+ SRL + +G + E +V++W ++E+IRYSF+G
Sbjct: 307 RSPVSATLPQIGSRLFLTWG-ILYSFPEVRSHFLVTSLVISWSITEIIRYSFFGFKEALG 483
Query: 61 TAPPL-TWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSV 119
AP WLRYS+F++LYP GIT E+G +Y ALP+IK + ++V MPN LNF+F ++ +
Sbjct: 484 FAPSWHLWLRYSSFLLLYPTGITSEVGLIYLALPHIKTSEMYSVRMPNILNFSFDFFYAT 663
Query: 120 WFILLGVYPYGSYVMYSYMLAQRRK 144
++L +Y GS MY YML QR++
Sbjct: 664 -ILVLAIYVPGSPHMYRYMLGQRKR 735
>gb|EU650783.1| Brassica rapa subsp. pekinensis clone EST-114 PASTICCINO 2 (PAS2)
mRNA, complete cds
Length = 690
Score = 108 bits (271), Expect = 5e-22, Method: Composition-based stats.
Identities = 63/145 (43%), Positives = 91/145 (62%), Gaps = 1/145 (0%)
Frame = +1
Query: 1 RSPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNT 60
RSPV TL Q+ SRL + +G + E +V++W ++E+IRYSF+G
Sbjct: 211 RSPVSATLPQIGSRLFLTWG-ILYSFPEVQSHFLVASLVISWSITEIIRYSFFGLKEALG 387
Query: 61 TAPPL-TWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSV 119
AP WLRYS+F+VLYP GIT E+G +Y ALP+IK + ++V MPN LNF+F ++ +
Sbjct: 388 FAPSWHLWLRYSSFLVLYPTGITSEVGLIYLALPHIKASEMYSVRMPNTLNFSFDFFYAT 567
Query: 120 WFILLGVYPYGSYVMYSYMLAQRRK 144
++L +Y GS MY YML QR++
Sbjct: 568 -ILVLAIYVPGSPHMYRYMLGQRKR 639
>ref|XM_001650471.1| Aedes aegypti ptpla domain protein partial mRNA
Length = 1053
Score = 108 bits (271), Expect = 5e-22, Method: Composition-based stats.
Identities = 63/145 (43%), Positives = 93/145 (64%)
Frame = +3
Query: 2 SPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNTT 61
+PV TT QV SR++V+ G V T T S ++AW ++E+IRY +Y NL+N+
Sbjct: 351 NPVITTF-QVFSRVMVVCGVVMATPTGKT-SPGLPLALLAWTITEIIRYGYYALNLVNSV 524
Query: 62 APPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSVWF 121
+ +LRY+ F+VLYP+G+TGE+ C Y A Y+++ K W++EMPN NFTFS++ +W
Sbjct: 525 PHFVIFLRYTTFIVLYPIGVTGELLCFYWAQSYVRESKQWSIEMPNPYNFTFSYFYFLWL 704
Query: 122 ILLGVYPYGSYVMYSYMLAQRRKMF 146
I+L P MY +M AQRRK+
Sbjct: 705 IMLLYIPLFPQ-MYLHMFAQRRKIL 776
>ref|XM_002114378.1| Trichoplax adhaerens expressed hypothetical protein, mRNA
Length = 1044
Score = 108 bits (270), Expect = 5e-22, Method: Composition-based stats.
Identities = 60/144 (41%), Positives = 91/144 (63%)
Frame = +1
Query: 1 RSPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNT 60
R+ V T QV SRLI+ +G + L E ++A V+AW ++E+IRYS+Y N++
Sbjct: 232 RANVVLTAFQVASRLIIYWGVI-LSVKEIQDTIAVELAVMAWTITEIIRYSYYTTNIIGF 408
Query: 61 TAPPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSVW 120
L+WLRY+ F+VLYP G++GE+ C+ +LPY+ K K ++ EMPN LN +F +Y+++
Sbjct: 409 APYILSWLRYTLFIVLYPCGVSGELLCIIYSLPYVAKRKLYSYEMPNDLNMSFDYYSALI 588
Query: 121 FILLGVYPYGSYVMYSYMLAQRRK 144
FI L P +Y +M QRRK
Sbjct: 589 FISLLYIPIFPQ-LYGHMFRQRRK 657
>gb|EU959335.1| Zea mays clone 216404 PAS2 mRNA, complete cds
Length = 1148
Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats.
Identities = 65/143 (45%), Positives = 89/143 (62%), Gaps = 1/143 (0%)
Frame = +3
Query: 1 RSPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNT 60
RSPV TL Q+ SRL + +G V E L +V++W ++E+IRYSF+G
Sbjct: 459 RSPVSATLPQIGSRLFLTWG-VLWSFPETQSHLLVTTLVISWSITEIIRYSFFGTKEAFG 635
Query: 61 TAPP-LTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSV 119
AP L WLRYS FM+LYP GI+ E+G +Y ALPY+K + + + MPNK NF++ ++ S
Sbjct: 636 FAPSWLLWLRYSTFMLLYPTGISSEVGLIYIALPYMKASEKYCIRMPNKWNFSYDYFYSS 815
Query: 120 WFILLGVYPYGSYVMYSYMLAQR 142
LL +Y GS MY YML+QR
Sbjct: 816 VLALL-IYVPGSPHMYRYMLSQR 881
>ref|XM_002310833.1| Populus trichocarpa predicted protein, mRNA
Length = 1057
Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats.
Identities = 63/145 (43%), Positives = 91/145 (62%), Gaps = 1/145 (0%)
Frame = +1
Query: 1 RSPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNT 60
RSP+ TL Q+ SRL + + + E +V++W ++E+IRYSF+G +
Sbjct: 391 RSPITATLPQIGSRLYLTW-IILYSFPEIRSHFLVTSLVISWSITEIIRYSFFGVKEVLG 567
Query: 61 TAPP-LTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSV 119
AP L WLRYS F++LYP GI+ E+G +Y ALPYIK + + + MPNK NF+F + +
Sbjct: 568 FAPSWLMWLRYSTFLLLYPTGISSEVGLVYFALPYIKGSEKYCLRMPNKWNFSFDNFYAA 747
Query: 120 WFILLGVYPYGSYVMYSYMLAQRRK 144
++LG+Y GS MYSYML QR+K
Sbjct: 748 -ILVLGIYIPGSPHMYSYMLGQRKK 819
>gb|EF144571.1| Populus trichocarpa clone WS01111_B04 unknown mRNA
Length = 1020
Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats.
Identities = 63/145 (43%), Positives = 91/145 (62%), Gaps = 1/145 (0%)
Frame = +3
Query: 1 RSPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNT 60
RSP+ TL Q+ SRL + + + E +V++W ++E+IRYSF+G +
Sbjct: 342 RSPITATLPQIGSRLYLTW-IILYSFPEIRSHFLVTSLVISWSITEIIRYSFFGVKEVLG 518
Query: 61 TAPP-LTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSV 119
AP L WLRYS F++LYP GI+ E+G +Y ALPYIK + + + MPNK NF+F + +
Sbjct: 519 FAPSWLMWLRYSTFLLLYPTGISSEVGLVYFALPYIKGSEKYCLRMPNKWNFSFDNFYAA 698
Query: 120 WFILLGVYPYGSYVMYSYMLAQRRK 144
++LG+Y GS MYSYML QR+K
Sbjct: 699 -ILVLGIYIPGSPHMYSYMLGQRKK 770
>ref|XM_001650240.1| Aedes aegypti ptpla domain protein partial mRNA
Length = 958
Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats.
Identities = 63/145 (43%), Positives = 93/145 (64%)
Frame = +1
Query: 2 SPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNTT 61
+PV TT QV SR++V+ G V T T S ++AW ++E+IRY +Y NL+N+
Sbjct: 259 NPVITTF-QVFSRVMVVCGVVMATPTGKT-SPGLPLALLAWTITEIIRYGYYALNLVNSV 432
Query: 62 APPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSVWF 121
+ +LRY+ F+VLYP+G+TGE+ C Y A Y+++ K W++EMPN NFTFS++ +W
Sbjct: 433 PHFVIFLRYTTFIVLYPIGVTGELLCFYWAQSYVRESKQWSIEMPNPYNFTFSYFYFLWL 612
Query: 122 ILLGVYPYGSYVMYSYMLAQRRKMF 146
I+L P MY +M AQRRK+
Sbjct: 613 IMLLYIPLFPQ-MYLHMFAQRRKIL 684
>gb|EU962618.1| Zea mays clone 244263 PAS2 mRNA, complete cds
Length = 1393
Score = 105 bits (263), Expect = 3e-21, Method: Composition-based stats.
Identities = 65/143 (45%), Positives = 89/143 (62%), Gaps = 1/143 (0%)
Frame = +3
Query: 1 RSPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNT 60
RSPV TL Q+ SRL + +G V E L +V++W ++E+IRYSF+G
Sbjct: 579 RSPVSATLPQIGSRLFLTWG-VLWSFPETQSHLLVTTLVISWSITEIIRYSFFGTKEAFG 755
Query: 61 TAPP-LTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSV 119
AP L WLRYS FM+LYP GI+ E+G +Y ALPY+K + + + MPNK NF++ ++ S
Sbjct: 756 FAPSWLLWLRYSTFMLLYPTGISSEVGLIYIALPYMKASEKYCIRMPNKWNFSYDYFYSS 935
Query: 120 WFILLGVYPYGSYVMYSYMLAQR 142
LL +Y GS MY YML+QR
Sbjct: 936 VLALL-IYVPGSPHMYRYMLSQR 1001
>gb|AY104955.1| Zea mays PCO113584 mRNA sequence
Length = 1444
Score = 105 bits (263), Expect = 3e-21, Method: Composition-based stats.
Identities = 65/143 (45%), Positives = 89/143 (62%), Gaps = 1/143 (0%)
Frame = +1
Query: 1 RSPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNT 60
RSPV TL Q+ SRL + +G V E L +V++W ++E+IRYSF+G
Sbjct: 544 RSPVSATLPQIGSRLFLTWG-VLWSFPETQSHLLVTTLVISWSITEIIRYSFFGTKEAFG 720
Query: 61 TAPP-LTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSV 119
AP L WLRYS FM+LYP GI+ E+G +Y ALPY+K + + + MPNK NF++ ++ S
Sbjct: 721 FAPSWLLWLRYSTFMLLYPTGISSEVGLIYIALPYMKASEKYCIRMPNKWNFSYDYFYSS 900
Query: 120 WFILLGVYPYGSYVMYSYMLAQR 142
LL +Y GS MY YML+QR
Sbjct: 901 VLALL-IYVPGSPHMYRYMLSQR 966
>emb|AJ506746.1|ATH506746 Arabidopsis thaliana mRNA for PEPINO protein (pep gene)
Length = 817
Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats.
Identities = 62/145 (42%), Positives = 91/145 (62%), Gaps = 1/145 (0%)
Frame = +2
Query: 1 RSPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNT 60
RSPV TL Q+ SRL + +G + E +V++W ++E+IRYSF+G
Sbjct: 227 RSPVSATLPQIGSRLFLTWG-ILYSFPEVRSHFLVTSLVISWSITEIIRYSFFGFKEALG 403
Query: 61 TAPPL-TWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSV 119
AP WLRYS+F++LYP GIT E+G +Y ALP+IK + ++V MPN LNF+F ++ +
Sbjct: 404 FAPSWHLWLRYSSFLLLYPTGITSEVGLIYLALPHIKTSEMYSVRMPNILNFSFDFFYAT 583
Query: 120 WFILLGVYPYGSYVMYSYMLAQRRK 144
++L +Y GS MY YML QR++
Sbjct: 584 -ILVLAIYVPGSPHMYRYMLGQRKR 655
>ref|NM_121086.4| Arabidopsis thaliana PAS2 (PASTICCINO 2) (PAS2) mRNA, complete cds
Length = 1012
Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats.
Identities = 62/145 (42%), Positives = 91/145 (62%), Gaps = 1/145 (0%)
Frame = +2
Query: 1 RSPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNT 60
RSPV TL Q+ SRL + +G + E +V++W ++E+IRYSF+G
Sbjct: 314 RSPVSATLPQIGSRLFLTWG-ILYSFPEVRSHFLVTSLVISWSITEIIRYSFFGFKEALG 490
Query: 61 TAPPL-TWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSV 119
AP WLRYS+F++LYP GIT E+G +Y ALP+IK + ++V MPN LNF+F ++ +
Sbjct: 491 FAPSWHLWLRYSSFLLLYPTGITSEVGLIYLALPHIKTSEMYSVRMPNILNFSFDFFYAT 670
Query: 120 WFILLGVYPYGSYVMYSYMLAQRRK 144
++L +Y GS MY YML QR++
Sbjct: 671 -ILVLAIYVPGSPHMYRYMLGQRKR 742
>emb|CU406329.1| Oryza rufipogon (W1943) cDNA clone: ORW1943C111P08, full insert
sequence
Length = 943
Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats.
Identities = 64/143 (44%), Positives = 89/143 (62%), Gaps = 1/143 (0%)
Frame = +1
Query: 1 RSPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNT 60
RSPV TL Q+ SRL + +G + E + +V++W ++E+IRYSF+G
Sbjct: 280 RSPVSATLPQIGSRLFLTWG-ILWSFPETHSHILVTSLVISWSITEIIRYSFFGMKETFG 456
Query: 61 TAPP-LTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSV 119
AP L WLRYS FMVLYP GI+ E+G +Y ALPY+K + + + MPNK NF+F ++
Sbjct: 457 FAPSWLLWLRYSTFMVLYPTGISSEVGLIYIALPYMKATEKYCLRMPNKWNFSFD-FSYA 633
Query: 120 WFILLGVYPYGSYVMYSYMLAQR 142
+ L VY GS M++YMLAQR
Sbjct: 634 SILSLAVYVPGSPHMFTYMLAQR 702
>ref|NM_001058879.1| Oryza sativa (japonica cultivar-group) Os04g0271200 (Os04g0271200)
mRNA, complete cds
Length = 934
Score = 105 bits (262), Expect = 5e-21, Method: Composition-based stats.
Identities = 63/143 (44%), Positives = 90/143 (62%), Gaps = 1/143 (0%)
Frame = +3
Query: 1 RSPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNT 60
RSPV TL Q+ SRL + +G + E + +V++W ++E+IRYSF+G
Sbjct: 240 RSPVSATLPQIGSRLFLTWG-ILWSFPETHSHILVTSLVISWSITEIIRYSFFGMKEAFG 416
Query: 61 TAPP-LTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSV 119
AP L WLRYS FMVLYP GI+ E+G +Y ALPY+K + + + MPNK NF+F ++ +
Sbjct: 417 FAPSWLLWLRYSTFMVLYPTGISSEVGLIYIALPYMKASEKYCLRMPNKWNFSFDFFYAS 596
Query: 120 WFILLGVYPYGSYVMYSYMLAQR 142
+ L +Y GS M++YMLAQR
Sbjct: 597 -ILSLAIYVPGSPHMFTYMLAQR 662
>dbj|AK060035.1| Oryza sativa Japonica Group cDNA clone:006-304-A09, full insert
sequence
Length = 934
Score = 105 bits (262), Expect = 5e-21, Method: Composition-based stats.
Identities = 63/143 (44%), Positives = 90/143 (62%), Gaps = 1/143 (0%)
Frame = +3
Query: 1 RSPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNT 60
RSPV TL Q+ SRL + +G + E + +V++W ++E+IRYSF+G
Sbjct: 240 RSPVSATLPQIGSRLFLTWG-ILWSFPETHSHILVTSLVISWSITEIIRYSFFGMKEAFG 416
Query: 61 TAPP-LTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSV 119
AP L WLRYS FMVLYP GI+ E+G +Y ALPY+K + + + MPNK NF+F ++ +
Sbjct: 417 FAPSWLLWLRYSTFMVLYPTGISSEVGLIYIALPYMKASEKYCLRMPNKWNFSFDFFYAS 596
Query: 120 WFILLGVYPYGSYVMYSYMLAQR 142
+ L +Y GS M++YMLAQR
Sbjct: 597 -ILSLAIYVPGSPHMFTYMLAQR 662
>gb|AY065090.1| Arabidopsis thaliana putative protein phosphatase (At5g10480;
F12B17_170) mRNA, complete cds
Length = 974
Score = 105 bits (262), Expect = 5e-21, Method: Composition-based stats.
Identities = 62/145 (42%), Positives = 91/145 (62%), Gaps = 1/145 (0%)
Frame = +1
Query: 1 RSPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNT 60
RSPV TL Q+ SRL + +G + E +V++W ++E+IRYSF+G
Sbjct: 307 RSPVSATLPQIGSRLFLTWG-ILYSFPEVRSHFLVTSLVISWSITEIIRYSFFGFKEALG 483
Query: 61 TAPPL-TWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSV 119
AP WLRYS+F++LYP GIT E+G +Y ALP+IK + ++V MPN LNF+F ++ +
Sbjct: 484 FAPSWHLWLRYSSFLLLYPTGITSEVGLIYLALPHIKTSEMYSVRMPNILNFSFDFFYAT 663
Query: 120 WFILLGVYPYGSYVMYSYMLAQRRK 144
++L +Y GS MY YML QR++
Sbjct: 664 -ILVLAIYVPGSPHMYRYMLGQRKR 735
>gb|AY047708.1| Arabidopsis thaliana PASTICCINO2 mRNA, complete cds
Length = 948
Score = 105 bits (262), Expect = 5e-21, Method: Composition-based stats.
Identities = 62/145 (42%), Positives = 91/145 (62%), Gaps = 1/145 (0%)
Frame = +3
Query: 1 RSPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNT 60
RSPV TL Q+ SRL + +G + E +V++W ++E+IRYSF+G
Sbjct: 294 RSPVSATLPQIGSRLFLTWG-ILYSFPEVRSHFLVTSLVISWSITEIIRYSFFGFKEALG 470
Query: 61 TAPPL-TWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSV 119
AP WLRYS+F++LYP GIT E+G +Y ALP+IK + ++V MPN LNF+F ++ +
Sbjct: 471 FAPSWHLWLRYSSFLLLYPTGITSEVGLIYLALPHIKTSEMYSVRMPNILNFSFDFFYAT 650
Query: 120 WFILLGVYPYGSYVMYSYMLAQRRK 144
++L +Y GS MY YML QR++
Sbjct: 651 -ILVLAIYVPGSPHMYRYMLGQRKR 722
>dbj|AK060935.1| Oryza sativa Japonica Group cDNA clone:006-201-B11, full insert
sequence
Length = 1083
Score = 105 bits (262), Expect = 5e-21, Method: Composition-based stats.
Identities = 64/143 (44%), Positives = 89/143 (62%), Gaps = 1/143 (0%)
Frame = +3
Query: 1 RSPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNT 60
RSPV TL Q+ SRL + +G + E + +V++W ++E+IRYSF+G
Sbjct: 273 RSPVSATLPQIGSRLFLTWG-ILWSFPETHSHILVTSLVISWSITEIIRYSFFGMKETFG 449
Query: 61 TAPP-LTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSV 119
AP L WLRYS FMVLYP GI+ E+G +Y ALPY+K + + + MPNK NF+F ++
Sbjct: 450 FAPSWLLWLRYSTFMVLYPTGISSEVGLIYIALPYMKATEKYCLRMPNKWNFSFD-FSYA 626
Query: 120 WFILLGVYPYGSYVMYSYMLAQR 142
+ L VY GS M++YMLAQR
Sbjct: 627 SILSLAVYVPGSPHMFTYMLAQR 695
>gb|BT006269.1| Arabidopsis thaliana At5g10480 mRNA, complete cds
Length = 666
Score = 105 bits (261), Expect = 6e-21, Method: Composition-based stats.
Identities = 62/145 (42%), Positives = 91/145 (62%), Gaps = 1/145 (0%)
Frame = +1
Query: 1 RSPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNT 60
RSPV TL Q+ SRL + +G + E +V++W ++E+IRYSF+G
Sbjct: 211 RSPVSATLPQIGSRLFLTWG-ILYSFPEVRSHFLVTSLVISWSITEIIRYSFFGFKEALG 387
Query: 61 TAPPL-TWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSV 119
AP WLRYS+F++LYP GIT E+G +Y ALP+IK + ++V MPN LNF+F ++ +
Sbjct: 388 FAPSWHLWLRYSSFLLLYPTGITSEVGLIYLALPHIKTSEMYSVRMPNILNFSFDFFYAT 567
Query: 120 WFILLGVYPYGSYVMYSYMLAQRRK 144
++L +Y GS MY YML QR++
Sbjct: 568 -ILVLAIYVPGSPHMYRYMLGQRKR 639
>gb|EF087501.1| Picea sitchensis clone WS02734_I22 unknown mRNA
Length = 1084
Score = 105 bits (261), Expect = 6e-21, Method: Composition-based stats.
Identities = 64/145 (44%), Positives = 87/145 (60%), Gaps = 1/145 (0%)
Frame = +2
Query: 1 RSPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYG-ANLLN 59
RSPV TL Q+ SRL V +G + E +V++W L+E+IRYSF+G
Sbjct: 242 RSPVSATLPQIGSRLFVTWGILH-SFPEVRNHWLVSSLVISWSLTEIIRYSFFGMKEAFG 418
Query: 60 TTAPPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSV 119
T L WLRYS+F V+Y GI+ E+G +Y A+PYIK + V MPNKLNF F ++ +
Sbjct: 419 YTPSWLQWLRYSSFFVMYVTGISSEVGLIYAAIPYIKNSDLYCVRMPNKLNFAFDYFYAS 598
Query: 120 WFILLGVYPYGSYVMYSYMLAQRRK 144
++L VY GS MY YM+ QR+K
Sbjct: 599 -LLVLAVYVPGSPHMYMYMIGQRKK 670
>dbj|AK248945.1| Hordeum vulgare subsp. vulgare cDNA clone: FLbaf12g05, mRNA
sequence
Length = 953
Score = 105 bits (261), Expect = 6e-21, Method: Composition-based stats.
Identities = 63/145 (43%), Positives = 91/145 (62%), Gaps = 1/145 (0%)
Frame = +1
Query: 1 RSPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNT 60
RSPV TL Q+ SRL + +G + E + +V++W ++E+IRYSF+G
Sbjct: 277 RSPVTATLPQIGSRLFLTWG-ILWSFPETQSHILVSSLVISWSITEIIRYSFFGLKETLG 453
Query: 61 TAPP-LTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSV 119
AP L WLRYS FM+LYP GI E+ +Y ALPY+K + + ++MPNK NF+F ++ +
Sbjct: 454 FAPSWLLWLRYSTFMILYPTGIFSEVSLIYIALPYMKVSERYFLKMPNKWNFSFDYFYTC 633
Query: 120 WFILLGVYPYGSYVMYSYMLAQRRK 144
I +GVY G M++YMLAQR+K
Sbjct: 634 -VIAIGVYIPGGPHMFTYMLAQRKK 705
>gb|BT043344.1| Zea mays full-length cDNA clone ZM_BFc0166E23 mRNA, complete cds
Length = 1424
Score = 105 bits (261), Expect = 7e-21, Method: Composition-based stats.
Identities = 65/143 (45%), Positives = 89/143 (62%), Gaps = 1/143 (0%)
Frame = +3
Query: 1 RSPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNT 60
RSPV TL Q+ SRL + +G V E L +V++W ++E+IRYSF+G
Sbjct: 549 RSPVSATLPQIGSRLFLTWG-VLWSFPETQSHLLVTTLVISWSITEIIRYSFFGTKEAFG 725
Query: 61 TAPP-LTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSV 119
AP L WLRYS FM+LYP GI+ E+G +Y ALPY+K + + + MPNK NF++ ++ S
Sbjct: 726 FAPSWLLWLRYSTFMLLYPTGISSEVGLIYIALPYMKASEKYCIRMPNKWNFSYDYFYSS 905
Query: 120 WFILLGVYPYGSYVMYSYMLAQR 142
LL +Y GS MY YML+QR
Sbjct: 906 VLALL-IYVPGSPHMYRYMLSQR 971
>gb|BT039315.1| Zea mays full-length cDNA clone ZM_BFc0005G03 mRNA, complete cds
Length = 1258
Score = 105 bits (261), Expect = 7e-21, Method: Composition-based stats.
Identities = 65/143 (45%), Positives = 89/143 (62%), Gaps = 1/143 (0%)
Frame = +3
Query: 1 RSPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNT 60
RSPV TL Q+ SRL + +G V E L +V++W ++E+IRYSF+G
Sbjct: 327 RSPVSATLPQIGSRLFLTWG-VLWSFPETQSHLLVTTLVISWSITEIIRYSFFGTKEAFG 503
Query: 61 TAPP-LTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSV 119
AP L WLRYS FM+LYP GI+ E+G +Y ALPY+K + + + MPNK NF++ ++ S
Sbjct: 504 FAPSWLLWLRYSTFMLLYPTGISSEVGLIYIALPYMKASEKYCIRMPNKWNFSYDYFYSS 683
Query: 120 WFILLGVYPYGSYVMYSYMLAQR 142
LL +Y GS MY YML+QR
Sbjct: 684 VLALL-IYVPGSPHMYRYMLSQR 749
>ref|NM_001048567.1| Oryza sativa (japonica cultivar-group) Os01g0150200 (Os01g0150200)
mRNA, complete cds
Length = 1162
Score = 104 bits (260), Expect = 7e-21, Method: Composition-based stats.
Identities = 64/143 (44%), Positives = 89/143 (62%), Gaps = 1/143 (0%)
Frame = +2
Query: 1 RSPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNT 60
RSPV TL Q+ SRL + +G + E + +V++W ++E+IRYSF+G
Sbjct: 479 RSPVSATLPQIGSRLFLTWG-ILWSFPETHSHILVTSLVISWSITEIIRYSFFGMKETFG 655
Query: 61 TAPP-LTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSV 119
AP L WLRYS FMVLYP GI+ E+G +Y ALPY+K + + + MPNK NF+F ++
Sbjct: 656 FAPSWLLWLRYSTFMVLYPTGISSEVGLIYIALPYMKATEKYCLRMPNKWNFSFD-FSYA 832
Query: 120 WFILLGVYPYGSYVMYSYMLAQR 142
+ L VY GS M++YMLAQR
Sbjct: 833 SILSLAVYVPGSPHMFTYMLAQR 901
>dbj|AK099465.1| Oryza sativa Japonica Group cDNA clone:J013023K19, full insert
sequence
Length = 1164
Score = 104 bits (260), Expect = 8e-21, Method: Composition-based stats.
Identities = 64/143 (44%), Positives = 89/143 (62%), Gaps = 1/143 (0%)
Frame = +1
Query: 1 RSPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNT 60
RSPV TL Q+ SRL + +G + E + +V++W ++E+IRYSF+G
Sbjct: 481 RSPVSATLPQIGSRLFLTWG-ILWSFPETHSHILVTSLVISWSITEIIRYSFFGMKETFG 657
Query: 61 TAPP-LTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSV 119
AP L WLRYS FMVLYP GI+ E+G +Y ALPY+K + + + MPNK NF+F ++
Sbjct: 658 FAPSWLLWLRYSTFMVLYPTGISSEVGLIYIALPYMKATEKYCLRMPNKWNFSFD-FSYA 834
Query: 120 WFILLGVYPYGSYVMYSYMLAQR 142
+ L VY GS M++YMLAQR
Sbjct: 835 SILSLAVYVPGSPHMFTYMLAQR 903
>emb|BX830563.1|CNS0A25M Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB90ZC03 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 927
Score = 104 bits (260), Expect = 9e-21, Method: Composition-based stats.
Identities = 62/145 (42%), Positives = 91/145 (62%), Gaps = 1/145 (0%)
Frame = +1
Query: 1 RSPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNT 60
RSPV TL Q+ SRL + +G + E +V++W ++E+IRYSF+G
Sbjct: 256 RSPVSATLPQIGSRLFLTWG-ILYSFPEVRSHFLVTSLVISWSITEIIRYSFFGFKEALG 432
Query: 61 TAPPL-TWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSV 119
AP WLRYS+F++LYP GIT E+G +Y ALP+IK + ++V MPN LNF+F ++ +
Sbjct: 433 FAPSWHLWLRYSSFLLLYPTGITSEVGLIYLALPHIKTSEMYSVRMPNILNFSFHFFYAT 612
Query: 120 WFILLGVYPYGSYVMYSYMLAQRRK 144
++L +Y GS MY YML QR++
Sbjct: 613 -ILVLAIYVPGSPHMYRYMLGQRKR 684
>gb|EF173369.1| Aedes aegypti clone BAC 92LO9, complete sequence
Length = 93207
Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats.
Identities = 63/145 (43%), Positives = 93/145 (64%)
Frame = -3
Query: 2 SPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNTT 61
+PV TT QV SR++V+ G V T T S ++AW ++E+IRY +Y NL+N+
Sbjct: 68869 NPVITTF-QVFSRVMVVCGVVMATPTGKT-SPGLPLALLAWTITEIIRYGYYALNLVNSV 68696
Query: 62 APPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSVWF 121
+ +LRY+ F+VLYP+G+TGE+ C Y A Y+++ K W++EMPN NFTFS++ +W
Sbjct: 68695 PHFVIFLRYTTFIVLYPIGVTGELLCFYWAQSYVRESKQWSIEMPNPYNFTFSYFYFLWL 68516
Query: 122 ILLGVYPYGSYVMYSYMLAQRRKMF 146
I+L P MY +M AQRRK+
Sbjct: 68515 IMLLYIPLFPQ-MYLHMFAQRRKIL 68444
Score = 91.7 bits (226), Expect = 8e-17, Method: Composition-based stats.
Identities = 57/141 (40%), Positives = 78/141 (55%), Gaps = 1/141 (0%)
Frame = -2
Query: 7 TLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNTTAPP-L 65
TLLQV R +V+ A+ G E S + W L E IRYS+Y +L T P +
Sbjct: 79835 TLLQVFGRCMVVVAAIE-GTPEGKVSPGLPIALFCWSLMETIRYSYYVLHLALTKVPFFM 79659
Query: 66 TWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSVWFILLG 125
TWLRY+ F+ LYP G GE+ C Y A + ++ W++ MPN+ NFTFS+Y W + +G
Sbjct: 79658 TWLRYTIFIPLYPTGFIGELLCFYWAQSHFRETDKWSLSMPNRFNFTFSFYYFAWIMSIG 79479
Query: 126 VYPYGSYVMYSYMLAQRRKMF 146
P MY +M QRRK+
Sbjct: 79478 YLPMFPQ-MYLHMFGQRRKIL 79419
>emb|CT830369.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI005F01, full
insert sequence
Length = 814
Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats.
Identities = 64/143 (44%), Positives = 90/143 (62%), Gaps = 1/143 (0%)
Frame = +2
Query: 1 RSPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNT 60
RSPV TL Q+ SRL + +G + E + +V++W ++E+IRYSF+G
Sbjct: 119 RSPVSATLPQIGSRLFLTWG-ILWSFPETHSHILVTSLVISWSITEIIRYSFFGMKEAFG 295
Query: 61 TAPP-LTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSV 119
AP L WLRYS FMVLYP GI+ E+G +Y ALPY+K + + + MPNK NF+F ++ +
Sbjct: 296 FAPSWLLWLRYSTFMVLYPTGISSEVGLIYIALPYMKASEKYCLRMPNKWNFSFDFFYAS 475
Query: 120 WFILLGVYPYGSYVMYSYMLAQR 142
+ L VY GS M++YMLAQR
Sbjct: 476 -ILSLAVYVPGSPHMFTYMLAQR 541
>ref|XM_637041.1| Dictyostelium discoideum AX4 hypothetical protein
(DDBDRAFT_0204430) partial mRNA
Length = 678
Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats.
Identities = 58/144 (40%), Positives = 91/144 (63%)
Frame = +1
Query: 1 RSPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNT 60
++ TT +QV SR+ ++ A + T+ L+ M+++W ++EVIRYSFY ++L
Sbjct: 202 KTSAATTFIQVFSRVACVFLAQNVPTTQNHFFLSL--MLMSWSITEVIRYSFYALSILKI 375
Query: 61 TAPPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSVW 120
+ L WLRY+ F++LYP G+TGE G ++ +L ++K K T+ MPN LNF F ++N +
Sbjct: 376 DSYILGWLRYTTFIILYPTGVTGETGTIWTSLEFVKNTKFMTLTMPNSLNFAFDFHNILI 555
Query: 121 FILLGVYPYGSYVMYSYMLAQRRK 144
F LG Y G +Y+YML QR+K
Sbjct: 556 FS-LGFYVIGLPYLYTYMLGQRKK 624
>gb|DQ480551.1| Schistosoma mansoni protein tyrosine phosphatase-like protein mRNA,
complete cds
Length = 1059
Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats.
Identities = 56/146 (38%), Positives = 95/146 (65%)
Frame = +3
Query: 1 RSPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNT 60
RS V TT+LQV SRL+V++G + + A +L +V++W ++E+IRYS+Y A++
Sbjct: 240 RSSVMTTMLQVSSRLLVVWGILYMVPEVARDNLGVPLIVISWSIAEMIRYSYYVADICRV 419
Query: 61 TAPPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSVW 120
LTWLRYS FM+LYP GI+GE+ + + +++ + ++ ++PN LN + S++ +
Sbjct: 420 KLNLLTWLRYSGFMILYPTGISGEVLLIVSGIKRLRETEQYSFDLPNALNCSLSYWFAFA 599
Query: 121 FILLGVYPYGSYVMYSYMLAQRRKMF 146
IL+ P GS MY++M+ QR+K+
Sbjct: 600 AILITYIP-GSKTMYTHMMRQRKKVL 674
>ref|XM_001071670.1| PREDICTED: Rattus norvegicus protein tyrosine phosphatase-like
(proline instead of catalytic arginine), member b
(predicted) (Ptplb_predicted), mRNA
Length = 1809
Score = 102 bits (255), Expect = 3e-20, Method: Composition-based stats.
Identities = 53/145 (36%), Positives = 90/145 (62%)
Frame = +1
Query: 2 SPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNTT 61
S V T QV+SR+ +++ AV E + + V+AW ++E+IRYSFY +LLN
Sbjct: 673 SSVVLTSFQVMSRVFLIW-AVTHSVKEVQSEDSVLLFVIAWTITEIIRYSFYTFSLLNHL 849
Query: 62 APPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSVWF 121
+ W RY+ F+VLYP+G+TGE+ +Y ALPY+++ +++ +PNK NF+F ++ +
Sbjct: 850 PYIIKWARYTLFIVLYPMGVTGELLTIYAALPYVRQAGLYSISLPNKYNFSFDYHAFLIL 1029
Query: 122 ILLGVYPYGSYVMYSYMLAQRRKMF 146
+++ P +Y +M+ QRRK+
Sbjct: 1030VMISYIPLFPQ-LYFHMIQQRRKVL 1101
>gb|CP000601.1| Ostreococcus lucimarinus CCE9901 chromosome 21, complete sequence
Length = 321799
Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats.
Identities = 60/155 (38%), Positives = 87/155 (56%), Gaps = 9/155 (5%)
Frame = -2
Query: 1 RSPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFV--------QMVVAWCLSEVIRYSF 52
RSPV T +QV SRL+V++G + L T SL V +++AW ++EV+RYSF
Sbjct: 111021 RSPVLVTAMQVSSRLMVVWGVLHLAPVSRTASLDVVGPLKIGVPSLMLAWGVTEVVRYSF 110842
Query: 53 YGANLLNTTAP-PLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNF 111
Y L+ P +TW RY+ F+VLYP+G++ E+ Y Y+ K P EMPN +NF
Sbjct: 110841 YFFKLVRGDVPRAVTWCRYTLFIVLYPLGVSSELFLAYSGFKYLVKTNPLAYEMPNAVNF 110662
Query: 112 TFSWYNSVWFILLGVYPYGSYVMYSYMLAQRRKMF 146
F ++ G P G ++Y YML QR+K+
Sbjct: 110661 AFHLPTAMLMFFAGYAP-GFPMLYGYMLGQRKKVL 110560
>gb|CP000593.1| Ostreococcus lucimarinus CCE9901 chromosome 13, complete sequence
Length = 528469
Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats.
Identities = 60/155 (38%), Positives = 87/155 (56%), Gaps = 9/155 (5%)
Frame = +2
Query: 1 RSPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFV--------QMVVAWCLSEVIRYSF 52
RSPV T +QV SRL+V++G + L T SL V +++AW ++EV+RYSF
Sbjct: 417449 RSPVLVTAMQVSSRLMVVWGVLHLAPVSRTASLDVVGPLKIGVPSLMLAWGVTEVVRYSF 417628
Query: 53 YGANLLNTTAP-PLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNF 111
Y L+ P +TW RY+ F+VLYP+G++ E+ Y Y+ K P EMPN +NF
Sbjct: 417629 YFFKLVRGDVPRAVTWCRYTLFIVLYPLGVSSELFLAYSGFKYLVKTNPLAYEMPNAVNF 417808
Query: 112 TFSWYNSVWFILLGVYPYGSYVMYSYMLAQRRKMF 146
F ++ G P G ++Y YML QR+K+
Sbjct: 417809 AFHLPTAMLMFFAGYAP-GFPMLYGYMLGQRKKVL 417910
>ref|XM_001861437.1| Culex quinquefasciatus ptpla domain protein, mRNA
Length = 699
Score = 102 bits (253), Expect = 6e-20, Method: Composition-based stats.
Identities = 60/145 (41%), Positives = 91/145 (62%)
Frame = +1
Query: 2 SPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNTT 61
+PV TT QVLSR++V+ G V T T S ++AW ++E+IRY +Y NL++
Sbjct: 226 NPVITTF-QVLSRVMVVCGVVMATPTGKT-SPGLPLALLAWSVTEIIRYGYYALNLVDAV 399
Query: 62 APPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSVWF 121
L +LRY+ F+ LYP+G+TGE+ C Y A ++++ K W++EMPN NFTFS++ +W
Sbjct: 400 PKLLVFLRYTTFIALYPIGVTGELLCFYWAQSFVRESKQWSIEMPNAANFTFSYFYFLWT 579
Query: 122 ILLGVYPYGSYVMYSYMLAQRRKMF 146
++ P MY +M AQRRK+
Sbjct: 580 VMALYIPLFPQ-MYLHMFAQRRKIL 651
>ref|XM_001924269.1| PREDICTED: Sus scrofa similar to protein tyrosine phosphatase-like
(proline instead of catalytic arginine), member b
(LOC100158009), mRNA
Length = 1140
Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats.
Identities = 53/145 (36%), Positives = 90/145 (62%)
Frame = +1
Query: 2 SPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNTT 61
S V T QV+SR+ +++ AV E + + VVAW ++E+IRYSFY +LLN
Sbjct: 187 SSVVLTSFQVMSRVFLIW-AVTHSVKEVQSEDSVLLFVVAWTITEIIRYSFYTFSLLNHL 363
Query: 62 APPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSVWF 121
+ W RY+ F+VLYP+G++GE+ +Y ALP++++ +++ +PNK NF+F +Y +
Sbjct: 364 PYLIKWARYTLFIVLYPMGVSGELLTVYAALPFVRQAGLYSISLPNKYNFSFDYYTFLIL 543
Query: 122 ILLGVYPYGSYVMYSYMLAQRRKMF 146
+++ P +Y +M+ QRRK+
Sbjct: 544 MMISYIPIFPQ-LYFHMIHQRRKVL 615
>emb|BX035979.1|CNS08ZXB Single read from an extremity of a full-length cDNA clone made from
Anopheles gambiae total adult females. 5-PRIME end of
clone FK0AAA7CC11 of strain 6-9 of Anopheles gambiae
(African malaria mosquito)
Length = 1009
Score = 99.0 bits (245), Expect = 5e-19, Method: Composition-based stats.
Identities = 57/145 (39%), Positives = 89/145 (61%)
Frame = +2
Query: 2 SPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNTT 61
+PV TT QVLSR++V+ G V + S ++AW ++E+IRY++Y NL++
Sbjct: 302 NPVITTF-QVLSRVMVVCGVV-MATPTGKVSPGLPLAILAWSVTEIIRYAYYALNLIDAV 475
Query: 62 APPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSVWF 121
L +LRY+ F+VLYP G+TGE+ C + A ++ K W++EMPN NFTFS+ +W
Sbjct: 476 KQLLIFLRYTTFIVLYPTGVTGELLCFFWAQSHVANTKQWSIEMPNTYNFTFSYLYFLWA 655
Query: 122 ILLGVYPYGSYVMYSYMLAQRRKMF 146
++L P +Y +M AQR+K+
Sbjct: 656 VMLLYIPLFPQ-LYLHMFAQRKKIL 727
>ref|XM_001500147.2| PREDICTED: Equus caballus similar to protein tyrosine
phosphatase-like (proline instead of catalytic
arginine), member b (LOC100070489), mRNA
Length = 917
Score = 98.2 bits (243), Expect = 7e-19, Method: Composition-based stats.
Identities = 53/145 (36%), Positives = 90/145 (62%)
Frame = +1
Query: 2 SPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNTT 61
S V T QV+SR+ +++ AV E + + V+AW ++E+IRYSFY +LLN
Sbjct: 427 SSVVLTSFQVMSRVFLIW-AVTHSVKEVQSEDSVLLFVIAWTITEIIRYSFYTFSLLNHL 603
Query: 62 APPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSVWF 121
+ W RY+ F+VLYP+G++GE+ +Y ALP++++ +++ +PNK NF+F +Y +
Sbjct: 604 PYLIKWARYTLFIVLYPMGVSGELLTIYAALPFVRQAGLYSISLPNKYNFSFDYYAFLIL 783
Query: 122 ILLGVYPYGSYVMYSYMLAQRRKMF 146
I++ P +Y +M+ QRRK+
Sbjct: 784 IMISYIPLFPQ-LYFHMIHQRRKVL 855
>gb|DQ416028.1| Acyrthosiphon pisum hypothetical protein mRNA, complete cds
Length = 705
Score = 97.8 bits (242), Expect = 9e-19, Method: Composition-based stats.
Identities = 54/144 (37%), Positives = 89/144 (61%)
Frame = +1
Query: 1 RSPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNT 60
+S + T+ QVLSR+ ++ V + +T + L + AWC +E+ RYS+YG N++
Sbjct: 235 KSNLAVTIQQVLSRVAIVAAIVFIPETSGSPGLPLA--LTAWCFAEITRYSYYGFNIVGY 408
Query: 61 TAPPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSVW 120
+ W RY+ F VLYPVG+TGE+ + +L Y+ + K W++EMPNKLN FS ++++
Sbjct: 409 IPYLIVWARYTFFYVLYPVGVTGELLVYWTSLGYVGRTKMWSIEMPNKLNIAFSLWSAIA 588
Query: 121 FILLGVYPYGSYVMYSYMLAQRRK 144
++L P+ MY +M+ QR+K
Sbjct: 589 IVMLIYIPFFPQ-MYMHMVYQRKK 657
>ref|XM_001177525.1| PREDICTED: Strongylocentrotus purpuratus similar to Ptplb-prov
protein (LOC592170), mRNA
Length = 1066
Score = 97.8 bits (242), Expect = 1e-18, Method: Composition-based stats.
Identities = 56/139 (40%), Positives = 87/139 (62%)
Frame = +2
Query: 7 TLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNTTAPPLT 66
T QV SRL++L+ V E + + + AW ++EVIRY+FY LLN L
Sbjct: 272 TAFQVTSRLVLLW-PVTHSVIEVQNEKSIILYLTAWTITEVIRYAFYVFALLNRLPYVLM 448
Query: 67 WLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSVWFILLGV 126
WLRY+ F+VLYP+G+TGE+ +Y ALPY+K +++E+PN N +F +Y+ + F+++
Sbjct: 449 WLRYTLFIVLYPIGVTGELWTIYLALPYVKSTGLYSLELPNDYNISFDYYSVLIFLMILY 628
Query: 127 YPYGSYVMYSYMLAQRRKM 145
P +YS+ML QR+K+
Sbjct: 629 IPIFPR-LYSHMLRQRKKL 682
>ref|XM_791706.2| PREDICTED: Strongylocentrotus purpuratus similar to Ptplb-prov
protein (LOC592170), mRNA
Length = 1066
Score = 97.8 bits (242), Expect = 1e-18, Method: Composition-based stats.
Identities = 56/139 (40%), Positives = 87/139 (62%)
Frame = +2
Query: 7 TLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNTTAPPLT 66
T QV SRL++L+ V E + + + AW ++EVIRY+FY LLN L
Sbjct: 272 TAFQVTSRLVLLW-PVTHSVIEVQNEKSIILYLTAWTITEVIRYAFYVFALLNRLPYVLM 448
Query: 67 WLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSVWFILLGV 126
WLRY+ F+VLYP+G+TGE+ +Y ALPY+K +++E+PN N +F +Y+ + F+++
Sbjct: 449 WLRYTLFIVLYPIGVTGELWTIYLALPYVKSTGLYSLELPNDYNISFDYYSVLIFLMILY 628
Query: 127 YPYGSYVMYSYMLAQRRKM 145
P +YS+ML QR+K+
Sbjct: 629 IPIFPR-LYSHMLRQRKKL 682
>ref|XM_001674370.1| Caenorhabditis briggsae hypothetical protein CBG19031 partial mRNA
Length = 657
Score = 97.1 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 61/149 (40%), Positives = 95/149 (63%), Gaps = 3/149 (2%)
Frame = +1
Query: 1 RSPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNT 60
RSPVGTT +QV SR+++++ + L T A S+ ++VAW ++EVIRYSFY ++L
Sbjct: 196 RSPVGTTAMQVTSRVVLVWPILHLCST-ARYSIGVPLLLVAWSVTEVIRYSFYALSVLKQ 372
Query: 61 TAPP-LTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSV 119
P L WLRY+ F VLYP+G++GE+ L+ +L + + K T+EMPN+LN S++
Sbjct: 373 PIPYFLLWLRYTLFYVLYPMGVSGELLTLFASLKEVDEKKILTLEMPNRLNMGISFW--- 543
Query: 120 WFILLGVYPY--GSYVMYSYMLAQRRKMF 146
W +++ Y G +Y YM+ QR+K+
Sbjct: 544 WVLIIAALTYIPGFPQLYFYMIGQRKKVL 630
>gb|DQ443235.1| Bombyx mori protein tyrosine phosphatase mRNA, complete cds
Length = 1243
Score = 96.7 bits (239), Expect = 2e-18, Method: Composition-based stats.
Identities = 60/146 (41%), Positives = 93/146 (63%), Gaps = 1/146 (0%)
Frame = +1
Query: 2 SPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNTT 61
S V L+QV SR+ ++ GA+ L AT S ++AW ++E+IRY++Y NL++
Sbjct: 349 SSVLVVLMQVYSRVFLVCGAL-LATQGATTSPGLPLCILAWSITEIIRYAYYALNLVDMV 525
Query: 62 APPLTWLRYSAFMVLYPVGITGEIGCLYKALPY-IKKHKPWTVEMPNKLNFTFSWYNSVW 120
LT+LRYS F+V+YP+GITGE+ C+Y +L + I + K +T+ MPN NF F++Y +
Sbjct: 526 PSSLTFLRYSTFLVMYPLGITGELLCMYHSLGFEIFEKKLFTISMPNAGNFAFNYYYFLI 705
Query: 121 FILLGVYPYGSYVMYSYMLAQRRKMF 146
F + P+ V+ +ML+QRRKM
Sbjct: 706 FYMFWYIPWFP-VLLGHMLSQRRKML 780
>ref|XM_310375.6| Anopheles gambiae str. PEST AGAP003814-PA (AgaP_AGAP003814) mRNA,
partial cds
Length = 960
Score = 96.7 bits (239), Expect = 2e-18, Method: Composition-based stats.
Identities = 57/145 (39%), Positives = 89/145 (61%)
Frame = +1
Query: 2 SPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNTT 61
+PV TT QVLSR++V+ G V + S ++AW ++E+IRY++Y NL++
Sbjct: 253 NPVITTF-QVLSRVMVVCGVV-MATPTGKVSPGLPLAILAWSVTEIIRYAYYALNLIDAV 426
Query: 62 APPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSVWF 121
L +LRY+ F+VLYP G+TGE+ C + A ++ K W++EMPN NFTFS+ +W
Sbjct: 427 PQLLIFLRYTTFIVLYPTGVTGELLCFFWAQSHVASTKQWSIEMPNTYNFTFSYLYFLWA 606
Query: 122 ILLGVYPYGSYVMYSYMLAQRRKMF 146
++L P +Y +M AQR+K+
Sbjct: 607 VMLLYIPLFPQ-LYLHMFAQRKKIL 678
>ref|XM_001422861.1| Ostreococcus lucimarinus CCE9901 predicted protein (OSTLU_29682)
mRNA, complete cds
Length = 684
Score = 96.7 bits (239), Expect = 2e-18, Method: Composition-based stats.
Identities = 60/155 (38%), Positives = 87/155 (56%), Gaps = 9/155 (5%)
Frame = +1
Query: 1 RSPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFV--------QMVVAWCLSEVIRYSF 52
RSPV T +QV SRL+V++G + L T SL V +++AW ++EV+RYSF
Sbjct: 196 RSPVLVTAMQVSSRLMVVWGVLHLAPVSRTASLDVVGPLKIGVPSLMLAWGVTEVVRYSF 375
Query: 53 YGANLLNTTAP-PLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNF 111
Y L+ P +TW RY+ F+VLYP+G++ E+ Y Y+ K P EMPN +NF
Sbjct: 376 YFFKLVRGDVPRAVTWCRYTLFIVLYPLGVSSELFLAYSGFKYLVKTNPLAYEMPNAVNF 555
Query: 112 TFSWYNSVWFILLGVYPYGSYVMYSYMLAQRRKMF 146
F ++ G P G ++Y YML QR+K+
Sbjct: 556 AFHLPTAMLMFFAGYAP-GFPMLYGYMLGQRKKVL 657
>ref|XM_001420960.1| Ostreococcus lucimarinus CCE9901 predicted protein (OSTLU_13214)
mRNA, complete cds
Length = 684
Score = 96.7 bits (239), Expect = 2e-18, Method: Composition-based stats.
Identities = 60/155 (38%), Positives = 87/155 (56%), Gaps = 9/155 (5%)
Frame = +1
Query: 1 RSPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFV--------QMVVAWCLSEVIRYSF 52
RSPV T +QV SRL+V++G + L T SL V +++AW ++EV+RYSF
Sbjct: 196 RSPVLVTAMQVSSRLMVVWGVLHLAPVSRTASLDVVGPLKIGVPSLMLAWGVTEVVRYSF 375
Query: 53 YGANLLNTTAP-PLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNF 111
Y L+ P +TW RY+ F+VLYP+G++ E+ Y Y+ K P EMPN +NF
Sbjct: 376 YFFKLVRGDVPRAVTWCRYTLFIVLYPLGVSSELFLAYSGFKYLVKTNPLAYEMPNAVNF 555
Query: 112 TFSWYNSVWFILLGVYPYGSYVMYSYMLAQRRKMF 146
F ++ G P G ++Y YML QR+K+
Sbjct: 556 AFHLPTAMLMFFAGYAP-GFPMLYGYMLGQRKKVL 657
>ref|XM_213610.4| PREDICTED: Rattus norvegicus protein tyrosine phosphatase-like
(proline instead of catalytic arginine), member b
(predicted) (Ptplb_predicted), mRNA
Length = 1502
Score = 96.7 bits (239), Expect = 2e-18, Method: Composition-based stats.
Identities = 53/145 (36%), Positives = 90/145 (62%)
Frame = +3
Query: 2 SPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNTT 61
S V T QV+SR+ +++ AV E + + V+AW ++E+IRYSFY +LLN
Sbjct: 366 SSVVLTSFQVMSRVFLIW-AVTHSVKEVQSEDSVLLFVIAWTITEIIRYSFYTFSLLNHL 542
Query: 62 APPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSVWF 121
+ W RY+ F+VLYP+G+TGE+ +Y ALPY+++ +++ +PNK NF+F ++ +
Sbjct: 543 PYIIKWARYTLFIVLYPMGVTGELLTIYAALPYVRQAGLYSISLPNKYNFSFDYHAFLIL 722
Query: 122 ILLGVYPYGSYVMYSYMLAQRRKMF 146
+++ P +Y +M+ QRRK+
Sbjct: 723 VMISYIPLFPQ-LYFHMIQQRRKVL 794
>ref|NM_001126150.2| Acyrthosiphon pisum protein tyrosine phosphatase-like protein
(LOC100144797), mRNA
Length = 1431
Score = 96.3 bits (238), Expect = 3e-18, Method: Composition-based stats.
Identities = 54/144 (37%), Positives = 89/144 (61%)
Frame = +2
Query: 1 RSPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNT 60
+S + T+ QVLSR+ ++ V + +T + L + AWC +E+ RYS+YG N++
Sbjct: 587 KSNLAVTIQQVLSRVAIVAAIVFIPETSGSPGLPLA--LTAWCFAEITRYSYYGFNIVGY 760
Query: 61 TAPPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSVW 120
+ W RY+ F VLYPVG+TGE+ + +L Y+ + K W++EMPNKLN FS ++++
Sbjct: 761 IPYLIVWARYTFFYVLYPVGVTGELLVYWTSLGYVGRTKMWSIEMPNKLNIAFSLWSAIA 940
Query: 121 FILLGVYPYGSYVMYSYMLAQRRK 144
++L P+ MY +M+ QR+K
Sbjct: 941 IVMLIYIPFFPQ-MYMHMVYQRKK 1009
>gb|BC168480.1| Xenopus tropicalis cDNA clone MGC:172797 IMAGE:7685118, complete
cds
Length = 4104
Score = 96.3 bits (238), Expect = 3e-18, Method: Composition-based stats.
Identities = 56/144 (38%), Positives = 87/144 (60%)
Frame = +1
Query: 2 SPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNTT 61
S V T QV+SR+ + + AV E + + VVAW ++E+IRYSFY +LLN
Sbjct: 553 SSVVLTAFQVMSRVFLTW-AVTHSVREVQNEDSVLLFVVAWTITEIIRYSFYTFSLLNHL 729
Query: 62 APPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSVWF 121
+ W RY+ F+VLYP+G+TGE+ +Y ALP +KK +++ +PNK NF+F +Y +
Sbjct: 730 PYIIKWARYTLFIVLYPMGVTGELLTIYAALPTVKKTGLYSISLPNKYNFSFDYYTFLIL 909
Query: 122 ILLGVYPYGSYVMYSYMLAQRRKM 145
+++ P +Y +M QRRK+
Sbjct: 910 VMMSYIPIFPQ-LYFHMFHQRRKV 978
>gb|BC112557.1| Bos taurus protein tyrosine phosphatase-like (proline instead of
catalytic arginine), member b, mRNA (cDNA clone
MGC:137422 IMAGE:8022369), complete cds
Length = 1005
Score = 96.3 bits (238), Expect = 3e-18, Method: Composition-based stats.
Identities = 53/145 (36%), Positives = 91/145 (62%)
Frame = +1
Query: 2 SPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNTT 61
S V T +QV+SR+ +++ AV E + + V+AW ++E+IRYSFY +LLN
Sbjct: 385 SSVVLTSIQVMSRVFLIW-AVTHSVKEVQSEDSVLLFVIAWTITEIIRYSFYTFSLLNHL 561
Query: 62 APPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSVWF 121
+ W RY+ F+VLYP+G++GE+ +Y ALP++++ +++ +PNK NF+F +Y +
Sbjct: 562 PYLIKWARYTLFIVLYPMGVSGELLTIYAALPFVRQAGLYSISLPNKYNFSFDYYAFLIL 741
Query: 122 ILLGVYPYGSYVMYSYMLAQRRKMF 146
I++ P +Y +M+ QRRK+
Sbjct: 742 IMISYIPLFPQ-LYFHMIHQRRKIL 813
>ref|XM_002064547.1| Drosophila willistoni GK23928 (Dwil\GK23928), mRNA
Length = 750
Score = 96.3 bits (238), Expect = 3e-18, Method: Composition-based stats.
Identities = 46/106 (43%), Positives = 70/106 (66%)
Frame = +1
Query: 41 AWCLSEVIRYSFYGANLLNTTAPPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKP 100
AW ++E+IRY +Y N++ + +LRY+ F+ LYP+G+TGE+ C + A Y K+H
Sbjct: 382 AWAITEIIRYGYYALNIVKVVPHFVVFLRYTTFIALYPIGVTGELLCFWWAQSYAKEHSV 561
Query: 101 WTVEMPNKLNFTFSWYNSVWFILLGVYPYGSYVMYSYMLAQRRKMF 146
W+VEMPNK N TFS++ +W ++LG P +Y +M AQRRK+
Sbjct: 562 WSVEMPNKWNATFSYFTLLWIVMLGYIPIFPQ-LYLHMFAQRRKIL 696
>emb|CU687459.1| Synthetic construct Homo sapiens gateway clone IMAGE:100021127 3'
read PTPLB mRNA
Length = 1070
Score = 96.3 bits (238), Expect = 3e-18, Method: Composition-based stats.
Identities = 53/145 (36%), Positives = 90/145 (62%)
Frame = -3
Query: 2 SPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNTT 61
S V T QV+SR+ +++ AV E + + V+AW ++E+IRYSFY +LLN
Sbjct: 477 SSVVLTSFQVMSRVFLIW-AVTHSVKEVQSEDSVLLFVIAWTITEIIRYSFYTFSLLNHL 301
Query: 62 APPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSVWF 121
+ W RY+ F+VLYP+G++GE+ +Y ALP++++ +++ +PNK NF+F +Y +
Sbjct: 300 PYLIKWARYTLFIVLYPMGVSGELLTIYAALPFVRQAGLYSISLPNKYNFSFDYYAFLIL 121
Query: 122 ILLGVYPYGSYVMYSYMLAQRRKMF 146
I++ P +Y +M+ QRRK+
Sbjct: 120 IMISYIPIFPQ-LYFHMIHQRRKIL 49
>dbj|AK236113.1| Sus scrofa mRNA, clone:OVRM10153D07, expressed in ovary
Length = 885
Score = 95.9 bits (237), Expect = 3e-18, Method: Composition-based stats.
Identities = 53/145 (36%), Positives = 90/145 (62%)
Frame = +3
Query: 2 SPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNTT 61
S V T QV+SR+ +++ AV E + + VVAW ++E+IRYSFY +LLN
Sbjct: 360 SSVVLTSFQVMSRVFLIW-AVTHSVKEVQSEDSVLLFVVAWTITEIIRYSFYTFSLLNHL 536
Query: 62 APPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSVWF 121
+ W RY+ F+VLYP+G++GE+ +Y ALP++++ +++ +PNK NF+F +Y +
Sbjct: 537 PYLIKWARYTLFIVLYPMGVSGELLTVYAALPFVRQAGLYSISLPNKYNFSFDYYTFLIL 716
Query: 122 ILLGVYPYGSYVMYSYMLAQRRKMF 146
+++ P +Y +M+ QRRK+
Sbjct: 717 MMISYIPIFPQ-LYFHMIHQRRKVL 788
>gb|AY222959.1| Schistosoma japonicum clone ZZZ308 mRNA sequence
Length = 782
Score = 95.9 bits (237), Expect = 3e-18, Method: Composition-based stats.
Identities = 55/146 (37%), Positives = 93/146 (63%)
Frame = +3
Query: 1 RSPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNT 60
RS V TT++Q+ SR++V++G + + S + ++W ++E+IRYS+Y A++
Sbjct: 210 RSSVITTVMQISSRVLVVWGILYMVPEVGLHSWGVPLIAISWSVAEMIRYSYYMADICGA 389
Query: 61 TAPPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSVW 120
LTWLRYSAFM+LYP GI GE+ + A+ + + + ++ +PN LN +FS++ V
Sbjct: 390 KLYLLTWLRYSAFMILYPTGIFGEVLLIVNAIKKLIETEKYSFNLPNALNCSFSYW-FVL 566
Query: 121 FILLGVYPYGSYVMYSYMLAQRRKMF 146
++L Y GS VMY++M+ QRR++
Sbjct: 567 VVILVTYIPGSKVMYTHMMYQRRRVL 644
>emb|BX035980.1|CNS08ZXC Single read from an extremity of a full-length cDNA clone made from
Anopheles gambiae total adult females. 3-PRIME end of
clone FK0AAA7CC11 of strain 6-9 of Anopheles gambiae
(African malaria mosquito)
Length = 986
Score = 95.9 bits (237), Expect = 4e-18, Method: Composition-based stats.
Identities = 57/143 (39%), Positives = 88/143 (61%)
Frame = -1
Query: 2 SPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNTT 61
+PV TT QVLSR++V+ G V + S ++AW ++E+IRY++Y NL++
Sbjct: 827 NPVITTF-QVLSRVMVVCGVV-MATPTGKVSPGLPLAILAWSVTEIIRYAYYALNLIDAV 654
Query: 62 APPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSVWF 121
L +LRY+ F+VLYP G+TGE+ C + A ++ K W++EMPN NFTFS+ +W
Sbjct: 653 PQLLIFLRYTTFIVLYPTGVTGELLCFFWAQSHVANTKQWSIEMPNTYNFTFSYLFFLWA 474
Query: 122 ILLGVYPYGSYVMYSYMLAQRRK 144
++L P +Y +M AQR+K
Sbjct: 473 VMLLYIPLFPQ-LYLHMFAQRKK 408
>gb|BC027289.1| Mus musculus protein tyrosine phosphatase-like (proline instead of
catalytic arginine), member b, mRNA (cDNA clone MGC:6798
IMAGE:2647850), complete cds
Length = 985
Score = 95.9 bits (237), Expect = 4e-18, Method: Composition-based stats.
Identities = 53/145 (36%), Positives = 90/145 (62%)
Frame = +1
Query: 2 SPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNTT 61
S V T QV+SR+ +++ AV E + + V+AW ++E+IRYSFY +LLN
Sbjct: 340 SSVVLTSFQVMSRVFLIW-AVTHSVKEVQSEDSVLLFVIAWTITEIIRYSFYTFSLLNHL 516
Query: 62 APPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSVWF 121
+ W RY+ F+VLYP+G+TGE+ +Y ALP++++ +++ +PNK NF+F ++ +
Sbjct: 517 PYIIKWARYTLFIVLYPMGVTGELLTIYAALPFVRQAGLYSISLPNKYNFSFDYHAFLIL 696
Query: 122 ILLGVYPYGSYVMYSYMLAQRRKMF 146
I++ P +Y +M+ QRRK+
Sbjct: 697 IMISYIPLFPQ-LYFHMIHQRRKVL 768
>ref|XM_001113078.1| PREDICTED: Macaca mulatta similar to protein tyrosine
phosphatase-like (proline instead of catalytic
arginine), member b (LOC715374), mRNA
Length = 4269
Score = 95.5 bits (236), Expect = 4e-18, Method: Composition-based stats.
Identities = 52/145 (35%), Positives = 90/145 (62%)
Frame = +3
Query: 2 SPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNTT 61
S V T QV+SR+ +++ AV E + + V+AW ++E+IRYSFY +LLN
Sbjct: 465 SSVVLTSFQVMSRVFLIW-AVTHSVKEVQSEDSVLLFVIAWTITEIIRYSFYTFSLLNHL 641
Query: 62 APPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSVWF 121
+ W RY+ F+VLYP+G++GE+ +Y ALP++++ +++ +PNK NF+F ++ +
Sbjct: 642 PYLIKWARYTLFIVLYPMGVSGELLTIYAALPFVRQAGLYSISLPNKYNFSFDYHAFLIL 821
Query: 122 ILLGVYPYGSYVMYSYMLAQRRKMF 146
I++ P +Y +M+ QRRK+
Sbjct: 822 IMISYIPIFPQ-LYFHMIHQRRKIL 893
>ref|XM_002052314.1| Drosophila virilis GJ22182 (Dvir\GJ22182), mRNA
Length = 723
Score = 95.5 bits (236), Expect = 5e-18, Method: Composition-based stats.
Identities = 47/106 (44%), Positives = 70/106 (66%)
Frame = +1
Query: 41 AWCLSEVIRYSFYGANLLNTTAPPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKP 100
AW ++E+IRY FY N++ + +LRY+ F+ LYP+G+TGE+ C + A Y K+H
Sbjct: 379 AWAITEIIRYGFYALNIIKVVPKFVVFLRYTTFIGLYPIGVTGELLCFWWAQRYAKEHSV 558
Query: 101 WTVEMPNKLNFTFSWYNSVWFILLGVYPYGSYVMYSYMLAQRRKMF 146
W++EMPNKLN TFS+Y +W ++LG P +Y +M A RRK+
Sbjct: 559 WSLEMPNKLNATFSYYALLWIVMLGYIPIFPQ-LYLHMFALRRKIL 693
>gb|BC078103.1| Xenopus laevis MGC83576 protein, mRNA (cDNA clone MGC:83576
IMAGE:5079563), complete cds
Length = 2554
Score = 95.5 bits (236), Expect = 5e-18, Method: Composition-based stats.
Identities = 56/144 (38%), Positives = 87/144 (60%)
Frame = +2
Query: 2 SPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNTT 61
S V T QV+SR+ + + AV E + + VVAW ++E+IRYSFY +LLN
Sbjct: 347 SSVVLTAFQVMSRVFLTW-AVTHSVREVQNEDSVLLFVVAWTITEIIRYSFYTFSLLNHL 523
Query: 62 APPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSVWF 121
+ W RY+ F+VLYP+G+TGE+ +Y ALP +KK +++ +PNK NF+F +Y +
Sbjct: 524 PYIIKWARYTLFIVLYPMGVTGELLTIYAALPTVKKTGLYSISLPNKYNFSFDYYTFLIL 703
Query: 122 ILLGVYPYGSYVMYSYMLAQRRKM 145
+++ P +Y +M QRRK+
Sbjct: 704 VMVSYIPIFPQ-LYFHMFHQRRKV 772
>ref|XR_054050.1| PREDICTED: Taeniopygia guttata misc_RNA (LOC100223714), miscRNA
Length = 1463
Score = 95.5 bits (236), Expect = 5e-18, Method: Composition-based stats.
Identities = 54/145 (37%), Positives = 89/145 (61%)
Frame = +3
Query: 2 SPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNTT 61
S V T QV+SR+ + + AV E + + VVAW ++E+IRYSFY +LLN
Sbjct: 273 SSVVLTAFQVMSRVFLTW-AVTHSVKEVQSEDSVLLFVVAWTITEIIRYSFYTFSLLNHL 449
Query: 62 APPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSVWF 121
+ W RY+ F+VLYP+G++GE+ +Y ALP++++ +++ +PNK NF+F +Y +
Sbjct: 450 PYLIKWARYTLFIVLYPMGVSGELLTIYAALPFVRQSGLYSISLPNKYNFSFDYYTFLIL 629
Query: 122 ILLGVYPYGSYVMYSYMLAQRRKMF 146
+++ P +Y +ML QRRK+
Sbjct: 630 VMISYIPIFPQ-LYFHMLHQRRKVL 701
>ref|XM_001372372.1| PREDICTED: Monodelphis domestica similar to protein tyrosine
phosphatase-like member b (LOC100019614), mRNA
Length = 1395
Score = 95.5 bits (236), Expect = 6e-18, Method: Composition-based stats.
Identities = 48/130 (36%), Positives = 81/130 (62%)
Frame = +1
Query: 2 SPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNTT 61
S V T QV+SR+ +++ AV E + + V+AW ++E+IRYSFY +LLN
Sbjct: 790 SSVVLTSFQVMSRVFLIW-AVTHSVKEVQSEDSVLLFVIAWTVTEIIRYSFYTFSLLNHL 966
Query: 62 APPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSVWF 121
+ W RY+ F+VLYP+G++GE+ +Y ALP++++ +++ +PNK NF+F +Y +
Sbjct: 967 PYIIKWARYTLFIVLYPMGVSGELLTIYAALPFVRQANLYSISLPNKYNFSFDYYAFLIL 1146
Query: 122 ILLGVYPYGS 131
I++ P S
Sbjct: 1147IMISYIPRSS 1176
>ref|NM_072339.4| Caenorhabditis elegans hypothetical protein (T15B7.2) mRNA,
complete cds
Length = 788
Score = 95.1 bits (235), Expect = 6e-18, Method: Composition-based stats.
Identities = 60/149 (40%), Positives = 95/149 (63%), Gaps = 3/149 (2%)
Frame = +2
Query: 1 RSPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNT 60
RSPVGTT +QV SR+++++ + L T A S+ ++VAW ++EVIRYSFY ++L
Sbjct: 236 RSPVGTTAMQVTSRVVLVWPILHLCST-ARFSIGVPLLLVAWSVTEVIRYSFYALSVLKQ 412
Query: 61 TAPP-LTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSV 119
P L +LRY+ F VLYP+G++GE+ L+ +L + + K T+EMPN+LN S++
Sbjct: 413 PIPYFLLYLRYTLFYVLYPMGVSGELLTLFASLNEVDEKKILTLEMPNRLNMGISFW--- 583
Query: 120 WFILLGVYPY--GSYVMYSYMLAQRRKMF 146
W +++ Y G +Y YM+ QR+K+
Sbjct: 584 WVLIIAALSYIPGFPQLYFYMIGQRKKIL 670
>emb|AJ720797.1| Gallus gallus mRNA for hypothetical protein, clone 25n2
Length = 4553
Score = 95.1 bits (235), Expect = 6e-18, Method: Composition-based stats.
Identities = 53/145 (36%), Positives = 89/145 (61%)
Frame = +1
Query: 2 SPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNTT 61
S V T QV+SR+ + + AV E + + VVAW ++E+IRYSFY +LLN
Sbjct: 478 SSVVLTAFQVMSRVFLTW-AVTHSVKEVQTEDSVLLFVVAWTITEIIRYSFYTFSLLNHL 654
Query: 62 APPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSVWF 121
+ W RY+ F++LYP+G++GE+ +Y ALP++++ +++ +PNK NF+F +Y +
Sbjct: 655 PYLIKWARYTLFIILYPMGVSGELLTIYAALPFVRQSGLYSISLPNKYNFSFDYYTFLIL 834
Query: 122 ILLGVYPYGSYVMYSYMLAQRRKMF 146
+++ P +Y +ML QRRK+
Sbjct: 835 VMISYIPLFPQ-LYFHMLRQRRKVL 906
>ref|XM_001757939.1| Physcomitrella patens subsp. patens predicted protein
(PHYPADRAFT_205799) mRNA, complete cds
Length = 1000
Score = 94.7 bits (234), Expect = 8e-18, Method: Composition-based stats.
Identities = 57/144 (39%), Positives = 87/144 (60%), Gaps = 1/144 (0%)
Frame = +2
Query: 2 SPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNTT 61
SPV TL Q+ SR+ + +G V + ++++W ++EVIRYSF+G + +
Sbjct: 290 SPVTATLPQISSRVFITWG-VLFSFPQVRDHWLVTSLILSWAVTEVIRYSFFGLKEVFGS 466
Query: 62 APP-LTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSVW 120
P L WLRY+ F VLYP GI E G ++ ALP++K+ +++ MPNK+NF F +Y +
Sbjct: 467 PPRFLLWLRYTTFYVLYPTGICSEAGLIFVALPFMKETGLYSLRMPNKMNFGFDYYYASI 646
Query: 121 FILLGVYPYGSYVMYSYMLAQRRK 144
+L P GS MYS+M+ QR+K
Sbjct: 647 LAILAYIP-GSPGMYSHMIRQRKK 715
>ref|XM_001603034.1| PREDICTED: Nasonia vitripennis similar to GA19829-PA
(LOC100119292), mRNA
Length = 966
Score = 94.7 bits (234), Expect = 8e-18, Method: Composition-based stats.
Identities = 59/147 (40%), Positives = 88/147 (59%), Gaps = 2/147 (1%)
Frame = +1
Query: 2 SPVGTTLLQVLSRLIVLYGAV-RLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNT 60
+PV TT QVLSR++V+ G + + A S ++AW ++E+IRY +Y ANL+
Sbjct: 244 NPVLTTF-QVLSRVVVVCGVILATPRSYAAASSGLPLALIAWSITEIIRYGYYFANLIKV 420
Query: 61 TAPPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHK-PWTVEMPNKLNFTFSWYNSV 119
L WLRY+ F+ LYP+GITGE+ C Y A Y HK W+ +PN NFT S++ ++
Sbjct: 421 VPHFLVWLRYTLFIALYPIGITGELLCFYAATQYAHAHKTAWSYVLPNAWNFTLSYHYAL 600
Query: 120 WFILLGVYPYGSYVMYSYMLAQRRKMF 146
I+L P + +Y +M +QRRK+
Sbjct: 601 VSIMLLYIPLFPH-LYLHMFSQRRKIL 678
>gb|BC077839.1| Xenopus laevis protein tyrosine phosphatase-like (proline instead
of catalytic arginine), member b, mRNA (cDNA clone
MGC:80527 IMAGE:5157288), complete cds
Length = 3080
Score = 94.7 bits (234), Expect = 9e-18, Method: Composition-based stats.
Identities = 55/144 (38%), Positives = 86/144 (59%)
Frame = +2
Query: 2 SPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNTT 61
S V T QV+SR+ + + AV E + + V AW ++E+IRYSFY +LLN
Sbjct: 386 SSVVLTAFQVMSRVFLTW-AVTHSVKEVQNEDSVLLFVAAWTITEIIRYSFYTFSLLNHL 562
Query: 62 APPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSVWF 121
+ W RY+ F+VLYP+G+TGE+ +Y ALP +KK +++ +PNK NF+F +Y +
Sbjct: 563 PYIIKWARYTLFIVLYPMGVTGELLTIYAALPTVKKTGLYSISLPNKYNFSFDYYTFLIL 742
Query: 122 ILLGVYPYGSYVMYSYMLAQRRKM 145
+++ P +Y +M QRRK+
Sbjct: 743 VMISYIPIFPQ-LYFHMFHQRRKV 811
>dbj|AK018144.1| Mus musculus adult male medulla oblongata cDNA, RIKEN full-length
enriched library, clone:6330408J20 product:PROTEIN
TYROSINE PHOSPHATASE-LIKE PROTEIN PTPLB homolog [Mus
musculus], full insert sequence
Length = 881
Score = 94.7 bits (234), Expect = 9e-18, Method: Composition-based stats.
Identities = 53/145 (36%), Positives = 90/145 (62%)
Frame = +2
Query: 2 SPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNTT 61
S V T QV+SR+ +++ AV E + + V+AW ++E+IRYSFY +LLN
Sbjct: 326 SSVVLTSFQVMSRVFLIW-AVTHSVKEVQSEDSVLLFVIAWTITEIIRYSFYTFSLLNHL 502
Query: 62 APPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSVWF 121
+ W RY+ F+VLYP+G+TGE+ +Y ALP++++ +++ +PNK NF+F ++ +
Sbjct: 503 PYIIKWARYTLFIVLYPMGVTGELLTIYAALPFVRQAGLYSISLPNKYNFSFDYHAFLIL 682
Query: 122 ILLGVYPYGSYVMYSYMLAQRRKMF 146
I++ P +Y +M+ QRRK+
Sbjct: 683 IMISYIPLFPQ-LYFHMIHQRRKVL 754
>ref|NM_023587.2| Mus musculus protein tyrosine phosphatase-like (proline instead of
catalytic arginine), member b (Ptplb), mRNA
Length = 3603
Score = 94.7 bits (234), Expect = 9e-18, Method: Composition-based stats.
Identities = 53/145 (36%), Positives = 90/145 (62%)
Frame = +1
Query: 2 SPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNTT 61
S V T QV+SR+ +++ AV E + + V+AW ++E+IRYSFY +LLN
Sbjct: 364 SSVVLTSFQVMSRVFLIW-AVTHSVKEVQSEDSVLLFVIAWTITEIIRYSFYTFSLLNHL 540
Query: 62 APPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSVWF 121
+ W RY+ F+VLYP+G+TGE+ +Y ALP++++ +++ +PNK NF+F ++ +
Sbjct: 541 PYIIKWARYTLFIVLYPMGVTGELLTIYAALPFVRQAGLYSISLPNKYNFSFDYHAFLIL 720
Query: 122 ILLGVYPYGSYVMYSYMLAQRRKMF 146
I++ P +Y +M+ QRRK+
Sbjct: 721 IMISYIPLFPQ-LYFHMIHQRRKVL 792
>gb|BC165084.1| Danio rerio protein tyrosine phosphatase-like (proline instead of
catalytic arginine), member b, mRNA (cDNA clone
MGC:192259 IMAGE:100060568), complete cds
Length = 787
Score = 94.4 bits (233), Expect = 1e-17, Method: Composition-based stats.
Identities = 54/145 (37%), Positives = 89/145 (61%)
Frame = +2
Query: 2 SPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNTT 61
S V T QV+SR+ + + AV E + + VVAW ++E+IRYSFY +LLN
Sbjct: 293 SSVVLTGFQVMSRVFLTW-AVTHSVREVQSEDSVLLFVVAWTVTEIIRYSFYTFSLLNHL 469
Query: 62 APPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSVWF 121
+ W RY+ F+VLYP+G+ GE+ +Y ALPY++K +++ +PNK NF+F ++ + F
Sbjct: 470 PYLIKWARYTFFIVLYPMGVMGELLTIYAALPYVQKAGLYSITLPNKYNFSFDYHTFLIF 649
Query: 122 ILLGVYPYGSYVMYSYMLAQRRKMF 146
+++ P +Y +M+ QR+K+
Sbjct: 650 VMISYIPLFPQ-LYFHMMRQRKKVL 721
>gb|BC131901.1| Mus musculus protein tyrosine phosphatase-like (proline instead of
catalytic arginine), member b, mRNA (cDNA clone
MGC:163532 IMAGE:40130178), complete cds
Length = 841
Score = 94.4 bits (233), Expect = 1e-17, Method: Composition-based stats.
Identities = 53/145 (36%), Positives = 90/145 (62%)
Frame = +1
Query: 2 SPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNTT 61
S V T QV+SR+ +++ AV E + + V+AW ++E+IRYSFY +LLN
Sbjct: 355 SSVVLTSFQVMSRVFLIW-AVTHSVKEVQSEDSVLLFVIAWTITEIIRYSFYTFSLLNHL 531
Query: 62 APPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSVWF 121
+ W RY+ F+VLYP+G+TGE+ +Y ALP++++ +++ +PNK NF+F ++ +
Sbjct: 532 PYIIKWARYTLFIVLYPMGVTGELLTIYAALPFVRQAGLYSISLPNKYNFSFDYHAFLIL 711
Query: 122 ILLGVYPYGSYVMYSYMLAQRRKMF 146
I++ P +Y +M+ QRRK+
Sbjct: 712 IMISYIPLFPQ-LYFHMIHQRRKVL 783
>gb|BC131899.1| Mus musculus protein tyrosine phosphatase-like (proline instead of
catalytic arginine), member b, mRNA (cDNA clone
MGC:163530 IMAGE:40130176), complete cds
Length = 841
Score = 94.4 bits (233), Expect = 1e-17, Method: Composition-based stats.
Identities = 53/145 (36%), Positives = 90/145 (62%)
Frame = +1
Query: 2 SPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNTT 61
S V T QV+SR+ +++ AV E + + V+AW ++E+IRYSFY +LLN
Sbjct: 355 SSVVLTSFQVMSRVFLIW-AVTHSVKEVQSEDSVLLFVIAWTITEIIRYSFYTFSLLNHL 531
Query: 62 APPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSVWF 121
+ W RY+ F+VLYP+G+TGE+ +Y ALP++++ +++ +PNK NF+F ++ +
Sbjct: 532 PYIIKWARYTLFIVLYPMGVTGELLTIYAALPFVRQAGLYSISLPNKYNFSFDYHAFLIL 711
Query: 122 ILLGVYPYGSYVMYSYMLAQRRKMF 146
I++ P +Y +M+ QRRK+
Sbjct: 712 IMISYIPLFPQ-LYFHMIHQRRKVL 783
>ref|XM_002131002.1| PREDICTED: Ciona intestinalis similar to protein tyrosine
phosphatase-like (proline instead of catalytic
arginine), member b (LOC100184399), mRNA
Length = 1542
Score = 94.4 bits (233), Expect = 1e-17, Method: Composition-based stats.
Identities = 57/149 (38%), Positives = 94/149 (63%), Gaps = 5/149 (3%)
Frame = +1
Query: 1 RSPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNT 60
RS V T LQV SR+ +++G ++ + +++AW ++E+IRY FY LL
Sbjct: 259 RSNVMLTTLQVFSRVGIVWGVIQ-PVVQVHDKEGIPMVLIAWTITEIIRYLFYTFVLLGV 435
Query: 61 TAPPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSVW 120
T + WLRY+ F+VLYP+G+TGE+ LY +LP+++ +++ +PN LNF+F++Y
Sbjct: 436 TPKVMLWLRYTLFIVLYPLGVTGELLSLYYSLPHVQNSGLYSLYLPNNLNFSFNYY---- 603
Query: 121 FILLGVYPYGSYV-----MYSYMLAQRRK 144
++LLG++P YV +Y +M AQR+K
Sbjct: 604 YVLLGMFPV--YVIFFPQLYFHMFAQRKK 684
>gb|FJ638634.1| Synthetic construct Drosophila melanogaster clone BO06088 encodes
CG6746-RA
Length = 769
Score = 94.0 bits (232), Expect = 1e-17, Method: Composition-based stats.
Identities = 44/108 (40%), Positives = 72/108 (66%)
Frame = +2
Query: 39 VVAWCLSEVIRYSFYGANLLNTTAPPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKH 98
++AW ++E+IRY +Y N++ + +LRY+ F+VLYP+G+TGE+ C + A Y +++
Sbjct: 392 LLAWAITEIIRYGYYALNIVKVVPHFVVFLRYTTFIVLYPIGVTGELLCFWWAQSYAREN 571
Query: 99 KPWTVEMPNKLNFTFSWYNSVWFILLGVYPYGSYVMYSYMLAQRRKMF 146
W+V MPNK N TFS++ +W ++LG P +Y +M AQRRK+
Sbjct: 572 SVWSVVMPNKWNATFSYFGFLWIVMLGYIPIFPQ-LYLHMFAQRRKIL 712
>gb|BC093477.1| Xenopus laevis cDNA clone MGC:98540 IMAGE:7199090, complete cds
Length = 3465
Score = 94.0 bits (232), Expect = 1e-17, Method: Composition-based stats.
Identities = 53/145 (36%), Positives = 90/145 (62%)
Frame = -3
Query: 2 SPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNTT 61
S V T QV+SR+ +++ AV E + + V+AW ++E+IRYSFY +LLN
Sbjct: 3241 SSVVLTSFQVMSRVFLIW-AVTHSVKEVQSEDSVLLFVIAWTITEIIRYSFYTFSLLNHL 3065
Query: 62 APPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSVWF 121
+ W RY+ F+VLYP+G+TGE+ +Y ALP++++ +++ +PNK NF+F ++ +
Sbjct: 3064 PYIIKWARYTLFIVLYPMGVTGELLTIYAALPFVRQAGLYSISLPNKYNFSFDYHAFLIL 2885
Query: 122 ILLGVYPYGSYVMYSYMLAQRRKMF 146
I++ P +Y +M+ QRRK+
Sbjct: 2884 IMISYIPLFPQ-LYFHMIHQRRKVL 2813
>emb|CT837241.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA118E08, full
insert sequence
Length = 1194
Score = 94.0 bits (232), Expect = 1e-17, Method: Composition-based stats.
Identities = 59/148 (39%), Positives = 91/148 (61%), Gaps = 3/148 (2%)
Frame = +3
Query: 1 RSPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNT 60
RS TL QVLSRLIV++ V +A SL F + +AW ++E++RYS+Y NL+N
Sbjct: 477 RSNPILTLFQVLSRLIVVW-LVCYPFKDAKNSLGFSLVCIAWPIAEIVRYSYYAFNLINF 653
Query: 61 TAPPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKK---HKPWTVEMPNKLNFTFSWYN 117
+TW RY+ F++LYP+G+TGE+ C+Y+A Y+ K ++ +PNK N +F Y
Sbjct: 654 VPSFITWCRYTFFIILYPLGVTGELICIYRAFEYVAPLNIRKQYSYFLPNKYNVSFDAYY 833
Query: 118 SVWFILLGVYPYGSYVMYSYMLAQRRKM 145
S + ++L P +Y +ML QR+K+
Sbjct: 834 SFFIVMLLYIPIFPK-LYGHMLVQRKKI 914
>emb|CR858641.1| Pongo abelii mRNA; cDNA DKFZp469O0115 (from clone DKFZp469O0115)
Length = 4131
Score = 94.0 bits (232), Expect = 1e-17, Method: Composition-based stats.
Identities = 53/145 (36%), Positives = 90/145 (62%)
Frame = +1
Query: 2 SPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNTT 61
S V T QV+SR+ +++ AV E + + V+AW ++E+IRYSFY +LLN
Sbjct: 322 SSVVLTSFQVMSRVFLIW-AVTHSVKEVQSEDSVLLFVIAWTITEIIRYSFYTFSLLNHL 498
Query: 62 APPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSVWF 121
+ W RY+ F+VLYP+G++GE+ +Y ALP++++ +++ +PNK NF+F +Y +
Sbjct: 499 PYLIKWARYTLFIVLYPMGVSGELLTIYAALPFVRQAGLYSISLPNKYNFSFDYYAFLIL 678
Query: 122 ILLGVYPYGSYVMYSYMLAQRRKMF 146
I++ P +Y +M+ QRRK+
Sbjct: 679 IMISYIPIFPQ-LYFHMIHQRRKIL 750
>emb|CU687458.1| Synthetic construct Homo sapiens gateway clone IMAGE:100021127 5'
read PTPLB mRNA
Length = 1198
Score = 94.0 bits (232), Expect = 1e-17, Method: Composition-based stats.
Identities = 53/143 (37%), Positives = 89/143 (62%)
Frame = +2
Query: 2 SPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNTT 61
S V T QV+SR+ +++ AV E + + V+AW ++E+IRYSFY +LLN
Sbjct: 320 SSVVLTSFQVMSRVFLIW-AVTHSVKEVQSEDSVLLFVIAWTITEIIRYSFYTFSLLNHL 496
Query: 62 APPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSVWF 121
+ W RY+ F+VLYP+G++GE+ +Y ALP++++ +++ +PNK NF+F +Y +
Sbjct: 497 PYLIKWARYTLFIVLYPMGVSGELLTIYAALPFVRQAGLYSISLPNKYNFSFDYYAFLIL 676
Query: 122 ILLGVYPYGSYVMYSYMLAQRRK 144
I++ P +Y +M+ QRRK
Sbjct: 677 IMISYIPIFPQ-LYFHMIHQRRK 742
>dbj|AK289983.1| Homo sapiens cDNA FLJ77861 complete cds
Length = 1187
Score = 93.6 bits (231), Expect = 2e-17, Method: Composition-based stats.
Identities = 53/145 (36%), Positives = 90/145 (62%)
Frame = +3
Query: 2 SPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNTT 61
S V T QV+SR+ +++ AV E + + V+AW ++E+IRYSFY +LLN
Sbjct: 354 SSVVLTSFQVMSRVFLIW-AVTHSVKEVQSEDSVLLFVIAWTITEIIRYSFYTFSLLNHL 530
Query: 62 APPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSVWF 121
+ W RY+ F+VLYP+G++GE+ +Y ALP++++ +++ +PNK NF+F +Y +
Sbjct: 531 PYLIKWARYTLFIVLYPMGVSGELLTIYAALPFVRQAGLYSISLPNKYNFSFDYYAFLIL 710
Query: 122 ILLGVYPYGSYVMYSYMLAQRRKMF 146
I++ P +Y +M+ QRRK+
Sbjct: 711 IMISYIPIFPQ-LYFHMIHQRRKIL 782
>ref|XM_001168034.1| PREDICTED: Pan troglodytes similar to Protein tyrosine
phosphatase-like (proline instead of catalytic
arginine), member b (LOC746499), mRNA
Length = 4259
Score = 93.6 bits (231), Expect = 2e-17, Method: Composition-based stats.
Identities = 53/145 (36%), Positives = 90/145 (62%)
Frame = +3
Query: 2 SPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNTT 61
S V T QV+SR+ +++ AV E + + V+AW ++E+IRYSFY +LLN
Sbjct: 468 SSVVLTSFQVMSRVFLIW-AVTHSVKEVQSEDSVLLFVIAWTITEIIRYSFYTFSLLNHL 644
Query: 62 APPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSVWF 121
+ W RY+ F+VLYP+G++GE+ +Y ALP++++ +++ +PNK NF+F +Y +
Sbjct: 645 PYLIKWARYTLFIVLYPMGVSGELLTIYAALPFVRQAGLYSISLPNKYNFSFDYYAFLIL 824
Query: 122 ILLGVYPYGSYVMYSYMLAQRRKMF 146
I++ P +Y +M+ QRRK+
Sbjct: 825 IMISYIPIFPQ-LYFHMIHQRRKIL 896
>gb|AY191814.1| Homo sapiens protein tyrosine phosphatase-like member b (PTPLB)
mRNA, complete cds
Length = 4296
Score = 93.6 bits (231), Expect = 2e-17, Method: Composition-based stats.
Identities = 53/145 (36%), Positives = 90/145 (62%)
Frame = +1
Query: 2 SPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNTT 61
S V T QV+SR+ +++ AV E + + V+AW ++E+IRYSFY +LLN
Sbjct: 466 SSVVLTSFQVMSRVFLIW-AVTHSVKEVQSEDSVLLFVIAWTITEIIRYSFYTFSLLNHL 642
Query: 62 APPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSVWF 121
+ W RY+ F+VLYP+G++GE+ +Y ALP++++ +++ +PNK NF+F +Y +
Sbjct: 643 PYLIKWARYTLFIVLYPMGVSGELLTIYAALPFVRQAGLYSISLPNKYNFSFDYYAFLIL 822
Query: 122 ILLGVYPYGSYVMYSYMLAQRRKMF 146
I++ P +Y +M+ QRRK+
Sbjct: 823 IMISYIPIFPQ-LYFHMIHQRRKIL 894
>dbj|AK125375.1| Homo sapiens cDNA FLJ43385 fis, clone OCBBF2006151, highly similar
to Mus musculus protein tyrosine phosphatase-like
protein PTPLB (Ptplb) mRNA
Length = 2461
Score = 93.6 bits (231), Expect = 2e-17, Method: Composition-based stats.
Identities = 53/145 (36%), Positives = 90/145 (62%)
Frame = +2
Query: 2 SPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNTT 61
S V T QV+SR+ +++ AV E + + V+AW ++E+IRYSFY +LLN
Sbjct: 356 SSVVLTSFQVMSRVFLIW-AVTHSVKEVQSEDSVLLFVIAWTITEIIRYSFYTFSLLNHL 532
Query: 62 APPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSVWF 121
+ W RY+ F+VLYP+G++GE+ +Y ALP++++ +++ +PNK NF+F +Y +
Sbjct: 533 PYLIKWARYTLFIVLYPMGVSGELLTIYAALPFVRQAGLYSISLPNKYNFSFDYYAFLIL 712
Query: 122 ILLGVYPYGSYVMYSYMLAQRRKMF 146
I++ P +Y +M+ QRRK+
Sbjct: 713 IMISYIPIFPQ-LYFHMIHQRRKIL 784
>gb|BC060839.1| Homo sapiens protein tyrosine phosphatase-like (proline instead of
catalytic arginine), member b, mRNA (cDNA clone
MGC:71739 IMAGE:5273705), complete cds
Length = 4169
Score = 93.6 bits (231), Expect = 2e-17, Method: Composition-based stats.
Identities = 53/145 (36%), Positives = 90/145 (62%)
Frame = +2
Query: 2 SPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNTT 61
S V T QV+SR+ +++ AV E + + V+AW ++E+IRYSFY +LLN
Sbjct: 356 SSVVLTSFQVMSRVFLIW-AVTHSVKEVQSEDSVLLFVIAWTITEIIRYSFYTFSLLNHL 532
Query: 62 APPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSVWF 121
+ W RY+ F+VLYP+G++GE+ +Y ALP++++ +++ +PNK NF+F +Y +
Sbjct: 533 PYLIKWARYTLFIVLYPMGVSGELLTIYAALPFVRQAGLYSISLPNKYNFSFDYYAFLIL 712
Query: 122 ILLGVYPYGSYVMYSYMLAQRRKMF 146
I++ P +Y +M+ QRRK+
Sbjct: 713 IMISYIPIFPQ-LYFHMIHQRRKIL 784
>gb|BC049369.1| Homo sapiens protein tyrosine phosphatase-like (proline instead of
catalytic arginine), member b, mRNA (cDNA clone
MGC:57203 IMAGE:5286864), complete cds
Length = 4276
Score = 93.6 bits (231), Expect = 2e-17, Method: Composition-based stats.
Identities = 53/145 (36%), Positives = 90/145 (62%)
Frame = +3
Query: 2 SPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNTT 61
S V T QV+SR+ +++ AV E + + V+AW ++E+IRYSFY +LLN
Sbjct: 462 SSVVLTSFQVMSRVFLIW-AVTHSVKEVQSEDSVLLFVIAWTITEIIRYSFYTFSLLNHL 638
Query: 62 APPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSVWF 121
+ W RY+ F+VLYP+G++GE+ +Y ALP++++ +++ +PNK NF+F +Y +
Sbjct: 639 PYLIKWARYTLFIVLYPMGVSGELLTIYAALPFVRQAGLYSISLPNKYNFSFDYYAFLIL 818
Query: 122 ILLGVYPYGSYVMYSYMLAQRRKMF 146
I++ P +Y +M+ QRRK+
Sbjct: 819 IMISYIPIFPQ-LYFHMIHQRRKIL 890
>gb|BC044396.1| Danio rerio protein tyrosine phosphatase-like (proline instead of
catalytic arginine), member b, mRNA (cDNA clone
MGC:55421 IMAGE:2639342), complete cds
Length = 2107
Score = 93.6 bits (231), Expect = 2e-17, Method: Composition-based stats.
Identities = 54/145 (37%), Positives = 89/145 (61%)
Frame = +1
Query: 2 SPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNTT 61
S V T QV+SR+ + + AV E + + VVAW ++E+IRYSFY +LLN
Sbjct: 331 SSVVLTGFQVMSRVFLTW-AVTHSVREVQSEDSVLLFVVAWTVTEIIRYSFYTFSLLNHL 507
Query: 62 APPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSVWF 121
+ W RY+ F+VLYP+G+ GE+ +Y ALPY++K +++ +PNK NF+F ++ + F
Sbjct: 508 PYLIKWARYTFFIVLYPMGVMGELLTIYAALPYVQKAGLYSITLPNKYNFSFDYHTFLIF 687
Query: 122 ILLGVYPYGSYVMYSYMLAQRRKMF 146
+++ P +Y +M+ QR+K+
Sbjct: 688 VMISYIPLFPQ-LYFHMMRQRKKVL 759
>dbj|AK148143.1| Mus musculus B16 F10Y cells cDNA, RIKEN full-length enriched
library, clone:G370033K17 product:protein tyrosine
phosphatase-like (proline instead of catalytic
arginine), member b, full insert sequence
Length = 3584
Score = 93.2 bits (230), Expect = 2e-17, Method: Composition-based stats.
Identities = 52/145 (35%), Positives = 90/145 (62%)
Frame = +2
Query: 2 SPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNTT 61
S V T QV+SR+ +++ AV E + + V+AW ++E+IRYSFY +LLN
Sbjct: 350 SSVVLTSFQVMSRVFLIW-AVTHSVKEVQSEDSVLLFVIAWTITEIIRYSFYTFSLLNHL 526
Query: 62 APPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSVWF 121
+ W RY+ F+VLYP+G+TGE+ +Y ALP++++ +++ +PNK NF+F ++ +
Sbjct: 527 PYIIKWARYTLFIVLYPMGVTGELLTIYAALPFVRQAGLYSISLPNKYNFSFDYHAFLIL 706
Query: 122 ILLGVYPYGSYVMYSYMLAQRRKMF 146
I++ P +Y +M+ +RRK+
Sbjct: 707 IMISYIPLFPQ-LYFHMIHRRRKVL 778
>ref|XM_845875.1| PREDICTED: Canis familiaris similar to protein tyrosine
phosphatase-like (proline instead of catalytic
arginine), member b (LOC608764), mRNA
Length = 651
Score = 93.2 bits (230), Expect = 2e-17, Method: Composition-based stats.
Identities = 53/145 (36%), Positives = 90/145 (62%)
Frame = +1
Query: 2 SPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNTT 61
S V T QV+SR+ +++ AV E + + V+AW ++E+IRYSFY +LLN
Sbjct: 190 SSVVLTSFQVMSRVFLIW-AVTHSVKEVQSEDSVLLFVIAWTITEIIRYSFYTFSLLNHL 366
Query: 62 APPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSVWF 121
+ W RY+ F+VLYP+G++GE+ +Y ALP++++ +++ +PNK NF+F +Y +
Sbjct: 367 PYLIKWARYTLFIVLYPMGVSGELLTIYAALPFVRQAGLYSISLPNKYNFSFDYYAFLIL 546
Query: 122 ILLGVYPYGSYVMYSYMLAQRRKMF 146
I++ P +Y +M+ QRRK+
Sbjct: 547 IMISYIPIFPQ-LYFHMIHQRRKVL 618
>ref|XM_001650239.1| Aedes aegypti ptpla domain protein partial mRNA
Length = 582
Score = 92.8 bits (229), Expect = 3e-17, Method: Composition-based stats.
Identities = 57/141 (40%), Positives = 78/141 (55%), Gaps = 1/141 (0%)
Frame = +1
Query: 7 TLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNTTAPP-L 65
TLLQV R +V+ A+ G E S + W L E IRYS+Y +L T P +
Sbjct: 139 TLLQVFGRCMVVVAAIE-GTPEGKVSPGLPIALFCWSLMETIRYSYYVLHLALTKVPFFM 315
Query: 66 TWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSVWFILLG 125
TWLRY+ F+ LYP G GE+ C Y A + ++ W++ MPN+ NFTFS+Y W + +G
Sbjct: 316 TWLRYTIFIPLYPTGFIGELLCFYWAQSHFRETDKWSLSMPNRFNFTFSFYYFAWIMSIG 495
Query: 126 VYPYGSYVMYSYMLAQRRKMF 146
P MY +M QRRK+
Sbjct: 496 YLPMFPQ-MYLHMFGQRRKIL 555
>ref|NM_001048569.1| Oryza sativa (japonica cultivar-group) Os01g0150500 (Os01g0150500)
mRNA, complete cds
Length = 747
Score = 92.8 bits (229), Expect = 3e-17, Method: Composition-based stats.
Identities = 57/146 (39%), Positives = 85/146 (58%), Gaps = 2/146 (1%)
Frame = +1
Query: 1 RSPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFV-QMVVAWCLSEVIRYSFYG-ANLL 58
RSPV +TL Q+ RL + +G L T+S FV +++ WC+ EV RYSFYG
Sbjct: 292 RSPVSSTLPQITGRLFITWGI--LWSFPETQSYIFVTSLLICWCIIEVTRYSFYGMKESF 465
Query: 59 NTTAPPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNS 118
T L WLRYS F+ +PVG+ EI Y LP++K + + + MPNK NF+F+++ +
Sbjct: 466 GFTPSWLLWLRYSTFIACFPVGVVSEICLAYTVLPFMKASEKYCLRMPNKWNFSFNYFYA 645
Query: 119 VWFILLGVYPYGSYVMYSYMLAQRRK 144
F + P Y ++ +M+AQR+K
Sbjct: 646 NVFFMAFYVPVVPY-LFHHMIAQRKK 720
>ref|XM_962730.1| PREDICTED: Tribolium castaneum similar to ptpla domain protein
(LOC656186), mRNA
Length = 879
Score = 92.8 bits (229), Expect = 3e-17, Method: Composition-based stats.
Identities = 54/140 (38%), Positives = 82/140 (58%)
Frame = +3
Query: 7 TLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNTTAPPLT 66
T +QV SR+IV+ G + L ++ + AW ++E+IRY Y NL +T
Sbjct: 327 TAMQVASRVIVVCGVI-LATKAGRETIGLHLALAAWSVTEIIRYGNYTLNLTGGVPFIVT 503
Query: 67 WLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSVWFILLGV 126
WLRY+ F+VLYP+G+TGE+ C+Y A + + K +T+EMPN LNFTF + +W ++L
Sbjct: 504 WLRYTTFIVLYPIGVTGELLCIYAAQKEVGETKIFTIEMPNALNFTFDYQKVLWGLMLLY 683
Query: 127 YPYGSYVMYSYMLAQRRKMF 146
P +Y +M RRK+
Sbjct: 684 IPLFPK-LYMHMWTLRRKVL 740
>emb|CR858033.1| Pongo abelii mRNA; cDNA DKFZp459B2333 (from clone DKFZp459B2333)
Length = 3977
Score = 92.8 bits (229), Expect = 4e-17, Method: Composition-based stats.
Identities = 54/145 (37%), Positives = 90/145 (62%)
Frame = +3
Query: 2 SPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNTT 61
S V T QV+SR+ +++ AV E + + VVAW ++E+IRYSFY +LLN
Sbjct: 153 SSVVLTSFQVMSRVFLIW-AVTHSVKEVQSEDSVLLFVVAWTITEIIRYSFYTFSLLNHL 329
Query: 62 APPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSVWF 121
+ W RY+ F+VLYP+G++GE+ +Y ALP++++ +++ +PNK NF+F +Y +
Sbjct: 330 PYLIKWARYTLFIVLYPMGVSGELLTIYAALPFVRQAGLYSISLPNKYNFSFDYYAFLIL 509
Query: 122 ILLGVYPYGSYVMYSYMLAQRRKMF 146
I++ P +Y +M+ QRRK+
Sbjct: 510 IMISYIPIFPQ-LYFHMIHQRRKIL 581
>ref|XM_001650472.1| Aedes aegypti ptpla domain protein partial mRNA
Length = 809
Score = 92.4 bits (228), Expect = 4e-17, Method: Composition-based stats.
Identities = 57/141 (40%), Positives = 78/141 (55%), Gaps = 1/141 (0%)
Frame = +3
Query: 7 TLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNTTAPP-L 65
TLLQV R +V+ A+ G E S + W L E IRYS+Y +L T P +
Sbjct: 366 TLLQVFGRCMVVVAAIE-GTPEGKVSPGLPIALFCWSLMETIRYSYYVLHLALTKVPFFM 542
Query: 66 TWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSVWFILLG 125
TWLRY+ F+ LYP G GE+ C Y A + ++ W++ MPN+ NFTFS+Y W + +G
Sbjct: 543 TWLRYTIFIPLYPTGFIGELLCFYWAQSHFRETDKWSLSMPNRFNFTFSFYYFAWIMSIG 722
Query: 126 VYPYGSYVMYSYMLAQRRKMF 146
P MY +M QRRK+
Sbjct: 723 YLPMFPQ-MYLHMFGQRRKIL 782
>gb|BT050020.1| Salmo salar clone ssal-plnb-029-159 PHS1 putative mRNA, complete
cds
Length = 962
Score = 92.4 bits (228), Expect = 4e-17, Method: Composition-based stats.
Identities = 56/145 (38%), Positives = 87/145 (60%)
Frame = +2
Query: 2 SPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNTT 61
S V T QVLSR+ + + AV E + + V AW ++E+IRYSFY +LLN
Sbjct: 359 SSVVLTGFQVLSRVFLTW-AVTHSVREVQSEDSVLLFVSAWTITEIIRYSFYTFSLLNHL 535
Query: 62 APPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSVWF 121
+ W RY+ F+VLYP+G+TGE+ +Y ALPY++K ++V +PNK NF+F +Y +
Sbjct: 536 PYLIKWARYTFFLVLYPMGVTGELLTIYAALPYVQKTGLYSVTLPNKYNFSFDYYTFLIL 715
Query: 122 ILLGVYPYGSYVMYSYMLAQRRKMF 146
++ P +Y +M+ QR+K+
Sbjct: 716 TMVSYIPLFPQ-LYFHMMRQRKKVL 787
>gb|FJ635220.1| Synthetic construct Drosophila melanogaster clone BS05688 encodes
CG6746-RA
Length = 770
Score = 92.4 bits (228), Expect = 5e-17, Method: Composition-based stats.
Identities = 44/108 (40%), Positives = 72/108 (66%)
Frame = +2
Query: 39 VVAWCLSEVIRYSFYGANLLNTTAPPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKH 98
++AW ++E+IRY +Y N++ + +LRY+ F+VLYP+G+TGE+ C + A Y +++
Sbjct: 392 LLAWAITEIIRYGYYALNIVKVVPHFVVFLRYTTFIVLYPIGVTGELLCFWWAQSYAREN 571
Query: 99 KPWTVEMPNKLNFTFSWYNSVWFILLGVYPYGSYVMYSYMLAQRRKMF 146
W+V MPNK N TFS++ +W ++LG P +Y +M AQRRK+
Sbjct: 572 SVWSVVMPNKWNATFSYFGFLWIVMLGYIPIFPQ-LYLHMFAQRRKIL 712
>ref|XM_001962470.1| Drosophila ananassae GF15500 (Dana\GF15500), mRNA
Length = 732
Score = 92.0 bits (227), Expect = 6e-17, Method: Composition-based stats.
Identities = 44/108 (40%), Positives = 72/108 (66%)
Frame = +1
Query: 39 VVAWCLSEVIRYSFYGANLLNTTAPPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKH 98
++AW ++E+IRY +Y N++ + +LRY+ F+VLYP+G+TGE+ C + A Y +++
Sbjct: 370 LLAWAITEIIRYGYYALNIIKVVPHFVVFLRYTTFIVLYPIGVTGELLCFWWAQSYAREN 549
Query: 99 KPWTVEMPNKLNFTFSWYNSVWFILLGVYPYGSYVMYSYMLAQRRKMF 146
W+V MPNK N TFS++ +W ++LG P +Y +M AQRRK+
Sbjct: 550 SVWSVVMPNKWNATFSYFGFLWIVMLGYIPIFPQ-LYLHMFAQRRKIL 690
>dbj|AK237989.1| Sus scrofa mRNA, clone:TCH010025F09, expressed in trachea
Length = 1356
Score = 92.0 bits (227), Expect = 6e-17, Method: Composition-based stats.
Identities = 43/108 (39%), Positives = 73/108 (67%)
Frame = +3
Query: 39 VVAWCLSEVIRYSFYGANLLNTTAPPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKH 98
VVAW ++E+IRYSFY +LLN + W RY+ F+VLYP+G++GE+ +Y ALP++++
Sbjct: 939 VVAWTITEIIRYSFYTFSLLNHLPYLIKWARYTLFIVLYPMGVSGELLTVYAALPFVRQA 1118
Query: 99 KPWTVEMPNKLNFTFSWYNSVWFILLGVYPYGSYVMYSYMLAQRRKMF 146
+++ +PNK NF+F +Y + +++ P +Y +M+ QRRK+
Sbjct: 1119 GLYSISLPNKYNFSFDYYTFLILMMISYIPIFPQ-LYFHMIHQRRKVL 1259
>ref|XM_002079135.1| Drosophila simulans GD22144 (Dsim\GD22144), mRNA
Length = 738
Score = 91.7 bits (226), Expect = 7e-17, Method: Composition-based stats.
Identities = 44/108 (40%), Positives = 72/108 (66%)
Frame = +1
Query: 39 VVAWCLSEVIRYSFYGANLLNTTAPPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKH 98
++AW ++E+IRY +Y N++ + +LRY+ F+VLYP+G+TGE+ C + A Y +++
Sbjct: 376 LLAWAITEIIRYGYYALNIVKVVPHFVVFLRYTTFIVLYPIGVTGELLCFWWAQSYAREN 555
Query: 99 KPWTVEMPNKLNFTFSWYNSVWFILLGVYPYGSYVMYSYMLAQRRKMF 146
W+V MPNK N TFS++ +W ++LG P +Y +M AQRRK+
Sbjct: 556 SVWSVVMPNKWNATFSYFGFLWIVMLGYIPIFPQ-LYLHMFAQRRKIL 696
>ref|XM_002041968.1| Drosophila sechellia GM26451 (Dsec\GM26451), mRNA
Length = 738
Score = 91.7 bits (226), Expect = 7e-17, Method: Composition-based stats.
Identities = 44/108 (40%), Positives = 72/108 (66%)
Frame = +1
Query: 39 VVAWCLSEVIRYSFYGANLLNTTAPPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKH 98
++AW ++E+IRY +Y N++ + +LRY+ F+VLYP+G+TGE+ C + A Y +++
Sbjct: 376 LLAWAITEIIRYGYYALNIVKVVPHFVVFLRYTTFIVLYPIGVTGELLCFWWAQSYAREN 555
Query: 99 KPWTVEMPNKLNFTFSWYNSVWFILLGVYPYGSYVMYSYMLAQRRKMF 146
W+V MPNK N TFS++ +W ++LG P +Y +M AQRRK+
Sbjct: 556 SVWSVVMPNKWNATFSYFGFLWIVMLGYIPIFPQ-LYLHMFAQRRKIL 696
>ref|XM_002002040.1| Drosophila mojavensis GI17184 (Dmoj\GI17184), mRNA
Length = 723
Score = 91.7 bits (226), Expect = 7e-17, Method: Composition-based stats.
Identities = 44/106 (41%), Positives = 69/106 (65%)
Frame = +1
Query: 41 AWCLSEVIRYSFYGANLLNTTAPPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKP 100
AW ++E+IRY FY N++ + +LRY+ F+ LYP+G+TGE+ C + A Y +++
Sbjct: 379 AWSITEIIRYGFYALNIIKVVPKLVVFLRYTTFIALYPIGVTGELLCFWWAQRYARENSV 558
Query: 101 WTVEMPNKLNFTFSWYNSVWFILLGVYPYGSYVMYSYMLAQRRKMF 146
W++EMPNKLN TFS+Y +W ++LG P +Y +M RRK+
Sbjct: 559 WSLEMPNKLNATFSYYALLWIVMLGYIPIFPQ-LYMHMFTLRRKIL 693
>ref|XM_001993350.1| Drosophila grimshawi GH13780 (Dgri\GH13780), mRNA
Length = 723
Score = 91.7 bits (226), Expect = 7e-17, Method: Composition-based stats.
Identities = 44/106 (41%), Positives = 67/106 (63%)
Frame = +1
Query: 41 AWCLSEVIRYSFYGANLLNTTAPPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKP 100
AW ++E+IRY FY N++ + +LRY+ F+ LYP+G+TGE+ C + A Y K+H
Sbjct: 379 AWAITEIIRYGFYALNIIKVVPKFVVFLRYTTFIALYPIGVTGELLCFWWAQRYAKEHSV 558
Query: 101 WTVEMPNKLNFTFSWYNSVWFILLGVYPYGSYVMYSYMLAQRRKMF 146
W++EMPNK N TFS++ +W I+L P +Y +M RRK+
Sbjct: 559 WSIEMPNKWNATFSYFTLLWIIMLAYIPIFPQ-LYMHMFTLRRKIL 693
>gb|AE014134.5| Drosophila melanogaster chromosome 2L, complete sequence
Length = 23011544
Score = 91.3 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 44/108 (40%), Positives = 72/108 (66%)
Frame = -3
Query: 39 VVAWCLSEVIRYSFYGANLLNTTAPPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKH 98
++AW ++E+IRY +Y N++ + +LRY+ F+VLYP+G+TGE+ C + A Y +++
Sbjct: 12001776 LLAWAITEIIRYGYYALNIVKVVPHFVVFLRYTTFIVLYPIGVTGELLCFWWAQSYAREN 12001597
Query: 99 KPWTVEMPNKLNFTFSWYNSVWFILLGVYPYGSYVMYSYMLAQRRKMF 146
W+V MPNK N TFS++ +W ++LG P +Y +M AQRRK+
Sbjct: 12001596 SVWSVVMPNKWNATFSYFGFLWIVMLGYIPIFPQ-LYLHMFAQRRKIL 12001456
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 39/96 (40%), Positives = 56/96 (58%)
Frame = -3
Query: 49 RYSFYGANLLNTTAPPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNK 108
RY +Y A LL LTWLRY+ ++ LYP+GI E + + +PYI++ K +TVEMPN
Sbjct: 13444569 RYPYYLAQLLGREVGLLTWLRYTIWIPLYPMGILCEGIIVLRNIPYIEETKRFTVEMPNP 13444390
Query: 109 LNFTFSWYNSVWFILLGVYPYGSYVMYSYMLAQRRK 144
N TF + L+ + GSY++ S+M R K
Sbjct: 13444389 WNITFDMVLFLKIYLMLLIIPGSYLVMSHMAKLRSK 13444282
>ref|NM_135690.2| Drosophila melanogaster CG6746 (CG6746), mRNA
Length = 1043
Score = 91.3 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 44/108 (40%), Positives = 72/108 (66%)
Frame = +3
Query: 39 VVAWCLSEVIRYSFYGANLLNTTAPPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKH 98
++AW ++E+IRY +Y N++ + +LRY+ F+VLYP+G+TGE+ C + A Y +++
Sbjct: 501 LLAWAITEIIRYGYYALNIVKVVPHFVVFLRYTTFIVLYPIGVTGELLCFWWAQSYAREN 680
Query: 99 KPWTVEMPNKLNFTFSWYNSVWFILLGVYPYGSYVMYSYMLAQRRKMF 146
W+V MPNK N TFS++ +W ++LG P +Y +M AQRRK+
Sbjct: 681 SVWSVVMPNKWNATFSYFGFLWIVMLGYIPIFPQ-LYLHMFAQRRKIL 821
>gb|AC011065.6| Drosophila melanogaster, chromosome 2L, region 33B-33B, BAC clone
BACR37P12, complete sequence
Length = 181103
Score = 91.3 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 44/108 (40%), Positives = 72/108 (66%)
Frame = -2
Query: 39 VVAWCLSEVIRYSFYGANLLNTTAPPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKH 98
++AW ++E+IRY +Y N++ + +LRY+ F+VLYP+G+TGE+ C + A Y +++
Sbjct: 142666 LLAWAITEIIRYGYYALNIVKVVPHFVVFLRYTTFIVLYPIGVTGELLCFWWAQSYAREN 142487
Query: 99 KPWTVEMPNKLNFTFSWYNSVWFILLGVYPYGSYVMYSYMLAQRRKMF 146
W+V MPNK N TFS++ +W ++LG P +Y +M AQRRK+
Sbjct: 142486 SVWSVVMPNKWNATFSYFGFLWIVMLGYIPIFPQ-LYLHMFAQRRKIL 142346
>gb|AY069058.1| Drosophila melanogaster GH07085 full insert cDNA
Length = 1044
Score = 91.3 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 44/108 (40%), Positives = 72/108 (66%)
Frame = +1
Query: 39 VVAWCLSEVIRYSFYGANLLNTTAPPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKH 98
++AW ++E+IRY +Y N++ + +LRY+ F+VLYP+G+TGE+ C + A Y +++
Sbjct: 484 LLAWAITEIIRYGYYALNIVKVVPHFVVFLRYTTFIVLYPIGVTGELLCFWWAQSYAREN 663
Query: 99 KPWTVEMPNKLNFTFSWYNSVWFILLGVYPYGSYVMYSYMLAQRRKMF 146
W+V MPNK N TFS++ +W ++LG P +Y +M AQRRK+
Sbjct: 664 SVWSVVMPNKWNATFSYFGFLWIVMLGYIPIFPQ-LYLHMFAQRRKIL 804
>ref|NM_001048570.1| Oryza sativa (japonica cultivar-group) Os01g0150800 (Os01g0150800)
mRNA, complete cds
Length = 1264
Score = 91.3 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 55/148 (37%), Positives = 91/148 (61%), Gaps = 4/148 (2%)
Frame = +1
Query: 1 RSPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYG-ANLLN 59
RSPV +TL Q+ +RL +++G +R E + ++++WC++EV RYSF G
Sbjct: 574 RSPVSSTLPQITARLFMIWGILR-SFPEIHTHIFVTSLLISWCITEVTRYSFNGMKESFG 750
Query: 60 TTAPPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSW-YNS 118
T L WLRYS F+V +P+G+ E+G +Y +P++K + + + MPNK NF+ + Y S
Sbjct: 751 FTPSWLLWLRYSTFIVCFPIGMVSEVGLVYIVVPFMKASEKYCLRMPNKWNFSIKYFYAS 930
Query: 119 VWFILL--GVYPYGSYVMYSYMLAQRRK 144
V+F+ L VYP+ ++ Y++ QR+K
Sbjct: 931 VFFMALYAPVYPH----LFHYLIVQRKK 1002
>dbj|AK072612.1| Oryza sativa Japonica Group cDNA clone:J023134L09, full insert
sequence
Length = 1265
Score = 91.3 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 55/148 (37%), Positives = 91/148 (61%), Gaps = 4/148 (2%)
Frame = +2
Query: 1 RSPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYG-ANLLN 59
RSPV +TL Q+ +RL +++G +R E + ++++WC++EV RYSF G
Sbjct: 575 RSPVSSTLPQITARLFMIWGILR-SFPEIHTHIFVTSLLISWCITEVTRYSFNGMKESFG 751
Query: 60 TTAPPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSW-YNS 118
T L WLRYS F+V +P+G+ E+G +Y +P++K + + + MPNK NF+ + Y S
Sbjct: 752 FTPSWLLWLRYSTFIVCFPIGMVSEVGLVYIVVPFMKASEKYCLRMPNKWNFSIKYFYAS 931
Query: 119 VWFILL--GVYPYGSYVMYSYMLAQRRK 144
V+F+ L VYP+ ++ Y++ QR+K
Sbjct: 932 VFFMALYAPVYPH----LFHYLIVQRKK 1003
>ref|XM_001750971.1| Monosiga brevicollis MX1 predicted protein MONBRDRAFT_34801 mRNA,
complete cds
Length = 2464
Score = 90.9 bits (224), Expect = 1e-16, Method: Composition-based stats.
Identities = 56/152 (36%), Positives = 85/152 (55%), Gaps = 6/152 (3%)
Frame = +2
Query: 1 RSPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNT 60
++ V TT +QVLSR+++++ A + + SLAF M AW ++EV+RY++Y LL
Sbjct: 380 KAKVSTTFMQVLSRVMLVWAACWI-NPRIMNSLAFYTMTFAWAVTEVVRYNWYWTKLLLG 556
Query: 61 TAPP-LTWLRYSAFMVLYPVGITGEIGCLYKALPYI-----KKHKPWTVEMPNKLNFTFS 114
AP LTW RYS F+VLYP+G+ EI C+ +A+ Y ++ P E L
Sbjct: 557 DAPGFLTWCRYSFFVVLYPLGVASEIACILQAIGYYDALAEEQRVPDDDETAQFLARVAL 736
Query: 115 WYNSVWFILLGVYPYGSYVMYSYMLAQRRKMF 146
+N L +YP +Y ++ AQRRK+F
Sbjct: 737 TFNYTIMAFLSLYPIVFPGLYMHVWAQRRKVF 832
>ref|XM_002088388.1| Drosophila yakuba GE12555 (Dyak\GE12555), mRNA
Length = 735
Score = 90.1 bits (222), Expect = 2e-16, Method: Composition-based stats.
Identities = 43/108 (39%), Positives = 71/108 (65%)
Frame = +1
Query: 39 VVAWCLSEVIRYSFYGANLLNTTAPPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKH 98
++AW ++E+IRY +Y N++ + +LRY+ F+ LYP+G+TGE+ C + A Y +++
Sbjct: 373 LLAWAITEIIRYGYYALNIVKVVPHFVVFLRYTTFIALYPIGVTGELLCFWWAQSYAREN 552
Query: 99 KPWTVEMPNKLNFTFSWYNSVWFILLGVYPYGSYVMYSYMLAQRRKMF 146
W+V MPNK N TFS++ +W ++LG P +Y +M AQRRK+
Sbjct: 553 SVWSVVMPNKWNATFSYFGFLWIVMLGYIPIFPQ-LYLHMFAQRRKIL 693
>ref|XM_002224681.1| Branchiostoma floridae hypothetical protein (BRAFLDRAFT_115016)
mRNA, complete cds
Length = 732
Score = 90.1 bits (222), Expect = 2e-16, Method: Composition-based stats.
Identities = 57/144 (39%), Positives = 86/144 (59%)
Frame = +1
Query: 2 SPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNTT 61
S V T QV SR+ +++G V EA SL V AW ++E+IRYSFY LLN
Sbjct: 271 SNVLLTAFQVFSRVFLVWG-VAHPFKEAQTSLGMSLCVAAWTITEIIRYSFYTFALLNMK 447
Query: 62 APPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSVWF 121
L W RY+ F+VLYP+G++GE+ +Y A+ + K +++EMPN +NF+F ++ +
Sbjct: 448 PYILQWCRYTFFIVLYPIGVSGELLAIYNAVAPAAEQKAFSLEMPNPINFSFYYHYFLVG 627
Query: 122 ILLGVYPYGSYVMYSYMLAQRRKM 145
I+L P +Y +M+ QRRK+
Sbjct: 628 IMLTYIPVFPQ-LYFHMVRQRRKI 696
>ref|XM_001969749.1| Drosophila erecta GG10286 (Dere\GG10286), mRNA
Length = 735
Score = 89.4 bits (220), Expect = 3e-16, Method: Composition-based stats.
Identities = 43/108 (39%), Positives = 70/108 (64%)
Frame = +1
Query: 39 VVAWCLSEVIRYSFYGANLLNTTAPPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKH 98
++AW ++E+IRY +Y N++ + +LRY+ F+ LYP+G+TGE+ C + A Y ++
Sbjct: 373 LLAWAITEIIRYGYYALNIVKVVPHFVVFLRYTTFIALYPIGVTGELLCFWWAQSYASEN 552
Query: 99 KPWTVEMPNKLNFTFSWYNSVWFILLGVYPYGSYVMYSYMLAQRRKMF 146
W+V MPNK N TFS++ +W ++LG P +Y +M AQRRK+
Sbjct: 553 SVWSVVMPNKWNATFSYFGFLWIVMLGYIPIFPQ-LYLHMFAQRRKIL 693
>ref|XM_310376.5| Anopheles gambiae str. PEST AGAP003815-PA (AgaP_AGAP003815) mRNA,
complete cds
Length = 975
Score = 89.4 bits (220), Expect = 4e-16, Method: Composition-based stats.
Identities = 60/146 (41%), Positives = 85/146 (58%), Gaps = 1/146 (0%)
Frame = +1
Query: 2 SPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNTT 61
S V T LQV R +++ GA+ G +S + W L+E+IRYS+Y A+LL
Sbjct: 337 SNVAMTFLQVFGRCMIVAGAIE-GTPTGQKSPGLPLALFCWSLTEIIRYSYYVAHLLLPA 513
Query: 62 APPL-TWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSVW 120
P L WLRY+ F+ +YP G GE+ C Y A YI+ W+VE+PN+ NF+FS+Y +W
Sbjct: 514 VPSLLVWLRYTIFIPMYPCGFLGELLCSYWAQSYIRDTGKWSVELPNRFNFSFSFYYFIW 693
Query: 121 FILLGVYPYGSYVMYSYMLAQRRKMF 146
+ + P MY +M AQRRK+F
Sbjct: 694 IMAVCYMPLFPQ-MYLHMFAQRRKVF 768
>emb|BX063128.1|CNS09KVG Single read from an extremity of a full-length cDNA clone made from
Anopheles gambiae total adult females. 3-PRIME end of
clone FK0AAC44DB10 of strain 6-9 of Anopheles gambiae
(African malaria mosquito)
Length = 955
Score = 89.4 bits (220), Expect = 4e-16, Method: Composition-based stats.
Identities = 60/146 (41%), Positives = 85/146 (58%), Gaps = 1/146 (0%)
Frame = -3
Query: 2 SPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNTT 61
S V T LQV R +++ GA+ G +S + W L+E+IRYS+Y A+LL
Sbjct: 674 SNVAMTFLQVFGRCMIVAGAIE-GTPTGQKSPGLPLALFCWSLTEIIRYSYYVAHLLLPA 498
Query: 62 APPL-TWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSVW 120
P L WLRY+ F+ +YP G GE+ C Y A YI+ W+VE+PN+ NF+FS+Y +W
Sbjct: 497 VPSLLVWLRYTIFIPMYPCGFLGELLCSYWAQSYIRDTGKWSVELPNRFNFSFSFYYFIW 318
Query: 121 FILLGVYPYGSYVMYSYMLAQRRKMF 146
+ + P MY +M AQRRK+F
Sbjct: 317 IMAVCYMPLFPQ-MYLHMFAQRRKVF 243
>gb|CP000585.1| Ostreococcus lucimarinus CCE9901 chromosome 5, complete sequence
Length = 847696
Score = 89.4 bits (220), Expect = 4e-16, Method: Composition-based stats.
Identities = 48/113 (42%), Positives = 65/113 (57%)
Frame = -3
Query: 32 SLAFVQMVVAWCLSEVIRYSFYGANLLNTTAPPLTWLRYSAFMVLYPVGITGEIGCLYKA 91
S+A +V AW L+EV+RY Y L+ + LTW RY+ F+ LYP+G E+ +Y A
Sbjct: 623873 SVAATALVFAWALTEVVRYPSYVGGLIGRSPKWLTWSRYTVFVPLYPLGAAAEMKLMYDA 623694
Query: 92 LPYIKKHKPWTVEMPNKLNFTFSWYNSVWFILLGVYPYGSYVMYSYMLAQRRK 144
+ +K K + V MPN NF F Y + LL YP+ Y +Y YM AQRRK
Sbjct: 623693 RAHARKTKMYAVTMPNAYNFAFD-YVTFLNALLVAYPFLFYTLYRYMFAQRRK 623538
>emb|CR386940.1| Gallus gallus finished cDNA, clone ChEST164a18
Length = 958
Score = 89.4 bits (220), Expect = 4e-16, Method: Composition-based stats.
Identities = 44/115 (38%), Positives = 73/115 (63%), Gaps = 2/115 (1%)
Frame = +1
Query: 34 AFVQMVVAWCLSEVIRYSFYGANLLNTTAPPLTWLRYSAFMVLYPVGITGEIGCLYKALP 93
+ + +V W ++E+ RYSFY NLLN + W RY+ F++LYP G+ GE+ +Y ALP
Sbjct: 472 SVILFLVVWTVTEITRYSFYTFNLLNHLPYFIKWARYNFFIILYPAGVAGELLTIYAALP 651
Query: 94 YIKKHKPWTVEMPNKLNFTFSWYNSVWFILLGVYPYGSYV--MYSYMLAQRRKMF 146
Y+KK +++ +PNK N +F +Y +F+++ ++ Y +Y +ML QRRK+
Sbjct: 652 YVKKTGMYSLRLPNKYNVSFDYY---YFLIIVMFSYIPLFPQLYLHMLRQRRKVL 807
>emb|CR386138.1| Gallus gallus finished cDNA, clone ChEST362b6
Length = 956
Score = 89.0 bits (219), Expect = 5e-16, Method: Composition-based stats.
Identities = 44/115 (38%), Positives = 73/115 (63%), Gaps = 2/115 (1%)
Frame = +3
Query: 34 AFVQMVVAWCLSEVIRYSFYGANLLNTTAPPLTWLRYSAFMVLYPVGITGEIGCLYKALP 93
+ + +V W ++E+ RYSFY NLLN + W RY+ F++LYP G+ GE+ +Y ALP
Sbjct: 465 SVILFLVVWTVTEITRYSFYTFNLLNHLPYFIKWARYNFFIILYPAGVAGELLTIYAALP 644
Query: 94 YIKKHKPWTVEMPNKLNFTFSWYNSVWFILLGVYPYGSYV--MYSYMLAQRRKMF 146
Y+KK +++ +PNK N +F +Y +F+++ ++ Y +Y +ML QRRK+
Sbjct: 645 YVKKTGMYSLRLPNKYNVSFDYY---YFLIIVMFSYIPLFPQLYLHMLRQRRKVL 800
>ref|XM_418620.2| PREDICTED: Gallus gallus similar to putative tyrosine phosphatase
(LOC420518), mRNA
Length = 870
Score = 88.6 bits (218), Expect = 6e-16, Method: Composition-based stats.
Identities = 44/115 (38%), Positives = 73/115 (63%), Gaps = 2/115 (1%)
Frame = +1
Query: 34 AFVQMVVAWCLSEVIRYSFYGANLLNTTAPPLTWLRYSAFMVLYPVGITGEIGCLYKALP 93
+ + +V W ++E+ RYSFY NLLN + W RY+ F++LYP G+ GE+ +Y ALP
Sbjct: 502 SVILFLVVWTVTEITRYSFYTFNLLNHLPYFIKWARYNFFIILYPAGVAGELLTIYAALP 681
Query: 94 YIKKHKPWTVEMPNKLNFTFSWYNSVWFILLGVYPYGSYV--MYSYMLAQRRKMF 146
Y+KK +++ +PNK N +F +Y +F+++ ++ Y +Y +ML QRRK+
Sbjct: 682 YVKKTGMYSLRLPNKYNVSFDYY---YFLIIVMFSYIPLFPQLYLHMLRQRRKVL 837
>ref|XM_002207237.1| Branchiostoma floridae hypothetical protein (BRAFLDRAFT_168702)
mRNA, partial cds
Length = 693
Score = 88.6 bits (218), Expect = 6e-16, Method: Composition-based stats.
Identities = 56/144 (38%), Positives = 86/144 (59%)
Frame = +1
Query: 2 SPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNTT 61
S V T QV SR+ +++G V EA SL V AW ++E+IRYSFY LLN
Sbjct: 259 SNVLLTAFQVFSRVFLVWG-VAHPFKEAQTSLGMSLCVAAWTITEIIRYSFYTFALLNMK 435
Query: 62 APPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSVWF 121
L W RY+ F+VLYP+G++GE+ +Y A+ + K +++E+PN +NF+F ++ +
Sbjct: 436 PYILQWCRYTFFIVLYPIGVSGELLAIYSAVTPAAEQKAFSLELPNPINFSFYYHYFLVG 615
Query: 122 ILLGVYPYGSYVMYSYMLAQRRKM 145
I+L P +Y +M+ QRRK+
Sbjct: 616 IMLTYIPVFPQ-LYFHMVRQRRKI 684
>ref|XM_001936062.1| Pyrenophora tritici-repentis Pt-1C-BFP protein tyrosine
phosphatase, mRNA
Length = 759
Score = 88.6 bits (218), Expect = 6e-16, Method: Composition-based stats.
Identities = 60/148 (40%), Positives = 91/148 (61%), Gaps = 3/148 (2%)
Frame = +1
Query: 1 RSPVGTTLLQVLSR--LIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLL 58
R+P+ TTL+QV SR L+ L + T S A+ M++AW ++EVIRYS++ +L
Sbjct: 334 RAPLLTTLMQVASRYLLVHLVASPPAFPTSTRHSPAYSTMLLAWSVTEVIRYSYFVFSLS 513
Query: 59 NTTAPPL-TWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYN 117
P + TWLRY+ F+VLYP+GI E +YKA+P K+ N+L F ++++
Sbjct: 514 GLGVPKIWTWLRYNTFLVLYPLGIASECWLVYKAIPLAKER--------NEL-FAYAFWT 666
Query: 118 SVWFILLGVYPYGSYVMYSYMLAQRRKM 145
+L VY GSYV++S+ML+QRRK+
Sbjct: 667 -----VLAVYVPGSYVLFSHMLSQRRKI 735
>ref|XM_001073002.1| PREDICTED: Rattus norvegicus similar to protein tyrosine
phosphatase-like (proline instead of catalytic
arginine), member b (LOC690040), mRNA
Length = 786
Score = 88.6 bits (218), Expect = 7e-16, Method: Composition-based stats.
Identities = 43/108 (39%), Positives = 73/108 (67%)
Frame = +1
Query: 39 VVAWCLSEVIRYSFYGANLLNTTAPPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKH 98
V+AW ++E+IRYSFY +LLN + W RY+ F+VLYP+G+TGE+ +Y ALPY+++
Sbjct: 235 VIAWTITEIIRYSFYTFSLLNHLPYIIKWARYTLFIVLYPMGVTGELLTIYAALPYVRQA 414
Query: 99 KPWTVEMPNKLNFTFSWYNSVWFILLGVYPYGSYVMYSYMLAQRRKMF 146
+++ +PNK NF+F ++ + +++ P +Y +M+ QRRK+
Sbjct: 415 GLYSISLPNKYNFSFDYHAFLILVMISYIPLFPQ-LYFHMIQQRRKVL 555
>ref|XM_001357053.2| Drosophila pseudoobscura pseudoobscura GA19829 (Dpse\GA19829), mRNA
Length = 747
Score = 88.6 bits (218), Expect = 7e-16, Method: Composition-based stats.
Identities = 43/106 (40%), Positives = 68/106 (64%)
Frame = +1
Query: 41 AWCLSEVIRYSFYGANLLNTTAPPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKP 100
AW ++E+IRY +Y N++ + +LRY+ F+VLYP+G+TGE+ C + A Y +++
Sbjct: 376 AWAITEIIRYGYYALNIVKVVPHFVVFLRYTTFIVLYPIGVTGELLCFWWAQSYARENSV 555
Query: 101 WTVEMPNKLNFTFSWYNSVWFILLGVYPYGSYVMYSYMLAQRRKMF 146
W+ MPNK N TFS+ +W ++LG P +Y +M AQRRK+
Sbjct: 556 WSTVMPNKWNATFSYLAFLWIVMLGYIPIFPQ-LYLHMFAQRRKIL 690
>ref|XM_002020822.1| Drosophila persimilis GL14177 (Dper\GL14177), mRNA
Length = 747
Score = 88.6 bits (218), Expect = 7e-16, Method: Composition-based stats.
Identities = 43/106 (40%), Positives = 68/106 (64%)
Frame = +1
Query: 41 AWCLSEVIRYSFYGANLLNTTAPPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKP 100
AW ++E+IRY +Y N++ + +LRY+ F+VLYP+G+TGE+ C + A Y +++
Sbjct: 376 AWAITEIIRYGYYALNIVKVVPHFVVFLRYTTFIVLYPIGVTGELLCFWWAQSYARENSV 555
Query: 101 WTVEMPNKLNFTFSWYNSVWFILLGVYPYGSYVMYSYMLAQRRKMF 146
W+ MPNK N TFS+ +W ++LG P +Y +M AQRRK+
Sbjct: 556 WSTVMPNKWNATFSYLAFLWIVMLGYIPIFPQ-LYLHMFAQRRKIL 690
>gb|AF114493.1|AF114493 Mus musculus putative tyrosine phosphatase (Ptpla) mRNA, complete
cds
Length = 1079
Score = 88.2 bits (217), Expect = 9e-16, Method: Composition-based stats.
Identities = 46/115 (40%), Positives = 74/115 (64%), Gaps = 2/115 (1%)
Frame = +3
Query: 34 AFVQMVVAWCLSEVIRYSFYGANLLNTTAPPLTWLRYSAFMVLYPVGITGEIGCLYKALP 93
+ V +V+W ++E+ RYSFY +LL+ + W RY+ F++LYPVG+ GE+ +Y ALP
Sbjct: 594 SVVLFLVSWTVTEITRYSFYTFSLLDHLPHFIKWARYNLFIILYPVGVAGELLTIYAALP 773
Query: 94 YIKKHKPWTVEMPNKLNFTFSWYNSVWFILLGVYPYGSYV--MYSYMLAQRRKMF 146
Y+KK ++V +PNK N +F +Y +F+L+ + Y +Y +ML QRRK+
Sbjct: 774 YVKKSGMFSVRLPNKYNVSFDYY---YFLLITMASYIPLFPQLYFHMLRQRRKVL 929
>gb|BC141017.1| Mus musculus protein tyrosine phosphatase-like (proline instead of
catalytic arginine), member a, mRNA (cDNA clone
MGC:175978 IMAGE:9055629), complete cds
Length = 925
Score = 87.8 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 46/115 (40%), Positives = 74/115 (64%), Gaps = 2/115 (1%)
Frame = +1
Query: 34 AFVQMVVAWCLSEVIRYSFYGANLLNTTAPPLTWLRYSAFMVLYPVGITGEIGCLYKALP 93
+ V +V+W ++E+ RYSFY +LL+ + W RY+ F++LYPVG+ GE+ +Y ALP
Sbjct: 535 SVVLFLVSWTVTEITRYSFYTFSLLDHLPHFIKWARYNLFIILYPVGVAGELLTIYAALP 714
Query: 94 YIKKHKPWTVEMPNKLNFTFSWYNSVWFILLGVYPYGSYV--MYSYMLAQRRKMF 146
Y+KK ++V +PNK N +F +Y +F+L+ + Y +Y +ML QRRK+
Sbjct: 715 YVKKSGMFSVRLPNKYNVSFDYY---YFLLITMASYIPLFPQLYFHMLRQRRKVL 870
>gb|BC138116.1| Mus musculus protein tyrosine phosphatase-like (proline instead of
catalytic arginine), member a, mRNA (cDNA clone
MGC:169740 IMAGE:8861135), complete cds
Length = 925
Score = 87.8 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 46/115 (40%), Positives = 74/115 (64%), Gaps = 2/115 (1%)
Frame = +1
Query: 34 AFVQMVVAWCLSEVIRYSFYGANLLNTTAPPLTWLRYSAFMVLYPVGITGEIGCLYKALP 93
+ V +V+W ++E+ RYSFY +LL+ + W RY+ F++LYPVG+ GE+ +Y ALP
Sbjct: 535 SVVLFLVSWTVTEITRYSFYTFSLLDHLPHFIKWARYNLFIILYPVGVAGELLTIYAALP 714
Query: 94 YIKKHKPWTVEMPNKLNFTFSWYNSVWFILLGVYPYGSYV--MYSYMLAQRRKMF 146
Y+KK ++V +PNK N +F +Y +F+L+ + Y +Y +ML QRRK+
Sbjct: 715 YVKKSGMFSVRLPNKYNVSFDYY---YFLLITMASYIPLFPQLYFHMLRQRRKVL 870
>ref|NM_013935.3| Mus musculus protein tyrosine phosphatase-like (proline instead of
catalytic arginine), member a (Ptpla), transcript
variant 1, mRNA
Length = 1015
Score = 87.8 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 46/115 (40%), Positives = 74/115 (64%), Gaps = 2/115 (1%)
Frame = +1
Query: 34 AFVQMVVAWCLSEVIRYSFYGANLLNTTAPPLTWLRYSAFMVLYPVGITGEIGCLYKALP 93
+ V +V+W ++E+ RYSFY +LL+ + W RY+ F++LYPVG+ GE+ +Y ALP
Sbjct: 547 SVVLFLVSWTVTEITRYSFYTFSLLDHLPHFIKWARYNLFIILYPVGVAGELLTIYAALP 726
Query: 94 YIKKHKPWTVEMPNKLNFTFSWYNSVWFILLGVYPYGSYV--MYSYMLAQRRKMF 146
Y+KK ++V +PNK N +F +Y +F+L+ + Y +Y +ML QRRK+
Sbjct: 727 YVKKSGMFSVRLPNKYNVSFDYY---YFLLITMASYIPLFPQLYFHMLRQRRKVL 882
>ref|XM_751061.1| Ustilago maydis 521 hypothetical protein (UM00007.1) partial mRNA
Length = 855
Score = 87.8 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 56/148 (37%), Positives = 79/148 (53%), Gaps = 3/148 (2%)
Frame = +1
Query: 1 RSPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNT 60
RSPV TT +QV SRL +++G ++A S + MV+AW ++E +RY FY LLN+
Sbjct: 388 RSPVTTTAIQVASRLFMVWGVTERY-SQAWTSPFYASMVLAWAITECVRYPFYANQLLNS 564
Query: 61 TAPPLTWLRYSAFMVLYPVGITGEIGCLYKALPY---IKKHKPWTVEMPNKLNFTFSWYN 117
P L W RY+ F VLYP+G E C+ LP K W + + F+
Sbjct: 565 EGPGLLWARYTLFYVLYPIGAASEAMCILATLPNGLPFNKPAAWDLRA-----YVFAGLF 729
Query: 118 SVWFILLGVYPYGSYVMYSYMLAQRRKM 145
+W+ G YVMY+YM+ QRRK+
Sbjct: 730 VIWWP-------GLYVMYTYMIKQRRKV 792
>gb|AF162707.1|AF162707 Ovis aries protein tyrosine phosphatase-like protein PTPLA (PTPLA)
mRNA, complete cds
Length = 1016
Score = 87.8 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 46/115 (40%), Positives = 74/115 (64%), Gaps = 2/115 (1%)
Frame = +1
Query: 34 AFVQMVVAWCLSEVIRYSFYGANLLNTTAPPLTWLRYSAFMVLYPVGITGEIGCLYKALP 93
+ V +VAW ++E+ RYSFY +LL+ + W RY+ F++LYPVG+ GE+ +Y ALP
Sbjct: 547 SVVLFLVAWTVTEITRYSFYTFSLLDHLPYFIKWARYNFFIILYPVGVAGELLTIYAALP 726
Query: 94 YIKKHKPWTVEMPNKLNFTFSWYNSVWFILLGVYPYGSYV--MYSYMLAQRRKMF 146
Y+KK +++ +PNK N +F +Y +F+L+ + Y +Y +ML QRRK+
Sbjct: 727 YVKKTGMFSIRLPNKYNVSFDYY---YFLLITMASYIPLFPQLYFHMLRQRRKVL 882
>ref|XR_024193.1| PREDICTED: Pan troglodytes hypothetical LOC450331 (LOC450331), mRNA
Length = 1306
Score = 87.8 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 46/115 (40%), Positives = 74/115 (64%), Gaps = 2/115 (1%)
Frame = +2
Query: 34 AFVQMVVAWCLSEVIRYSFYGANLLNTTAPPLTWLRYSAFMVLYPVGITGEIGCLYKALP 93
+ V +VAW ++E+ RYSFY +LL+ + W RY+ F++LYPVG+ GE+ +Y ALP
Sbjct: 533 SVVLFLVAWTVTEITRYSFYTFSLLDHLPYFIKWARYNFFIILYPVGVAGELLTIYAALP 712
Query: 94 YIKKHKPWTVEMPNKLNFTFSWYNSVWFILLGVYPYGSYV--MYSYMLAQRRKMF 146
Y+KK +++ +PNK N +F +Y +F+L+ + Y +Y +ML QRRK+
Sbjct: 713 YVKKTGMFSIRLPNKYNVSFDYY---YFLLITMASYIPLFPQLYFHMLRQRRKVL 868
>emb|AM260199.1| Rattus norvegicus mRNA for protein tyrosine phosphatase-like
protein A (Ptpla gene)
Length = 951
Score = 87.8 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 46/115 (40%), Positives = 74/115 (64%), Gaps = 2/115 (1%)
Frame = +2
Query: 34 AFVQMVVAWCLSEVIRYSFYGANLLNTTAPPLTWLRYSAFMVLYPVGITGEIGCLYKALP 93
+ V +V+W ++E+ RYSFY +LL+ + W RY+ F++LYPVG+ GE+ +Y ALP
Sbjct: 470 SVVLFLVSWTVTEITRYSFYTFSLLDHLPHFIKWARYNFFIILYPVGVAGELLTIYAALP 649
Query: 94 YIKKHKPWTVEMPNKLNFTFSWYNSVWFILLGVYPYGSYV--MYSYMLAQRRKMF 146
Y+KK ++V +PNK N +F +Y +F+L+ + Y +Y +ML QRRK+
Sbjct: 650 YVKKSGMFSVRLPNKYNVSFDYY---YFLLITMASYIPLFPQLYFHMLRQRRKVL 805
>gb|AY610166.1| Sus scrofa clone Clu_8309.scr.msk.p1.Contig3, mRNA sequence
Length = 979
Score = 87.8 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 46/115 (40%), Positives = 74/115 (64%), Gaps = 2/115 (1%)
Frame = +1
Query: 34 AFVQMVVAWCLSEVIRYSFYGANLLNTTAPPLTWLRYSAFMVLYPVGITGEIGCLYKALP 93
+ V +VAW ++E+ RYSFY +LL+ + W RY+ F++LYPVG+ GE+ +Y ALP
Sbjct: 526 SVVLFLVAWTVTEITRYSFYTFSLLDHLPYFIKWARYNFFIILYPVGVAGELLTIYAALP 705
Query: 94 YIKKHKPWTVEMPNKLNFTFSWYNSVWFILLGVYPYGSYV--MYSYMLAQRRKMF 146
Y+KK +++ +PNK N +F +Y +F+L+ + Y +Y +ML QRRK+
Sbjct: 706 YVKKTGMFSIRLPNKYNVSFDYY---YFLLITMVSYIPLFPQLYFHMLRQRRKVL 861
>dbj|AK010119.1| Mus musculus adult male tongue cDNA, RIKEN full-length enriched
library, clone:2310068P04 product:protein tyrosine
phosphatase-like (proline instead of catalytic
arginine), member a, full insert sequence
Length = 845
Score = 87.4 bits (215), Expect = 1e-15, Method: Composition-based stats.
Identities = 46/115 (40%), Positives = 74/115 (64%), Gaps = 2/115 (1%)
Frame = +2
Query: 34 AFVQMVVAWCLSEVIRYSFYGANLLNTTAPPLTWLRYSAFMVLYPVGITGEIGCLYKALP 93
+ V +V+W ++E+ RYSFY +LL+ + W RY+ F++LYPVG+ GE+ +Y ALP
Sbjct: 392 SVVLFLVSWTVTEITRYSFYTFSLLDHLPHFIKWARYNLFIILYPVGVAGELLTIYAALP 571
Query: 94 YIKKHKPWTVEMPNKLNFTFSWYNSVWFILLGVYPYGSYV--MYSYMLAQRRKMF 146
Y+KK ++V +PNK N +F +Y +F+L+ + Y +Y +ML QRRK+
Sbjct: 572 YVKKSGMFSVRLPNKYNVSFDYY---YFLLITMASYIPLFPQLYFHMLRQRRKVL 727
>emb|BX063127.1|CNS09KVF Single read from an extremity of a full-length cDNA clone made from
Anopheles gambiae total adult females. 5-PRIME end of
clone FK0AAC44DB10 of strain 6-9 of Anopheles gambiae
(African malaria mosquito)
Length = 947
Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 59/146 (40%), Positives = 84/146 (57%), Gaps = 1/146 (0%)
Frame = +3
Query: 2 SPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNTT 61
S V T LQV R +++ GA+ G +S + W L+E+IRYS+Y A+LL
Sbjct: 330 SNVAMTFLQVFGRCMIVAGAIE-GTPTGQKSPGLPLALFCWSLTEIIRYSYYVAHLLLPA 506
Query: 62 APPL-TWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSVW 120
P L WLRY+ F+ +YP G GE+ C A YI+ W+VE+PN+ NF+FS+Y +W
Sbjct: 507 VPSLLVWLRYTIFIPMYPCGFLGELLCTNWAQSYIRDTGKWSVELPNRFNFSFSFYYFIW 686
Query: 121 FILLGVYPYGSYVMYSYMLAQRRKMF 146
+ + P MY +M AQRRK+F
Sbjct: 687 IMAVCYMPLFPQ-MYLHMFAQRRKVF 761
>ref|XM_001091308.1| PREDICTED: Macaca mulatta similar to protein tyrosine
phosphatase-like, member A (LOC700635), mRNA
Length = 1303
Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 46/115 (40%), Positives = 74/115 (64%), Gaps = 2/115 (1%)
Frame = +3
Query: 34 AFVQMVVAWCLSEVIRYSFYGANLLNTTAPPLTWLRYSAFMVLYPVGITGEIGCLYKALP 93
+ V +VAW ++E+ RYSFY +LL+ + W RY+ F++LYPVG+ GE+ +Y ALP
Sbjct: 537 SVVLFLVAWTVTEITRYSFYTFSLLDHLPYFIKWARYNFFIILYPVGVAGELLTIYAALP 716
Query: 94 YIKKHKPWTVEMPNKLNFTFSWYNSVWFILLGVYPYGSYV--MYSYMLAQRRKMF 146
Y+KK +++ +PNK N +F +Y +F+L+ + Y +Y +ML QRRK+
Sbjct: 717 YVKKTGMFSIRLPNKYNVSFDYY---YFLLITMASYIPLFPQLYFHMLRQRRKVL 872
>gb|AF114494.1|AF114494 Homo sapiens putative tyrosine phosphatase (PTPLA) mRNA, complete
cds
Length = 1003
Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 46/115 (40%), Positives = 74/115 (64%), Gaps = 2/115 (1%)
Frame = +1
Query: 34 AFVQMVVAWCLSEVIRYSFYGANLLNTTAPPLTWLRYSAFMVLYPVGITGEIGCLYKALP 93
+ V +VAW ++E+ RYSFY +LL+ + W RY+ F++LYPVG+ GE+ +Y ALP
Sbjct: 547 SVVLFLVAWTVTEITRYSFYTFSLLDHLPYFIKWARYNFFIILYPVGVAGELLTIYAALP 726
Query: 94 YIKKHKPWTVEMPNKLNFTFSWYNSVWFILLGVYPYGSYV--MYSYMLAQRRKMF 146
Y+KK +++ +PNK N +F +Y +F+L+ + Y +Y +ML QRRK+
Sbjct: 727 YVKKTGMFSIRLPNKYNVSFDYY---YFLLITMASYIPLFPQLYFHMLRQRRKVL 882
>ref|XM_001519766.1| PREDICTED: Ornithorhynchus anatinus hypothetical protein
LOC100090771 (LOC100090771), partial mRNA
Length = 624
Score = 86.7 bits (213), Expect = 2e-15, Method: Composition-based stats.
Identities = 42/107 (39%), Positives = 70/107 (65%)
Frame = +1
Query: 39 VVAWCLSEVIRYSFYGANLLNTTAPPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKH 98
VVAW ++E+IRYSFY +LL+ + W RY+ F+ LYP+G+TGE+ +Y ALP++++
Sbjct: 274 VVAWTITEIIRYSFYTFSLLDHLPYLIKWTRYTLFIALYPMGVTGELLTIYAALPFVRRA 453
Query: 99 KPWTVEMPNKLNFTFSWYNSVWFILLGVYPYGSYVMYSYMLAQRRKM 145
++V +PNK NF+F ++ + ++ P +Y +ML QRR +
Sbjct: 454 GLYSVSLPNKYNFSFDYHAFLILVMFSYIPLFPQ-LYFHMLRQRRML 591
>emb|AJ876904.1| Canis familiaris mRNA for protein tyrosine phosphatase-like member
A, splice variant PTPLAfl (ptpla gene)
Length = 885
Score = 86.7 bits (213), Expect = 2e-15, Method: Composition-based stats.
Identities = 46/115 (40%), Positives = 74/115 (64%), Gaps = 2/115 (1%)
Frame = +3
Query: 34 AFVQMVVAWCLSEVIRYSFYGANLLNTTAPPLTWLRYSAFMVLYPVGITGEIGCLYKALP 93
+ V +VAW ++E+ RYSFY +LL+ + W RY+ F++LYPVG+ GE+ +Y ALP
Sbjct: 423 SVVLFLVAWTVTEITRYSFYTFSLLDHLPYFIKWARYNFFIILYPVGVVGELLTIYAALP 602
Query: 94 YIKKHKPWTVEMPNKLNFTFSWYNSVWFILLGVYPYGSYV--MYSYMLAQRRKMF 146
Y+KK +++ +PNK N +F +Y +F+L+ + Y +Y +ML QRRK+
Sbjct: 603 YVKKTGMFSIRLPNKYNVSFDYY---YFLLITMASYIPLFPQLYFHMLRQRRKVL 758
>ref|XM_866930.2| PREDICTED: Bos taurus similar to protein tyrosine phosphatase-like
protein PTPLA (PTPLA), mRNA
Length = 996
Score = 86.7 bits (213), Expect = 2e-15, Method: Composition-based stats.
Identities = 46/115 (40%), Positives = 74/115 (64%), Gaps = 2/115 (1%)
Frame = +1
Query: 34 AFVQMVVAWCLSEVIRYSFYGANLLNTTAPPLTWLRYSAFMVLYPVGITGEIGCLYKALP 93
+ V +VAW ++E+ RYSFY +LL+ + W RY+ F++LYPVG+ GE+ +Y ALP
Sbjct: 535 SVVLFLVAWTVTEITRYSFYTFSLLDHLPYFIKWARYNFFIILYPVGVAGELLTIYAALP 714
Query: 94 YIKKHKPWTVEMPNKLNFTFSWYNSVWFILLGVYPYGSYV--MYSYMLAQRRKMF 146
Y+KK +++ +PNK N +F +Y +F+L+ + Y +Y +ML QRRK+
Sbjct: 715 YVKKTGMFSIRLPNKYNVSFDYY---YFLLITMASYIPLFPQLYFHMLRQRRKVL 870
>emb|BX045201.1|CNS0971H Single read from an extremity of a full-length cDNA clone made from
Anopheles gambiae total adult females. 3-PRIME end of
clone FK0AAC19BA01 of strain 6-9 of Anopheles gambiae
(African malaria mosquito)
Length = 854
Score = 86.7 bits (213), Expect = 2e-15, Method: Composition-based stats.
Identities = 59/146 (40%), Positives = 83/146 (56%), Gaps = 1/146 (0%)
Frame = -2
Query: 2 SPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNTT 61
S V T LQV R +++ GA+ G +S + W L+E+IRYS++ ANLL
Sbjct: 676 SNVAMTFLQVFGRCMIVAGAIE-GTPTGQKSPGLPLALFCWSLTEIIRYSYFVANLLLPA 500
Query: 62 APPL-TWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSVW 120
P L WLRY+ F+ +YP G G + C Y A YI+ W+VE+PN+ NF+FS+Y +W
Sbjct: 499 VPSLLVWLRYTIFIPMYPCGFLGGLLCSYWAQSYIRDTGKWSVELPNRFNFSFSFYYFIW 320
Query: 121 FILLGVYPYGSYVMYSYMLAQRRKMF 146
+ + P MY M AQRRK+F
Sbjct: 319 IMAVCYMPLFPQ-MYLNMFAQRRKVF 245
>ref|XM_001418031.1| Ostreococcus lucimarinus CCE9901 predicted protein (OSTLU_87349)
mRNA, complete cds
Length = 648
Score = 86.3 bits (212), Expect = 3e-15, Method: Composition-based stats.
Identities = 48/113 (42%), Positives = 65/113 (57%)
Frame = +1
Query: 32 SLAFVQMVVAWCLSEVIRYSFYGANLLNTTAPPLTWLRYSAFMVLYPVGITGEIGCLYKA 91
S+A +V AW L+EV+RY Y L+ + LTW RY+ F+ LYP+G E+ +Y A
Sbjct: 286 SVAATALVFAWALTEVVRYPSYVGGLIGRSPKWLTWSRYTVFVPLYPLGAAAEMKLMYDA 465
Query: 92 LPYIKKHKPWTVEMPNKLNFTFSWYNSVWFILLGVYPYGSYVMYSYMLAQRRK 144
+ +K K + V MPN NF F Y + LL YP+ Y +Y YM AQRRK
Sbjct: 466 RAHARKTKMYAVTMPNAYNFAFD-YVTFLNALLVAYPFLFYTLYRYMFAQRRK 621
>ref|XM_001747419.1| Monosiga brevicollis MX1 predicted protein MONBRDRAFT_37825 mRNA,
complete cds
Length = 5508
Score = 86.3 bits (212), Expect = 3e-15, Method: Composition-based stats.
Identities = 53/143 (37%), Positives = 79/143 (55%), Gaps = 6/143 (4%)
Frame = +1
Query: 10 QVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNTTAPP-LTWL 68
QVLSR+++++ A + + SLAF M AW ++EV+RY++Y LL AP LTW
Sbjct: 1405 QVLSRVMLVWAACWI-NPRIMNSLAFYTMTFAWAVTEVVRYNWYWTKLLLGDAPGFLTWC 1581
Query: 69 RYSAFMVLYPVGITGEIGCLYKALPYI-----KKHKPWTVEMPNKLNFTFSWYNSVWFIL 123
RYS F+VLYP+G+ EI C+ +A+ Y ++ P E L +N
Sbjct: 1582 RYSFFVVLYPLGVASEIACILQAIGYYDALAEEQRVPDDDETAQFLARVALTFNYTIMAF 1761
Query: 124 LGVYPYGSYVMYSYMLAQRRKMF 146
L +YP +Y ++ AQRRK+F
Sbjct: 1762 LSLYPIVFPGLYMHVWAQRRKVF 1830
>ref|XM_001484478.1| Pichia guilliermondii ATCC 6260 hypothetical protein (PGUG_03909)
partial mRNA
Length = 657
Score = 86.3 bits (212), Expect = 3e-15, Method: Composition-based stats.
Identities = 50/148 (33%), Positives = 83/148 (56%), Gaps = 2/148 (1%)
Frame = +1
Query: 1 RSPVGTTLLQVLSRLIVLYGAVR-LGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLN 59
+SP+ TT QV SRL++++G + L ++ A ++ + ++W ++E+IRYS+Y NL
Sbjct: 232 KSPIFTTTTQVFSRLLIVWGICQALPNSPANSHWCYITLSLSWSITEIIRYSYYATNLAG 411
Query: 60 TTAPPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTF-SWYNS 118
LTWLRY+ F VLYP G++ EI +Y +L N+ + WY
Sbjct: 412 PVPQWLTWLRYTTFYVLYPTGVSSEISMIYLSL--------------NEASAVLGDWYKW 549
Query: 119 VWFILLGVYPYGSYVMYSYMLAQRRKMF 146
++ YP G Y++Y+YM+ QR+K+
Sbjct: 550 TLIAIICTYPPGFYMLYTYMIKQRKKVL 633
>ref|XM_694691.3| PREDICTED: Danio rerio hypothetical protein LOC553326 (LOC553326),
mRNA
Length = 1959
Score = 85.9 bits (211), Expect = 4e-15, Method: Composition-based stats.
Identities = 50/149 (33%), Positives = 88/149 (59%), Gaps = 3/149 (2%)
Frame = +3
Query: 1 RSPVGTTLLQVLSRLIVLY---GAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANL 57
R+ V T +QV SR+ +++ ++R E + + VV W ++E+ RYSFY NL
Sbjct: 306 RTSVIVTGVQVCSRIFMVWFITNSIRQIQNEES----VILFVVVWTVTEITRYSFYTFNL 473
Query: 58 LNTTAPPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYN 117
LN + W RY+ F+V+YP+G+ GE+ ++ ALPY+++ +++ +PNK N +F +Y
Sbjct: 474 LNHLPYFIKWARYNMFIVMYPLGVVGELLTIHAALPYVRRSGMYSLRLPNKYNVSFDYYY 653
Query: 118 SVWFILLGVYPYGSYVMYSYMLAQRRKMF 146
+ ++L P +Y +ML QRR++
Sbjct: 654 FLIIVMLSYIPLFPQ-LYFHMLRQRRRVL 737
>ref|XM_649162.2| Entamoeba histolytica HM-1:IMSS protein tyrosine phosphatase,
putative, mRNA
Length = 673
Score = 85.9 bits (211), Expect = 4e-15, Method: Composition-based stats.
Identities = 57/146 (39%), Positives = 87/146 (59%), Gaps = 1/146 (0%)
Frame = +1
Query: 2 SPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNTT 61
SP+GTT+ QV SR++++ L +R+L F+ + AW ++EVIRYSFY L
Sbjct: 205 SPLGTTITQVFSRVVLV---AVLEYIPESRALGFLLLGCAWSVTEVIRYSFYSFKLFGLA 375
Query: 62 AP-PLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSVW 120
P PL W RYS F+VLYP+G++GE+ L+K+LPY + + + F +W
Sbjct: 376 VPYPLLWCRYSFFIVLYPMGVSGEVITLFKSLPYFRTVTVFGL---------FPASYIIW 528
Query: 121 FILLGVYPYGSYVMYSYMLAQRRKMF 146
++L P G Y++Y YML+QR+K+
Sbjct: 529 ALILYYIP-GLYMLYKYMLSQRKKVL 603
>gb|BC010353.1| Homo sapiens protein tyrosine phosphatase-like (proline instead of
catalytic arginine), member A, mRNA (cDNA clone
MGC:13358 IMAGE:4293342), complete cds
Length = 1029
Score = 85.9 bits (211), Expect = 4e-15, Method: Composition-based stats.
Identities = 45/115 (39%), Positives = 74/115 (64%), Gaps = 2/115 (1%)
Frame = +1
Query: 34 AFVQMVVAWCLSEVIRYSFYGANLLNTTAPPLTWLRYSAFMVLYPVGITGEIGCLYKALP 93
+ V +VAW ++E+ RYSFY +LL+ + W RY+ F++LYPVG+ GE+ +Y ALP
Sbjct: 538 SVVLFLVAWTVTEITRYSFYTFSLLDHLPYFIKWARYNFFIILYPVGVAGELLTIYAALP 717
Query: 94 YIKKHKPWTVEMPNKLNFTFSWYNSVWFILLGVYPYGSYV--MYSYMLAQRRKMF 146
++KK +++ +PNK N +F +Y +F+L+ + Y +Y +ML QRRK+
Sbjct: 718 HVKKTGMFSIRLPNKYNVSFDYY---YFLLITMASYIPLFPQLYFHMLRQRRKVL 873
>ref|XM_001622638.1| Nematostella vectensis predicted protein (NEMVEDRAFT_v1g140243)
partial mRNA
Length = 648
Score = 85.9 bits (211), Expect = 4e-15, Method: Composition-based stats.
Identities = 55/146 (37%), Positives = 85/146 (58%)
Frame = +1
Query: 1 RSPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNT 60
RS V T QV SRL +++ A+ E S+ V AW ++EVIRY FY +L++
Sbjct: 187 RSSVFLTGFQVASRLFLVW-AILYSVPEVQDSIGVAAAVAAWSVTEVIRYLFYVCSLVSV 363
Query: 61 TAPPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSVW 120
L W RY+ F LYP+G+TGE+ +Y +LP+++K ++V +PN LN FS+Y +
Sbjct: 364 LPYALQWCRYTFFFFLYPIGVTGELVAIYASLPFVQKSGIYSVALPNPLNVGFSYYFFLI 543
Query: 121 FILLGVYPYGSYVMYSYMLAQRRKMF 146
++L P +Y +M+ QRRK+
Sbjct: 544 AVMLSYIPIFPQ-LYFHMIGQRRKVL 618
>ref|NM_014241.3| Homo sapiens protein tyrosine phosphatase-like (proline instead of
catalytic arginine), member A (PTPLA), mRNA
Length = 1323
Score = 85.9 bits (211), Expect = 4e-15, Method: Composition-based stats.
Identities = 45/115 (39%), Positives = 74/115 (64%), Gaps = 2/115 (1%)
Frame = +3
Query: 34 AFVQMVVAWCLSEVIRYSFYGANLLNTTAPPLTWLRYSAFMVLYPVGITGEIGCLYKALP 93
+ V +VAW ++E+ RYSFY +LL+ + W RY+ F++LYPVG+ GE+ +Y ALP
Sbjct: 534 SVVLFLVAWTVTEITRYSFYTFSLLDHLPYFIKWARYNFFIILYPVGVAGELLTIYAALP 713
Query: 94 YIKKHKPWTVEMPNKLNFTFSWYNSVWFILLGVYPYGSYV--MYSYMLAQRRKMF 146
++KK +++ +PNK N +F +Y +F+L+ + Y +Y +ML QRRK+
Sbjct: 714 HVKKTGMFSIRLPNKYNVSFDYY---YFLLITMASYIPLFPQLYFHMLRQRRKVL 869
>emb|CR608689.1| full-length cDNA clone CS0DC020YD04 of Neuroblastoma Cot
25-normalized of Homo sapiens (human)
Length = 940
Score = 85.9 bits (211), Expect = 4e-15, Method: Composition-based stats.
Identities = 45/115 (39%), Positives = 74/115 (64%), Gaps = 2/115 (1%)
Frame = +3
Query: 34 AFVQMVVAWCLSEVIRYSFYGANLLNTTAPPLTWLRYSAFMVLYPVGITGEIGCLYKALP 93
+ V +VAW ++E+ RYSFY +LL+ + W RY+ F++LYPVG+ GE+ +Y ALP
Sbjct: 489 SVVLFLVAWTVTEITRYSFYTFSLLDHLPYFIKWARYNFFIILYPVGVAGELLTIYAALP 668
Query: 94 YIKKHKPWTVEMPNKLNFTFSWYNSVWFILLGVYPYGSYV--MYSYMLAQRRKMF 146
++KK +++ +PNK N +F +Y +F+L+ + Y +Y +ML QRRK+
Sbjct: 669 HVKKTGMFSIRLPNKYNVSFDYY---YFLLITMASYIPLFPQLYFHMLRQRRKVL 824
>ref|XM_001734739.1| Entamoeba dispar SAW760 ptpla domain protein, putative EDI_053980
mRNA, complete cds
Length = 657
Score = 85.9 bits (211), Expect = 4e-15, Method: Composition-based stats.
Identities = 58/146 (39%), Positives = 90/146 (61%), Gaps = 1/146 (0%)
Frame = +1
Query: 2 SPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNTT 61
SP+GTT+ QV SR++++ L +R+L F+ + AW ++EVIRYSFY L
Sbjct: 205 SPLGTTITQVFSRVVLV---AVLEYIPESRALGFLLLGCAWSVTEVIRYSFYSFKLFGLP 375
Query: 62 AP-PLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSVW 120
P PL W RYS F+VLYP+G++GE+ L+K+LPY + + + F S+ +W
Sbjct: 376 VPYPLLWCRYSFFIVLYPMGVSGEVITLFKSLPYFRTVTVFGL-------FPVSYI--IW 528
Query: 121 FILLGVYPYGSYVMYSYMLAQRRKMF 146
++L P G Y++Y+YML+QR+K+
Sbjct: 529 ALILYYIP-GLYMLYTYMLSQRKKVL 603
>emb|AL832532.1|HSM803841 Homo sapiens mRNA; cDNA DKFZp547H0216 (from clone DKFZp547H0216)
Length = 3712
Score = 85.5 bits (210), Expect = 5e-15, Method: Composition-based stats.
Identities = 43/108 (39%), Positives = 73/108 (67%)
Frame = +2
Query: 39 VVAWCLSEVIRYSFYGANLLNTTAPPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKH 98
V+AW ++E+IRYSFY +LLN + W RY+ F+VLYP+G++GE+ +Y ALP++++
Sbjct: 32 VIAWTITEIIRYSFYTFSLLNHLPYLIKWARYTLFIVLYPMGVSGELLTIYAALPFVRQA 211
Query: 99 KPWTVEMPNKLNFTFSWYNSVWFILLGVYPYGSYVMYSYMLAQRRKMF 146
+++ +PNK NF+F +Y + I++ P +Y +M+ QRRK+
Sbjct: 212 GLYSISLPNKYNFSFDYYAFLILIMISYIPIFPQ-LYFHMIHQRRKIL 352
>ref|XM_002172514.1| Schizosaccharomyces japonicus yFS275 protein tyrosine phosphatase,
mRNA
Length = 621
Score = 85.5 bits (210), Expect = 5e-15, Method: Composition-based stats.
Identities = 56/144 (38%), Positives = 80/144 (55%)
Frame = +1
Query: 1 RSPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNT 60
RS V TT +QV SR+++++G S ++ M+ AW ++EVIRY+FY NL
Sbjct: 205 RSSVVTTAIQVASRVLLVWGVCYPFPEVVRDSPIYLSMIFAWSVTEVIRYTFYACNLAKN 384
Query: 61 TAPPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSVW 120
L WLRYSAF+VLYP+G E + K L + PNK+ +W
Sbjct: 385 VPATLLWLRYSAFIVLYPIGAGSEFLLVLKTL-----RTAVSSWFPNKI---------IW 522
Query: 121 FILLGVYPYGSYVMYSYMLAQRRK 144
++L +YP G + MY+YML+QRRK
Sbjct: 523 PLILVIYPPGLWHMYTYMLSQRRK 594
>ref|XM_001377282.1| PREDICTED: Monodelphis domestica similar to protein tyrosine
phosphatase-like member A, splice variant PTPLAfl
(LOC100026832), mRNA
Length = 402
Score = 85.5 bits (210), Expect = 5e-15, Method: Composition-based stats.
Identities = 48/115 (41%), Positives = 74/115 (64%), Gaps = 2/115 (1%)
Frame = +1
Query: 34 AFVQMVVAWCLSEVIRYSFYGANLLNTTAPPLTWLRYSAFMVLYPVGITGEIGCLYKALP 93
+ V +VAW ++E+ RYSFY NLLN + W RY+ F++LYPVG+ GE+ +Y ALP
Sbjct: 34 SVVLFLVAWTVTEITRYSFYTFNLLNHLPYFIKWARYNFFIILYPVGVVGELLTIYAALP 213
Query: 94 YIKKHKPWTVEMPNKLNFTFSWYNSVWFILLGVYPYGSYV--MYSYMLAQRRKMF 146
Y+KK +++ +PNK N +F +Y +F+L+ + Y +Y +ML QRRK+
Sbjct: 214 YVKKSGMFSIRLPNKYNVSFDYY---YFLLITMASYIPLFPQLYFHMLRQRRKVL 369
>ref|XM_002192754.1| PREDICTED: Taeniopygia guttata similar to putative tyrosine
phosphatase (LOC100226789), mRNA
Length = 784
Score = 85.5 bits (210), Expect = 5e-15, Method: Composition-based stats.
Identities = 51/148 (34%), Positives = 88/148 (59%), Gaps = 2/148 (1%)
Frame = +1
Query: 1 RSPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNT 60
R+ V T +QV SR+ +++ + + + + +V W ++E+ RYSFY NLLN
Sbjct: 181 RTSVLVTGVQVSSRIFMVW-FIAHSIKQIQNEESVILFLVVWTVTEITRYSFYTFNLLNH 357
Query: 61 TAPPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSVW 120
+ W RY+ F+VLYP G+ GE+ +Y ALPY+KK +++ +PNK N +F +Y +
Sbjct: 358 LPYFIKWARYNFFIVLYPAGVAGELLTIYAALPYVKKTGMFSLRLPNKYNVSFDYY---Y 528
Query: 121 FILLGVYPYGSYV--MYSYMLAQRRKMF 146
F+++ ++ Y +Y +ML QRR++
Sbjct: 529 FLIIVMFSYVPLFPQLYFHMLRQRRRVL 612
>ref|NM_001021597.1| Schizosaccharomyces pombe phosphoprotein phosphatase (predicted)
(SPBC19C2.15c) partial mRNA
Length = 627
Score = 85.1 bits (209), Expect = 7e-15, Method: Composition-based stats.
Identities = 54/140 (38%), Positives = 82/140 (58%)
Frame = +1
Query: 6 TTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNTTAPPL 65
TT++QV SRL +++G S ++ M++AW ++E+IRY+FY NL L
Sbjct: 220 TTIIQVASRLYLVWGVCYPFSYVIEGSPIYLSMIIAWSITEIIRYAFYAFNLNGDIPAFL 399
Query: 66 TWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSVWFILLG 125
TWLRY+ F++LYP+G E + K+ I W++ NKL +W IL+
Sbjct: 400 TWLRYNTFLILYPIGAGSEFLLVLKS--RIAAQYVWSL---NKL---------LWPILMS 537
Query: 126 VYPYGSYVMYSYMLAQRRKM 145
+YP G Y+MY++MLAQRRK+
Sbjct: 538 IYPPGLYIMYTHMLAQRRKI 597
>ref|XM_001067746.1| PREDICTED: Rattus norvegicus similar to protein tyrosine
phosphatase-like (proline instead of catalytic
arginine), member a isoform 1, transcript variant 1
(LOC683916), mRNA
Length = 663
Score = 84.7 bits (208), Expect = 9e-15, Method: Composition-based stats.
Identities = 46/115 (40%), Positives = 74/115 (64%), Gaps = 2/115 (1%)
Frame = +1
Query: 34 AFVQMVVAWCLSEVIRYSFYGANLLNTTAPPLTWLRYSAFMVLYPVGITGEIGCLYKALP 93
+ V +V+W ++E+ RYSFY +LL+ + W RY+ F++LYPVG+ GE+ +Y ALP
Sbjct: 202 SVVLFLVSWTVTEITRYSFYTFSLLDHLPHFIKWARYNFFIILYPVGVAGELLTIYAALP 381
Query: 94 YIKKHKPWTVEMPNKLNFTFSWYNSVWFILLGVYPYGSYV--MYSYMLAQRRKMF 146
Y+KK ++V +PNK N +F +Y +F+L+ + Y +Y +ML QRRK+
Sbjct: 382 YVKKSGMFSVRLPNKYNVSFDYY---YFLLITMASYIPLFPQLYFHMLRQRRKVL 537
>ref|XM_001861436.1| Culex quinquefasciatus ptpla domain protein, mRNA
Length = 763
Score = 84.7 bits (208), Expect = 9e-15, Method: Composition-based stats.
Identities = 58/139 (41%), Positives = 74/139 (53%), Gaps = 1/139 (0%)
Frame = +1
Query: 7 TLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNTTAPP-L 65
TL QV R +V+ A+ T S V W L+E IRYS+Y +L P +
Sbjct: 244 TLAQVFGRSMVVVAAIDATPT-GKLSPGVPLCVFCWSLAETIRYSYYLMHLALARVPRFM 420
Query: 66 TWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSVWFILLG 125
TWLRY+ F+ LYP G GE+ +Y A YI W+V MPN+ NFTFS+Y W + LG
Sbjct: 421 TWLRYTMFIPLYPGGFIGELLSVYWAQDYIGSTDMWSVAMPNRYNFTFSFYYFTWIMALG 600
Query: 126 VYPYGSYVMYSYMLAQRRK 144
P MY +M QRRK
Sbjct: 601 YLPLFPQ-MYLHMFGQRRK 654
>emb|BX045200.1|CNS0971G Single read from an extremity of a full-length cDNA clone made from
Anopheles gambiae total adult females. 5-PRIME end of
clone FK0AAC19BA01 of strain 6-9 of Anopheles gambiae
(African malaria mosquito)
Length = 941
Score = 84.3 bits (207), Expect = 1e-14, Method: Composition-based stats.
Identities = 58/146 (39%), Positives = 83/146 (56%), Gaps = 1/146 (0%)
Frame = +1
Query: 2 SPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNTT 61
S V T LQV R +++ GA+ G +S + W L+E+IRYS+Y A+LL
Sbjct: 352 SNVAMTFLQVFGRCMIVAGAIE-GTPTGQKSPGLPLALFCWSLTEIIRYSYYVAHLLLPA 528
Query: 62 APPL-TWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSVW 120
P L WLRY+ F+ +YP G G + C A YI+ W+VE+PN+ NF+FS+Y +W
Sbjct: 529 VPSLLVWLRYTIFIPMYPCGFLGGLLCTNWAQSYIRDTGKWSVELPNRFNFSFSFYYFIW 708
Query: 121 FILLGVYPYGSYVMYSYMLAQRRKMF 146
+ + P MY +M AQRRK+F
Sbjct: 709 IMAVCYMPLFPQ-MYLHMFAQRRKVF 783
>gb|BC090424.1| Danio rerio hypothetical protein LOC553326, mRNA (cDNA clone
IMAGE:7137405), partial cds
Length = 1824
Score = 84.3 bits (207), Expect = 1e-14, Method: Composition-based stats.
Identities = 50/149 (33%), Positives = 87/149 (58%), Gaps = 3/149 (2%)
Frame = +2
Query: 1 RSPVGTTLLQVLSRLIVLY---GAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANL 57
R+ V T +QV SR+ +++ ++R E + + VV W ++E+ RYSFY NL
Sbjct: 143 RTSVIVTGVQVCSRIFMVWFITNSIRQIQNEES----VILFVVVWTVTEITRYSFYTFNL 310
Query: 58 LNTTAPPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYN 117
LN + W RY+ F+V+YP+G+ GE+ ++ ALPY+++ + + +PNK N +F +Y
Sbjct: 311 LNHLPYFIKWARYNMFIVMYPLGVVGELLTIHAALPYVRRSGMYFLRLPNKYNVSFDYYY 490
Query: 118 SVWFILLGVYPYGSYVMYSYMLAQRRKMF 146
+ ++L P +Y +ML QRR++
Sbjct: 491 FLIIVMLSYIPLFPQ-LYFHMLRQRRRVL 574
>ref|XM_001067857.1| PREDICTED: Rattus norvegicus similar to protein tyrosine
phosphatase-like (proline instead of catalytic
arginine), member a isoform 1, transcript variant 2
(LOC683916), mRNA
Length = 713
Score = 84.3 bits (207), Expect = 1e-14, Method: Composition-based stats.
Identities = 46/115 (40%), Positives = 74/115 (64%), Gaps = 2/115 (1%)
Frame = +1
Query: 34 AFVQMVVAWCLSEVIRYSFYGANLLNTTAPPLTWLRYSAFMVLYPVGITGEIGCLYKALP 93
+ V +V+W ++E+ RYSFY +LL+ + W RY+ F++LYPVG+ GE+ +Y ALP
Sbjct: 253 SVVLFLVSWTVTEITRYSFYTFSLLDHLPHFIKWARYNFFIILYPVGVAGELLTIYAALP 432
Query: 94 YIKKHKPWTVEMPNKLNFTFSWYNSVWFILLGVYPYGSYV--MYSYMLAQRRKMF 146
Y+KK ++V +PNK N +F +Y +F+L+ + Y +Y +ML QRRK+
Sbjct: 433 YVKKSGMFSVRLPNKYNVSFDYY---YFLLITMASYIPLFPQLYFHMLRQRRKVL 588
>emb|CR382132.1| Yarrowia lipolytica strain CLIB122 chromosome F complete sequence
Length = 4003362
Score = 84.3 bits (207), Expect = 1e-14, Method: Composition-based stats.
Identities = 51/147 (34%), Positives = 85/147 (57%), Gaps = 1/147 (0%)
Frame = +3
Query: 1 RSPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNT 60
RSP+ TT++Q+ SR +++G + T + F MV+AW ++EVIRYSFY NL
Sbjct: 1578087 RSPLQTTVMQIFSRFALVWGVLYQYPQTGT-DIFFTFMVIAWSVTEVIRYSFYALNLAGW 1578263
Query: 61 TAPPL-TWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSV 119
P W+RY+ F+VLYP+G++GE+ ++ A+ Y + +P+ F+ +
Sbjct: 1578264 GVPDWHQWIRYNFFLVLYPLGVSGEMKLMWNAIAYARTEQPY-----------FALFLKA 1578410
Query: 120 WFILLGVYPYGSYVMYSYMLAQRRKMF 146
+ ++P G Y++YS+ML QR K +
Sbjct: 1578411 AMV---IWPIGLYILYSHMLKQRSKHY 1578482
>ref|XM_001820227.1| Aspergillus oryzae RIB40 hypothetical protein partial mRNA
Length = 699
Score = 84.0 bits (206), Expect = 1e-14, Method: Composition-based stats.
Identities = 59/161 (36%), Positives = 90/161 (55%), Gaps = 15/161 (9%)
Frame = +1
Query: 1 RSPVGTTLLQVLSRLIVLYGAVRL----GD--------TEATR--SLAFVQMVVAWCLSE 46
R+PV TT +QV SRL++++G + L GD TE + AF+ + AW ++E
Sbjct: 241 RAPVTTTAMQVASRLLLIWGVMFLFHEQGDGTGIVGAPTETVKVGDYAFLGCLSAWGVTE 420
Query: 47 VIRYSFYGANLLNTTAPP-LTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEM 105
IRY F+ ++ P LTWLRY+ F VLYP+GIT E + KAL E
Sbjct: 421 CIRYGFFALQVMGAGVPGWLTWLRYNTFYVLYPLGITSECVMVVKAL-----------EP 567
Query: 106 PNKLNFTFSWYNSVWFILLGVYPYGSYVMYSYMLAQRRKMF 146
+ N + W+ ++LG+Y GSY++Y++M+AQR+K+
Sbjct: 568 AAEFNPLYRWF---LIVVLGIYVPGSYILYTHMIAQRKKVL 681
>ref|XM_001357286.2| Drosophila pseudoobscura pseudoobscura GA21658 (Dpse\GA21658), mRNA
Length = 1113
Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 52/137 (37%), Positives = 77/137 (56%)
Frame = +1
Query: 8 LLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNTTAPPLTW 67
QV R +L+ + L + + F ++ W L E+IRY FY + LL LTW
Sbjct: 658 FFQVSGRNFILFLMIELEPRMHAKPVVFYVFII-WSLVELIRYPFYLSQLLGREVGLLTW 834
Query: 68 LRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSVWFILLGVY 127
LRY+ ++ LYP+GI E + + +PYI++ K +TVEMPNKLNFTF + LL +
Sbjct: 835 LRYTIWIPLYPMGIVCEGIIVLRNIPYIEETKRFTVEMPNKLNFTFDMVLFLKLYLLLLI 1014
Query: 128 PYGSYVMYSYMLAQRRK 144
G+Y++ S+M R K
Sbjct: 1015LPGTYLVMSHMSKLRAK 1065
>ref|XM_002018867.1| Drosophila persimilis GL25700 (Dper\GL25700), mRNA
Length = 1113
Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 52/137 (37%), Positives = 77/137 (56%)
Frame = +1
Query: 8 LLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNTTAPPLTW 67
QV R +L+ + L + + F ++ W L E+IRY FY + LL LTW
Sbjct: 658 FFQVSGRNFILFLMIELEPRMHAKPVVFYVFII-WSLVELIRYPFYLSQLLGREVGLLTW 834
Query: 68 LRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSVWFILLGVY 127
LRY+ ++ LYP+GI E + + +PYI++ K +TVEMPNKLNFTF + LL +
Sbjct: 835 LRYTIWIPLYPMGIVCEGIIVLRNIPYIEETKRFTVEMPNKLNFTFDMVLFLKLYLLLLI 1014
Query: 128 PYGSYVMYSYMLAQRRK 144
G+Y++ S+M R K
Sbjct: 1015LPGTYLVMSHMSKLRAK 1065
>ref|XM_505309.1| Yarrowia lipolytica YALI0F11935p (YALI0F11935g) mRNA, complete cds
Length = 624
Score = 83.6 bits (205), Expect = 2e-14, Method: Composition-based stats.
Identities = 51/147 (34%), Positives = 85/147 (57%), Gaps = 1/147 (0%)
Frame = +1
Query: 1 RSPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNT 60
RSP+ TT++Q+ SR +++G + T + F MV+AW ++EVIRYSFY NL
Sbjct: 202 RSPLQTTVMQIFSRFALVWGVLYQYPQTGT-DIFFTFMVIAWSVTEVIRYSFYALNLAGW 378
Query: 61 TAPPL-TWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSV 119
P W+RY+ F+VLYP+G++GE+ ++ A+ Y + +P+ F+ +
Sbjct: 379 GVPDWHQWIRYNFFLVLYPLGVSGEMKLMWNAIAYARTEQPY-----------FALFLKA 525
Query: 120 WFILLGVYPYGSYVMYSYMLAQRRKMF 146
+ ++P G Y++YS+ML QR K +
Sbjct: 526 AMV---IWPIGLYILYSHMLKQRSKHY 597
>ref|XM_001498261.1| PREDICTED: Equus caballus similar to protein tyrosine
phosphatase-like protein PTPLA (LOC100068422), mRNA
Length = 706
Score = 83.2 bits (204), Expect = 2e-14, Method: Composition-based stats.
Identities = 46/115 (40%), Positives = 74/115 (64%), Gaps = 2/115 (1%)
Frame = +1
Query: 34 AFVQMVVAWCLSEVIRYSFYGANLLNTTAPPLTWLRYSAFMVLYPVGITGEIGCLYKALP 93
+ V +VAW ++E+ RYSFY +LL+ + W RY+ F++LYPVG+ GE+ +Y ALP
Sbjct: 247 SVVLFLVAWTVTEITRYSFYTFSLLDHLPYFIKWARYTFFIILYPVGVAGELLTIYAALP 426
Query: 94 YIKKHKPWTVEMPNKLNFTFSWYNSVWFILLGVYPYGSYV--MYSYMLAQRRKMF 146
Y+KK +++ +PNK N +F +Y +F+L+ + Y +Y +ML QRRK+
Sbjct: 427 YVKKTGMFSIRLPNKYNVSFDYY---YFLLITMASYIPLFPQLYFHMLRQRRKVL 582
>dbj|AK074605.1| Homo sapiens cDNA FLJ90124 fis, clone HEMBA1007241, moderately
similar to Protein tyrosine phosphatase-like protein
PTPLB
Length = 1619
Score = 83.2 bits (204), Expect = 3e-14, Method: Composition-based stats.
Identities = 42/107 (39%), Positives = 72/107 (67%)
Frame = +1
Query: 40 VAWCLSEVIRYSFYGANLLNTTAPPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHK 99
+AW ++E+IRYSFY +LLN + W RY+ F+VLYP+G++GE+ +Y ALP++++
Sbjct: 1 IAWTITEIIRYSFYTFSLLNHLPYLIKWARYTLFIVLYPMGVSGELLTIYAALPFVRQAG 180
Query: 100 PWTVEMPNKLNFTFSWYNSVWFILLGVYPYGSYVMYSYMLAQRRKMF 146
+++ +PNK NF+F +Y + I++ P +Y +M+ QRRK+
Sbjct: 181 LYSISLPNKYNFSFDYYAFLILIMISYIPIFPQ-LYFHMIHQRRKIL 318
>gb|EU413006.1| TSA: Hippoglossus hippoglossus all_halibut.2012.C1 mRNA sequence
Length = 783
Score = 82.0 bits (201), Expect = 6e-14, Method: Composition-based stats.
Identities = 46/149 (30%), Positives = 87/149 (58%), Gaps = 3/149 (2%)
Frame = +2
Query: 1 RSPVGTTLLQVLSRLIVLY---GAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANL 57
R+ V T +QV SR+ +++ ++R E + + +V W ++E+ RYS+Y NL
Sbjct: 284 RTSVIVTGVQVCSRIFMVWFITNSIRQIQNEES----VILFLVVWTVTEITRYSYYTFNL 451
Query: 58 LNTTAPPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYN 117
L+ + W RY+ F+VLYP+G+ GE+ +Y ALP++++ +++ +PNK N + +Y
Sbjct: 452 LHHLPYFIKWARYNLFIVLYPLGVVGELFTIYAALPFVRRSGMYSMRLPNKYNVSSDYYY 631
Query: 118 SVWFILLGVYPYGSYVMYSYMLAQRRKMF 146
+ ++L P + + +ML QRR++
Sbjct: 632 CLIIVMLSYIPLFPQLFF-HMLRQRRRVL 715
>gb|EZ010398.1| TSA: Acropora millepora SeqIndex11407, mRNA sequence
Length = 1622
Score = 82.0 bits (201), Expect = 6e-14, Method: Composition-based stats.
Identities = 47/140 (33%), Positives = 79/140 (56%), Gaps = 2/140 (1%)
Frame = +1
Query: 1 RSPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNT 60
++ V +QV R +VL+ V + E + A + + W L EV+RY FY + ++N
Sbjct: 784 KTGVMAPFIQVFGRNMVLFLIV-VAHKELHKQAAVFGLFLVWSLIEVVRYPFYISQVVNK 960
Query: 61 TAPPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLN--FTFSWYNS 118
PL WLRY+ ++ LYP+GI E +++A+P + K + ++ +PN LN F+FSW+
Sbjct: 961 RIEPLIWLRYTMWIPLYPLGIFFEGTLIWRAIPLLDKSERFSFHLPNALNFSFSFSWFLR 1140
Query: 119 VWFILLGVYPYGSYVMYSYM 138
V+ IL+ G + M +M
Sbjct: 1141VYLILMVA---GGWYMMKHM 1191
>ref|XM_001806059.1| Phaeosphaeria nodorum SN15 hypothetical protein partial mRNA
Length = 970
Score = 81.6 bits (200), Expect = 7e-14, Method: Composition-based stats.
Identities = 52/148 (35%), Positives = 88/148 (59%), Gaps = 3/148 (2%)
Frame = +2
Query: 1 RSPVGTTLLQVLSRLIVLY--GAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLL 58
R+P+ TTL+QV SR ++++ + + + S A+ M++AW ++EVIRYS++ NL
Sbjct: 410 RAPLLTTLMQVSSRFLLVHVIASPYAFPSTSRPSPAYTTMLLAWSITEVIRYSYFVFNLS 589
Query: 59 NTTAPPL-TWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYN 117
P L TWLRY+ F+VLYP+G+ E +YKA +E +++N + +
Sbjct: 590 GVGVPKLWTWLRYNTFLVLYPLGVASECWLVYKA-----------IEPASRINEVYGY-- 730
Query: 118 SVWFILLGVYPYGSYVMYSYMLAQRRKM 145
V + +L VY G YV++++ML QR ++
Sbjct: 731 -VLYAILAVYVPGIYVLFTHMLKQRARL 811
>gb|BC082913.1| Xenopus laevis hypothetical LOC494792, mRNA (cDNA clone MGC:85421
IMAGE:6933935), complete cds
Length = 1236
Score = 81.3 bits (199), Expect = 9e-14, Method: Composition-based stats.
Identities = 40/108 (37%), Positives = 67/108 (62%)
Frame = +3
Query: 39 VVAWCLSEVIRYSFYGANLLNTTAPPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKH 98
+V W ++E+ RYS+Y LLN + W RY+ F+VLYPVG+ GE+ +Y ALP+++K
Sbjct: 423 LVVWTVTEITRYSYYTFKLLNHLPYFIKWARYNLFIVLYPVGVVGELLTIYAALPHVRKS 602
Query: 99 KPWTVEMPNKLNFTFSWYNSVWFILLGVYPYGSYVMYSYMLAQRRKMF 146
+++ +PNK N +F +Y + ++ P +Y +ML QRR++
Sbjct: 603 AMYSLRLPNKYNVSFDYYYFLIIVMCSYIPLFPQ-LYFHMLRQRRRVL 743
>gb|BC158448.1| Xenopus tropicalis hypothetical protein LOC100145048, mRNA (cDNA
clone IMAGE:6982717), partial cds
Length = 910
Score = 81.3 bits (199), Expect = 9e-14, Method: Composition-based stats.
Identities = 41/110 (37%), Positives = 70/110 (63%), Gaps = 2/110 (1%)
Frame = +2
Query: 39 VVAWCLSEVIRYSFYGANLLNTTAPPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKH 98
+V W ++E+ RYS+Y LLN + W RY+ F+VLYPVG+ GE+ +Y ALP+++K
Sbjct: 359 LVVWTVTEITRYSYYTFKLLNHLPYFIKWARYNLFIVLYPVGVVGELLTIYAALPHVRKS 538
Query: 99 KPWTVEMPNKLNFTFSWYNSVWFILLGVYPYGSYV--MYSYMLAQRRKMF 146
+++ +PNK N +F +Y +F+++ + Y +Y +ML QRR++
Sbjct: 539 AMYSLRLPNKYNVSFDYY---YFLIIAMCSYIPLFPQLYFHMLRQRRRVL 679
>gb|AF169286.1|AF169286 Mus musculus protein tyrosine phosphatase-like protein PTPLB
(Ptplb) mRNA, complete cds
Length = 1029
Score = 81.3 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 53/149 (35%), Positives = 90/149 (60%), Gaps = 4/149 (2%)
Frame = +2
Query: 2 SPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVI----RYSFYGANL 57
S V T QV+SR+ +++ AV E + + V+AW ++E+I RYSFY +L
Sbjct: 359 SSVVLTSFQVMSRVFLIW-AVTHSVKEVQAEDSVLLFVIAWTITEIITEIIRYSFYTFSL 535
Query: 58 LNTTAPPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYN 117
LN + W RY+ F+VLYP+G+TGE+ +Y ALP++++ +++ +PNK NF+F ++
Sbjct: 536 LNHLPYIIKWARYTLFIVLYPMGVTGELLTIYAALPFVRQAGLYSISLPNKYNFSFDYHA 715
Query: 118 SVWFILLGVYPYGSYVMYSYMLAQRRKMF 146
+ I++ P +Y +M+ QRRK+
Sbjct: 716 FLILIMISYIPLFPQ-LYFHMIHQRRKVL 799
>ref|XM_001830484.1| Coprinopsis cinerea okayama7#130 hypothetical protein (CC1G_11544)
partial mRNA
Length = 861
Score = 81.3 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 54/148 (36%), Positives = 80/148 (54%), Gaps = 2/148 (1%)
Frame = +1
Query: 1 RSPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNT 60
RSPV TT +QV SRL +++G + E + + MV+AW ++EVIRY+FY NLL T
Sbjct: 397 RSPVVTTTMQVSSRLFLVWG-ITAQFAETHSNPIYASMVLAWSVTEVIRYTFYALNLLGT 573
Query: 61 TAPPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWY--NS 118
++ L WLRY+ F VLYP+G + E + LP++ P + W
Sbjct: 574 SSQILLWLRYTTFYVLYPLGASSEAFLILSTLPHVGVF-PKCLHATGGSKPVSEWNVGQL 750
Query: 119 VWFILLGVYPYGSYVMYSYMLAQRRKMF 146
+L ++ G Y MY+YM+ QR K+
Sbjct: 751 ARGVLFLIWWPGLYAMYTYMIGQRGKVL 834
>ref|NM_001048568.1| Oryza sativa (japonica cultivar-group) Os01g0150400 (Os01g0150400)
mRNA, complete cds
Length = 774
Score = 80.9 bits (198), Expect = 1e-13, Method: Composition-based stats.
Identities = 40/96 (41%), Positives = 61/96 (63%), Gaps = 1/96 (1%)
Frame = +1
Query: 38 MVVAWCLSEVIRYSFYG-ANLLNTTAPPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIK 96
++++W ++EVIRYSF+G T L WLRYS F+V YPVG+ E+G +Y A P++K
Sbjct: 271 LIISWSITEVIRYSFFGIKESFGFTPSWLLWLRYSTFIVCYPVGMVSEVGLIYIAFPFMK 450
Query: 97 KHKPWTVEMPNKLNFTFSWYNSVWFILLGVYPYGSY 132
+ + + MPNK NF+F ++ F L+ +Y G Y
Sbjct: 451 ASEKYCIGMPNKWNFSFDYFYFSTF-LMALYVPGCY 555
>dbj|AP006500.2| Cyanidioschyzon merolae DNA, chromosome 18, complete genome, complete
sequence
Length = 1253087
Score = 80.9 bits (198), Expect = 1e-13, Method: Composition-based stats.
Identities = 56/158 (35%), Positives = 85/158 (53%), Gaps = 14/158 (8%)
Frame = +3
Query: 1 RSPVGTTLLQVLSRLIVLYGAVR--LGDTEATRSLAFVQMVVAWCLSEVIRYSFY----- 53
R+ + TT LQ+ SRL VL+ V E + ++ ++ AW +EV+RY+++
Sbjct: 17049 RASLATTALQICSRLFVLWFIVASFASKYEECINTGYLALLSAWSATEVVRYAYFTVLSY 17228
Query: 54 ------GANLLNTTAPP-LTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMP 106
G ++ P LTWLRYS F+VLYP+G++ EI + ALP+I++ V MP
Sbjct: 17229 GNMASRGLLSVHEVVPRWLTWLRYSLFLVLYPIGVSAEIWLVLGALPWIRETNFLRVRMP 17408
Query: 107 NKLNFTFSWYNSVWFILLGVYPYGSYVMYSYMLAQRRK 144
N NF F + LLG P G +Y +ML QR++
Sbjct: 17409 NTFNFAFDFSIFCAIALLGYIP-GLPFLYGHMLKQRKR 17519
>gb|EZ015849.1| TSA: Acropora millepora SeqIndex2053, mRNA sequence
Length = 577
Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 46/122 (37%), Positives = 70/122 (57%)
Frame = +1
Query: 7 TLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNTTAPPLT 66
T QV SRL V + A+ S + + AW ++EVIRYSFY +L+N+ L
Sbjct: 178 TAFQVASRLFVTW-AIAHSVPXIHDSPGVMAFIFAWSITEVIRYSFYAFSLINSLPYFLQ 354
Query: 67 WLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSVWFILLGV 126
W R + F +LYP+G+TGE+ +Y +LPY+ K ++V +PN NF F +Y+ V ++
Sbjct: 355 WCRXTFFYILYPIGVTGELVTMYSSLPYLSKSGMYSVRLPNAFNFGFDFYSLVIVLMFSY 534
Query: 127 YP 128
P
Sbjct: 535 IP 540
>ref|XM_458450.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0C18733g)
partial mRNA
Length = 660
Score = 80.1 bits (196), Expect = 2e-13, Method: Composition-based stats.
Identities = 52/149 (34%), Positives = 86/149 (57%), Gaps = 3/149 (2%)
Frame = +1
Query: 1 RSPVGTTLLQVLSRLIVLYGAVRL-GDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLN 59
+SP+ TT+ QV SRL+++ G +L ++ A F+ + ++W ++E+IRYS+Y +NL +
Sbjct: 220 KSPLFTTVTQVFSRLLIVLGICQLLPESPANVHWCFITLCLSWSITEIIRYSYYASNLRS 399
Query: 60 TTAPP--LTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYN 117
P LTW RYS F VLYP G+ E+ +Y +L E N + + +SW+
Sbjct: 400 PDKVPYYLTWARYSLFYVLYPTGVMSEMFMVYLSLD----------EAQNVVGYLYSWFL 549
Query: 118 SVWFILLGVYPYGSYVMYSYMLAQRRKMF 146
+L Y G Y++Y+YM+ QR+K+
Sbjct: 550 KA---MLVTYLPGLYMLYTYMIKQRKKVL 627
>gb|AY232134.1| Drosophila yakuba clone yak-ad_CG6746 mRNA sequence
Length = 642
Score = 80.1 bits (196), Expect = 2e-13, Method: Composition-based stats.
Identities = 35/90 (38%), Positives = 60/90 (66%)
Frame = +1
Query: 39 VVAWCLSEVIRYSFYGANLLNTTAPPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKH 98
++AW ++E+IRY +Y N++ + +LRY+ F+VLYP+G+TGE+ C + A Y +++
Sbjct: 373 LLAWAITEIIRYGYYALNIVKVVPHFVVFLRYTTFIVLYPIGVTGELLCFWWAQSYAREN 552
Query: 99 KPWTVEMPNKLNFTFSWYNSVWFILLGVYP 128
W+V MPNK N TFS++ +W ++ P
Sbjct: 553 SVWSVVMPNKWNATFSYFGFLWIVMCTCSP 642
>dbj|AP006852.1| Candida albicans genomic DNA, chromosome 7, complete sequence
Length = 949626
Score = 80.1 bits (196), Expect = 2e-13, Method: Composition-based stats.
Identities = 51/147 (34%), Positives = 85/147 (57%), Gaps = 1/147 (0%)
Frame = +3
Query: 1 RSPVGTTLLQVLSRLIVLYGAVR-LGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLN 59
+SP+ TT+ QV SRL++++G + L D+ A ++ + ++W ++E+IRYS+Y +NL
Sbjct: 659739 KSPLFTTVTQVFSRLLIVWGIHQYLPDSPANYHWCYITLCLSWSITEIIRYSYYASNLTG 659918
Query: 60 TTAPPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSV 119
LTWLRY+ F VLYP G+ E+ + +L N+ F + W +
Sbjct: 659919 QVPFWLTWLRYTTFYVLYPTGVFSEVCLVILSL--------------NEAGFYYGW---I 660047
Query: 120 WFILLGVYPYGSYVMYSYMLAQRRKMF 146
I+L VY G Y++Y+YM+ QR+K+
Sbjct: 660048 LKIILVVYIPGFYMLYTYMIKQRKKVL 660128
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 48/148 (32%), Positives = 80/148 (54%), Gaps = 3/148 (2%)
Frame = +3
Query: 2 SPVGTTLLQVLSRLIVLYG-AVRLGDTEATRSLA-FVQMVVAWCLSEVIRYSFYGANLLN 59
+P+ T LLQ +RLI++ G V + ++ A + F + +AW ++EVIRY FY +
Sbjct: 658980 TPIPTLLLQSFARLIIMVGICVVIPESLANYDITVFSGLTLAWSITEVIRYGFYVIKMFG 659159
Query: 60 TTAPP-LTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNS 118
P L WLRYSAF+VLYP+G+ E ++ + Y+K P ++Y
Sbjct: 659160 IATPYWLVWLRYSAFLVLYPLGLVCESTTVFNSYDYVKTKIP-------------AYYYF 659300
Query: 119 VWFILLGVYPYGSYVMYSYMLAQRRKMF 146
+ + ++ +Y G +Y+YM+ QR K+
Sbjct: 659301 LKYAIV-LYIPGFLYLYTYMIGQRTKVL 659381
>emb|AJ250310.1|CAL250310 Candida albicans cyr1 gene (partial), chs6 gene, yjl097b gene,
yjl097a gene, ykr049 gene, ynl191 gene and sap185 gene
Length = 12662
Score = 80.1 bits (196), Expect = 2e-13, Method: Composition-based stats.
Identities = 51/147 (34%), Positives = 85/147 (57%), Gaps = 1/147 (0%)
Frame = -1
Query: 1 RSPVGTTLLQVLSRLIVLYGAVR-LGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLN 59
+SP+ TT+ QV SRL++++G + L D+ A ++ + ++W ++E+IRYS+Y +NL
Sbjct: 6245 KSPLFTTVTQVFSRLLIVWGIHQYLPDSPANYHWCYITLCLSWSITEIIRYSYYASNLTG 6066
Query: 60 TTAPPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSV 119
LTWLRY+ F VLYP G+ E+ + +L N+ F + W +
Sbjct: 6065 QVPFWLTWLRYTTFYVLYPTGVFSEVCLVILSL--------------NEAGFYYGW---I 5937
Query: 120 WFILLGVYPYGSYVMYSYMLAQRRKMF 146
I+L VY G Y++Y+YM+ QR+K+
Sbjct: 5936 LKIILVVYIPGFYMLYTYMIKQRKKVL 5856
Score = 64.3 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 48/148 (32%), Positives = 80/148 (54%), Gaps = 3/148 (2%)
Frame = -2
Query: 2 SPVGTTLLQVLSRLIVLYG-AVRLGDTEATRSLA-FVQMVVAWCLSEVIRYSFYGANLLN 59
+P+ T LLQ +RLI++ G V + ++ A + F + +AW ++EVIRY FY +
Sbjct: 7003 TPIPTLLLQSFARLIIMVGICVVIPESLANYDITVFSGLTLAWSITEVIRYGFYVIKMFG 6824
Query: 60 TTAPP-LTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNS 118
P L WLRYSAF+VLYP+G+ E ++ + Y+K P ++Y
Sbjct: 6823 IATPYWLVWLRYSAFLVLYPLGLVCESTTVFNSYDYVKTKIP-------------AYYYF 6683
Query: 119 VWFILLGVYPYGSYVMYSYMLAQRRKMF 146
+ + ++ +Y G +Y+YM+ QR K+
Sbjct: 6682 LKYAIV-LYIPGFLYLYTYMIGQRTKVL 6602
>ref|XM_711818.1| Candida albicans SC5314 potential protein tyrosine phosphatase-like
protein (TPL1) mRNA, complete cds
Length = 603
Score = 80.1 bits (196), Expect = 2e-13, Method: Composition-based stats.
Identities = 51/147 (34%), Positives = 85/147 (57%), Gaps = 1/147 (0%)
Frame = +1
Query: 1 RSPVGTTLLQVLSRLIVLYGAVR-LGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLN 59
+SP+ TT+ QV SRL++++G + L D+ A ++ + ++W ++E+IRYS+Y +NL
Sbjct: 196 KSPLFTTVTQVFSRLLIVWGIHQYLPDSPANYHWCYITLCLSWSITEIIRYSYYASNLTG 375
Query: 60 TTAPPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSV 119
LTWLRY+ F VLYP G+ E+ + +L N+ F + W +
Sbjct: 376 QVPFWLTWLRYTTFYVLYPTGVFSEVCLVILSL--------------NEAGFYYGW---I 504
Query: 120 WFILLGVYPYGSYVMYSYMLAQRRKMF 146
I+L VY G Y++Y+YM+ QR+K+
Sbjct: 505 LKIILVVYIPGFYMLYTYMIKQRKKVL 585
>ref|XM_883820.1| Candida albicans hypothetical protein (CaJ7_0346) mRNA, complete
cds
Length = 603
Score = 80.1 bits (196), Expect = 2e-13, Method: Composition-based stats.
Identities = 51/147 (34%), Positives = 85/147 (57%), Gaps = 1/147 (0%)
Frame = +1
Query: 1 RSPVGTTLLQVLSRLIVLYGAVR-LGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLN 59
+SP+ TT+ QV SRL++++G + L D+ A ++ + ++W ++E+IRYS+Y +NL
Sbjct: 196 KSPLFTTVTQVFSRLLIVWGIHQYLPDSPANYHWCYITLCLSWSITEIIRYSYYASNLTG 375
Query: 60 TTAPPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSV 119
LTWLRY+ F VLYP G+ E+ + +L N+ F + W +
Sbjct: 376 QVPFWLTWLRYTTFYVLYPTGVFSEVCLVILSL--------------NEAGFYYGW---I 504
Query: 120 WFILLGVYPYGSYVMYSYMLAQRRKMF 146
I+L VY G Y++Y+YM+ QR+K+
Sbjct: 505 LKIILVVYIPGFYMLYTYMIKQRKKVL 585
>ref|XM_711885.1| Candida albicans SC5314 potential protein tyrosine phosphatase-like
protein (TPL1) mRNA, complete cds
Length = 603
Score = 80.1 bits (196), Expect = 2e-13, Method: Composition-based stats.
Identities = 51/147 (34%), Positives = 85/147 (57%), Gaps = 1/147 (0%)
Frame = +1
Query: 1 RSPVGTTLLQVLSRLIVLYGAVR-LGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLN 59
+SP+ TT+ QV SRL++++G + L D+ A ++ + ++W ++E+IRYS+Y +NL
Sbjct: 196 KSPLFTTVTQVFSRLLIVWGIHQYLPDSPANYHWCYITLCLSWSITEIIRYSYYASNLTG 375
Query: 60 TTAPPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSV 119
LTWLRY+ F VLYP G+ E+ + +L N+ F + W +
Sbjct: 376 QVPFWLTWLRYTTFYVLYPTGVFSEVCLVILSL--------------NEAGFYYGW---I 504
Query: 120 WFILLGVYPYGSYVMYSYMLAQRRKMF 146
I+L VY G Y++Y+YM+ QR+K+
Sbjct: 505 LKIILVVYIPGFYMLYTYMIKQRKKVL 585
>emb|CR382135.2| Debaryomyces hansenii strain CBS767 chromosome C complete sequence
Length = 1587442
Score = 79.3 bits (194), Expect = 3e-13, Method: Composition-based stats.
Identities = 52/149 (34%), Positives = 86/149 (57%), Gaps = 3/149 (2%)
Frame = +3
Query: 1 RSPVGTTLLQVLSRLIVLYGAVRL-GDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLN 59
+SP+ TT+ QV SRL+++ G +L ++ A F+ + ++W ++E+IRYS+Y +NL +
Sbjct: 1536096 KSPLFTTVTQVFSRLLIVLGICQLLPESPANVHWCFITLCLSWSITEIIRYSYYASNLRS 1536275
Query: 60 TTAPP--LTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYN 117
P LTW RYS F VLYP G+ E+ +Y +L E N + + +SW+
Sbjct: 1536276 PDKVPYYLTWARYSLFYVLYPTGVMSEMFMVYLSLD----------EAQNVVGYLYSWFL 1536425
Query: 118 SVWFILLGVYPYGSYVMYSYMLAQRRKMF 146
+L Y G Y++Y+YM+ QR+K+
Sbjct: 1536426 KA---MLVTYLPGLYMLYTYMIKQRKKVL 1536503
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 50/151 (33%), Positives = 77/151 (50%), Gaps = 5/151 (3%)
Frame = +3
Query: 1 RSPVGTTLLQVLSRLIVLYGAVRL--GDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLL 58
+S + T LLQ L+RL++ G G L++ + +AW ++EVIRYSF+ A L+
Sbjct: 1535256 KSSIPTVLLQFLARLLITVGISYYIPGSKGNFHFLSYTSLSLAWSVTEVIRYSFFSAKLV 1535435
Query: 59 NTTAP-PLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYN 117
P L WLRYS F VLYP G+ E+ +Y +L ++ +
Sbjct: 1535436 KNDIPYSLLWLRYSTFFVLYPAGLFSELYVVYLSLDSVRGSGYY---------------- 1535567
Query: 118 SVWFIL--LGVYPYGSYVMYSYMLAQRRKMF 146
WF++ L +Y G V+Y YM+ QR+K+
Sbjct: 1535568 --WFLIFALTMYIPGFVVLYGYMIKQRKKVL 1535654
>ref|XM_001908071.1| Podospora anserina DSM 980 hypothetical protein (PODANSg5141)
partial mRNA
Length = 702
Score = 79.3 bits (194), Expect = 4e-13, Method: Composition-based stats.
Identities = 55/145 (37%), Positives = 79/145 (54%), Gaps = 2/145 (1%)
Frame = +1
Query: 2 SPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNTT 61
+PV TTL+QV SRL ++Y A+ L + S + M+ AW +EVIRY+++ +
Sbjct: 247 APVFTTLMQVASRLFLMY-AITLPFPQLNASYWYSSMLCAWATTEVIRYTYFVFKQFDRI 423
Query: 62 APPLTWLRYSAFMVLYPVGITGEIGCLYKAL--PYIKKHKPWTVEMPNKLNFTFSWYNSV 119
L WLRYSAF++LYP+GI+ E+ +AL P + W+ SWY
Sbjct: 424 PASLHWLRYSAFLILYPIGISSEVAMTLRALWGPASSEAFAWS-----------SWYPYA 570
Query: 120 WFILLGVYPYGSYVMYSYMLAQRRK 144
+L Y GS V+Y +ML QRRK
Sbjct: 571 LGAVLLSYIPGSVVLYGHMLKQRRK 645
>gb|AC084677.1|CBRG47L22 Caenorhabditis briggsae cosmid G47L22, complete sequence
Length = 43559
Score = 71.2 bits (173), Expect(2) = 5e-13, Method: Composition-based stats.
Identities = 48/136 (35%), Positives = 76/136 (55%), Gaps = 17/136 (12%)
Frame = -2
Query: 28 EATRSLAFVQMVVAWCLSEVIRYSFYGANLLNTTAPP-LTWLR--------------YSA 72
+A S+ ++VAW ++EVIRYSFY ++L P L WLR Y+
Sbjct: 16216 QARYSIGVPLLLVAWSVTEVIRYSFYALSVLKQPIPYFLLWLR*GIKNDF*KVNCFRYTL 16037
Query: 73 FMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSVWFILLGVYPY--G 130
F VLYP+G++GE+ L+ +L + + K T+EMPN+LN S++ W +++ Y G
Sbjct: 16036 FYVLYPMGVSGELLTLFASLKEVDEKKILTLEMPNRLNMGISFW---WVLIIAALTYIPG 15866
Query: 131 SYVMYSYMLAQRRKMF 146
+Y YM+ QR+K+
Sbjct: 15865 FPQLYFYMIGQRKKVL 15818
Score = 27.7 bits (60), Expect(2) = 5e-13, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 20/27 (74%)
Frame = -1
Query: 1 RSPVGTTLLQVLSRLIVLYGAVRLGDT 27
RSPVGTT +QV SR+++++ + L T
Sbjct: 16343 RSPVGTTAMQVTSRVVLVWPILHLCST 16263
>ref|XM_002042145.1| Drosophila sechellia GM25510 (Dsec\GM25510), mRNA
Length = 1116
Score = 79.0 bits (193), Expect = 6e-13, Method: Composition-based stats.
Identities = 53/145 (36%), Positives = 82/145 (56%), Gaps = 2/145 (1%)
Frame = +1
Query: 2 SPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNTT 61
SPV QV R +LY + + + + F ++ W L E++RY +Y A LL
Sbjct: 643 SPV-VPFFQVSGRNFILYLMIDMEPRMYAKPVVFYVFII-WSLVELVRYPYYLAQLLGRE 816
Query: 62 APPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTF--SWYNSV 119
LTWLRY+ ++ LYP+GI E + + +PYI++ K +TVEMPN N TF + + +
Sbjct: 817 VGLLTWLRYTIWIPLYPMGILCEGIIVLRNIPYIEETKRFTVEMPNSWNITFDMALFLKI 996
Query: 120 WFILLGVYPYGSYVMYSYMLAQRRK 144
+ +LL + P GSY++ S+M R K
Sbjct: 997 YLMLL-IVP-GSYLVMSHMAKLRSK 1065
>emb|FM992694.1| Candida dubliniensis CD36 chromosome 7, complete sequence
Length = 1022435
Score = 78.2 bits (191), Expect = 8e-13, Method: Composition-based stats.
Identities = 50/147 (34%), Positives = 84/147 (57%), Gaps = 1/147 (0%)
Frame = +1
Query: 1 RSPVGTTLLQVLSRLIVLYGAVR-LGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLN 59
+SP+ TT+ QV SRL++++G + L D+ A ++ + ++W ++E+IRYS+Y +NL
Sbjct: 701077 KSPLFTTVTQVFSRLLIVWGIHQYLPDSPANYHWCYITLCLSWSITEIIRYSYYASNLTG 701256
Query: 60 TTAPPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSV 119
LTWLRY+ F VLYP G+ E+ + +L + F + W +
Sbjct: 701257 QVPFWLTWLRYTTFYVLYPTGVFSEVCLVILSL--------------DDAGFYYGW---I 701385
Query: 120 WFILLGVYPYGSYVMYSYMLAQRRKMF 146
I+L VY G Y++Y+YM+ QR+K+
Sbjct: 701386 LKIILVVYIPGFYMLYTYMIKQRKKVL 701466
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 47/148 (31%), Positives = 80/148 (54%), Gaps = 3/148 (2%)
Frame = +1
Query: 2 SPVGTTLLQVLSRLIVLYG-AVRLGDTEATRSLA-FVQMVVAWCLSEVIRYSFYGANLLN 59
+P+ T LLQ +RLI++ G V + ++ A + F + +AW ++E+IRY FY +
Sbjct: 700312 TPIPTLLLQSFARLIIMVGICVVIPESLANYDITVFSGLTLAWSITEIIRYGFYVIKICG 700491
Query: 60 TTAPP-LTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNS 118
P L WLRYSAF+VLYP+G+ E ++ + Y+K P ++Y
Sbjct: 700492 IKTPYWLVWLRYSAFLVLYPLGLVCESTTVFNSYDYVKSRLP-------------AYYYF 700632
Query: 119 VWFILLGVYPYGSYVMYSYMLAQRRKMF 146
+ + ++ +Y G +Y+YM+ QR K+
Sbjct: 700633 LKYAIV-LYIPGFLYLYTYMIGQRTKVL 700713
>ref|XM_953920.1| Neurospora crassa OR74A hypothetical protein partial mRNA
Length = 645
Score = 78.2 bits (191), Expect = 9e-13, Method: Composition-based stats.
Identities = 54/143 (37%), Positives = 83/143 (58%)
Frame = +1
Query: 2 SPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNTT 61
+P+ TT++QV SRL++++G + S + M+ AW +EVIRYS++ ++
Sbjct: 208 APIFTTVMQVASRLMLVWG-ISYPFPHLNSSAWYTSMLTAWSTTEVIRYSYFALKQVDFI 384
Query: 62 APPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSVWF 121
L WLRYSAF+VLYP+GI+ E+ ++KAL V ++L +WY
Sbjct: 385 PYWLHWLRYSAFLVLYPMGISSEVAMIFKAL----------VGPADQLA---TWYPYALV 525
Query: 122 ILLGVYPYGSYVMYSYMLAQRRK 144
+L Y GS V+YS+ML+QRRK
Sbjct: 526 AVLLSYIPGSVVLYSHMLSQRRK 594
>emb|BX050674.1|CNS09B9I Single read from an extremity of a full-length cDNA clone made from
Anopheles gambiae total adult females. 3-PRIME end of
clone FK0AAC27BB10 of strain 6-9 of Anopheles gambiae
(African malaria mosquito)
Length = 757
Score = 56.6 bits (135), Expect(2) = 9e-13, Method: Composition-based stats.
Identities = 32/83 (38%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Frame = -2
Query: 2 SPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNTT 61
S V T LQV R +++ GA+ G +S + W L+E+IRYS++ A+LL
Sbjct: 672 SNVAMTFLQVFGRCMIVAGAIE-GTPTGQKSPGLPLALFCWSLTEIIRYSYFVAHLLLPA 496
Query: 62 APP-LTWLRYSAFMVLYPVGITG 83
P L WLRY+ F+ +YP G G
Sbjct: 495 VPSLLVWLRYTIFIPMYPCGFLG 427
Score = 42.0 bits (97), Expect(2) = 9e-13, Method: Composition-based stats.
Identities = 29/69 (42%), Positives = 41/69 (59%)
Frame = -3
Query: 78 PVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSVWFILLGVYPYGSYVMYSY 137
PV E+ C Y A YI+ W+VE+PN+ NF+FS+Y +W + + P MY +
Sbjct: 443 PVAFWEELLCSYWAQSYIRDTGKWSVELPNRFNFSFSFYYFIWIMAVCYMPLFPQ-MYLH 267
Query: 138 MLAQRRKMF 146
M AQRRK+F
Sbjct: 266 MFAQRRKVF 240
>ref|XM_001600000.1| PREDICTED: Nasonia vitripennis similar to GA21658-PA (LOC100115280),
mRNA
Length = 1509
Score = 77.8 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 46/136 (33%), Positives = 74/136 (54%)
Frame = +1
Query: 7 TLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNTTAPPLT 66
T LQV R +L+ + T+ + F +V W + EVIRY +Y NLLN LT
Sbjct: 1054 TTLQVGGRAFILFFMIEAEPRMQTKPVVFYIFLV-WSVVEVIRYPYYMTNLLNVKISALT 1230
Query: 67 WLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSVWFILLGV 126
WLRY+ +M LYP+G E + + +PY ++ + +T+++PN NF F + + LL +
Sbjct: 1231 WLRYTIWMPLYPLGFVFEGIIVLRNIPYFEETEKFTIDLPNSWNFAFYFPTFLRIYLLML 1410
Query: 127 YPYGSYVMYSYMLAQR 142
G + M ++M + R
Sbjct: 1411 CFPGMFAMMTHMNSAR 1458
>ref|XM_002065072.1| Drosophila willistoni GK15278 (Dwil\GK15278), mRNA
Length = 1203
Score = 77.8 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 49/137 (35%), Positives = 76/137 (55%)
Frame = +1
Query: 8 LLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNTTAPPLTW 67
QV R +L+ + T+ + F ++ W L E++RY +Y + LL LTW
Sbjct: 748 FFQVSGRNFILFLMIEAETRMYTKPVVFYVFII-WSLVELVRYPYYLSQLLGRELGLLTW 924
Query: 68 LRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSVWFILLGVY 127
LRY+ ++ LYP+GI E + +++PYI++ K +TVEMPNK N TF + LL +
Sbjct: 925 LRYTIWIPLYPMGIVCEGIIVLRSIPYIEETKRFTVEMPNKWNITFDMVLFLKVYLLLLT 1104
Query: 128 PYGSYVMYSYMLAQRRK 144
GSY++ S+M R K
Sbjct: 1105LPGSYLVMSHMSKLRAK 1155
>ref|XM_002088567.1| Drosophila yakuba GE11580 (Dyak\GE11580), mRNA
Length = 1116
Score = 77.4 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 48/137 (35%), Positives = 74/137 (54%)
Frame = +1
Query: 8 LLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNTTAPPLTW 67
QV R +L+ + + + + F V+ W L E++RY +Y A LL LTW
Sbjct: 658 FFQVSGRNFILFLMIDMEPRMYAKPVVFYVFVI-WSLVELVRYPYYLAQLLGREVGLLTW 834
Query: 68 LRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSVWFILLGVY 127
LRY+ ++ LYP+GI E + + +PYI++ K +TVEMPN N TF + L+ +
Sbjct: 835 LRYTVWIPLYPMGILCEGIIVLRNIPYIEETKRFTVEMPNSWNITFDMVLFLKIYLMLLI 1014
Query: 128 PYGSYVMYSYMLAQRRK 144
GSY++ S+M R K
Sbjct: 1015LPGSYLVMSHMAKLRSK 1065
>ref|XM_002079308.1| Drosophila simulans GD22057 (Dsim\GD22057), mRNA
Length = 1116
Score = 77.4 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 50/143 (34%), Positives = 77/143 (53%)
Frame = +1
Query: 2 SPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNTT 61
SPV QV R +L+ + + + + F ++ W L E++RY +Y A LL
Sbjct: 643 SPV-VPFFQVSGRNFILFLMIDMEPRMYAKPVVFYVFII-WSLVELVRYPYYLAQLLGRE 816
Query: 62 APPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSVWF 121
LTWLRY+ ++ LYP+GI E + + +PYI++ K +TVEMPN N TF +
Sbjct: 817 VGLLTWLRYTIWIPLYPMGILCEGIIVLRNIPYIEETKRFTVEMPNSWNITFDMVLFLKI 996
Query: 122 ILLGVYPYGSYVMYSYMLAQRRK 144
L+ + GSY++ S+M R K
Sbjct: 997 YLMLLIVPGSYLVMSHMAKLRSK 1065
>gb|AY071533.1| Drosophila melanogaster RE57556 full length cDNA
Length = 1350
Score = 77.0 bits (188), Expect = 2e-12, Method: Composition-based stats.
Identities = 50/143 (34%), Positives = 77/143 (53%)
Frame = +3
Query: 2 SPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNTT 61
SPV QV R +L+ + + + + F ++ W L E++RY +Y A LL
Sbjct: 732 SPV-VPFFQVSGRNFILFLMIDMEPRMYAKPVVFCVFII-WSLVELVRYPYYLAQLLGRE 905
Query: 62 APPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSVWF 121
LTWLRY+ ++ LYP+GI E + + +PYI++ K +TVEMPN N TF +
Sbjct: 906 VGLLTWLRYTIWIPLYPMGILCEGIIVLRNIPYIEETKRFTVEMPNPWNITFDMVLFLKI 1085
Query: 122 ILLGVYPYGSYVMYSYMLAQRRK 144
L+ + GSY++ S+M R K
Sbjct: 1086YLMLLIIPGSYLVMSHMAKLRSK 1154
>ref|XM_002057393.1| Drosophila virilis GJ18122 (Dvir\GJ18122), mRNA
Length = 1137
Score = 77.0 bits (188), Expect = 2e-12, Method: Composition-based stats.
Identities = 48/137 (35%), Positives = 75/137 (54%)
Frame = +1
Query: 8 LLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNTTAPPLTW 67
Q+ R VL+ + + + + F ++ W L E++RY +Y + LL LTW
Sbjct: 691 FFQISGRNFVLFLMIEMEPRMHAKPVVFYVFII-WSLVELVRYPYYVSQLLKRENGLLTW 867
Query: 68 LRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSVWFILLGVY 127
LRY+ ++ LYP+GI E L +++PYI++ K + V+MPNK N TF V LL +
Sbjct: 868 LRYTIWIPLYPMGIVCEGVILLRSIPYIEETKRFCVDMPNKWNSTFDMVLFVKVYLLLLA 1047
Query: 128 PYGSYVMYSYMLAQRRK 144
GSY++ S+M R K
Sbjct: 1048LPGSYLVMSHMSKLRVK 1098
>emb|CU633900.1| Podospora anserina genomic DNA chromosome 7, supercontig 1
Length = 3439086
Score = 77.0 bits (188), Expect = 2e-12, Method: Composition-based stats.
Identities = 55/145 (37%), Positives = 79/145 (54%), Gaps = 2/145 (1%)
Frame = +2
Query: 2 SPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNTT 61
+PV TTL+QV SRL ++Y A+ L + S + M+ AW +EVIRY+++ +
Sbjct: 1961144 APVFTTLMQVASRLFLMY-AITLPFPQLNASYWYSSMLCAWATTEVIRYTYFVFKQFDRI 1961320
Query: 62 APPLTWLRYSAFMVLYPVGITGEIGCLYKAL--PYIKKHKPWTVEMPNKLNFTFSWYNSV 119
L WLRYSAF++LYP+GI+ E+ +AL P + W+ SWY
Sbjct: 1961321 PASLHWLRYSAFLILYPIGISSEVAMTLRALWGPASSEAFAWS-----------SWYPYA 1961467
Query: 120 WFILLGVYPYGSYVMYSYMLAQRRK 144
+L Y GS V+Y +ML QRRK
Sbjct: 1961468 LGAVLLSYIPGSVVLYGHMLKQRRK 1961542
>gb|AY389664.1| Hyacinthus orientalis protein tyrosine phosphatase mRNA, partial
cds
Length = 805
Score = 77.0 bits (188), Expect = 2e-12, Method: Composition-based stats.
Identities = 50/136 (36%), Positives = 71/136 (52%), Gaps = 1/136 (0%)
Frame = +2
Query: 1 RSPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNT 60
RSPV TL Q+ SRL V +G + E +V++W ++E IRYSF+G
Sbjct: 215 RSPVSATLPQISSRLYVTWG-ILWSFPEVRTHFLVSSLVISWSITETIRYSFFGMKEALG 391
Query: 61 TAPP-LTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSV 119
AP WLRYS F++LYP GIT E + K+ + + MPNK +F+F +YN+
Sbjct: 392 FAPSWFLWLRYSTFLILYPSGITSEGWSDLSSFALHKETRKNCITMPNKWHFSFYYYNAA 571
Query: 120 WFILLGVYPYGSYVMY 135
LL P ++ Y
Sbjct: 572 IIALLIYVPGSPHMSY 619
>gb|BT044571.1| Drosophila melanogaster FI03286 full insert cDNA
Length = 1350
Score = 76.6 bits (187), Expect = 2e-12, Method: Composition-based stats.
Identities = 50/143 (34%), Positives = 77/143 (53%)
Frame = +3
Query: 2 SPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNTT 61
SPV QV R +L+ + + + + F ++ W L E++RY +Y A LL
Sbjct: 732 SPV-VPFFQVSGRNFILFLMIDMEPRMYAKPVVFYVFII-WSLVELVRYPYYLAQLLGRE 905
Query: 62 APPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSVWF 121
LTWLRY+ ++ LYP+GI E + + +PYI++ K +TVEMPN N TF +
Sbjct: 906 VGLLTWLRYTIWIPLYPMGILCEGIIVLRNIPYIEETKRFTVEMPNPWNITFDMVLFLKI 1085
Query: 122 ILLGVYPYGSYVMYSYMLAQRRK 144
L+ + GSY++ S+M R K
Sbjct: 1086YLMLLIIPGSYLVMSHMAKLRSK 1154
>ref|NM_135811.2| Drosophila melanogaster CG9267 (CG9267), mRNA
Length = 1339
Score = 76.6 bits (187), Expect = 2e-12, Method: Composition-based stats.
Identities = 50/143 (34%), Positives = 77/143 (53%)
Frame = +3
Query: 2 SPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNTT 61
SPV QV R +L+ + + + + F ++ W L E++RY +Y A LL
Sbjct: 732 SPV-VPFFQVSGRNFILFLMIDMEPRMYAKPVVFYVFII-WSLVELVRYPYYLAQLLGRE 905
Query: 62 APPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSVWF 121
LTWLRY+ ++ LYP+GI E + + +PYI++ K +TVEMPN N TF +
Sbjct: 906 VGLLTWLRYTIWIPLYPMGILCEGIIVLRNIPYIEETKRFTVEMPNPWNITFDMVLFLKI 1085
Query: 122 ILLGVYPYGSYVMYSYMLAQRRK 144
L+ + GSY++ S+M R K
Sbjct: 1086YLMLLIIPGSYLVMSHMAKLRSK 1154
>ref|XM_001969580.1| Drosophila erecta GG10197 (Dere\GG10197), mRNA
Length = 1116
Score = 76.3 bits (186), Expect = 3e-12, Method: Composition-based stats.
Identities = 49/138 (35%), Positives = 77/138 (55%), Gaps = 1/138 (0%)
Frame = +1
Query: 8 LLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNTTAPPLTW 67
QV R +L+ + + + + F ++ W L E++RY +Y A LL LTW
Sbjct: 658 FFQVSGRNFILFLMIDIEPRMYAKPVVFYVFII-WSLVELVRYPYYLAQLLGREVGLLTW 834
Query: 68 LRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSV-WFILLGV 126
LRY+ ++ LYP+GI E + + +PYI++ K +TVEMPN N TF + +I+L +
Sbjct: 835 LRYTIWIPLYPMGILCEGIIVLRNIPYIEETKRFTVEMPNSWNITFDMVLFLKIYIMLLI 1014
Query: 127 YPYGSYVMYSYMLAQRRK 144
P GSY++ S+M R K
Sbjct: 1015LP-GSYLVMSHMAKLRSK 1065
>gb|CP000497.1| Pichia stipitis CBS 6054 chromosome 3, complete sequence
Length = 1841851
Score = 76.3 bits (186), Expect = 3e-12, Method: Composition-based stats.
Identities = 47/147 (31%), Positives = 78/147 (53%), Gaps = 3/147 (2%)
Frame = +2
Query: 3 PVGTTLLQVLSRLIVLYGAVRL-GDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNTT 61
P+ TT QV SRL++++G +L ++ A ++ + ++W ++E+IRYS+Y NL +
Sbjct: 1787522 PIFTTATQVFSRLLIVWGVCQLLPESPANTHWIYITLSLSWSITEIIRYSYYATNLTSPG 1787701
Query: 62 APP--LTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSV 119
P LTWLRY+ F VLYP G++ E +Y + + + WY
Sbjct: 1787702 GVPDWLTWLRYTTFYVLYPTGVSSETYMIY-------------LSLNEASSIVGQWYYYF 1787842
Query: 120 WFILLGVYPYGSYVMYSYMLAQRRKMF 146
L Y G Y++Y+YM+ QR+K+
Sbjct: 1787843 LIFTLFTYIPGFYMLYTYMIKQRKKVL 1787923
Score = 70.9 bits (172), Expect = 1e-10, Method: Composition-based stats.
Identities = 52/149 (34%), Positives = 76/149 (51%), Gaps = 3/149 (2%)
Frame = +1
Query: 1 RSPVGTTLLQVLSRLIVLYG-AVRLGDTEATRSL-AFVQMVVAWCLSEVIRYSFYGANLL 58
+SP+ T LLQ L+R I+ G +L + A +L AF + VAW L+E+IRY FY L
Sbjct: 1786399 KSPLLTVLLQTLARSIITIGICYKLPEAPANWNLPAFTAITVAWSLAEIIRYGFYAVKLA 1786578
Query: 59 NTTAPP-LTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYN 117
P + WLRY+ F++LYPVG+ E+ + AL Y S Y
Sbjct: 1786579 CDEVPSWMFWLRYNMFILLYPVGLVAELTVVISALKYTMG----------------SSYF 1786710
Query: 118 SVWFILLGVYPYGSYVMYSYMLAQRRKMF 146
L +Y G + +Y +M +QRRK++
Sbjct: 1786711 FFLLFALSMYLPGFFTLYGHMFSQRRKVY 1786797
>ref|XM_001897878.1| Brugia malayi Protein tyrosine phosphatase-like protein, PTPLA
containing protein partial mRNA
Length = 618
Score = 76.3 bits (186), Expect = 3e-12, Method: Composition-based stats.
Identities = 56/148 (37%), Positives = 81/148 (54%), Gaps = 2/148 (1%)
Frame = +1
Query: 1 RSPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNT 60
RSPVGTT +QV SR+ +++ ++ +A+ + F ++ AW ++EVIRYS+YG L+N
Sbjct: 202 RSPVGTTTMQVFSRVSLVFILYKVVSAQASIGVLF--LLTAWSVTEVIRYSYYGLALINA 375
Query: 61 TAPPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLN--FTFSWYNS 118
+ TWLR ++ + ALP I K TVE+PN N F+F WY
Sbjct: 376 VSDIHTWLR--------------QLLVILAALPEIATKKHLTVELPNICNIGFSFWWYLI 513
Query: 119 VWFILLGVYPYGSYVMYSYMLAQRRKMF 146
+ IL Y G MY YML QR+K+
Sbjct: 514 AYIIL---YIPGFPQMYLYMLKQRKKVL 588
>ref|XM_001965009.1| Drosophila ananassae GF21639 (Dana\GF21639), mRNA
Length = 1116
Score = 76.3 bits (186), Expect = 3e-12, Method: Composition-based stats.
Identities = 48/137 (35%), Positives = 75/137 (54%)
Frame = +1
Query: 8 LLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNTTAPPLTW 67
QV R VL+ + + T+ + F ++ W L E++RY FY + LL LTW
Sbjct: 658 FFQVSGRNFVLFLMIEMEPRMYTKPVVFYVFII-WSLVELVRYPFYLSQLLGREVGLLTW 834
Query: 68 LRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSVWFILLGVY 127
LRY+ ++ LYP+GI E + + +PYI++ K + V+MPN+ N TF + LL +
Sbjct: 835 LRYTIWIPLYPMGILCEGIIVLRNIPYIEETKRFCVDMPNRWNITFDMVLFLKIYLLLLI 1014
Query: 128 PYGSYVMYSYMLAQRRK 144
GSY++ S+M R K
Sbjct: 1015LPGSYLVMSHMAKLRAK 1065
>ref|XM_001988275.1| Drosophila grimshawi GH11094 (Dgri\GH11094), mRNA
Length = 1164
Score = 75.9 bits (185), Expect = 4e-12, Method: Composition-based stats.
Identities = 46/137 (33%), Positives = 76/137 (55%)
Frame = +1
Query: 8 LLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNTTAPPLTW 67
Q+ R +L+ + + + + F ++ W L E++RY +Y + LL LTW
Sbjct: 718 FFQISGRNFILFLMIEMEPRMHAKPVVFYVFII-WSLVELVRYPYYVSQLLKRENGLLTW 894
Query: 68 LRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSVWFILLGVY 127
LRY+ ++ LYP+GI E L +++PY+++ K ++V+MPNK N TF V LL +
Sbjct: 895 LRYTIWIPLYPMGIICEGVILLRSIPYLEQTKRFSVDMPNKWNSTFDMVMFVKVYLLLLA 1074
Query: 128 PYGSYVMYSYMLAQRRK 144
GSY++ S+M R K
Sbjct: 1075LPGSYLVMSHMSKLRAK 1125
>ref|XM_359805.1| Magnaporthe grisea 70-15 hypothetical protein (MGG_04972) partial
mRNA
Length = 693
Score = 75.5 bits (184), Expect = 5e-12, Method: Composition-based stats.
Identities = 56/147 (38%), Positives = 81/147 (55%), Gaps = 1/147 (0%)
Frame = +1
Query: 1 RSPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNT 60
R+ + TT +QV SR ++++G V L + AT S + M+ AW +EVIRY+++ L
Sbjct: 262 RTSLITTAMQVGSRYLLVWGVVWLFPSVAT-SPGYSSMLSAWATTEVIRYTYFALLLAGV 438
Query: 61 TAPPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSVW 120
AP L WLRYS F+VLYPVGI E ++ A ++ T +V+
Sbjct: 439 DAPGLAWLRYSTFIVLYPVGILSECWMMWLA-------------ATSRAEVTHPLLPTVY 579
Query: 121 FILLG-VYPYGSYVMYSYMLAQRRKMF 146
+I+L VYP GS MYS+M QR K+
Sbjct: 580 YIILFVVYPPGSVHMYSHMWKQRSKVL 660
>gb|AF022985.2| Caenorhabditis elegans cosmid T15B7, complete sequence
Length = 36752
Score = 53.9 bits (128), Expect(2) = 6e-12, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 50/80 (62%), Gaps = 2/80 (2%)
Frame = +2
Query: 69 RYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSVWFILLGVYP 128
RY+ F VLYP+G++GE+ L+ +L + + K T+EMPN+LN S++ W +++
Sbjct: 29288 RYTLFYVLYPMGVSGELLTLFASLNEVDEKKILTLEMPNRLNMGISFW---WVLIIAALS 29458
Query: 129 Y--GSYVMYSYMLAQRRKMF 146
Y G +Y YM+ QR+K+
Sbjct: 29459 YIPGFPQLYFYMIGQRKKIL 29518
Score = 41.2 bits (95), Expect(2) = 6e-12, Method: Composition-based stats.
Identities = 32/87 (36%), Positives = 47/87 (54%), Gaps = 17/87 (19%)
Frame = +1
Query: 1 RSPVGTTLLQVLSRLIVLYGAVRLGDTE----------------ATRSLAFVQMVVAWCL 44
RSPVGTT +QV SR+++++ + L T A S+ ++VAW +
Sbjct: 28981 RSPVGTTAMQVTSRVVLVWPILHLCSTVSWNFLS*T*IN*TNF*ARFSIGVPLLLVAWSV 29160
Query: 45 SEVIRYSFYGANLLNTTAPP-LTWLRY 70
+EVIRYSFY ++L P L +LRY
Sbjct: 29161 TEVIRYSFYALSVLKQPIPYFLLYLRY 29241
>ref|XM_570797.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein
(CNE00730) partial mRNA
Length = 1076
Score = 75.1 bits (183), Expect = 7e-12, Method: Composition-based stats.
Identities = 57/174 (32%), Positives = 80/174 (45%), Gaps = 28/174 (16%)
Frame = +1
Query: 1 RSPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNT 60
RSPVGT QV SRL ++G V F M+ AW L+EVIRYSFY +LL+
Sbjct: 331 RSPVGTVASQVASRLWTVWGVVEAAPEITHGHPLFTTMLFAWSLTEVIRYSFYALSLLSI 510
Query: 61 TAPPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTV-----EMPNKLNFT--- 112
+AP L +LRY+ F+ LYP+G E + LP + V + P ++ +
Sbjct: 511 SAPALNYLRYTTFIPLYPLGAASEAFLSFATLPALAPVVSRAVTNVMAQAPREIMKSKVG 690
Query: 113 --------------------FSWYNSVWFILLGVYPYGSYVMYSYMLAQRRKMF 146
+ W V L ++ YV+Y+YML QRRK+
Sbjct: 691 REVLWWCAKHGGGTAGAQQDWGWIEIVRAGLFLLWWPALYVLYTYMLKQRRKVL 852
>ref|XM_770256.1| Cryptococcus neoformans var. neoformans B-3501A hypothetical
protein (CNBE0670) partial mRNA
Length = 894
Score = 75.1 bits (183), Expect = 7e-12, Method: Composition-based stats.
Identities = 57/174 (32%), Positives = 80/174 (45%), Gaps = 28/174 (16%)
Frame = +1
Query: 1 RSPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNT 60
RSPVGT QV SRL ++G V F M+ AW L+EVIRYSFY +LL+
Sbjct: 331 RSPVGTVASQVASRLWTVWGVVEAAPEITHGHPLFTTMLFAWSLTEVIRYSFYALSLLSI 510
Query: 61 TAPPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTV-----EMPNKLNFT--- 112
+AP L +LRY+ F+ LYP+G E + LP + V + P ++ +
Sbjct: 511 SAPALNYLRYTTFIPLYPLGAASEAFLSFATLPALAPVVSRAVTNVMAQAPREIMKSKVG 690
Query: 113 --------------------FSWYNSVWFILLGVYPYGSYVMYSYMLAQRRKMF 146
+ W V L ++ YV+Y+YML QRRK+
Sbjct: 691 REVLWWCAKHGGGTAGAQQDWGWIEIVRAGLFLLWWPALYVLYTYMLKQRRKVL 852
>ref|XM_455715.1| Kluyveromyces lactis NRRL Y-1140, KLLA0F14146g hypothetical protein
partial mRNA
Length = 645
Score = 75.1 bits (183), Expect = 8e-12, Method: Composition-based stats.
Identities = 51/148 (34%), Positives = 84/148 (56%), Gaps = 3/148 (2%)
Frame = +1
Query: 1 RSPVGTTLLQVLSRLIVLYGAVR-LGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLN 59
R+P+ TT QV SRL+V+ G + + + E + ++ ++ AWC++E++RY FY NL+
Sbjct: 208 RAPLVTTAAQVASRLLVVIGIFQYVPEAENAHKIYYITLLSAWCIAEIVRYMFYFFNLVA 387
Query: 60 TTAPPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSV 119
L LRY+ F VLYP+G+ E+ +Y ALP + K N +
Sbjct: 388 QAPTVLVVLRYNMFYVLYPLGVGSELFIIYSALPLAEA----------KYNILYK----- 522
Query: 120 WFILLGVYPY--GSYVMYSYMLAQRRKM 145
+F++ G+ Y G V++S+M+AQRRK+
Sbjct: 523 YFLIAGMLAYIPGFPVLFSHMVAQRRKV 606
>emb|CR352863.1| Gallus gallus finished cDNA, clone ChEST493n16
Length = 1043
Score = 75.1 bits (183), Expect = 8e-12, Method: Composition-based stats.
Identities = 40/110 (36%), Positives = 68/110 (61%)
Frame = +1
Query: 2 SPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNTT 61
S V T QV+SR+ + + AV E + + VVAW ++E+IRYSFY +LLN
Sbjct: 277 SSVVLTAFQVMSRVFLTW-AVTHSVKEVQTEDSVLLFVVAWTITEIIRYSFYTFSLLNHL 453
Query: 62 APPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNF 111
+ W RY+ F++LYP+G++GE+ +Y ALP++++ +++ +P +F
Sbjct: 454 PYLIKWARYTLFIILYPMGVSGELLTIYAALPFVRQSGLYSISLPKWFSF 603
>ref|XM_002214989.1| Branchiostoma floridae hypothetical protein (BRAFLDRAFT_77431)
mRNA, complete cds
Length = 729
Score = 74.7 bits (182), Expect = 8e-12, Method: Composition-based stats.
Identities = 50/143 (34%), Positives = 76/143 (53%)
Frame = +1
Query: 2 SPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNTT 61
S V T LQ+ +R+ +++G L T +L +VV WCL EV RY +Y N+L
Sbjct: 271 SGVVPTALQMFARVFIVWGVAHLVPKVQT-TLYISLVVVLWCLCEVTRYPYYVTNVLGVK 447
Query: 62 APPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSVWF 121
+ L W RY+ F+VLYP+G GE+ +Y AL IK+ +P+ L F +Y V
Sbjct: 448 SDVLLWCRYTFFIVLYPLGAFGEVLTMYAALGPIKEGDLHLAGIPSNLQGAFQFYYYVIV 627
Query: 122 ILLGVYPYGSYVMYSYMLAQRRK 144
+ L + + +Y +M QR+K
Sbjct: 628 VFLLGWGPCWWPIYKHMFRQRKK 696
>ref|XM_387480.1| Gibberella zeae PH-1 hypothetical protein partial mRNA
Length = 672
Score = 74.7 bits (182), Expect = 9e-12, Method: Composition-based stats.
Identities = 55/146 (37%), Positives = 78/146 (53%), Gaps = 1/146 (0%)
Frame = +1
Query: 1 RSPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNT 60
R+P+ TTL+QV SR ++++ V + A S + M++AW ++E+IRYSF+ L
Sbjct: 244 RAPLFTTLMQVSSRFLLVWAVVDVFPFLAL-SPFYSSMLIAWSVTEIIRYSFFALTLSGF 420
Query: 61 TAPPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMP-NKLNFTFSWYNSV 119
LTWLRY+ F VLYPVGI E + W P LN Y
Sbjct: 421 QPKFLTWLRYNTFFVLYPVGIFSECWLI------------WLATAPAGHLN---ELYKFA 555
Query: 120 WFILLGVYPYGSYVMYSYMLAQRRKM 145
+L +Y GSYV+YS+M+ QRRK+
Sbjct: 556 LQAILAIYVPGSYVLYSHMMTQRRKV 633
>emb|CR382126.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome F complete sequence
Length = 2602197
Score = 74.7 bits (182), Expect = 9e-12, Method: Composition-based stats.
Identities = 51/148 (34%), Positives = 84/148 (56%), Gaps = 3/148 (2%)
Frame = +2
Query: 1 RSPVGTTLLQVLSRLIVLYGAVR-LGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLN 59
R+P+ TT QV SRL+V+ G + + + E + ++ ++ AWC++E++RY FY NL+
Sbjct: 1309565 RAPLVTTAAQVASRLLVVIGIFQYVPEAENAHKIYYITLLSAWCIAEIVRYMFYFFNLVA 1309744
Query: 60 TTAPPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSV 119
L LRY+ F VLYP+G+ E+ +Y ALP + K N +
Sbjct: 1309745 QAPTVLVVLRYNMFYVLYPLGVGSELFIIYSALPLAEA----------KYNILYK----- 1309879
Query: 120 WFILLGVYPY--GSYVMYSYMLAQRRKM 145
+F++ G+ Y G V++S+M+AQRRK+
Sbjct: 1309880 YFLIAGMLAYIPGFPVLFSHMVAQRRKV 1309963
>emb|AJ719527.1| Gallus gallus mRNA for hypothetical protein, clone 3b6
Length = 3061
Score = 74.7 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 45/145 (31%), Positives = 80/145 (55%), Gaps = 1/145 (0%)
Frame = +1
Query: 1 RSPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVA-WCLSEVIRYSFYGANLLN 59
RSP+ ++QV R +L+ V LG E +S A V + W + E+ RY +Y + +
Sbjct: 682 RSPLIPAVIQVFGRNFILF--VVLGSLEEMQSKAVVFFLFYFWSIIELFRYPYYMLSCMG 855
Query: 60 TTAPPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSV 119
PLTWLRY++++ LYP+G E CL +++P + +++ +PN LN T + +
Sbjct: 856 IEWKPLTWLRYTSWIPLYPLGGLAEAVCLIQSIPIFSETGKFSLGLPNPLNVTIQFSFLL 1035
Query: 120 WFILLGVYPYGSYVMYSYMLAQRRK 144
L+ ++ G +V + Y+ QR++
Sbjct: 1036QMYLIALF-LGLFVNFRYLYKQRKQ 1107
>ref|XR_032036.1| PREDICTED: Mus musculus similar to protein tyrosine
phosphatase-like protein PTPLB (LOC666053), misc RNA
Length = 992
Score = 74.3 bits (181), Expect = 1e-11, Method: Composition-based stats.
Identities = 41/107 (38%), Positives = 67/107 (62%)
Frame = +1
Query: 2 SPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNTT 61
S V T QV+SR+ +++ AV E + + V+AW ++E+IRYSFY +LLN
Sbjct: 346 SSVVLTSFQVMSRVFLIW-AVTHSVKEVQSEDSVLLFVIAWTITEIIRYSFYTFSLLNHL 522
Query: 62 APPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNK 108
+ W RY+ F+VLYP+G+T E+ +Y ALP++ + +++ +PNK
Sbjct: 523 PYIIKWARYTLFIVLYPMGVTRELLTIYAALPFVWQAGLYSISLPNK 663
>ref|XR_032745.1| PREDICTED: Mus musculus similar to protein tyrosine
phosphatase-like protein PTPLB (LOC666053), misc RNA
Length = 992
Score = 74.3 bits (181), Expect = 1e-11, Method: Composition-based stats.
Identities = 41/107 (38%), Positives = 67/107 (62%)
Frame = +1
Query: 2 SPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNTT 61
S V T QV+SR+ +++ AV E + + V+AW ++E+IRYSFY +LLN
Sbjct: 346 SSVVLTSFQVMSRVFLIW-AVTHSVKEVQSEDSVLLFVIAWTITEIIRYSFYTFSLLNHL 522
Query: 62 APPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNK 108
+ W RY+ F+VLYP+G+T E+ +Y ALP++ + +++ +PNK
Sbjct: 523 PYIIKWARYTLFIVLYPMGVTRELLTIYAALPFVWQAGLYSISLPNK 663
>gb|AC132863.8| Mus musculus chromosome 15, clone RP24-388K7, complete sequence
Length = 210979
Score = 74.3 bits (181), Expect = 1e-11, Method: Composition-based stats.
Identities = 41/107 (38%), Positives = 67/107 (62%)
Frame = -3
Query: 2 SPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNTT 61
S V T QV+SR+ +++ AV E + + V+AW ++E+IRYSFY +LLN
Sbjct: 100730 SSVVLTSFQVMSRVFLIW-AVTHSVKEVQSEDSVLLFVIAWTITEIIRYSFYTFSLLNHL 100554
Query: 62 APPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNK 108
+ W RY+ F+VLYP+G+T E+ +Y ALP++ + +++ +PNK
Sbjct: 100553 PYIIKWARYTLFIVLYPMGVTRELLTIYAALPFVWQAGLYSISLPNK 100413
>ref|XM_001383591.1| Pichia stipitis CBS 6054 hypothetical protein partial mRNA
Length = 648
Score = 74.3 bits (181), Expect = 1e-11, Method: Composition-based stats.
Identities = 47/147 (31%), Positives = 78/147 (53%), Gaps = 3/147 (2%)
Frame = +1
Query: 3 PVGTTLLQVLSRLIVLYGAVRL-GDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNTT 61
P+ TT QV SRL++++G +L ++ A ++ + ++W ++E+IRYS+Y NL +
Sbjct: 214 PIFTTATQVFSRLLIVWGVCQLLPESPANTHWIYITLSLSWSITEIIRYSYYATNLTSPG 393
Query: 62 APP--LTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSV 119
P LTWLRY+ F VLYP G++ E +Y + + + WY
Sbjct: 394 GVPDWLTWLRYTTFYVLYPTGVSSETYMIY-------------LSLNEASSIVGQWYYYF 534
Query: 120 WFILLGVYPYGSYVMYSYMLAQRRKMF 146
L Y G Y++Y+YM+ QR+K+
Sbjct: 535 LIFTLFTYIPGFYMLYTYMIKQRKKVL 615
>ref|XM_002141580.1| Cryptosporidium muris RN66 hypothetical protein, conserved, mRNA
Length = 738
Score = 74.3 bits (181), Expect = 1e-11, Method: Composition-based stats.
Identities = 57/162 (35%), Positives = 84/162 (51%), Gaps = 19/162 (11%)
Frame = +1
Query: 2 SPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQ--MVVAWCLSEVIRYSFYGANLLN 59
SP+ T +QVLSRL +++ L + + +V+AW LSE+IRY +Y L+
Sbjct: 205 SPIFPTSVQVLSRLHIVWIIFFLSPENSPQITTIFSSILVIAWSLSELIRYPYYIVLKLS 384
Query: 60 TTAPP------LTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKP-----------WT 102
P L WLRY+AF++LYP+GI E+ + I+ H +
Sbjct: 385 NIYPNIKMPVFLKWLRYTAFIILYPIGILSEVVICSNFIYDIRSHSSIKDSIYLKLIHFP 564
Query: 103 VEMPNKLNFTFSWYNSVWFILLGVYPYGSYVMYSYMLAQRRK 144
EMPNK NF + + ++ +L +Y GS MYSYML QR+K
Sbjct: 565 QEMPNKFNFEVNLAH-IYISILCLYIPGSIYMYSYMLYQRKK 687
>ref|NM_125369.2| Arabidopsis thaliana unknown protein (AT5G59770) mRNA, complete cds
Length = 969
Score = 73.9 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 42/104 (40%), Positives = 62/104 (59%)
Frame = +1
Query: 39 VVAWCLSEVIRYSFYGANLLNTTAPPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKH 98
+VAWC+ E+IRY Y L LT+LRY+ F+V+YP G+ GE+ +YKALPY+K+
Sbjct: 487 LVAWCIGEMIRYPHYAFTCLGRCPYWLTYLRYTGFIVIYPTGLVGELLIMYKALPYVKER 666
Query: 99 KPWTVEMPNKLNFTFSWYNSVWFILLGVYPYGSYVMYSYMLAQR 142
+ F FS+Y+ +W +LL VYP+ +Y + QR
Sbjct: 667 NLYANFFS---VFPFSYYDFLWAVLL-VYPFLWLKLYLQLFKQR 786
>ref|XM_002298340.1| Populus trichocarpa predicted protein, mRNA
Length = 934
Score = 73.9 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 44/105 (41%), Positives = 67/105 (63%), Gaps = 1/105 (0%)
Frame = +3
Query: 40 VAWCLSEVIRYSFYGANLLNTTAPPLTWLRYSAFMVLYPVGIT-GEIGCLYKALPYIKKH 98
VAW ++EVIRYS Y N + + +T+LRY+AF+VLYP+G+ GE+ +Y+ALP++KK
Sbjct: 375 VAWSMAEVIRYSHYALNCVGSCPSWITYLRYTAFIVLYPIGLAPGEMWTMYQALPFVKKK 554
Query: 99 KPWTVEMPNKLNFTFSWYNSVWFILLGVYPYGSYVMYSYMLAQRR 143
+ F FS+Y+ + +LL YP+ +Y Y+L QRR
Sbjct: 555 NLYADFFA---AFPFSYYDFLRVVLL-CYPFLWLNLYRYLLKQRR 677
>ref|XM_002249774.1| Branchiostoma floridae hypothetical protein (BRAFLDRAFT_111868)
mRNA, complete cds
Length = 729
Score = 73.6 bits (179), Expect = 2e-11, Method: Composition-based stats.
Identities = 49/143 (34%), Positives = 75/143 (52%)
Frame = +1
Query: 2 SPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNTT 61
S V T LQ+ +R+ +++G L T +L +V+ WCL EV RY +Y N+L
Sbjct: 271 SGVVPTALQMFARVFIVWGVAHLVPKVQT-TLYISLVVLPWCLCEVTRYPYYVTNVLGVK 447
Query: 62 APPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSVWF 121
+ L W RY+ F+VLYP+G GE+ +Y AL IK+ +P+ L F +Y V
Sbjct: 448 SDVLLWCRYTFFIVLYPLGAFGEVLTMYAALGPIKEGDLHLAGIPSSLQGAFQFYYYVIV 627
Query: 122 ILLGVYPYGSYVMYSYMLAQRRK 144
+ L + + +Y +M QR K
Sbjct: 628 VFLLGWAPCWWPIYKHMFRQREK 696
>emb|CR380958.2| Candida glabrata strain CBS138 chromosome L complete sequence
Length = 1455689
Score = 73.6 bits (179), Expect = 2e-11, Method: Composition-based stats.
Identities = 49/148 (33%), Positives = 83/148 (56%), Gaps = 3/148 (2%)
Frame = -2
Query: 1 RSPVGTTLLQVLSRLIVLYGAVR-LGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLN 59
RSP+ TT QVLSRL+V+ G + L + + ++ ++++W ++E+IRY FY L+
Sbjct: 409144 RSPLLTTAAQVLSRLVVVLGIFQYLPEARNAHGIVYITLLLSWSITEIIRYMFYFFTLIG 408965
Query: 60 TTAPP--LTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYN 117
+ P L +LRY+ F+VLYP G+ E+ +Y ALP + ++ W
Sbjct: 408964 SRGAPTFLVYLRYNLFLVLYPTGVASELLIIYSALPVAEA------------KYSLLWKR 408821
Query: 118 SVWFILLGVYPYGSYVMYSYMLAQRRKM 145
+ ++L P G +++ +MLAQRRK+
Sbjct: 408820 FLIGVMLTYLP-GLPMLFLHMLAQRRKI 408740
>ref|XM_448928.1| Candida glabrata CBS138, CAGL0L03564g partial mRNA
Length = 651
Score = 73.6 bits (179), Expect = 2e-11, Method: Composition-based stats.
Identities = 49/148 (33%), Positives = 83/148 (56%), Gaps = 3/148 (2%)
Frame = +1
Query: 1 RSPVGTTLLQVLSRLIVLYGAVR-LGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLN 59
RSP+ TT QVLSRL+V+ G + L + + ++ ++++W ++E+IRY FY L+
Sbjct: 208 RSPLLTTAAQVLSRLVVVLGIFQYLPEARNAHGIVYITLLLSWSITEIIRYMFYFFTLIG 387
Query: 60 TTAPP--LTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYN 117
+ P L +LRY+ F+VLYP G+ E+ +Y ALP + ++ W
Sbjct: 388 SRGAPTFLVYLRYNLFLVLYPTGVASELLIIYSALPVAEA------------KYSLLWKR 531
Query: 118 SVWFILLGVYPYGSYVMYSYMLAQRRKM 145
+ ++L P G +++ +MLAQRRK+
Sbjct: 532 FLIGVMLTYLP-GLPMLFLHMLAQRRKI 612
>ref|XM_001401992.1| Aspergillus niger CBS 513.88 hypothetical protein (An04g06650)
partial mRNA
Length = 633
Score = 72.8 bits (177), Expect = 3e-11, Method: Composition-based stats.
Identities = 56/154 (36%), Positives = 84/154 (54%), Gaps = 10/154 (6%)
Frame = +1
Query: 1 RSPVGTTLLQVLSRLIVLYG------AVRLGDTEATR--SLAFVQMVVAWCLSEVIRYSF 52
R+PV TT +QV SR+++++G V +G +E AF+ + AW ++E IRY F
Sbjct: 196 RAPVLTTAMQVASRILLVWGIMYPFQGVLVGGSEEAGLGDYAFLGCLSAWGVTECIRYGF 375
Query: 53 YGANLLNTTAPPL-TWLRYSAFMVLYPVGITGEIGCLYKAL-PYIKKHKPWTVEMPNKLN 110
+ L P WLRY+ F VLYP+GIT E ++KAL P + P
Sbjct: 376 FALQLSGVGVPGWWAWLRYNTFYVLYPLGITSECVMVFKALGPAGELVSP---------- 525
Query: 111 FTFSWYNSVWFILLGVYPYGSYVMYSYMLAQRRK 144
+ W+ +LG+Y GSY++Y++M+AQRRK
Sbjct: 526 -LYKWF---LVAVLGIYVPGSYILYTHMIAQRRK 615
>ref|XM_001523755.1| Lodderomyces elongisporus NRRL YB-4239 hypothetical protein
(LELG_05221) partial mRNA
Length = 627
Score = 72.8 bits (177), Expect = 3e-11, Method: Composition-based stats.
Identities = 49/147 (33%), Positives = 81/147 (55%), Gaps = 1/147 (0%)
Frame = +1
Query: 1 RSPVGTTLLQVLSRLIVLYGAVR-LGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLN 59
+SP+ TT+ QV SRL++++G + L + A ++ + ++W ++E+IRYS+Y NL
Sbjct: 211 KSPLFTTVTQVFSRLLLVWGIHQYLPFSPANYHWCYITLCLSWSITEIIRYSYYAQNLRG 390
Query: 60 TTAPPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSV 119
LTWLRY+ F VLYP G+ E+ + +LP F + W+ V
Sbjct: 391 LVPHWLTWLRYTTFYVLYPTGVFSEVYQIILSLP--------------TAGFYYGWFLRV 528
Query: 120 WFILLGVYPYGSYVMYSYMLAQRRKMF 146
+L Y G Y++Y+YM+ QR+K+
Sbjct: 529 ---ILVTYIPGFYMLYTYMIKQRKKVL 600
>emb|CU329671.1| Schizosaccharomyces pombe chromosome II
Length = 4539804
Score = 64.7 bits (156), Expect(2) = 5e-11, Method: Composition-based stats.
Identities = 44/125 (35%), Positives = 68/125 (54%)
Frame = -2
Query: 6 TTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNTTAPPL 65
TT++QV SRL +++G S ++ M++AW ++E+IRY+FY NL L
Sbjct: 1703495 TTIIQVASRLYLVWGVCYPFSYVIEGSPIYLSMIIAWSITEIIRYAFYAFNLNGDIPAFL 1703316
Query: 66 TWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSVWFILLG 125
TWLRY+ F++LYP+G E + K+ I W++ NKL +W IL+
Sbjct: 1703315 TWLRYNTFLILYPIGAGSEFLLVLKS--RIAAQYVWSL---NKL---------LWPILMS 1703178
Query: 126 VYPYG 130
+YP G
Sbjct: 1703177 IYPPG 1703163
Score = 27.3 bits (59), Expect(2) = 5e-11, Method: Composition-based stats.
Identities = 11/16 (68%), Positives = 15/16 (93%)
Frame = -3
Query: 130 GSYVMYSYMLAQRRKM 145
G Y+MY++MLAQRRK+
Sbjct: 1703113 GLYIMYTHMLAQRRKI 1703066
>ref|XM_001730412.1| Malassezia globosa CBS 7966 hypothetical protein MGL_2260 partial
mRNA
Length = 630
Score = 72.0 bits (175), Expect = 5e-11, Method: Composition-based stats.
Identities = 51/141 (36%), Positives = 81/141 (57%), Gaps = 1/141 (0%)
Frame = +1
Query: 7 TLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNTTAPPLT 66
T +QVLSRLIV++ V A S + +++AW LSEV RY FY LLN+ +
Sbjct: 145 TAIQVLSRLIVVW-LVSEKYESAAHSPYYATLILAWSLSEVGRYPFYVNQLLNSPSFMAL 321
Query: 67 WLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWT-VEMPNKLNFTFSWYNSVWFILLG 125
W RYS F++LYP+G+ E+ ++ +LP+ + PW V+M +S + + ++
Sbjct: 322 WARYSFFVILYPLGVFSELQLIFASLPH---NAPWPWVDMS-----AWSLRDLFFLAVIP 477
Query: 126 VYPYGSYVMYSYMLAQRRKMF 146
+Y G ++YS +LA RRK+
Sbjct: 478 LYGPGLIMLYSRLLASRRKVL 540
>ref|XM_001553915.1| Botryotinia fuckeliana B05.10 hypothetical protein (BC1G_07525)
partial mRNA
Length = 687
Score = 72.0 bits (175), Expect = 5e-11, Method: Composition-based stats.
Identities = 49/146 (33%), Positives = 80/146 (54%)
Frame = +1
Query: 1 RSPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNT 60
R+P+ TT +QV SRL++++ V A +S + M++AW ++EVIRYS++ L
Sbjct: 259 RAPISTTGMQVASRLLLVWFIVNPFPWVA-KSTGYSTMLIAWSVTEVIRYSYFVITLSGY 435
Query: 61 TAPPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSVW 120
+TW RY+ F VLYP+GI+ E +YKA+ + S Y V
Sbjct: 436 KPAIVTWFRYNTFFVLYPLGISSECWLIYKAIEPAGE-------------IYGSLYPLVL 576
Query: 121 FILLGVYPYGSYVMYSYMLAQRRKMF 146
+L +Y GSY+++++M+ QR K+
Sbjct: 577 KAILLIYIPGSYILFTHMIKQRSKVL 654
>ref|XM_002170561.1| PREDICTED: Hydra magnipapillata similar to predicted protein
(LOC100205849), partial mRNA
Length = 1076
Score = 72.0 bits (175), Expect = 6e-11, Method: Composition-based stats.
Identities = 39/114 (34%), Positives = 64/114 (56%)
Frame = +2
Query: 1 RSPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNT 60
R+ + L+QV R L+ + + + + A V +++AW SEVIRY FY L
Sbjct: 695 RTGIIAPLIQVCGRNFCLFILI-VPEKSLRSNFALVPLILAWSASEVIRYPFYLTTLHQY 871
Query: 61 TAPPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFS 114
+ L WLRYSA+++LYP+G+ E+ +Y+++ + W +PN LN +FS
Sbjct: 872 KSYLLGWLRYSAWIILYPMGMISEVLFIYQSIELADIRERWWCSLPNALNVSFS 1033
>ref|XM_001239446.1| Coccidioides immitis RS hypothetical protein (CIMG_09068) partial
mRNA
Length = 729
Score = 72.0 bits (175), Expect = 7e-11, Method: Composition-based stats.
Identities = 57/166 (34%), Positives = 84/166 (50%), Gaps = 21/166 (12%)
Frame = +1
Query: 1 RSPVGTTLLQVLSRLIVLYGAVRLGDTE-----------------ATRSLAFVQMVVAWC 43
R+PV TTL+QV SR++V++G + + E FV + AW
Sbjct: 253 RAPVITTLMQVASRIVVVWGVMWMFAEERVGREMGILGGGRGGGGKLGDWGFVGCLGAWG 432
Query: 44 LSEVIRYSFYGANLLNTTAPP-LTWLRYSAFMVLYPVGITGEIGCLYKAL-PYIKKHK-- 99
++E +RY F+ + P L+WLRY+ F VLYP+GI+ E +Y AL P I H
Sbjct: 433 VTECVRYGFFMLQISGNGVPGWLSWLRYNTFFVLYPIGISSECVLMYLALEPAIMVHPLL 612
Query: 100 PWTVEMPNKLNFTFSWYNSVWFILLGVYPYGSYVMYSYMLAQRRKM 145
PW V+ +L VY GSY++Y++M+AQRRK+
Sbjct: 613 PW-----------------VFKAILLVYVPGSYILYTHMMAQRRKV 699
>ref|XM_001624460.1| Nematostella vectensis predicted protein (NEMVEDRAFT_v1g174728)
partial mRNA
Length = 1083
Score = 71.6 bits (174), Expect = 8e-11, Method: Composition-based stats.
Identities = 32/87 (36%), Positives = 55/87 (63%)
Frame = +1
Query: 38 MVVAWCLSEVIRYSFYGANLLNTTAPPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKK 97
+ W + E+IRY FY ++ PL WLRY+A++ LYPVG+ E+ ++KALP + +
Sbjct: 787 LFFTWSVIEIIRYPFYIVQIIGIPFEPLIWLRYTAWIPLYPVGMITEVILIWKALPLLDQ 966
Query: 98 HKPWTVEMPNKLNFTFSWYNSVWFILL 124
+ +++ +PN NF+FS+ + F L+
Sbjct: 967 TQRFSIILPNAFNFSFSFAMFLRFYLI 1047
>ref|XM_002003977.1| Drosophila mojavensis GI18216 (Dmoj\GI18216), mRNA
Length = 1137
Score = 71.6 bits (174), Expect = 8e-11, Method: Composition-based stats.
Identities = 43/137 (31%), Positives = 76/137 (55%)
Frame = +1
Query: 8 LLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNTTAPPLTW 67
Q+ R VL+ + + + + F V+ W L +++RY +Y + L+ LTW
Sbjct: 691 FFQISGRNFVLFLMIEMEPRMHAKPVVFYVFVI-WSLVKIVRYPYYVSQLVKRDNGLLTW 867
Query: 68 LRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSVWFILLGVY 127
LRY+ ++ LYP+G+ E L +++PYI++ K + V+MPNK N+TF + LL +
Sbjct: 868 LRYTIWIPLYPMGLVCEGVILLRSIPYIEETKRFCVDMPNKWNWTFDMVLFLKVYLLLLA 1047
Query: 128 PYGSYVMYSYMLAQRRK 144
G++++ S+M R K
Sbjct: 1048LPGTFMVMSHMSKLRAK 1098
>dbj|AK119124.1| Arabidopsis thaliana mRNA for unknown protein, complete cds, clone:
RAFL21-47-O11
Length = 868
Score = 71.6 bits (174), Expect = 8e-11, Method: Composition-based stats.
Identities = 42/104 (40%), Positives = 62/104 (59%)
Frame = +2
Query: 39 VVAWCLSEVIRYSFYGANLLNTTAPPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKH 98
+VAWC+ E+IRY Y L LT+LRY+ F+V+YP G+ GE+ +YKALPY+K+
Sbjct: 386 LVAWCIGEMIRYPHYAFTCLGRCPYWLTYLRYTGFIVIYPTGLVGELLIMYKALPYVKER 565
Query: 99 KPWTVEMPNKLNFTFSWYNSVWFILLGVYPYGSYVMYSYMLAQR 142
+ F FS+Y+ +W +LL VYP+ +Y + QR
Sbjct: 566 NLYANFFS---VFPFSYYDFLWAVLL-VYPFLWLKLYLQLFKQR 685
>emb|CR847515.10| Zebrafish DNA sequence from clone DKEYP-60A7 in linkage group 9 Contains
the gene for a novel protein similar to part of vertebrate
adenylate cyclase 5 (ADCY5), the ptplb gene for protein
tyrosine phosphatase-like (proline instead of catalytic
arginine), member b, the 5' end of the stam2 gene for
signal transducing adaptor molecule (SH3 domain and ITAM
motif) 2 and two CpG islands, complete sequence
Length = 153947
Score = 54.3 bits (129), Expect(2) = 9e-11, Method: Composition-based stats.
Identities = 24/60 (40%), Positives = 43/60 (71%)
Frame = -3
Query: 69 RYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSVWFILLGVYP 128
RY+ F+VLYP+G+ GE+ +Y ALPY++K +++ +PNK NF+F ++ + F+++ P
Sbjct: 143262 RYTFFIVLYPMGVMGELLTIYAALPYVQKAGLYSITLPNKYNFSFDYHTFLIFVMISYIP 143083
Score = 37.0 bits (84), Expect(2) = 9e-11, Method: Composition-based stats.
Identities = 18/36 (50%), Positives = 24/36 (66%)
Frame = -1
Query: 39 VVAWCLSEVIRYSFYGANLLNTTAPPLTWLRYSAFM 74
VVAW ++E+IRYSFY +LLN + W R AF+
Sbjct: 143480 VVAWTVTEIIRYSFYTFSLLNHLPYLIKWAR*LAFL 143373
>ref|XM_002178950.1| Phaeodactylum tricornutum CCAP 1055/1 predicted protein, mRNA
Length = 2480
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 52/154 (33%), Positives = 73/154 (47%), Gaps = 8/154 (5%)
Frame = +3
Query: 1 RSPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNT 60
RSPV T +QV+SR++ L V ++A M+++W EV RY+FY LL
Sbjct: 348 RSPVMVTAMQVMSRIVALVALVF--SSQAQTQWGAGLMIISWASVEVPRYAFYVTALLTG 521
Query: 61 TAP-----PLTWLRYSAFMVLYPVGITGEIGCLYKA---LPYIKKHKPWTVEMPNKLNFT 112
A PL WLRYS F +LYP GI GE+ A ++ K P +V + +
Sbjct: 522 DATKKTPFPLFWLRYSLFAILYPTGICGELTVFLAASKDQAFVDKFGPLSVTLYS----- 686
Query: 113 FSWYNSVWFILLGVYPYGSYVMYSYMLAQRRKMF 146
+L VY +GS M M+A R+ F
Sbjct: 687 --------IVLPIVYFFGSPFMIMNMVANRKSAF 764
>gb|EF081663.1| Picea sitchensis clone WS02729_F05 unknown mRNA
Length = 955
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 50/105 (47%), Positives = 62/105 (59%), Gaps = 2/105 (1%)
Frame = +1
Query: 41 AWCLSEVIRYSFYGANLLNTTAPPLTWLRYSAFMVLYPVG-ITGEIGCLYKALPYIK-KH 98
AW LSEVIRY Y N + LTWLRYSAF+VLYP+G + GE+ +Y ALPYIK KH
Sbjct: 439 AWSLSEVIRYPQYALNTVGHCPGWLTWLRYSAFVVLYPIGAMFGEVLTMYHALPYIK*KH 618
Query: 99 KPWTVEMPNKLNFTFSWYNSVWFILLGVYPYGSYVMYSYMLAQRR 143
+ +KL F+ Y S LL YP+ +Y YM QR+
Sbjct: 619 --LYGNLFDKLPFS---YYSFVMALLACYPFLWATLYMYMFKQRK 738
>gb|BT066270.1| Zea mays full-length cDNA clone ZM_BFc0150N12 mRNA, complete cds
Length = 2212
Score = 70.9 bits (172), Expect = 1e-10, Method: Composition-based stats.
Identities = 50/145 (34%), Positives = 76/145 (52%), Gaps = 1/145 (0%)
Frame = +1
Query: 1 RSPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYG-ANLLN 59
RSP+ TL QV +R+ V + V E + +V++W ++EVIRY F+G
Sbjct: 1627 RSPISATLPQVGARIFVTWCIV-WSFPETQSHVLVTSLVLSWSITEVIRYPFFGLREAFG 1803
Query: 60 TTAPPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYNSV 119
T L WLRYS F VLYPVG+ E+G ++ A+P++K +F ++
Sbjct: 1804 ITPSWLLWLRYSTFTVLYPVGLISELGLIFTAMPHMKGR-------------SFYICAAL 1944
Query: 120 WFILLGVYPYGSYVMYSYMLAQRRK 144
I + +P+ MY +MLAQR+K
Sbjct: 1945 TTIYIPAFPH----MYGHMLAQRKK 2007
Score = 41.6 bits (96), Expect(2) = 9e-07, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Frame = +1
Query: 1 RSPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVVAWCLSEVIRYSFYGANLLNT 60
RSPV TL Q+ SRL + G V E L ++++W ++E+IRYSF+
Sbjct: 202 RSPVSATLPQIGSRLFLT*G-VLWSFPETQSHLLATALIISWSVTEIIRYSFFAMKEAFG 378
Query: 61 TAPP-LTWL 68
+AP L+WL
Sbjct: 379 SAPSWLSWL 405
Score = 36.2 bits (82), Expect(2) = 9e-07, Method: Composition-based stats.
Identities = 16/32 (50%), Positives = 24/32 (75%)
Frame = +3
Query: 70 YSAFMVLYPVGITGEIGCLYKALPYIKKHKPW 101
YS+FM+ YP I+ E+G +Y ALPY+K H+ +
Sbjct: 507 YSSFMLFYPTCISSEVGLIYMALPYMKVHRSY 602
>ref|XM_001266987.1| Neosartorya fischeri NRRL 181 phosphatase-like protein (PTPLA),
putative (NFIA_105790) partial mRNA
Length = 747
Score = 70.9 bits (172), Expect = 1e-10, Method: Composition-based stats.
Identities = 55/168 (32%), Positives = 85/168 (50%), Gaps = 23/168 (13%)
Frame = +1
Query: 1 RSPVGTTLLQVLSRLIVLYGAVRL----------------------GDTEATRSLAFVQM 38
R+PV TT +QV SRL++++G + L G AF+
Sbjct: 259 RAPVMTTAMQVASRLLLVWGVMYLFHDRGDGHGGIVGGDFHEALPYGPGAKVGDYAFLGC 438
Query: 39 VVAWCLSEVIRYSFYGANLLNTTAPPL-TWLRYSAFMVLYPVGITGEIGCLYKALPYIKK 97
+ AW ++E IRY F+ + + P TWLRY+ F VLYP+GI+ E ++KAL K
Sbjct: 439 LGAWGVTECIRYGFFALQVWGSGVPSWWTWLRYNTFYVLYPIGISSECIMVWKAL---KP 609
Query: 98 HKPWTVEMPNKLNFTFSWYNSVWFILLGVYPYGSYVMYSYMLAQRRKM 145
W N + W+ ++L +Y GSY++Y++M+AQRRK+
Sbjct: 610 AAEW--------NPLYWWF---LVVVLVIYVPGSYILYTHMIAQRRKV 720
>ref|XM_746706.2| Aspergillus fumigatus Af293 phosphatase-like protein (PTPLA),
putative (AFUA_4G10270), partial mRNA
Length = 747
Score = 70.9 bits (172), Expect = 1e-10, Method: Composition-based stats.
Identities = 55/168 (32%), Positives = 85/168 (50%), Gaps = 23/168 (13%)
Frame = +1
Query: 1 RSPVGTTLLQVLSRLIVLYGAVRL----------------------GDTEATRSLAFVQM 38
R+PV TT +QV SRL++++G + L G AF+
Sbjct: 259 RAPVMTTAMQVASRLLLVWGVMYLFHDRGNGHGGIVGGDFHEALPYGPGAKVGDYAFLGC 438
Query: 39 VVAWCLSEVIRYSFYGANLLNTTAPPL-TWLRYSAFMVLYPVGITGEIGCLYKALPYIKK 97
+ AW ++E IRY F+ + + P TWLRY+ F VLYP+GI+ E ++KAL K
Sbjct: 439 LGAWGVTECIRYGFFALQVWGSGVPSWWTWLRYNTFYVLYPIGISSECIMVWKAL---KP 609
Query: 98 HKPWTVEMPNKLNFTFSWYNSVWFILLGVYPYGSYVMYSYMLAQRRKM 145
W N + W+ ++L +Y GSY++Y++M+AQRRK+
Sbjct: 610 AAEW--------NPLYWWF---LVVVLIIYVPGSYILYTHMIAQRRKV 720
>gb|BT005243.1| Arabidopsis thaliana At5g59770 mRNA, complete cds
Length = 666
Score = 70.9 bits (172), Expect = 1e-10, Method: Composition-based stats.
Identities = 42/104 (40%), Positives = 62/104 (59%)
Frame = +1
Query: 39 VVAWCLSEVIRYSFYGANLLNTTAPPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKH 98
+VAWC+ E+IRY Y L LT+LRY+ F+V+YP G+ GE+ +YKALPY+K+
Sbjct: 313 LVAWCIGEMIRYPHYAFTCLGRCPYWLTYLRYTGFIVIYPTGLVGELLIMYKALPYVKER 492
Query: 99 KPWTVEMPNKLNFTFSWYNSVWFILLGVYPYGSYVMYSYMLAQR 142
+ F FS+Y+ +W +LL VYP+ +Y + QR
Sbjct: 493 NLYANFFS---VFPFSYYDFLWAVLL-VYPFLWLKLYLQLFKQR 612
>ref|XM_001383590.1| Pichia stipitis CBS 6054 hypothetical protein partial mRNA
Length = 624
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 52/149 (34%), Positives = 76/149 (51%), Gaps = 3/149 (2%)
Frame = +1
Query: 1 RSPVGTTLLQVLSRLIVLYG-AVRLGDTEATRSL-AFVQMVVAWCLSEVIRYSFYGANLL 58
+SP+ T LLQ L+R I+ G +L + A +L AF + VAW L+E+IRY FY L
Sbjct: 196 KSPLLTVLLQTLARSIITIGICYKLPEAPANWNLPAFTAITVAWSLAEIIRYGFYAVKLA 375
Query: 59 NTTAPP-LTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHKPWTVEMPNKLNFTFSWYN 117
P + WLRY+ F++LYPVG+ E+ + AL Y S Y
Sbjct: 376 CDEVPSWMFWLRYNMFILLYPVGLVAELTVVISALKYTMG----------------SSYF 507
Query: 118 SVWFILLGVYPYGSYVMYSYMLAQRRKMF 146
L +Y G + +Y +M +QRRK++
Sbjct: 508 FFLLFALSMYLPGFFTLYGHMFSQRRKVY 594
>gb|BC151339.1| Bos taurus protein tyrosine phosphatase-like A domain containing 1,
mRNA (cDNA clone MGC:166273 IMAGE:8211693), complete cds
Length = 2843
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 47/149 (31%), Positives = 79/149 (53%), Gaps = 3/149 (2%)
Frame = +1
Query: 1 RSPVGTTLLQVLSRLIVLYGAVRLGDTEATRSLAFVQMVV-AWCLSEVIRYSFYGANLLN 59
+SPV +L Q+L R +L+ + G E ++ A V V W E+ RY FY + ++
Sbjct: 742 KSPVVPSLFQLLGRNFILF--IIFGTMEEMQNKAVVFFVFYIWSTVEIFRYPFYMLSCID 915
Query: 60 TTAPPLTWLRYSAFMVLYPVGITGEIGCLYKALPYIKKHK--PWTVEMPNKLNFTFSWYN 117
LTWLRY+ ++ LYP+G E + +++P + +T+ P K+ FS++
Sbjct: 916 MDWKVLTWLRYTVWIPLYPMGCLAEAVSVIQSIPVFNETGRFSFTLPYPVKIKVRFSFFL 1095
Query: 118 SVWFILLGVYPYGSYVMYSYMLAQRRKMF 146
++ ILL + G YV + Y+ QRR+ F
Sbjct: 1096QIYLILLFL---GLYVNFRYLYKQRRRRF 1173
>ref|XM_001271901.1| Aspergillus clavatus NRRL 1 phosphatase-like protein (PTPLA),
putative (ACLA_049480), partial mRNA
Length = 741
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 56/172 (32%), Positives = 84/172 (48%), Gaps = 26/172 (15%)
Frame = +1
Query: 1 RSPVGTTLLQVLSRLIVLYGAVRL----------------------GDTEATRSLAFVQM 38
R+PV TT +QV SRL++++G + L G AF+
Sbjct: 253 RAPVVTTAMQVASRLLLVWGVMYLFHDRGDGQGGIVGGDFHEALPQGPGAKVGDYAFMGC 432
Query: 39 VVAWCLSEVIRYSFYGANLLNTTAPPL-TWLRYSAFMVLYPVGITGEIGCLYKAL-PYIK 96
+ AW ++E IRY F+ + + P TWLRY+ F VLYP+GI+ E L KAL P +
Sbjct: 433 LSAWGITECIRYGFFALQVWGSGVPSWWTWLRYNTFYVLYPLGISSECVMLLKALKPAAE 612
Query: 97 KHKPWTVEMPNKLNFTFSWYNSVWFIL--LGVYPYGSYVMYSYMLAQRRKMF 146
H + WF++ L +Y GSY++Y++M+AQRRK+
Sbjct: 613 WHHLYR-----------------WFLVANLVIYVPGSYILYTHMIAQRRKVL 717
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.331 0.142 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 541591500
Number of extensions: 9066843
Number of successful extensions: 57761
Number of sequences better than 10: 34
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 57708
Number of HSP's successfully gapped: 42
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 15 (7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.0 bits)
S2: 78 (34.7 bits)
Query= gi|154332242|ref|NC_009298.1|:subseq(84891,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 5
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
ref|XM_001561791.1| Leishmania braziliensis MHOM/BR/75/M2904 pro... 90 3e-16
emb|AM494942.1| Leishmania braziliensis chromosome 5 90 3e-16
ref|XM_001462951.1| Leishmania infantum protein tyrosine phospha... 53 4e-05
emb|AM502223.1| Leishmania infantum chromosome 5 53 4e-05
ref|XM_001687452.1| Leishmania major strain Friedlin protein tyr... 50 2e-04
>ref|XM_001561791.1| Leishmania braziliensis MHOM/BR/75/M2904 protein tyrosine
phosphatase, putative (LbrM05_V2.0270) partial mRNA
Length = 675
Score = 89.7 bits (221), Expect = 3e-16, Method: Composition-based stats.
Identities = 75/103 (72%), Positives = 75/103 (72%)
Frame = +2
Query: 1 AVPSAPPSCRFCRASSCCTVPCASVTRRRHGASPLCRWWSPGASARSFATPFTVRTSSTP 60
AVPSAPPSCRFCRASSCCTVPCASVTRRRHGASPLCRWWSPGASARSFATPFTVRTSSTP
Sbjct: 200 AVPSAPPSCRFCRASSCCTVPCASVTRRRHGASPLCRWWSPGASARSFATPFTVRTSSTP 379
Query: 61 LLRRUHGCATPPXXXXXXXXXXXXXXXXXXXXXXXXXXXHGQW 103
LLRR HGCATPP HGQW
Sbjct: 380 LLRR*HGCATPPSWSSTQSASRVRSAASTRRCRTSRSTSHGQW 508
>emb|AM494942.1| Leishmania braziliensis chromosome 5
Length = 459355
Score = 89.7 bits (221), Expect = 3e-16, Method: Composition-based stats.
Identities = 75/103 (72%), Positives = 75/103 (72%)
Frame = +2
Query: 1 AVPSAPPSCRFCRASSCCTVPCASVTRRRHGASPLCRWWSPGASARSFATPFTVRTSSTP 60
AVPSAPPSCRFCRASSCCTVPCASVTRRRHGASPLCRWWSPGASARSFATPFTVRTSSTP
Sbjct: 84893 AVPSAPPSCRFCRASSCCTVPCASVTRRRHGASPLCRWWSPGASARSFATPFTVRTSSTP 85072
Query: 61 LLRRUHGCATPPXXXXXXXXXXXXXXXXXXXXXXXXXXXHGQW 103
LLRR HGCATPP HGQW
Sbjct: 85073 LLRR*HGCATPPSWSSTQSASRVRSAASTRRCRTSRSTSHGQW 85201
>ref|XM_001462951.1| Leishmania infantum protein tyrosine phosphatase, putative
(LinJ05.0250) partial mRNA
Length = 675
Score = 52.8 bits (125), Expect = 4e-05, Method: Composition-based stats.
Identities = 50/72 (69%), Positives = 52/72 (72%)
Frame = +2
Query: 1 AVPSAPPSCRFCRASSCCTVPCASVTRRRHGASPLCRWWSPGASARSFATPFTVRTSSTP 60
A SA PSCR CRASSCCTVPCAS TR AS LCR WSPGA A+ FAT T RTSS
Sbjct: 200 AAQSARPSCRSCRASSCCTVPCASATRIPQRASCLCRCWSPGA*AK*FATRSTARTSSAS 379
Query: 61 LLRRUHGCATPP 72
+LRR GCATPP
Sbjct: 380 ILRR*RGCATPP 415
>emb|AM502223.1| Leishmania infantum chromosome 5
Length = 455874
Score = 52.8 bits (125), Expect = 4e-05, Method: Composition-based stats.
Identities = 50/72 (69%), Positives = 52/72 (72%)
Frame = +2
Query: 1 AVPSAPPSCRFCRASSCCTVPCASVTRRRHGASPLCRWWSPGASARSFATPFTVRTSSTP 60
A SA PSCR CRASSCCTVPCAS TR AS LCR WSPGA A+ FAT T RTSS
Sbjct: 73685 AAQSARPSCRSCRASSCCTVPCASATRIPQRASCLCRCWSPGA*AK*FATRSTARTSSAS 73864
Query: 61 LLRRUHGCATPP 72
+LRR GCATPP
Sbjct: 73865 ILRR*RGCATPP 73900
>ref|XM_001687452.1| Leishmania major strain Friedlin protein tyrosine phosphatase,
putative (LmjF05.0280) partial mRNA
Length = 675
Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 49/72 (68%), Positives = 51/72 (70%)
Frame = +2
Query: 1 AVPSAPPSCRFCRASSCCTVPCASVTRRRHGASPLCRWWSPGASARSFATPFTVRTSSTP 60
A SA SCR CRASSCCTVPCAS TR AS LCR W PGA A+ FAT TVRTSS
Sbjct: 200 AAQSARHSCRSCRASSCCTVPCASATRTPQRASCLCRCWLPGA*AK*FATRSTVRTSSAS 379
Query: 61 LLRRUHGCATPP 72
+LRR GCATPP
Sbjct: 380 MLRR*RGCATPP 415
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.327 0.133 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 417198157
Number of extensions: 7903736
Number of successful extensions: 126121
Number of sequences better than 10: 71
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 125538
Number of HSP's successfully gapped: 92
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 15 (7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.0 bits)
S2: 78 (34.7 bits)
Query= gi|154332242|ref|NC_009298.1|:subseq(84891,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 5
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
emb|AM494942.1| Leishmania braziliensis chromosome 5 244 9e-63
ref|XM_001561791.1| Leishmania braziliensis MHOM/BR/75/M2904 pro... 217 8e-55
emb|AM502223.1| Leishmania infantum chromosome 5 153 2e-35
ref|XM_001687452.1| Leishmania major strain Friedlin protein tyr... 146 2e-33
ref|XM_001462951.1| Leishmania infantum protein tyrosine phospha... 140 1e-31
ref|XM_800294.1| Trypanosoma cruzi strain CL Brener protein tyro... 42 0.056
>emb|AM494942.1| Leishmania braziliensis chromosome 5
Length = 459355
Score = 244 bits (622), Expect = 9e-63, Method: Composition-based stats.
Identities = 145/166 (87%), Positives = 145/166 (87%)
Frame = +3
Query: 1 QSRRHHPLAGFVAPHRAVRCRAPRUHGGDTEPRLCADGGRLVPQRGHSLLLLRCEPPQHH 60
QSRRHHPLAGFVAPHRAVRCRAPR HGGDTEPRLCADGGRLVPQRGHSLLLLRCEPPQHH
Sbjct: 84894 QSRRHHPLAGFVAPHRAVRCRAPR*HGGDTEPRLCADGGRLVPQRGHSLLLLRCEPPQHH 85073
Query: 61 CSAADMAALLRLHGPLPSRHHGUDRLPLQGAAVHQEAQAMDSGDAEQAEXXXXXXXXXXX 120
CSAADMAALLRLHGPLPSRHHG DRLPLQGAAVHQEAQAMDSGDAEQAE
Sbjct: 85074 CSAADMAALLRLHGPLPSRHHG*DRLPLQGAAVHQEAQAMDSGDAEQAELHVLVVQQRVV 85253
Query: 121 XXXXXXXXWQLRHVLLYARSAPQDVRQGRLRESEEVGVGLVPCHAC 166
WQLRHVLLYARSAPQDVRQGRLRESEEVGVGLVPCHAC
Sbjct: 85254 HPPRRLPLWQLRHVLLYARSAPQDVRQGRLRESEEVGVGLVPCHAC 85391
>ref|XM_001561791.1| Leishmania braziliensis MHOM/BR/75/M2904 protein tyrosine
phosphatase, putative (LbrM05_V2.0270) partial mRNA
Length = 675
Score = 217 bits (553), Expect = 8e-55, Method: Composition-based stats.
Identities = 137/158 (86%), Positives = 137/158 (86%)
Frame = +3
Query: 1 QSRRHHPLAGFVAPHRAVRCRAPRUHGGDTEPRLCADGGRLVPQRGHSLLLLRCEPPQHH 60
QSRRHHPLAGFVAPHRAVRCRAPR HGGDTEPRLCADGGRLVPQRGHSLLLLRCEPPQHH
Sbjct: 201 QSRRHHPLAGFVAPHRAVRCRAPR*HGGDTEPRLCADGGRLVPQRGHSLLLLRCEPPQHH 380
Query: 61 CSAADMAALLRLHGPLPSRHHGUDRLPLQGAAVHQEAQAMDSGDAEQAEXXXXXXXXXXX 120
CSAADMAALLRLHGPLPSRHHG DRLPLQGAAVHQEAQAMDSGDAEQAE
Sbjct: 381 CSAADMAALLRLHGPLPSRHHG*DRLPLQGAAVHQEAQAMDSGDAEQAELHVLVVQQRVV 560
Query: 121 XXXXXXXXWQLRHVLLYARSAPQDVRQGRLRESEEVGV 158
WQLRHVLLYARSAPQDVRQGRLRESEEVGV
Sbjct: 561 HPPRRLPLWQLRHVLLYARSAPQDVRQGRLRESEEVGV 674
>emb|AM502223.1| Leishmania infantum chromosome 5
Length = 455874
Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats.
Identities = 97/166 (58%), Positives = 113/166 (68%)
Frame = +3
Query: 1 QSRRHHPLAGFVAPHRAVRCRAPRUHGGDTEPRLCADGGRLVPQRGHSLLLLRCEPPQHH 60
Q RH AG VAPHRAVRCRA R HG EPR+CAD GRLVP+R +SLL+LR EPP
Sbjct: 73686 QPSRHDLPAGLVAPHRAVRCRAHRRHGFHKEPRVCADAGRLVPERNNSLLVLRREPPPRQ 73865
Query: 61 CSAADMAALLRLHGPLPSRHHGUDRLPLQGAAVHQEAQAMDSGDAEQAEXXXXXXXXXXX 120
AD+AALLRLHG LP RHH +R+P+QGA V+QEAQA+D G AEQAE
Sbjct: 73866 SCVADVAALLRLHGALPCRHHRRNRMPVQGATVYQEAQAVDRGAAEQAELHLLVVQHRVV 74045
Query: 121 XXXXXXXXWQLRHVLLYARSAPQDVRQGRLRESEEVGVGLVPCHAC 166
QLRHVL++AR+AP+DVR+ R+RE EEVGV P HAC
Sbjct: 74046 HSPRHIPLRQLRHVLVHARAAPKDVRKVRVREVEEVGVRRTPAHAC 74183
>ref|XM_001687452.1| Leishmania major strain Friedlin protein tyrosine phosphatase,
putative (LmjF05.0280) partial mRNA
Length = 675
Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats.
Identities = 98/158 (62%), Positives = 110/158 (69%)
Frame = +3
Query: 1 QSRRHHPLAGFVAPHRAVRCRAPRUHGGDTEPRLCADGGRLVPQRGHSLLLLRCEPPQHH 60
Q RH AG VAPHRAVRCRA R HG EPR+CAD G LVP+R +SLL+LRCEPP
Sbjct: 201 QPSRHDIPAGPVAPHRAVRCRAHRRHGLHKEPRVCADAGCLVPERNNSLLVLRCEPPPRQ 380
Query: 61 CSAADMAALLRLHGPLPSRHHGUDRLPLQGAAVHQEAQAMDSGDAEQAEXXXXXXXXXXX 120
C AD+AALLRLHG LP R+H DRLP+QGAAVHQEAQ +D G AEQAE
Sbjct: 381 CCVADVAALLRLHGALPCRYHRRDRLPVQGAAVHQEAQTVDRGAAEQAELHLLVVQRRVV 560
Query: 121 XXXXXXXXWQLRHVLLYARSAPQDVRQGRLRESEEVGV 158
QLRHVLL+AR+APQDVR+GR RE EEVG+
Sbjct: 561 HPPRHIPLRQLRHVLLHARAAPQDVRKGRAREVEEVGI 674
>ref|XM_001462951.1| Leishmania infantum protein tyrosine phosphatase, putative
(LinJ05.0250) partial mRNA
Length = 675
Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 93/158 (58%), Positives = 109/158 (68%)
Frame = +3
Query: 1 QSRRHHPLAGFVAPHRAVRCRAPRUHGGDTEPRLCADGGRLVPQRGHSLLLLRCEPPQHH 60
Q RH AG VAPHRAVRCRA R HG EPR+CAD GRLVP+R +SLL+LR EPP
Sbjct: 201 QPSRHDLPAGLVAPHRAVRCRAHRRHGFHKEPRVCADAGRLVPERNNSLLVLRREPPPRQ 380
Query: 61 CSAADMAALLRLHGPLPSRHHGUDRLPLQGAAVHQEAQAMDSGDAEQAEXXXXXXXXXXX 120
AD+AALLRLHG LP RHH +R+P+QGA V+QEAQA+D G AEQAE
Sbjct: 381 SCVADVAALLRLHGALPCRHHRRNRMPVQGATVYQEAQAVDRGAAEQAELHLLVVQHRVV 560
Query: 121 XXXXXXXXWQLRHVLLYARSAPQDVRQGRLRESEEVGV 158
QLRHVL++AR+AP+DVR+ R+RE EEVGV
Sbjct: 561 HSPRHIPLRQLRHVLVHARAAPKDVRKVRVREVEEVGV 674
>ref|XM_800294.1| Trypanosoma cruzi strain CL Brener protein tyrosine phosphatase
partial mRNA
Length = 705
Score = 42.4 bits (98), Expect = 0.056, Method: Composition-based stats.
Identities = 39/136 (28%), Positives = 59/136 (43%)
Frame = +3
Query: 2 SRRHHPLAGFVAPHRAVRCRAPRUHGGDTEPRLCADGGRLVPQRGHSLLLLRCEPPQHHC 61
SR HH A + P+ V + + P L +DG LV +SL LL EP
Sbjct: 201 SRSHHLYASVITPYCVVWFTKDWPNRVSS*PLLYSDGCGLVVVGDYSLCLLCNEPT*L*T 380
Query: 62 SAADMAALLRLHGPLPSRHHGUDRLPLQGAAVHQEAQAMDSGDAEQAEXXXXXXXXXXXX 121
+A++ +H LP H + L LQG+++HQ QA+ +G A+ +
Sbjct: 381 QDTHVASIHCIHVALPRWHQRGNWLLLQGSSIHQGEQAVVNGTAQPLQLDLFVVQYRVAY 560
Query: 122 XXXXXXXWQLRHVLLY 137
WQL HV ++
Sbjct: 561 PPWPLPIWQLCHVHIH 608
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.323 0.137 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 612278295
Number of extensions: 10868773
Number of successful extensions: 54939
Number of sequences better than 10: 8
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 54883
Number of HSP's successfully gapped: 9
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 16 (7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 78 (34.7 bits)
Query= gi|154332491|ref|NC_009299.1|:subseq(114615,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 7
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
ref|XM_001562475.1| Leishmania braziliensis MHOM/BR/75/M2904 ubi... 88 7e-16
emb|AM494944.1| Leishmania braziliensis chromosome 7 88 7e-16
ref|XM_001463200.1| Leishmania infantum ubiquitin-protein ligase... 65 1e-08
emb|AM502225.1| Leishmania infantum chromosome 7 65 1e-08
ref|XM_001680880.1| Leishmania major ubiquitin-protein ligase-li... 61 1e-07
>ref|XM_001562475.1| Leishmania braziliensis MHOM/BR/75/M2904 ubiquitin-protein ligase-like,
putative (LbrM07_V2.0290) partial mRNA
Length = 18747
Score = 88.2 bits (217), Expect = 7e-16, Method: Composition-based stats.
Identities = 49/81 (60%), Positives = 49/81 (60%)
Frame = -1
Query: 46 HQVQQLAGDSDRCACVGHEQLHEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDATSNNV 105
HQVQQLAGDSDRCACVGHEQLHE DATSNNV
Sbjct: 15753 HQVQQLAGDSDRCACVGHEQLHEAL*LLVQAADACQQVARQRQRRRCPQSQQLDATSNNV 15574
Query: 106 LWYVRXGQGEGVIQUFLYWNH 126
LWYVR GQGEGVIQ FLYWNH
Sbjct: 15573 LWYVR*GQGEGVIQ*FLYWNH 15511
>emb|AM494944.1| Leishmania braziliensis chromosome 7
Length = 586128
Score = 88.2 bits (217), Expect = 7e-16, Method: Composition-based stats.
Identities = 49/81 (60%), Positives = 49/81 (60%)
Frame = +1
Query: 46 HQVQQLAGDSDRCACVGHEQLHEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDATSNNV 105
HQVQQLAGDSDRCACVGHEQLHE DATSNNV
Sbjct: 114751 HQVQQLAGDSDRCACVGHEQLHEAL*LLVQAADACQQVARQRQRRRCPQSQQLDATSNNV 114930
Query: 106 LWYVRXGQGEGVIQUFLYWNH 126
LWYVR GQGEGVIQ FLYWNH
Sbjct: 114931 LWYVR*GQGEGVIQ*FLYWNH 114993
>ref|XM_001463200.1| Leishmania infantum ubiquitin-protein ligase-like, putative
(LinJ07.0260) partial mRNA
Length = 18300
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 38/81 (46%), Positives = 45/81 (55%)
Frame = -1
Query: 46 HQVQQLAGDSDRCACVGHEQLHEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDATSNNV 105
HQVQQLAGDS R ACVGHEQLHE DA SNN+
Sbjct: 15285 HQVQQLAGDSHRRACVGHEQLHEAL*LLIQAADARQ*VARQRQRRRRPQP*QLDAASNNI 15106
Query: 106 LWYVRXGQGEGVIQUFLYWNH 126
LW++R G+GE V+Q FL+W+H
Sbjct: 15105 LWHIR*GKGERVVQCFLHWHH 15043
>emb|AM502225.1| Leishmania infantum chromosome 7
Length = 591632
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 38/81 (46%), Positives = 45/81 (55%)
Frame = +3
Query: 46 HQVQQLAGDSDRCACVGHEQLHEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDATSNNV 105
HQVQQLAGDS R ACVGHEQLHE DA SNN+
Sbjct: 110196 HQVQQLAGDSHRRACVGHEQLHEAL*LLIQAADARQ*VARQRQRRRRPQP*QLDAASNNI 110375
Query: 106 LWYVRXGQGEGVIQUFLYWNH 126
LW++R G+GE V+Q FL+W+H
Sbjct: 110376 LWHIR*GKGERVVQCFLHWHH 110438
>ref|XM_001680880.1| Leishmania major ubiquitin-protein ligase-like, putative (LmjF07.0280)
partial mRNA
Length = 18783
Score = 60.8 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 35/81 (43%), Positives = 43/81 (53%)
Frame = -1
Query: 46 HQVQQLAGDSDRCACVGHEQLHEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDATSNNV 105
HQVQQLAG+S R ACVG E LHE DA SNN+
Sbjct: 15768 HQVQQLAGNSHRRACVGDEHLHEAL*LLIQAADARQQVARQRQRRRRPQP*QLDAASNNL 15589
Query: 106 LWYVRXGQGEGVIQUFLYWNH 126
LW++R G+GE V+Q FL+W+H
Sbjct: 15588 LWHIR*GKGERVVQCFLHWHH 15526
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.327 0.141 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 189850631
Number of extensions: 843983
Number of successful extensions: 3994
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 3994
Number of HSP's successfully gapped: 0
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 15 (7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.0 bits)
S2: 78 (34.7 bits)
Query= gi|154332491|ref|NC_009299.1|:subseq(114615,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 7
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
ref|XM_001562475.1| Leishmania braziliensis MHOM/BR/75/M2904 ubi... 192 3e-47
emb|AM494944.1| Leishmania braziliensis chromosome 7 192 3e-47
ref|XM_001463200.1| Leishmania infantum ubiquitin-protein ligase... 114 1e-23
emb|AM502225.1| Leishmania infantum chromosome 7 114 1e-23
ref|XM_001680880.1| Leishmania major ubiquitin-protein ligase-li... 111 7e-23
>ref|XM_001562475.1| Leishmania braziliensis MHOM/BR/75/M2904 ubiquitin-protein ligase-like,
putative (LbrM07_V2.0290) partial mRNA
Length = 18747
Score = 192 bits (488), Expect = 3e-47, Method: Composition-based stats.
Identities = 130/166 (78%), Positives = 130/166 (78%)
Frame = -2
Query: 1 NVRGKRDNGAAGEDGDARGVAGADLPRPAAPLRDXXXXXXXXXXXXXXXXWQAIRTAVPV 60
NVRGKRDNGAAGEDGDARGVAGADLPRPAAPLRD WQAIRTAVPV
Sbjct: 15887 NVRGKRDNGAAGEDGDARGVAGADLPRPAAPLRDASSVVVVGVAAIKSSSWQAIRTAVPV 15708
Query: 61 LDMSSCMKRCSSWSRQLMPVSKLHGSASGAVARNRSSSMQXXXXXXXXXXXXXXXXXXXD 120
LDMSSCMKRCSSWSRQLMPVSKLHGSASGAVARNRSSSMQ D
Sbjct: 15707 LDMSSCMKRCSSWSRQLMPVSKLHGSASGAVARNRSSSMQRATMSSGTSGRGRARG*YSD 15528
Query: 121 SCTGTIESLSAASDVNGVVGAAUGPEAECSVAKAPPPPLGCVCGDG 166
SCTGTIESLSAASDVNGVVGAA GPEAECSVAKAPPPPLGCVCGDG
Sbjct: 15527 SCTGTIESLSAASDVNGVVGAA*GPEAECSVAKAPPPPLGCVCGDG 15390
>emb|AM494944.1| Leishmania braziliensis chromosome 7
Length = 586128
Score = 192 bits (488), Expect = 3e-47, Method: Composition-based stats.
Identities = 130/166 (78%), Positives = 130/166 (78%)
Frame = +2
Query: 1 NVRGKRDNGAAGEDGDARGVAGADLPRPAAPLRDXXXXXXXXXXXXXXXXWQAIRTAVPV 60
NVRGKRDNGAAGEDGDARGVAGADLPRPAAPLRD WQAIRTAVPV
Sbjct: 114617 NVRGKRDNGAAGEDGDARGVAGADLPRPAAPLRDASSVVVVGVAAIKSSSWQAIRTAVPV 114796
Query: 61 LDMSSCMKRCSSWSRQLMPVSKLHGSASGAVARNRSSSMQXXXXXXXXXXXXXXXXXXXD 120
LDMSSCMKRCSSWSRQLMPVSKLHGSASGAVARNRSSSMQ D
Sbjct: 114797 LDMSSCMKRCSSWSRQLMPVSKLHGSASGAVARNRSSSMQRATMSSGTSGRGRARG*YSD 114976
Query: 121 SCTGTIESLSAASDVNGVVGAAUGPEAECSVAKAPPPPLGCVCGDG 166
SCTGTIESLSAASDVNGVVGAA GPEAECSVAKAPPPPLGCVCGDG
Sbjct: 114977 SCTGTIESLSAASDVNGVVGAA*GPEAECSVAKAPPPPLGCVCGDG 115114
>ref|XM_001463200.1| Leishmania infantum ubiquitin-protein ligase-like, putative
(LinJ07.0260) partial mRNA
Length = 18300
Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats.
Identities = 94/170 (55%), Positives = 102/170 (60%), Gaps = 6/170 (3%)
Frame = -2
Query: 3 RGKRDNGAAGEDGDARGVAGADL------PRPAAPLRDXXXXXXXXXXXXXXXXWQAIRT 56
R K D+G A DGDAR A A + P+PAA WQAIRT
Sbjct: 15431 REKWDDGVASVDGDARAAALALVVAVATLPKPAALSGSASSAVDVGVAAIKSSSWQAIRT 15252
Query: 57 AVPVLDMSSCMKRCSSWSRQLMPVSKLHGSASGAVARNRSSSMQXXXXXXXXXXXXXXXX 116
AV V DMSSCMKRCSS SRQLMPVS+LHGSASGAVAR+RSSSMQ
Sbjct: 15251 AVLVSDMSSCMKRCSS*SRQLMPVSRLHGSASGAVARSRSSSMQRATTSSGTSGKGRASG 15072
Query: 117 XXXDSCTGTIESLSAASDVNGVVGAAUGPEAECSVAKAPPPPLGCVCGDG 166
SCTGT++SLSAASDV+G AA PEAE S AK PPPPLG VCG G
Sbjct: 15071 WYNVSCTGTMDSLSAASDVDG-AAAACDPEAERSAAKPPPPPLGSVCGGG 14925
>emb|AM502225.1| Leishmania infantum chromosome 7
Length = 591632
Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats.
Identities = 94/170 (55%), Positives = 102/170 (60%), Gaps = 6/170 (3%)
Frame = +1
Query: 3 RGKRDNGAAGEDGDARGVAGADL------PRPAAPLRDXXXXXXXXXXXXXXXXWQAIRT 56
R K D+G A DGDAR A A + P+PAA WQAIRT
Sbjct: 110050 REKWDDGVASVDGDARAAALALVVAVATLPKPAALSGSASSAVDVGVAAIKSSSWQAIRT 110229
Query: 57 AVPVLDMSSCMKRCSSWSRQLMPVSKLHGSASGAVARNRSSSMQXXXXXXXXXXXXXXXX 116
AV V DMSSCMKRCSS SRQLMPVS+LHGSASGAVAR+RSSSMQ
Sbjct: 110230 AVLVSDMSSCMKRCSS*SRQLMPVSRLHGSASGAVARSRSSSMQRATTSSGTSGKGRASG 110409
Query: 117 XXXDSCTGTIESLSAASDVNGVVGAAUGPEAECSVAKAPPPPLGCVCGDG 166
SCTGT++SLSAASDV+G AA PEAE S AK PPPPLG VCG G
Sbjct: 110410 WYNVSCTGTMDSLSAASDVDG-AAAACDPEAERSAAKPPPPPLGSVCGGG 110556
>ref|XM_001680880.1| Leishmania major ubiquitin-protein ligase-like, putative (LmjF07.0280)
partial mRNA
Length = 18783
Score = 111 bits (278), Expect = 7e-23, Method: Composition-based stats.
Identities = 78/141 (55%), Positives = 86/141 (60%)
Frame = -2
Query: 26 PRPAAPLRDXXXXXXXXXXXXXXXXWQAIRTAVPVLDMSSCMKRCSSWSRQLMPVSKLHG 85
P+PAA WQA RTAV V +MS+CMKRCSS SRQLMPVS+LHG
Sbjct: 15827 PKPAALSGSASSAVVVGVAAIKSSSWQATRTAVLVSEMSTCMKRCSS*SRQLMPVSRLHG 15648
Query: 86 SASGAVARNRSSSMQXXXXXXXXXXXXXXXXXXXDSCTGTIESLSAASDVNGVVGAAUGP 145
SASGAVAR+RSSSMQ SCTGT++SLSAASDV+G AA P
Sbjct: 15647 SASGAVARSRSSSMQRATISSGTSGKGRASGWYNVSCTGTMDSLSAASDVDG-AAAACDP 15471
Query: 146 EAECSVAKAPPPPLGCVCGDG 166
EAE S AK PPP LG VCG G
Sbjct: 15470 EAERSAAKTPPPSLGSVCGGG 15408
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.313 0.128 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 478688088
Number of extensions: 6125723
Number of successful extensions: 42770
Number of sequences better than 10: 1
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 42743
Number of HSP's successfully gapped: 2
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 16 (7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (20.8 bits)
S2: 78 (34.7 bits)
Query= gi|154332491|ref|NC_009299.1|:subseq(114615,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 7
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
ref|XM_001562475.1| Leishmania braziliensis MHOM/BR/75/M2904 ubi... 135 6e-30
emb|AM494944.1| Leishmania braziliensis chromosome 7 135 6e-30
ref|XM_001463200.1| Leishmania infantum ubiquitin-protein ligase... 49 4e-04
emb|AM502225.1| Leishmania infantum chromosome 7 49 4e-04
ref|XM_001680880.1| Leishmania major ubiquitin-protein ligase-li... 49 6e-04
>ref|XM_001562475.1| Leishmania braziliensis MHOM/BR/75/M2904 ubiquitin-protein ligase-like,
putative (LbrM07_V2.0290) partial mRNA
Length = 18747
Score = 135 bits (339), Expect = 6e-30, Method: Composition-based stats.
Identities = 89/142 (62%), Positives = 89/142 (62%)
Frame = -3
Query: 25 CQGLPRRUGTHXXXXXXXXXXXXXXXGRRFGPLCLCWTXXXXXXXXXXXXXXXCLSASCT 84
CQGLPRR GTH GRRFGPLCLCWT CLSASCT
Sbjct: 15814 CQGLPRR*GTHPPLSSSAWLPSSPAAGRRFGPLCLCWT*AAA*SVVAPGPGS*CLSASCT 15635
Query: 85 XXXXXXXXXXXXXRCNEQQCPLVRQVGAGRGGDTVIPVLEPSNHSALQAMSTASSAPREA 144
RCNEQQCPLVRQVGAGRGGDTVIPVLEPSNHSALQAMSTASSAPREA
Sbjct: 15634 AAPAAPLPAIAAARCNEQQCPLVRQVGAGRGGDTVIPVLEPSNHSALQAMSTASSAPREA 15455
Query: 145 PKRNAPWQXXXXXXXXXYAVTV 166
PKRNAPWQ YAVTV
Sbjct: 15454 PKRNAPWQRRHHRR*AAYAVTV 15389
>emb|AM494944.1| Leishmania braziliensis chromosome 7
Length = 586128
Score = 135 bits (339), Expect = 6e-30, Method: Composition-based stats.
Identities = 89/142 (62%), Positives = 89/142 (62%)
Frame = +3
Query: 25 CQGLPRRUGTHXXXXXXXXXXXXXXXGRRFGPLCLCWTXXXXXXXXXXXXXXXCLSASCT 84
CQGLPRR GTH GRRFGPLCLCWT CLSASCT
Sbjct: 114690 CQGLPRR*GTHPPLSSSAWLPSSPAAGRRFGPLCLCWT*AAA*SVVAPGPGS*CLSASCT 114869
Query: 85 XXXXXXXXXXXXXRCNEQQCPLVRQVGAGRGGDTVIPVLEPSNHSALQAMSTASSAPREA 144
RCNEQQCPLVRQVGAGRGGDTVIPVLEPSNHSALQAMSTASSAPREA
Sbjct: 114870 AAPAAPLPAIAAARCNEQQCPLVRQVGAGRGGDTVIPVLEPSNHSALQAMSTASSAPREA 115049
Query: 145 PKRNAPWQXXXXXXXXXYAVTV 166
PKRNAPWQ YAVTV
Sbjct: 115050 PKRNAPWQRRHHRR*AAYAVTV 115115
>ref|XM_001463200.1| Leishmania infantum ubiquitin-protein ligase-like, putative
(LinJ07.0260) partial mRNA
Length = 18300
Score = 49.3 bits (116), Expect = 4e-04, Method: Composition-based stats.
Identities = 39/113 (34%), Positives = 43/113 (38%)
Frame = -3
Query: 25 CQGLPRRUGTHXXXXXXXXXXXXXXXGRRFGPLCLCWTXXXXXXXXXXXXXXXCLSASCT 84
C+ R H GRRF P CLC T C S CT
Sbjct: 15346 CRSQRRCRAAHPPLSTSAWLPSSPAVGRRFAPPCLCRT*AAA*SAVAPDPGS*CPSVGCT 15167
Query: 85 XXXXXXXXXXXXXRCNEQQCPLVRQVGAGRGGDTVIPVLEPSNHSALQAMSTA 137
RC+EQQ PL QV GR G T+ P L P SAL+A STA
Sbjct: 15166 AAPAAPSPAAVAARCSEQQHPLAHQVREGRAGGTMFPALAPWTRSALRATSTA 15008
>emb|AM502225.1| Leishmania infantum chromosome 7
Length = 591632
Score = 49.3 bits (116), Expect = 4e-04, Method: Composition-based stats.
Identities = 39/113 (34%), Positives = 43/113 (38%)
Frame = +2
Query: 25 CQGLPRRUGTHXXXXXXXXXXXXXXXGRRFGPLCLCWTXXXXXXXXXXXXXXXCLSASCT 84
C+ R H GRRF P CLC T C S CT
Sbjct: 110135 CRSQRRCRAAHPPLSTSAWLPSSPAVGRRFAPPCLCRT*AAA*SAVAPDPGS*CPSVGCT 110314
Query: 85 XXXXXXXXXXXXXRCNEQQCPLVRQVGAGRGGDTVIPVLEPSNHSALQAMSTA 137
RC+EQQ PL QV GR G T+ P L P SAL+A STA
Sbjct: 110315 AAPAAPSPAAVAARCSEQQHPLAHQVREGRAGGTMFPALAPWTRSALRATSTA 110473
>ref|XM_001680880.1| Leishmania major ubiquitin-protein ligase-like, putative (LmjF07.0280)
partial mRNA
Length = 18783
Score = 48.5 bits (114), Expect = 6e-04, Method: Composition-based stats.
Identities = 38/113 (33%), Positives = 43/113 (38%)
Frame = -3
Query: 25 CQGLPRRUGTHXXXXXXXXXXXXXXXGRRFGPLCLCWTXXXXXXXXXXXXXXXCLSASCT 84
C+ R H GR+ P CLC C SA CT
Sbjct: 15829 CRSQRRCRAAHPLLSSSAWLPSSPAVGRQLAPPCLCRR*APA*SAVAPDPGS*CPSAGCT 15650
Query: 85 XXXXXXXXXXXXXRCNEQQCPLVRQVGAGRGGDTVIPVLEPSNHSALQAMSTA 137
RC+EQQ PL QV GR G T+ P L P HSAL+A STA
Sbjct: 15649 AAPAAPSPAAVAARCSEQQSPLAHQVREGRAGGTMFPALAPWTHSALRATSTA 15491
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.322 0.133 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 316548210
Number of extensions: 3287428
Number of successful extensions: 16500
Number of sequences better than 10: 1
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 16498
Number of HSP's successfully gapped: 1
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 16 (7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 78 (34.7 bits)
Query= gi|154332491|ref|NC_009299.1|:subseq(128008,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 7:[revcomp]
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
emb|AM494944.1| Leishmania braziliensis chromosome 7 209 3e-52
ref|XM_001562543.1| Leishmania braziliensis MHOM/BR/75/M2904 hyp... 184 1e-44
emb|AM502225.1| Leishmania infantum chromosome 7 128 7e-28
ref|XM_001463271.1| Leishmania infantum hypothetical protein, co... 127 1e-27
ref|XM_001680952.1| Leishmania major hypothetical protein, conse... 125 5e-27
gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, co... 37 1.8
gb|CP000547.1| Burkholderia mallei NCTC 10247 chromosome II, com... 36 5.3
gb|CP000573.1| Burkholderia pseudomallei 1106a chromosome II, co... 36 5.3
gb|CP000545.1| Burkholderia mallei NCTC 10229 chromosome II, com... 36 5.3
gb|CP000525.1| Burkholderia mallei SAVP1 chromosome II, complete... 36 5.3
gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, co... 36 5.3
gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, comp... 36 5.3
emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromos... 36 5.3
gb|CP000571.1| Burkholderia pseudomallei 668 chromosome II, comp... 35 6.0
ref|XM_001935057.1| Pyrenophora tritici-repentis Pt-1C-BFP conse... 35 6.2
>emb|AM494944.1| Leishmania braziliensis chromosome 7
Length = 586128
Score = 209 bits (531), Expect = 3e-52, Method: Composition-based stats.
Identities = 119/161 (73%), Positives = 119/161 (73%)
Frame = -2
Query: 1 THPILVARHALVGTAEGLTKGRLLLRQRRKHRPRVPTINAVEADGRCELAVRESLHDPVV 60
THPILVARHALVGTAEGLTKGRLLLRQRRKHRPRVPTINAVEADGRCELAVRESLHDPVV
Sbjct: 458120 THPILVARHALVGTAEGLTKGRLLLRQRRKHRPRVPTINAVEADGRCELAVRESLHDPVV 457941
Query: 61 CLDPRDLTPELHWCAAVALRQEWQRTLQRCLLPCXXXXXXXXXXXXIXXXXXXXXXXXXX 120
CLDPRDLTPELHWCAAVALRQEWQRTLQRCLLPC I
Sbjct: 457940 CLDPRDLTPELHWCAAVALRQEWQRTLQRCLLPCREAAAV*REVRRIGNGHGC*WRCGGR 457761
Query: 121 XXXXXXXXXXXXXXXXXKAEWVGKQKRETKTRCTRNDGAPA 161
KAEWVGKQKRETKTRCTRNDGAPA
Sbjct: 457760 RDEREGGRGAR*AKRSGKAEWVGKQKRETKTRCTRNDGAPA 457638
>ref|XM_001562543.1| Leishmania braziliensis MHOM/BR/75/M2904 hypothetical protein,
conserved (LbrM07_V2.0980) partial mRNA
Length = 1008
Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats.
Identities = 94/94 (100%), Positives = 94/94 (100%)
Frame = -1
Query: 1 THPILVARHALVGTAEGLTKGRLLLRQRRKHRPRVPTINAVEADGRCELAVRESLHDPVV 60
THPILVARHALVGTAEGLTKGRLLLRQRRKHRPRVPTINAVEADGRCELAVRESLHDPVV
Sbjct: 333 THPILVARHALVGTAEGLTKGRLLLRQRRKHRPRVPTINAVEADGRCELAVRESLHDPVV 154
Query: 61 CLDPRDLTPELHWCAAVALRQEWQRTLQRCLLPC 94
CLDPRDLTPELHWCAAVALRQEWQRTLQRCLLPC
Sbjct: 153 CLDPRDLTPELHWCAAVALRQEWQRTLQRCLLPC 52
>emb|AM502225.1| Leishmania infantum chromosome 7
Length = 591632
Score = 128 bits (321), Expect = 7e-28, Method: Composition-based stats.
Identities = 67/94 (71%), Positives = 75/94 (79%)
Frame = -2
Query: 1 THPILVARHALVGTAEGLTKGRLLLRQRRKHRPRVPTINAVEADGRCELAVRESLHDPVV 60
TH I VA + LVG AEGL +G LLLRQ R+HRPRV TI+AVEAD R ELAVRESL DPV+
Sbjct: 437719 THHIFVAWYPLVGAAEGLAQGHLLLRQLREHRPRVSTIDAVEADSRRELAVRESLRDPVI 437540
Query: 61 CLDPRDLTPELHWCAAVALRQEWQRTLQRCLLPC 94
CLD DLTP+LH C AVALR+EW+R LQR LL C
Sbjct: 437539 CLDTSDLTPQLHRCTAVALREEWKRALQRRLLSC 437438
>ref|XM_001463271.1| Leishmania infantum hypothetical protein, conserved (LinJ07.0980)
partial mRNA
Length = 1014
Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats.
Identities = 67/94 (71%), Positives = 75/94 (79%)
Frame = -1
Query: 1 THPILVARHALVGTAEGLTKGRLLLRQRRKHRPRVPTINAVEADGRCELAVRESLHDPVV 60
TH I VA + LVG AEGL +G LLLRQ R+HRPRV TI+AVEAD R ELAVRESL DPV+
Sbjct: 333 THHIFVAWYPLVGAAEGLAQGHLLLRQLREHRPRVSTIDAVEADSRRELAVRESLRDPVI 154
Query: 61 CLDPRDLTPELHWCAAVALRQEWQRTLQRCLLPC 94
CLD DLTP+LH C AVALR+EW+R LQR LL C
Sbjct: 153 CLDTSDLTPQLHRCTAVALREEWKRALQRRLLSC 52
>ref|XM_001680952.1| Leishmania major hypothetical protein, conserved (LmjF07.0930)
partial mRNA
Length = 1008
Score = 125 bits (313), Expect = 5e-27, Method: Composition-based stats.
Identities = 66/94 (70%), Positives = 75/94 (79%)
Frame = -1
Query: 1 THPILVARHALVGTAEGLTKGRLLLRQRRKHRPRVPTINAVEADGRCELAVRESLHDPVV 60
TH I VA + LVG AEGL +GRLLLRQ R+HRPR TI+AVEAD R ELAVRESL +PV+
Sbjct: 336 THHIFVAWYPLVGAAEGLAQGRLLLRQLREHRPRASTIDAVEADSRRELAVRESLRNPVI 157
Query: 61 CLDPRDLTPELHWCAAVALRQEWQRTLQRCLLPC 94
CLDP DLTP+LH AVALR+EW+R LQR LL C
Sbjct: 156 CLDPSDLTPQLHRRTAVALREEWERALQRRLLSC 55
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence
Length = 2914771
Score = 37.4 bits (85), Expect = 1.8, Method: Composition-based stats.
Identities = 24/44 (54%), Positives = 26/44 (59%)
Frame = -2
Query: 8 RHALVGTAEGLTKGRLLLRQRRKHRPRVPTINAVEADGRCELAV 51
R V +AEG G L +RR HRPRVP AV ADGR LAV
Sbjct: 2506083 RRRDVVSAEGARDGDGHLYRRRIHRPRVPEPCAVRADGRVRLAV 2505952
>gb|CP000547.1| Burkholderia mallei NCTC 10247 chromosome II, complete sequence
Length = 2352693
Score = 35.8 bits (81), Expect = 5.3, Method: Composition-based stats.
Identities = 23/44 (52%), Positives = 26/44 (59%)
Frame = +3
Query: 8 RHALVGTAEGLTKGRLLLRQRRKHRPRVPTINAVEADGRCELAV 51
R V +AEG G L +RR HRPRVP AV ADGR LA+
Sbjct: 846378 RRRDVVSAEGACDGDGHLYRRRIHRPRVPEPRAVRADGRVRLAL 846509
>gb|CP000573.1| Burkholderia pseudomallei 1106a chromosome II, complete sequence
Length = 3100794
Score = 35.8 bits (81), Expect = 5.3, Method: Composition-based stats.
Identities = 23/44 (52%), Positives = 26/44 (59%)
Frame = +3
Query: 8 RHALVGTAEGLTKGRLLLRQRRKHRPRVPTINAVEADGRCELAV 51
R V +AEG G L +RR HRPRVP AV ADGR LA+
Sbjct: 474549 RRRDVVSAEGACDGDGHLYRRRIHRPRVPEPRAVRADGRVRLAL 474680
>gb|CP000545.1| Burkholderia mallei NCTC 10229 chromosome II, complete sequence
Length = 2284095
Score = 35.8 bits (81), Expect = 5.3, Method: Composition-based stats.
Identities = 23/44 (52%), Positives = 26/44 (59%)
Frame = +3
Query: 8 RHALVGTAEGLTKGRLLLRQRRKHRPRVPTINAVEADGRCELAV 51
R V +AEG G L +RR HRPRVP AV ADGR LA+
Sbjct: 2274174 RRRDVVSAEGACDGDGHLYRRRIHRPRVPEPRAVRADGRVRLAL 2274305
>gb|CP000525.1| Burkholderia mallei SAVP1 chromosome II, complete sequence
Length = 1734922
Score = 35.8 bits (81), Expect = 5.3, Method: Composition-based stats.
Identities = 23/44 (52%), Positives = 26/44 (59%)
Frame = +3
Query: 8 RHALVGTAEGLTKGRLLLRQRRKHRPRVPTINAVEADGRCELAV 51
R V +AEG G L +RR HRPRVP AV ADGR LA+
Sbjct: 1724988 RRRDVVSAEGACDGDGHLYRRRIHRPRVPEPRAVRADGRVRLAL 1725119
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence
Length = 3181762
Score = 35.8 bits (81), Expect = 5.3, Method: Composition-based stats.
Identities = 23/44 (52%), Positives = 26/44 (59%)
Frame = +3
Query: 8 RHALVGTAEGLTKGRLLLRQRRKHRPRVPTINAVEADGRCELAV 51
R V +AEG G L +RR HRPRVP AV ADGR LA+
Sbjct: 2313318 RRRDVVSAEGACDGDGHLYRRRIHRPRVPEPRAVRADGRVRLAL 2313449
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence
Length = 2325379
Score = 35.8 bits (81), Expect = 5.3, Method: Composition-based stats.
Identities = 23/44 (52%), Positives = 26/44 (59%)
Frame = +3
Query: 8 RHALVGTAEGLTKGRLLLRQRRKHRPRVPTINAVEADGRCELAV 51
R V +AEG G L +RR HRPRVP AV ADGR LA+
Sbjct: 876018 RRRDVVSAEGACDGDGHLYRRRIHRPRVPEPRAVRADGRVRLAL 876149
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence
Length = 3173005
Score = 35.8 bits (81), Expect = 5.3, Method: Composition-based stats.
Identities = 23/44 (52%), Positives = 26/44 (59%)
Frame = +2
Query: 8 RHALVGTAEGLTKGRLLLRQRRKHRPRVPTINAVEADGRCELAV 51
R V +AEG G L +RR HRPRVP AV ADGR LA+
Sbjct: 474767 RRRDVVSAEGACDGDGHLYRRRIHRPRVPEPRAVRADGRVRLAL 474898
>gb|CP000571.1| Burkholderia pseudomallei 668 chromosome II, complete sequence
Length = 3127456
Score = 35.4 bits (80), Expect = 6.0, Method: Composition-based stats.
Identities = 23/44 (52%), Positives = 26/44 (59%)
Frame = +1
Query: 8 RHALVGTAEGLTKGRLLLRQRRKHRPRVPTINAVEADGRCELAV 51
R V +AEG G L +RR HRPRVP AV ADGR LA+
Sbjct: 547948 RRRDVVSAEGARDGDGHLYRRRIHRPRVPEPRAVRADGRVRLAL 548079
>ref|XM_001935057.1| Pyrenophora tritici-repentis Pt-1C-BFP conserved hypothetical
protein, mRNA
Length = 2400
Score = 35.4 bits (80), Expect = 6.2, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 28/45 (62%)
Frame = +1
Query: 28 RRKHRPRVPTINAVEADGRCELAVRESLHDPVVCLDPRDLTPELH 72
R KH+ P+++++++ GR E + +L + + C DPRD T LH
Sbjct: 1762 RPKHKNNSPSLSSIDSTGRLERQLFSALGEELACFDPRD-TNTLH 1893
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.325 0.137 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 503568706
Number of extensions: 8498318
Number of successful extensions: 54350
Number of sequences better than 10: 1
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 54311
Number of HSP's successfully gapped: 1
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 15 (7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.0 bits)
S2: 78 (34.7 bits)
Query= gi|154332491|ref|NC_009299.1|:subseq(128008,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 7:[revcomp]
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
emb|AM494944.1| Leishmania braziliensis chromosome 7 209 2e-52
ref|XM_001562543.1| Leishmania braziliensis MHOM/BR/75/M2904 hyp... 176 2e-42
emb|AM502225.1| Leishmania infantum chromosome 7 157 1e-36
ref|XM_001680952.1| Leishmania major hypothetical protein, conse... 156 2e-36
ref|XM_001463271.1| Leishmania infantum hypothetical protein, co... 152 3e-35
ref|XM_841825.1| Trypanosoma brucei TREU927 hypothetical protein... 52 8e-05
gb|AC159407.1| Trypanosoma brucei chromosome 8 clone RPCI93-12O1... 50 4e-04
ref|XM_811178.1| Trypanosoma cruzi strain CL Brener hypothetical... 49 4e-04
ref|XM_808867.1| Trypanosoma cruzi strain CL Brener hypothetical... 48 8e-04
>emb|AM494944.1| Leishmania braziliensis chromosome 7
Length = 586128
Score = 209 bits (533), Expect = 2e-52, Method: Composition-based stats.
Identities = 126/160 (78%), Positives = 126/160 (78%)
Frame = -3
Query: 1 RILYSXLGTPWXGPRRASQRAACSSVSAESIAHVFPPSTLXKLTAGANSPFGKACTTQXC 60
RILYS LGTPW GPRRASQRAACSSVSAESIAHVFPPSTL KLTAGANSPFGKACTTQ C
Sbjct: 458119 RILYS*LGTPW*GPRRASQRAACSSVSAESIAHVFPPSTL*KLTAGANSPFGKACTTQ*C 457940
Query: 61 VLIPVTLPQSCIGVPRXRCDKSGSEHCSAVCSPAVRQLPFSVRYAALATXXXXXXXXXXX 120
VLIPVTLPQSCIGVPR RCDKSGSEHCSAVCSPAVRQLPFSVRYAALAT
Sbjct: 457939 VLIPVTLPQSCIGVPR*RCDKSGSEHCSAVCSPAVRQLPFSVRYAALATDMAADGDAGGG 457760
Query: 121 XXXXXXXXXXXXXXXXXKQNGXESRKGRRRHGAPAMTVHL 160
KQNG ESRKGRRRHGAPAMTVHL
Sbjct: 457759 ETRERGGGGRDEPREAGKQNG*ESRKGRRRHGAPAMTVHL 457640
>ref|XM_001562543.1| Leishmania braziliensis MHOM/BR/75/M2904 hypothetical protein,
conserved (LbrM07_V2.0980) partial mRNA
Length = 1008
Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats.
Identities = 104/109 (95%), Positives = 104/109 (95%)
Frame = -2
Query: 1 RILYSXLGTPWXGPRRASQRAACSSVSAESIAHVFPPSTLXKLTAGANSPFGKACTTQXC 60
RILYS LGTPW GPRRASQRAACSSVSAESIAHVFPPSTL KLTAGANSPFGKACTTQ C
Sbjct: 332 RILYS*LGTPW*GPRRASQRAACSSVSAESIAHVFPPSTL*KLTAGANSPFGKACTTQ*C 153
Query: 61 VLIPVTLPQSCIGVPRXRCDKSGSEHCSAVCSPAVRQLPFSVRYAALAT 109
VLIPVTLPQSCIGVPR RCDKSGSEHCSAVCSPAVRQLPFSVRYAALAT
Sbjct: 152 VLIPVTLPQSCIGVPR*RCDKSGSEHCSAVCSPAVRQLPFSVRYAALAT 6
>emb|AM502225.1| Leishmania infantum chromosome 7
Length = 591632
Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats.
Identities = 87/109 (79%), Positives = 92/109 (84%)
Frame = -3
Query: 1 RILYSXLGTPWXGPRRASQRAACSSVSAESIAHVFPPSTLXKLTAGANSPFGKACTTQXC 60
RI+YS LGTPW GPRRAS RA CSSVS+ESI HVFPPS L KLTAGANSPFGKAC TQ
Sbjct: 437718 RIIYS*LGTPW*GPRRASHRATCSSVSSESIVHVFPPSML*KLTAGANSPFGKACATQ*F 437539
Query: 61 VLIPVTLPQSCIGVPRXRCDKSGSEHCSAVCSPAVRQLPFSVRYAALAT 109
LIPVTLP S IGVPR R ++SGSEHCSAVCSPAV+QLP S RYAALAT
Sbjct: 437538 ALIPVTLPHSFIGVPR*R*ERSGSEHCSAVCSPAVKQLPMSGRYAALAT 437392
>ref|XM_001680952.1| Leishmania major hypothetical protein, conserved (LmjF07.0930)
partial mRNA
Length = 1008
Score = 156 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 89/109 (81%), Positives = 94/109 (86%)
Frame = -2
Query: 1 RILYSXLGTPWXGPRRASQRAACSSVSAESIAHVFPPSTLXKLTAGANSPFGKACTTQXC 60
RI+YS LGTPW GPRRAS RAACSSVS+ESI HV PPS L KLTAGANSPFGKAC TQ
Sbjct: 335 RIIYS*LGTPW*GPRRASHRAACSSVSSESIVHVLPPSML*KLTAGANSPFGKACATQ*F 156
Query: 61 VLIPVTLPQSCIGVPRXRCDKSGSEHCSAVCSPAVRQLPFSVRYAALAT 109
LIPVTLP SCIGVPR RC++SGSEHCSAVCSPAV+QLP S RYAALAT
Sbjct: 155 ALIPVTLPHSCIGVPR*RCERSGSEHCSAVCSPAVKQLPMSGRYAALAT 9
>ref|XM_001463271.1| Leishmania infantum hypothetical protein, conserved (LinJ07.0980)
partial mRNA
Length = 1014
Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats.
Identities = 87/109 (79%), Positives = 92/109 (84%)
Frame = -2
Query: 1 RILYSXLGTPWXGPRRASQRAACSSVSAESIAHVFPPSTLXKLTAGANSPFGKACTTQXC 60
RI+YS LGTPW GPRRAS RA CSSVS+ESI HVFPPS L KLTAGANSPFGKAC TQ
Sbjct: 332 RIIYS*LGTPW*GPRRASHRATCSSVSSESIVHVFPPSML*KLTAGANSPFGKACATQ*F 153
Query: 61 VLIPVTLPQSCIGVPRXRCDKSGSEHCSAVCSPAVRQLPFSVRYAALAT 109
LIPVTLP S IGVPR R ++SGSEHCSAVCSPAV+QLP S RYAALAT
Sbjct: 152 ALIPVTLPHSFIGVPR*R*ERSGSEHCSAVCSPAVKQLPMSGRYAALAT 6
>ref|XM_841825.1| Trypanosoma brucei TREU927 hypothetical protein, conserved
(Tb927.8.810) partial mRNA
Length = 1002
Score = 51.6 bits (122), Expect = 8e-05, Method: Composition-based stats.
Identities = 38/92 (41%), Positives = 45/92 (48%)
Frame = -2
Query: 8 GTPWXGPRRASQRAACSSVSAESIAHVFPPSTLXKLTAGANSPFGKACTTQXCVLIPVTL 67
G+P PR SQ+A SS + H PPSTL K N PFG C T+ PVT
Sbjct: 314 GSPM*TPRS*SQKATWSSERVSNTRHDVPPSTLKKE*RAPNKPFGITCATR*SPRTPVTF 135
Query: 68 PQSCIGVPRXRCDKSGSEHCSAVCSPAVRQLP 99
PQ+C G R +SG E C A S + LP
Sbjct: 134 PQNCTGRLYLRA-RSGREDCRAARSAVLNALP 42
>gb|AC159407.1| Trypanosoma brucei chromosome 8 clone RPCI93-12O16, complete sequence
Length = 161249
Score = 49.7 bits (117), Expect = 4e-04, Method: Composition-based stats.
Identities = 38/92 (41%), Positives = 45/92 (48%)
Frame = +3
Query: 8 GTPWXGPRRASQRAACSSVSAESIAHVFPPSTLXKLTAGANSPFGKACTTQXCVLIPVTL 67
G+P PR SQ+A SS + H PPSTL K N PFG C T+ PVT
Sbjct: 93876 GSPM*TPRS*SQKATWSSERVSNTRHDVPPSTLKKE*RAPNKPFGITCATR*SPRTPVTF 94055
Query: 68 PQSCIGVPRXRCDKSGSEHCSAVCSPAVRQLP 99
PQ+C G R +SG E C A S + LP
Sbjct: 94056 PQNCTGRLYLRA-RSGREDCRAARSAVLNALP 94148
>ref|XM_811178.1| Trypanosoma cruzi strain CL Brener hypothetical protein partial
mRNA
Length = 1008
Score = 49.3 bits (116), Expect = 4e-04, Method: Composition-based stats.
Identities = 42/107 (39%), Positives = 54/107 (50%)
Frame = -2
Query: 1 RILYSXLGTPWXGPRRASQRAACSSVSAESIAHVFPPSTLXKLTAGANSPFGKACTTQXC 60
R LY +G+P PR SQ A SSV + H PPSTL KL +P G AC T+
Sbjct: 335 RTLYINVGSPMYTPRS*SQNATSSSVRGSNRRHEVPPSTLKKLKRLPKTPSGTACVTR*S 156
Query: 61 VLIPVTLPQSCIGVPRXRCDKSGSEHCSAVCSPAVRQLPFSVRYAAL 107
L P LPQ GV ++SG + C+A S +R P + +AL
Sbjct: 155 PL*PRILPQKRTGVSY-LAERSGIDDCNAARSAVLRARPTNRSPSAL 18
>ref|XM_808867.1| Trypanosoma cruzi strain CL Brener hypothetical protein partial
mRNA
Length = 1008
Score = 48.1 bits (113), Expect = 8e-04, Method: Composition-based stats.
Identities = 40/99 (40%), Positives = 50/99 (50%)
Frame = -2
Query: 1 RILYSXLGTPWXGPRRASQRAACSSVSAESIAHVFPPSTLXKLTAGANSPFGKACTTQXC 60
R LY +G+P PR SQ A SSV + H PPSTL KL +P G AC T+
Sbjct: 335 RTLYINVGSPMYTPRS*SQNATSSSVRGSNRRHEVPPSTLKKLKRLPKTPSGTACVTR*S 156
Query: 61 VLIPVTLPQSCIGVPRXRCDKSGSEHCSAVCSPAVRQLP 99
L P LPQ GV ++SG + C+A S +R P
Sbjct: 155 PL*PRILPQKRTGVSY-LAERSGIDDCNAARSAVLRARP 42
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.345 0.146 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 522163938
Number of extensions: 7772908
Number of successful extensions: 95194
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 95144
Number of HSP's successfully gapped: 0
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 15 (7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (19.2 bits)
S2: 78 (34.7 bits)
Query= gi|154332491|ref|NC_009299.1|:subseq(128008,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 7:[revcomp]
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
emb|AM494944.1| Leishmania braziliensis chromosome 7 137 1e-30
ref|XM_001562543.1| Leishmania braziliensis MHOM/BR/75/M2904 hyp... 99 6e-19
>emb|AM494944.1| Leishmania braziliensis chromosome 7
Length = 586128
Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats.
Identities = 101/155 (65%), Positives = 101/155 (65%)
Frame = -1
Query: 1 ASYTRSSARLGRDRGGPHKGXXXXXXXXXXXXTCSHHQXXXXXXXXXXXXSGKLARXXXX 60
ASYTRSSARLGRDRGGPHKG TCSHHQ SGKLAR
Sbjct: 458118 ASYTRSSARLGRDRGGPHKGPPAPPSAQKASPTCSHHQRCRS*RPVRTRRSGKLARPSSV 457939
Query: 61 XXXXXXXXRAALVCRGSVATRVAANTAALSAPLPUGSCRLAUGTPHWQRTWLLXXXXXXX 120
RAALVCRGSVATRVAANTAALSAPLP GSCRLA GTPHWQRTWLL
Sbjct: 457938 S*SP*PYPRAALVCRGSVATRVAANTAALSAPLP*GSCRLA*GTPHWQRTWLLMEMRGEE 457759
Query: 121 XXXXXXXXXAMSQEKRESRMGRKAEKGDEDTVHPQ 155
AMSQEKRESRMGRKAEKGDEDTVHPQ
Sbjct: 457758 RRERGGEGGAMSQEKRESRMGRKAEKGDEDTVHPQ 457654
>ref|XM_001562543.1| Leishmania braziliensis MHOM/BR/75/M2904 hypothetical protein,
conserved (LbrM07_V2.0980) partial mRNA
Length = 1008
Score = 98.6 bits (244), Expect = 6e-19, Method: Composition-based stats.
Identities = 72/110 (65%), Positives = 72/110 (65%)
Frame = -3
Query: 1 ASYTRSSARLGRDRGGPHKGXXXXXXXXXXXXTCSHHQXXXXXXXXXXXXSGKLARXXXX 60
ASYTRSSARLGRDRGGPHKG TCSHHQ SGKLAR
Sbjct: 331 ASYTRSSARLGRDRGGPHKGPPAPPSAQKASPTCSHHQRCRS*RPVRTRRSGKLARPSSV 152
Query: 61 XXXXXXXXRAALVCRGSVATRVAANTAALSAPLPUGSCRLAUGTPHWQRT 110
RAALVCRGSVATRVAANTAALSAPLP GSCRLA GTPHWQRT
Sbjct: 151 S*SP*PYPRAALVCRGSVATRVAANTAALSAPLP*GSCRLA*GTPHWQRT 2
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.316 0.126 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 337110448
Number of extensions: 3154540
Number of successful extensions: 17392
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 17392
Number of HSP's successfully gapped: 0
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 16 (7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 78 (34.7 bits)
Query= gi|154332491|ref|NC_009299.1|:subseq(144141,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 7
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
ref|XM_001562479.1| Leishmania braziliensis MHOM/BR/75/M2904 hyp... 161 5e-38
emb|AM494944.1| Leishmania braziliensis chromosome 7 161 5e-38
ref|XM_001680884.1| Leishmania major hypothetical protein, conse... 59 4e-07
ref|XM_001463204.1| Leishmania infantum hypothetical protein, co... 59 5e-07
emb|AM502225.1| Leishmania infantum chromosome 7 59 5e-07
>ref|XM_001562479.1| Leishmania braziliensis MHOM/BR/75/M2904 hypothetical protein,
conserved (LbrM07_V2.0330) partial mRNA
Length = 3147
Score = 161 bits (408), Expect = 5e-38, Method: Composition-based stats.
Identities = 103/149 (69%), Positives = 103/149 (69%)
Frame = -1
Query: 18 LSGASVRRGTUEVARNQCXXXXXLTMDRRACPDVATTLRGDGGGRMAAGYRLCSWXXXXX 77
LSGASVRRGT EVARNQC LTMDRRACPDVATTLRGDGGGRMAAGYRLCSW
Sbjct: 2424 LSGASVRRGT*EVARNQCAAAAALTMDRRACPDVATTLRGDGGGRMAAGYRLCSWSRRGR 2245
Query: 78 XXXXXXXXXXXVECLHTATRRNVMSITHSAAHSVLAVIVVTRXTGUAALEQVGDXXXXXX 137
VECLHTATRRNVMSITHSAAHSVLAVIVVTR TG AALEQVGD
Sbjct: 2244 RSGSGASRGNRVECLHTATRRNVMSITHSAAHSVLAVIVVTR*TG*AALEQVGDVGHANA 2065
Query: 138 XXXXXXXXXXXXXXXMHPFVRUVASLISG 166
MHPFVR VASLISG
Sbjct: 2064 *VAVRGRREVRIRGVMHPFVR*VASLISG 1978
>emb|AM494944.1| Leishmania braziliensis chromosome 7
Length = 586128
Score = 161 bits (408), Expect = 5e-38, Method: Composition-based stats.
Identities = 103/149 (69%), Positives = 103/149 (69%)
Frame = +1
Query: 18 LSGASVRRGTUEVARNQCXXXXXLTMDRRACPDVATTLRGDGGGRMAAGYRLCSWXXXXX 77
LSGASVRRGT EVARNQC LTMDRRACPDVATTLRGDGGGRMAAGYRLCSW
Sbjct: 144193 LSGASVRRGT*EVARNQCAAAAALTMDRRACPDVATTLRGDGGGRMAAGYRLCSWSRRGR 144372
Query: 78 XXXXXXXXXXXVECLHTATRRNVMSITHSAAHSVLAVIVVTRXTGUAALEQVGDXXXXXX 137
VECLHTATRRNVMSITHSAAHSVLAVIVVTR TG AALEQVGD
Sbjct: 144373 RSGSGASRGNRVECLHTATRRNVMSITHSAAHSVLAVIVVTR*TG*AALEQVGDVGHANA 144552
Query: 138 XXXXXXXXXXXXXXXMHPFVRUVASLISG 166
MHPFVR VASLISG
Sbjct: 144553 *VAVRGRREVRIRGVMHPFVR*VASLISG 144639
>ref|XM_001680884.1| Leishmania major hypothetical protein, conserved (LmjF07.0320)
partial mRNA
Length = 3093
Score = 59.3 bits (142), Expect = 4e-07, Method: Composition-based stats.
Identities = 48/114 (42%), Positives = 59/114 (51%)
Frame = -1
Query: 18 LSGASVRRGTUEVARNQCXXXXXLTMDRRACPDVATTLRGDGGGRMAAGYRLCSWXXXXX 77
LSGASV RG + A ++ LT++RR C D A T+ GDGG MAAG R W
Sbjct: 2379 LSGASVCRGAGDAAYSEYAATASLTINRRTCLD-AVTILGDGGAWMAAGQRCRRWTHRSG 2203
Query: 78 XXXXXXXXXXXVECLHTATRRNVMSITHSAAHSVLAVIVVTRXTGUAALEQVGD 131
CL ATR+ V+++ H AH V+ V VV R G AA QVGD
Sbjct: 2202 -------------CLLVATRKGVVTVLHKPAHGVVGVAVVARQAGRAAPPQVGD 2080
>ref|XM_001463204.1| Leishmania infantum hypothetical protein, conserved (LinJ07.0300)
partial mRNA
Length = 3138
Score = 58.9 bits (141), Expect = 5e-07, Method: Composition-based stats.
Identities = 49/114 (42%), Positives = 59/114 (51%)
Frame = -1
Query: 18 LSGASVRRGTUEVARNQCXXXXXLTMDRRACPDVATTLRGDGGGRMAAGYRLCSWXXXXX 77
LSGASV RG +VA ++ T++RR D TTL GDGGGRMA G R W
Sbjct: 2424 LSGASVCRGAGDVACHEYAATASPTINRRTRLDAVTTLGGDGGGRMATGKRRRRWAHRGG 2245
Query: 78 XXXXXXXXXXXVECLHTATRRNVMSITHSAAHSVLAVIVVTRXTGUAALEQVGD 131
L ATR+ V+++ H AH V+ V VV R G AAL QVGD
Sbjct: 2244 CERSGVKRSRTGIRLLVATRKGVVTVLHKPAHGVVGVAVVARQAGRAALPQVGD 2083
>emb|AM502225.1| Leishmania infantum chromosome 7
Length = 591632
Score = 58.9 bits (141), Expect = 5e-07, Method: Composition-based stats.
Identities = 49/114 (42%), Positives = 59/114 (51%)
Frame = +3
Query: 18 LSGASVRRGTUEVARNQCXXXXXLTMDRRACPDVATTLRGDGGGRMAAGYRLCSWXXXXX 77
LSGASV RG +VA ++ T++RR D TTL GDGGGRMA G R W
Sbjct: 139872 LSGASVCRGAGDVACHEYAATASPTINRRTRLDAVTTLGGDGGGRMATGKRRRRWAHRGG 140051
Query: 78 XXXXXXXXXXXVECLHTATRRNVMSITHSAAHSVLAVIVVTRXTGUAALEQVGD 131
L ATR+ V+++ H AH V+ V VV R G AAL QVGD
Sbjct: 140052 CERSGVKRSRTGIRLLVATRKGVVTVLHKPAHGVVGVAVVARQAGRAALPQVGD 140213
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.330 0.136 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 255279597
Number of extensions: 2206801
Number of successful extensions: 19374
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 19353
Number of HSP's successfully gapped: 0
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 15 (7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.0 bits)
S2: 78 (34.7 bits)
Query= gi|154332491|ref|NC_009299.1|:subseq(144141,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 7
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
ref|XM_001562479.1| Leishmania braziliensis MHOM/BR/75/M2904 hyp... 161 6e-38
emb|AM494944.1| Leishmania braziliensis chromosome 7 161 6e-38
ref|XM_001463204.1| Leishmania infantum hypothetical protein, co... 86 3e-15
emb|AM502225.1| Leishmania infantum chromosome 7 86 3e-15
ref|XM_001680884.1| Leishmania major hypothetical protein, conse... 71 1e-10
>ref|XM_001562479.1| Leishmania braziliensis MHOM/BR/75/M2904 hypothetical protein,
conserved (LbrM07_V2.0330) partial mRNA
Length = 3147
Score = 161 bits (408), Expect = 6e-38, Method: Composition-based stats.
Identities = 118/154 (76%), Positives = 118/154 (76%)
Frame = -2
Query: 1 LVVGSAEAEVTSGVTRGSLAPASVAALERWLGTSALLLPLUQWXXXXXXXXXXXXEVMEA 60
LVVGSAEAEVTSGVTRGSLAPASVAALERWLGTSALLLPL QW EVMEA
Sbjct: 2474 LVVGSAEAEVTSGVTRGSLAPASVAALERWLGTSALLLPL*QWTVVPVPTSPPPSEVMEA 2295
Query: 61 GGWLPXXXXXXXXXXXXXXXXXXXXXXESNASTRLHAETSUASPIAPLIASSLSLWSPAR 120
GGWLP ESNASTRLHAETS ASPIAPLIASSLSLWSPAR
Sbjct: 2294 GGWLPATDSAVGAAEADAAVVAPAGVTESNASTRLHAETS*ASPIAPLIASSLSLWSPAR 2115
Query: 121 LGEPLSSRWEMLATLMRELLCADEEKSASEGSCI 154
LGEPLSSRWEMLATLMRELLCADEEKSASEGSCI
Sbjct: 2114 LGEPLSSRWEMLATLMRELLCADEEKSASEGSCI 2013
>emb|AM494944.1| Leishmania braziliensis chromosome 7
Length = 586128
Score = 161 bits (408), Expect = 6e-38, Method: Composition-based stats.
Identities = 118/154 (76%), Positives = 118/154 (76%)
Frame = +2
Query: 1 LVVGSAEAEVTSGVTRGSLAPASVAALERWLGTSALLLPLUQWXXXXXXXXXXXXEVMEA 60
LVVGSAEAEVTSGVTRGSLAPASVAALERWLGTSALLLPL QW EVMEA
Sbjct: 144143 LVVGSAEAEVTSGVTRGSLAPASVAALERWLGTSALLLPL*QWTVVPVPTSPPPSEVMEA 144322
Query: 61 GGWLPXXXXXXXXXXXXXXXXXXXXXXESNASTRLHAETSUASPIAPLIASSLSLWSPAR 120
GGWLP ESNASTRLHAETS ASPIAPLIASSLSLWSPAR
Sbjct: 144323 GGWLPATDSAVGAAEADAAVVAPAGVTESNASTRLHAETS*ASPIAPLIASSLSLWSPAR 144502
Query: 121 LGEPLSSRWEMLATLMRELLCADEEKSASEGSCI 154
LGEPLSSRWEMLATLMRELLCADEEKSASEGSCI
Sbjct: 144503 LGEPLSSRWEMLATLMRELLCADEEKSASEGSCI 144604
>ref|XM_001463204.1| Leishmania infantum hypothetical protein, conserved (LinJ07.0300)
partial mRNA
Length = 3138
Score = 86.3 bits (212), Expect = 3e-15, Method: Composition-based stats.
Identities = 76/147 (51%), Positives = 84/147 (57%)
Frame = -2
Query: 2 VVGSAEAEVTSGVTRGSLAPASVAALERWLGTSALLLPLUQWXXXXXXXXXXXXEVMEAG 61
+VG AEAE T+ V S APAS AALE L TS L LPL + E EAG
Sbjct: 2471 LVGRAEAEQTTWVFSTSPAPASAAALEM*LATSMLPLPLRR*IAVRASMPSPLSEATEAG 2292
Query: 62 GWLPXXXXXXXXXXXXXXXXXXXXXXESNASTRLHAETSUASPIAPLIASSLSLWSPARL 121
GWLP ++ AS+ LHA+ S S I PL+ASS SLWSPARL
Sbjct: 2291 GWLPASDAADGPTEADARGAASSGAVQAYASSWLHAKAS*PSSINPLMASSASLWSPARL 2112
Query: 122 GEPLSSRWEMLATLMRELLCADEEKSA 148
EPLS RWEML TLMRELL ADEEKSA
Sbjct: 2111 AEPLSRRWEMLVTLMRELLFADEEKSA 2031
>emb|AM502225.1| Leishmania infantum chromosome 7
Length = 591632
Score = 86.3 bits (212), Expect = 3e-15, Method: Composition-based stats.
Identities = 76/147 (51%), Positives = 84/147 (57%)
Frame = +1
Query: 2 VVGSAEAEVTSGVTRGSLAPASVAALERWLGTSALLLPLUQWXXXXXXXXXXXXEVMEAG 61
+VG AEAE T+ V S APAS AALE L TS L LPL + E EAG
Sbjct: 139825 LVGRAEAEQTTWVFSTSPAPASAAALEM*LATSMLPLPLRR*IAVRASMPSPLSEATEAG 140004
Query: 62 GWLPXXXXXXXXXXXXXXXXXXXXXXESNASTRLHAETSUASPIAPLIASSLSLWSPARL 121
GWLP ++ AS+ LHA+ S S I PL+ASS SLWSPARL
Sbjct: 140005 GWLPASDAADGPTEADARGAASSGAVQAYASSWLHAKAS*PSSINPLMASSASLWSPARL 140184
Query: 122 GEPLSSRWEMLATLMRELLCADEEKSA 148
EPLS RWEML TLMRELL ADEEKSA
Sbjct: 140185 AEPLSRRWEMLVTLMRELLFADEEKSA 140265
>ref|XM_001680884.1| Leishmania major hypothetical protein, conserved (LmjF07.0320)
partial mRNA
Length = 3093
Score = 70.9 bits (172), Expect = 1e-10, Method: Composition-based stats.
Identities = 75/153 (49%), Positives = 84/153 (54%)
Frame = -2
Query: 2 VVGSAEAEVTSGVTRGSLAPASVAALERWLGTSALLLPLUQWXXXXXXXXXXXXEVMEAG 61
+VGSAE E T+ V S APAS AALE L S L LPL + V EA
Sbjct: 2426 LVGSAEPEQTTWVFSTSPAPASAAALEMQLTASMLPLPL*R*IDVHASMPSPFS-VTEAR 2250
Query: 62 GWLPXXXXXXXXXXXXXXXXXXXXXXESNASTRLHAETSUASPIAPLIASSLSLWSPARL 121
GWLP E++AS+ LHA+ S S I PL+ASS SLWSPARL
Sbjct: 2249 GWLPASDAADGPT-------------EADASSWLHAKAS*PSSINPLMASSASLWSPARL 2109
Query: 122 GEPLSSRWEMLATLMRELLCADEEKSASEGSCI 154
EPL RWEML TLMRELL ADEEKSA S +
Sbjct: 2108 AEPLPRRWEMLVTLMRELLSADEEKSACNASSM 2010
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.311 0.124 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 387232470
Number of extensions: 4373438
Number of successful extensions: 17215
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 17214
Number of HSP's successfully gapped: 0
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 16 (7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (20.8 bits)
S2: 78 (34.7 bits)
Query= gi|154332491|ref|NC_009299.1|:subseq(144141,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 7
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
ref|XM_001562479.1| Leishmania braziliensis MHOM/BR/75/M2904 hyp... 130 2e-28
emb|AM494944.1| Leishmania braziliensis chromosome 7 130 2e-28
ref|XM_001463204.1| Leishmania infantum hypothetical protein, co... 47 0.002
emb|AM502225.1| Leishmania infantum chromosome 7 47 0.002
ref|XM_001680884.1| Leishmania major hypothetical protein, conse... 41 0.13
>ref|XM_001562479.1| Leishmania braziliensis MHOM/BR/75/M2904 hypothetical protein,
conserved (LbrM07_V2.0330) partial mRNA
Length = 3147
Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats.
Identities = 95/144 (65%), Positives = 95/144 (65%)
Frame = -3
Query: 23 PSRHLRGGXEPVRCCCRSDNGPSCLSXXXXXXXXXXXXADGCRLPTLQLEXXXXXXXXXX 82
PSRHLRGG EPVRCCCRSDNGPSCLS ADGCRLPTLQLE
Sbjct: 2407 PSRHLRGG*EPVRCCCRSDNGPSCLSRRRHHPQR*WRRADGCRLPTLQLEPQRQTQR*WR 2228
Query: 83 XXXXXSRMPPHGYTQKXXXXXXXXXXXXXXXXXXXXLDWVSRSRAGGRCWPRXCVSCCAR 142
SRMPPHGYTQK LDWVSRSRAGGRCWPR CVSCCAR
Sbjct: 2227 QPG*PSRMPPHGYTQKRHEHHP*RRS*RPRCHCGHPLDWVSRSRAGGRCWPR*CVSCCAR 2048
Query: 143 TKRSPHPRGHASLRPLSRQPYQRR 166
TKRSPHPRGHASLRPLSRQPYQRR
Sbjct: 2047 TKRSPHPRGHASLRPLSRQPYQRR 1976
>emb|AM494944.1| Leishmania braziliensis chromosome 7
Length = 586128
Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats.
Identities = 95/144 (65%), Positives = 95/144 (65%)
Frame = +3
Query: 23 PSRHLRGGXEPVRCCCRSDNGPSCLSXXXXXXXXXXXXADGCRLPTLQLEXXXXXXXXXX 82
PSRHLRGG EPVRCCCRSDNGPSCLS ADGCRLPTLQLE
Sbjct: 144210 PSRHLRGG*EPVRCCCRSDNGPSCLSRRRHHPQR*WRRADGCRLPTLQLEPQRQTQR*WR 144389
Query: 83 XXXXXSRMPPHGYTQKXXXXXXXXXXXXXXXXXXXXLDWVSRSRAGGRCWPRXCVSCCAR 142
SRMPPHGYTQK LDWVSRSRAGGRCWPR CVSCCAR
Sbjct: 144390 QPG*PSRMPPHGYTQKRHEHHP*RRS*RPRCHCGHPLDWVSRSRAGGRCWPR*CVSCCAR 144569
Query: 143 TKRSPHPRGHASLRPLSRQPYQRR 166
TKRSPHPRGHASLRPLSRQPYQRR
Sbjct: 144570 TKRSPHPRGHASLRPLSRQPYQRR 144641
>ref|XM_001463204.1| Leishmania infantum hypothetical protein, conserved (LinJ07.0300)
partial mRNA
Length = 3138
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 43/132 (32%), Positives = 51/132 (38%)
Frame = -3
Query: 34 VRCCCRSDNGPSCLSXXXXXXXXXXXXADGCRLPTLQLEXXXXXXXXXXXXXXXSRMPPH 93
V C C SD+ ADG R T Q+ PP
Sbjct: 2374 VCCHCLSDDKSPYAPRCRHHSRRRRRRADGYRQATPQMGPQRRMREERRQAEPYRHTPPR 2195
Query: 94 GYTQKXXXXXXXXXXXXXXXXXXXXLDWVSRSRAGGRCWPRXCVSCCARTKRSPHPRGHA 153
GYTQ+ W SRS AGGRCW R C SCC+RTKR+ H HA
Sbjct: 2194 GYTQRRRDRPP*TRSWRRRRRCGRPPGWPSRSPAGGRCWSR*CGSCCSRTKRNRHAACHA 2015
Query: 154 SLRPLSRQPYQR 165
R + +PY+R
Sbjct: 2014 CRRLVR*KPYRR 1979
>emb|AM502225.1| Leishmania infantum chromosome 7
Length = 591632
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 43/132 (32%), Positives = 51/132 (38%)
Frame = +2
Query: 34 VRCCCRSDNGPSCLSXXXXXXXXXXXXADGCRLPTLQLEXXXXXXXXXXXXXXXSRMPPH 93
V C C SD+ ADG R T Q+ PP
Sbjct: 139922 VCCHCLSDDKSPYAPRCRHHSRRRRRRADGYRQATPQMGPQRRMREERRQAEPYRHTPPR 140101
Query: 94 GYTQKXXXXXXXXXXXXXXXXXXXXLDWVSRSRAGGRCWPRXCVSCCARTKRSPHPRGHA 153
GYTQ+ W SRS AGGRCW R C SCC+RTKR+ H HA
Sbjct: 140102 GYTQRRRDRPP*TRSWRRRRRCGRPPGWPSRSPAGGRCWSR*CGSCCSRTKRNRHAACHA 140281
Query: 154 SLRPLSRQPYQR 165
R + +PY+R
Sbjct: 140282 CRRLVR*KPYRR 140317
>ref|XM_001680884.1| Leishmania major hypothetical protein, conserved (LmjF07.0320)
partial mRNA
Length = 3093
Score = 40.8 bits (94), Expect = 0.13, Method: Composition-based stats.
Identities = 27/60 (45%), Positives = 30/60 (50%)
Frame = -3
Query: 89 RMPPHGYTQKXXXXXXXXXXXXXXXXXXXXLDWVSRSRAGGRCWPRXCVSCCARTKRSPH 148
RMPP GYTQ+ W SRS AGGRCW R C SCC +TKR+ H
Sbjct: 2206 RMPPRGYTQRRRDRPP*TRSWRRRRRCGRPPGWPSRSPAGGRCWSR*CASCCPQTKRNRH 2027
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.334 0.144 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 530084251
Number of extensions: 7255015
Number of successful extensions: 85503
Number of sequences better than 10: 2
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 85454
Number of HSP's successfully gapped: 2
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 15 (7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (19.6 bits)
S2: 78 (34.7 bits)
Query= gi|154332491|ref|NC_009299.1|:subseq(186214,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 7
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
ref|XM_001562486.1| Leishmania braziliensis MHOM/BR/75/M2904 hyp... 248 6e-64
emb|AM494944.1| Leishmania braziliensis chromosome 7 247 1e-63
ref|XM_001463184.1| Leishmania infantum hypothetical protein, co... 102 3e-20
emb|AM502225.1| Leishmania infantum chromosome 7 102 3e-20
ref|XM_001680891.1| Leishmania major hypothetical protein, conse... 101 8e-20
>ref|XM_001562486.1| Leishmania braziliensis MHOM/BR/75/M2904 hypothetical protein,
conserved (LbrM07_V2.0400) partial mRNA
Length = 10617
Score = 248 bits (632), Expect = 6e-64, Method: Composition-based stats.
Identities = 150/166 (90%), Positives = 150/166 (90%)
Frame = -3
Query: 1 FENGRWGCAXTRVDSVNAQPCPTTRRQRMVAVSXXXXXXXXXXLFAKTKMHRCCTTAPQH 60
FENGRWGCA TRVDSVNAQPCPTTRRQRMVAVS LFAKTKMHRCCTTAPQH
Sbjct: 589 FENGRWGCA*TRVDSVNAQPCPTTRRQRMVAVSRRCPRRCCPPLFAKTKMHRCCTTAPQH 410
Query: 61 HRTQTETLPLSWRQQRAACHQXSNTPTLHTRATPKLAMYERAFLACSLLLVLRSWWQPLR 120
HRTQTETLPLSWRQQRAACHQ SNTPTLHTRATPKLAMYERAFLACSLLLVLRSWWQPLR
Sbjct: 409 HRTQTETLPLSWRQQRAACHQ*SNTPTLHTRATPKLAMYERAFLACSLLLVLRSWWQPLR 230
Query: 121 XLWSQYUTSHLQPLPPSHQTESHFALVLRRSSAATVCFLPUUGLCR 166
LWSQY TSHLQPLPPSHQTESHFALVLRRSSAATVCFLP GLCR
Sbjct: 229 *LWSQY*TSHLQPLPPSHQTESHFALVLRRSSAATVCFLP**GLCR 92
>emb|AM494944.1| Leishmania braziliensis chromosome 7
Length = 586128
Score = 247 bits (630), Expect = 1e-63, Method: Composition-based stats.
Identities = 150/166 (90%), Positives = 150/166 (90%)
Frame = +2
Query: 1 FENGRWGCAXTRVDSVNAQPCPTTRRQRMVAVSXXXXXXXXXXLFAKTKMHRCCTTAPQH 60
FENGRWGCA TRVDSVNAQPCPTTRRQRMVAVS LFAKTKMHRCCTTAPQH
Sbjct: 186215 FENGRWGCA*TRVDSVNAQPCPTTRRQRMVAVSRRCPRRCCPPLFAKTKMHRCCTTAPQH 186394
Query: 61 HRTQTETLPLSWRQQRAACHQXSNTPTLHTRATPKLAMYERAFLACSLLLVLRSWWQPLR 120
HRTQTETLPLSWRQQRAACHQ SNTPTLHTRATPKLAMYERAFLACSLLLVLRSWWQPLR
Sbjct: 186395 HRTQTETLPLSWRQQRAACHQ*SNTPTLHTRATPKLAMYERAFLACSLLLVLRSWWQPLR 186574
Query: 121 XLWSQYUTSHLQPLPPSHQTESHFALVLRRSSAATVCFLPUUGLCR 166
LWSQY TSHLQPLPPSHQTESHFALVLRRSSAATVCFLP GLCR
Sbjct: 186575 *LWSQY*TSHLQPLPPSHQTESHFALVLRRSSAATVCFLP**GLCR 186712
>ref|XM_001463184.1| Leishmania infantum hypothetical protein, conserved (LinJ07.0090)
partial mRNA
Length = 11271
Score = 102 bits (255), Expect = 3e-20, Method: Composition-based stats.
Identities = 80/156 (51%), Positives = 95/156 (60%), Gaps = 2/156 (1%)
Frame = -3
Query: 13 VDSVNAQPCPTTRRQRMVAVSXXXXXXXXXXLFAKTKMHRCCTTAPQHHRTQTETLPLSW 72
+D +N PCP TRRQR VS LFAKTKMH C TA +HHRTQT+ PLSW
Sbjct: 1015 MDLLNFHPCPATRRQRTAVVSRCRAQCSRPLLFAKTKMHGCRATAARHHRTQTKPRPLSW 836
Query: 73 RQQRAACHQXSNTPTLHTRATPKLAMYERAFLACSLLLVLRSWWQPLRXLWSQYUTSHLQ 132
+QRA H+ + T T T ATP+ AM E+ L C L L+ SWWQ LR L ++Y L+
Sbjct: 835 LRQRARHHR*NGTQTQRTPATPRPAMPEQTRLLCRLSLLSTSWWQRLR*LGARYSPPSLR 656
Query: 133 PLPPS--HQTESHFALVLRRSSAATVCFLPUUGLCR 166
LPPS +T +FAL RSSAA VCFLP G CR
Sbjct: 655 -LPPSALRRTVGNFALAPHRSSAAPVCFLP**GRCR 551
>emb|AM502225.1| Leishmania infantum chromosome 7
Length = 591632
Score = 102 bits (255), Expect = 3e-20, Method: Composition-based stats.
Identities = 80/156 (51%), Positives = 95/156 (60%), Gaps = 2/156 (1%)
Frame = -3
Query: 13 VDSVNAQPCPTTRRQRMVAVSXXXXXXXXXXLFAKTKMHRCCTTAPQHHRTQTETLPLSW 72
+D +N PCP TRRQR VS LFAKTKMH C TA +HHRTQT+ PLSW
Sbjct: 33246 MDLLNFHPCPATRRQRTAVVSRCRAQCSRPLLFAKTKMHGCRATAARHHRTQTKPRPLSW 33067
Query: 73 RQQRAACHQXSNTPTLHTRATPKLAMYERAFLACSLLLVLRSWWQPLRXLWSQYUTSHLQ 132
+QRA H+ + T T T ATP+ AM E+ L C L L+ SWWQ LR L ++Y L+
Sbjct: 33066 LRQRARHHR*NGTQTQRTPATPRPAMPEQTRLLCRLSLLSTSWWQRLR*LGARYSPPSLR 32887
Query: 133 PLPPS--HQTESHFALVLRRSSAATVCFLPUUGLCR 166
LPPS +T +FAL RSSAA VCFLP G CR
Sbjct: 32886 -LPPSALRRTVGNFALAPHRSSAAPVCFLP**GRCR 32782
>ref|XM_001680891.1| Leishmania major hypothetical protein, conserved (LmjF07.0380)
partial mRNA
Length = 10779
Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats.
Identities = 73/155 (47%), Positives = 91/155 (58%), Gaps = 1/155 (0%)
Frame = -3
Query: 13 VDSVNAQPCPTTRRQRMVAVSXXXXXXXXXXLFAKTKMHRCCTTAPQHHRTQTETLPLSW 72
+D +++QPCP TRRQR VS L AK KM C TA +HHR QT+T PLSW
Sbjct: 568 IDLLSSQPCPATRRQRTAVVSRCRAQRW*PLLSAKPKMRGCRATAARHHRAQTKTRPLSW 389
Query: 73 RQQRAACHQXSNTPTLHTRATPKLAMYERAFLACSLLLVLRSWWQPLRXLWSQYUTSHLQ 132
+QRA H+ + T T TR TP+ AM E+ C L L+ WWQ LR L ++Y L+
Sbjct: 388 LRQRARHHR*NGTQTQRTRVTPRPAMPEQTRPVCRLSLLSTPWWQRLR*LGARYSLPSLR 209
Query: 133 PLPPS-HQTESHFALVLRRSSAATVCFLPUUGLCR 166
P + +T +FALV RSSAA VCFLP G CR
Sbjct: 208 LQPSALRRTVGNFALVPHRSSAAPVCFLP**GRCR 104
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.336 0.136 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 698842267
Number of extensions: 11831386
Number of successful extensions: 105997
Number of sequences better than 10: 2
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 105958
Number of HSP's successfully gapped: 2
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 15 (7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (19.6 bits)
S2: 78 (34.7 bits)
Query= gi|154332491|ref|NC_009299.1|:subseq(186214,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 7
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
emb|AM494944.1| Leishmania braziliensis chromosome 7 210 1e-52
ref|XM_001562486.1| Leishmania braziliensis MHOM/BR/75/M2904 hyp... 207 1e-51
ref|XM_001463184.1| Leishmania infantum hypothetical protein, co... 103 1e-20
emb|AM502225.1| Leishmania infantum chromosome 7 103 1e-20
ref|XM_001680891.1| Leishmania major hypothetical protein, conse... 93 4e-17
ref|XM_001561878.1| Leishmania braziliensis MHOM/BR/75/M2904 vac... 35 5.8
emb|AM494942.1| Leishmania braziliensis chromosome 5 35 5.8
>emb|AM494944.1| Leishmania braziliensis chromosome 7
Length = 586128
Score = 210 bits (535), Expect = 1e-52, Method: Composition-based stats.
Identities = 125/166 (75%), Positives = 125/166 (75%)
Frame = +3
Query: 1 LKTVVGAVHXXXXXXXXXXXXXXXXXXXXXXCLAGALGVVALRCSPKRRCTGVVPLLPSI 60
LKTVVGAVH CLAGALGVVALRCSPKRRCTGVVPLLPSI
Sbjct: 186216 LKTVVGAVHRRVSTR*TPSRARRRGARGWWRCLAGALGVVALRCSPKRRCTGVVPLLPSI 186395
Query: 61 IELKQKHFRCRGDSNAQHVISRVIHRHCTHVRHQSWQCTSELSWPAVXXXXXXXXXXXXX 120
IELKQKHFRCRGDSNAQHVISRVIHRHCTHVRHQSWQCTSELSWPAV
Sbjct: 186396 IELKQKHFRCRGDSNAQHVISRVIHRHCTHVRHQSWQCTSELSWPAVCCWS*GRGGSRYG 186575
Query: 121 XXXXXTERRICSRFRRPIKQRATLRXYYAVLQQQQSASSRDEGCVE 166
TERRICSRFRRPIKQRATLR YYAVLQQQQSASSRDEGCVE
Sbjct: 186576 SCGRSTERRICSRFRRPIKQRATLR*YYAVLQQQQSASSRDEGCVE 186713
>ref|XM_001562486.1| Leishmania braziliensis MHOM/BR/75/M2904 hypothetical protein,
conserved (LbrM07_V2.0400) partial mRNA
Length = 10617
Score = 207 bits (526), Expect = 1e-51, Method: Composition-based stats.
Identities = 125/166 (75%), Positives = 125/166 (75%)
Frame = -1
Query: 1 LKTVVGAVHXXXXXXXXXXXXXXXXXXXXXXCLAGALGVVALRCSPKRRCTGVVPLLPSI 60
LKTVVGAVH CLAGALGVVALRCSPKRRCTGVVPLLPSI
Sbjct: 588 LKTVVGAVHRRVSTR*TPSRARRRGARGWWRCLAGALGVVALRCSPKRRCTGVVPLLPSI 409
Query: 61 IELKQKHFRCRGDSNAQHVISRVIHRHCTHVRHQSWQCTSELSWPAVXXXXXXXXXXXXX 120
IELKQKHFRCRGDSNAQHVISRVIHRHCTHVRHQSWQCTSELSWPAV
Sbjct: 408 IELKQKHFRCRGDSNAQHVISRVIHRHCTHVRHQSWQCTSELSWPAVCCWS*GRGGSRYG 229
Query: 121 XXXXXTERRICSRFRRPIKQRATLRXYYAVLQQQQSASSRDEGCVE 166
TERRICSRFRRPIKQRATLR YYAVLQQQQSASSRDEGCVE
Sbjct: 228 SCGRSTERRICSRFRRPIKQRATLR*YYAVLQQQQSASSRDEGCVE 91
>ref|XM_001463184.1| Leishmania infantum hypothetical protein, conserved (LinJ07.0090)
partial mRNA
Length = 11271
Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats.
Identities = 68/134 (50%), Positives = 78/134 (58%), Gaps = 1/134 (0%)
Frame = -1
Query: 34 AGALGVVALRCSPKRRCTGVVPLLPSIIELKQKHFRCRGDSNAQHVISRVIHRHCTHVRH 93
A V AL CSPKRRCTGV P LP IIELKQ H RCRG NAQ +I ++HRH H R
Sbjct: 951 AAVHSVRALCCSPKRRCTGVAPQLPGIIELKQNHVRCRGYGNAQDIIGEMVHRHSAHPRR 772
Query: 94 QSWQCTSELSWPAVXXXXXXXXXXXXXXXXXXTERRICS-RFRRPIKQRATLRXYYAVLQ 152
+ QC S L+ A T RR+C RR ++Q ATLR ++ VLQ
Sbjct: 771 RGRQCPSRLASCAGCRSSRRRGGSGFGSWGRGTHRRLCGCHRRRFVEQWATLR*HHTVLQ 592
Query: 153 QQQSASSRDEGCVE 166
Q QSASSRDEG VE
Sbjct: 591 QHQSASSRDEGGVE 550
>emb|AM502225.1| Leishmania infantum chromosome 7
Length = 591632
Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats.
Identities = 68/134 (50%), Positives = 78/134 (58%), Gaps = 1/134 (0%)
Frame = -1
Query: 34 AGALGVVALRCSPKRRCTGVVPLLPSIIELKQKHFRCRGDSNAQHVISRVIHRHCTHVRH 93
A V AL CSPKRRCTGV P LP IIELKQ H RCRG NAQ +I ++HRH H R
Sbjct: 33182 AAVHSVRALCCSPKRRCTGVAPQLPGIIELKQNHVRCRGYGNAQDIIGEMVHRHSAHPRR 33003
Query: 94 QSWQCTSELSWPAVXXXXXXXXXXXXXXXXXXTERRICS-RFRRPIKQRATLRXYYAVLQ 152
+ QC S L+ A T RR+C RR ++Q ATLR ++ VLQ
Sbjct: 33002 RGRQCPSRLASCAGCRSSRRRGGSGFGSWGRGTHRRLCGCHRRRFVEQWATLR*HHTVLQ 32823
Query: 153 QQQSASSRDEGCVE 166
Q QSASSRDEG VE
Sbjct: 32822 QHQSASSRDEGGVE 32781
>ref|XM_001680891.1| Leishmania major hypothetical protein, conserved (LmjF07.0380)
partial mRNA
Length = 10779
Score = 92.8 bits (229), Expect = 4e-17, Method: Composition-based stats.
Identities = 62/126 (49%), Positives = 71/126 (56%), Gaps = 1/126 (0%)
Frame = -1
Query: 42 LRCSPKRRCTGVVPLLPSIIELKQKHFRCRGDSNAQHVISRVIHRHCTHVRHQSWQCTSE 101
L C P RRC GV P LP IIELKQKH RCRG NAQ +I ++HRH HV + QC S
Sbjct: 480 LCCPPNRRCAGVAPQLPGIIELKQKHVRCRGYGNAQDIIGEMVHRHSAHV*LRGRQCPSR 301
Query: 102 LSWPAVXXXXXXXXXXXXXXXXXXTERRICSRFRRP-IKQRATLRXYYAVLQQQQSASSR 160
L+ A T R+C RR ++Q ATLR Y+ VLQQ QS SSR
Sbjct: 300 LAPCAGCRSSRRRGGSGFGSWGRGTHCRLCGCSRRHFVEQWATLR*YHTVLQQHQSVSSR 121
Query: 161 DEGCVE 166
DEG VE
Sbjct: 120 DEGGVE 103
>ref|XM_001561878.1| Leishmania braziliensis MHOM/BR/75/M2904 vacuolar ATPase
subunit-like protein (LbrM05_V2.1140) partial mRNA
Length = 1074
Score = 35.4 bits (80), Expect = 5.8, Method: Composition-based stats.
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = -2
Query: 48 RRCTGVVPLLPSIIELKQKHFRCRGDSNAQHVISRV 83
RR TGV+ L+PS+ +K + R SN H+ SRV
Sbjct: 713 RRSTGVISLMPSVFSVKVRTMRSASASNRGHITSRV 606
>emb|AM494942.1| Leishmania braziliensis chromosome 5
Length = 459355
Score = 35.4 bits (80), Expect = 5.8, Method: Composition-based stats.
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = +2
Query: 48 RRCTGVVPLLPSIIELKQKHFRCRGDSNAQHVISRV 83
RR TGV+ L+PS+ +K + R SN H+ SRV
Sbjct: 406523 RRSTGVISLMPSVFSVKVRTMRSASASNRGHITSRV 406630
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.331 0.137 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 501019010
Number of extensions: 8194230
Number of successful extensions: 51641
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 51630
Number of HSP's successfully gapped: 0
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 15 (7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.0 bits)
S2: 78 (34.7 bits)
Query= gi|154332491|ref|NC_009299.1|:subseq(186214,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 7
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
ref|XM_001562486.1| Leishmania braziliensis MHOM/BR/75/M2904 hyp... 216 2e-54
emb|AM494944.1| Leishmania braziliensis chromosome 7 216 2e-54
ref|XM_001680891.1| Leishmania major hypothetical protein, conse... 127 9e-28
ref|XM_001463184.1| Leishmania infantum hypothetical protein, co... 122 5e-26
emb|AM502225.1| Leishmania infantum chromosome 7 122 5e-26
>ref|XM_001562486.1| Leishmania braziliensis MHOM/BR/75/M2904 hypothetical protein,
conserved (LbrM07_V2.0400) partial mRNA
Length = 10617
Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats.
Identities = 133/165 (80%), Positives = 133/165 (80%)
Frame = -2
Query: 2 KRSLGLCIDACRLGERPAVPDDAAPEDGGGVSPVPSALLPSAVRQNEDAQVLYHCSPASS 61
KRSLGLCIDACRLGERPAVPDDAAPEDGGGVSPVPSALLPSAVRQNEDAQVLYHCSPASS
Sbjct: 584 KRSLGLCIDACRLGERPAVPDDAAPEDGGGVSPVPSALLPSAVRQNEDAQVLYHCSPASS 405
Query: 62 NSNRNTSAVVATATRSMSSVEXYTDTAHTCDTKVGNVRASFLGLQXXXXXXXXXXXXXXX 121
NSNRNTSAVVATATRSMSSVE YTDTAHTCDTKVGNVRASFLGLQ
Sbjct: 404 NSNRNTSAVVATATRSMSSVE*YTDTAHTCDTKVGNVRASFLGLQSVAGLEVVVAAATVV 225
Query: 122 XXXXXXXXXXXXXXXPSNREPLCASTTPFFSSNSLLPPVMRAVXR 166
PSNREPLCASTTPFFSSNSLLPPVMRAV R
Sbjct: 224 VVAVLNVASAAASAVPSNREPLCASTTPFFSSNSLLPPVMRAV*R 90
>emb|AM494944.1| Leishmania braziliensis chromosome 7
Length = 586128
Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats.
Identities = 133/165 (80%), Positives = 133/165 (80%)
Frame = +1
Query: 2 KRSLGLCIDACRLGERPAVPDDAAPEDGGGVSPVPSALLPSAVRQNEDAQVLYHCSPASS 61
KRSLGLCIDACRLGERPAVPDDAAPEDGGGVSPVPSALLPSAVRQNEDAQVLYHCSPASS
Sbjct: 186220 KRSLGLCIDACRLGERPAVPDDAAPEDGGGVSPVPSALLPSAVRQNEDAQVLYHCSPASS 186399
Query: 62 NSNRNTSAVVATATRSMSSVEXYTDTAHTCDTKVGNVRASFLGLQXXXXXXXXXXXXXXX 121
NSNRNTSAVVATATRSMSSVE YTDTAHTCDTKVGNVRASFLGLQ
Sbjct: 186400 NSNRNTSAVVATATRSMSSVE*YTDTAHTCDTKVGNVRASFLGLQSVAGLEVVVAAATVV 186579
Query: 122 XXXXXXXXXXXXXXXPSNREPLCASTTPFFSSNSLLPPVMRAVXR 166
PSNREPLCASTTPFFSSNSLLPPVMRAV R
Sbjct: 186580 VVAVLNVASAAASAVPSNREPLCASTTPFFSSNSLLPPVMRAV*R 186714
>ref|XM_001680891.1| Leishmania major hypothetical protein, conserved (LmjF07.0380)
partial mRNA
Length = 10779
Score = 127 bits (320), Expect = 9e-28, Method: Composition-based stats.
Identities = 87/166 (52%), Positives = 99/166 (59%), Gaps = 1/166 (0%)
Frame = -2
Query: 2 KRSLGLCIDACRLGERPAVPDDAAPEDGGGVSPVPSALLPSAVRQNEDAQVLYHCSPASS 61
KR L C+D RL E PA+P DAA EDGGG+ +AL+ SAVRQ EDA+V H PASS
Sbjct: 599 KRLLRPCVDVHRLAELPALPGDAAAEDGGGIPLPCTALVTSAVRQTEDARVSRHSCPASS 420
Query: 62 NSNRNTSAVVATATRSMSSVEXYTDTAHTCDTKVGNVRASFLGLQXXXX-XXXXXXXXXX 120
+SN+NTS VVATATR SSV+ YTDTAHTCD++ GN RA +Q
Sbjct: 419 SSNKNTSVVVATATRKTSSVKWYTDTAHTCDSEAGNARADSPRVQAVAPLDAVVAAASVV 240
Query: 121 XXXXXXXXXXXXXXXXPSNREPLCASTTPFFSSNSLLPPVMRAVXR 166
SN LCASTTPFFSS SL PPVMRAV R
Sbjct: 239 GGAVLTAVSAAAAVGTSSNSGQLCASTTPFFSSTSLFPPVMRAV*R 102
>ref|XM_001463184.1| Leishmania infantum hypothetical protein, conserved (LinJ07.0090)
partial mRNA
Length = 11271
Score = 122 bits (305), Expect = 5e-26, Method: Composition-based stats.
Identities = 85/166 (51%), Positives = 95/166 (57%), Gaps = 1/166 (0%)
Frame = -2
Query: 2 KRSLGLCIDACRLGERPAVPDDAAPEDGGGVSPVPSALLPSAVRQNEDAQVLYHCSPASS 61
KR L C+D L E P++P DAA EDGGG+ + PSAVRQNEDA+V H PASS
Sbjct: 1046 KRLLRPCMDVHGLVELPSLPGDAAAEDGGGIPLPCTVFAPSAVRQNEDARVSRHSCPASS 867
Query: 62 NSNRNTSAVVATATRSMSSVEXYTDTAHTCDTKVGNVRASFLGLQXXXX-XXXXXXXXXX 120
NSN+ TS VVATATR SSV+ YTDTAHT D + GN RA +Q
Sbjct: 866 NSNKTTSVVVATATRKTSSVKWYTDTAHTRDAEAGNARADSPLVQAVAPLDVVVAAASVV 687
Query: 121 XXXXXXXXXXXXXXXXPSNREPLCASTTPFFSSNSLLPPVMRAVXR 166
SN LCASTTPFFSS SLLPPVMRAV R
Sbjct: 686 GGAVLTAVSAAATVGASSNSGQLCASTTPFFSSTSLLPPVMRAV*R 549
>emb|AM502225.1| Leishmania infantum chromosome 7
Length = 591632
Score = 122 bits (305), Expect = 5e-26, Method: Composition-based stats.
Identities = 85/166 (51%), Positives = 95/166 (57%), Gaps = 1/166 (0%)
Frame = -2
Query: 2 KRSLGLCIDACRLGERPAVPDDAAPEDGGGVSPVPSALLPSAVRQNEDAQVLYHCSPASS 61
KR L C+D L E P++P DAA EDGGG+ + PSAVRQNEDA+V H PASS
Sbjct: 33277 KRLLRPCMDVHGLVELPSLPGDAAAEDGGGIPLPCTVFAPSAVRQNEDARVSRHSCPASS 33098
Query: 62 NSNRNTSAVVATATRSMSSVEXYTDTAHTCDTKVGNVRASFLGLQXXXX-XXXXXXXXXX 120
NSN+ TS VVATATR SSV+ YTDTAHT D + GN RA +Q
Sbjct: 33097 NSNKTTSVVVATATRKTSSVKWYTDTAHTRDAEAGNARADSPLVQAVAPLDVVVAAASVV 32918
Query: 121 XXXXXXXXXXXXXXXXPSNREPLCASTTPFFSSNSLLPPVMRAVXR 166
SN LCASTTPFFSS SLLPPVMRAV R
Sbjct: 32917 GGAVLTAVSAAATVGASSNSGQLCASTTPFFSSTSLLPPVMRAV*R 32780
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.322 0.132 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 417944951
Number of extensions: 4515988
Number of successful extensions: 35667
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 35659
Number of HSP's successfully gapped: 0
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 16 (7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 78 (34.7 bits)
Query= gi|154332491|ref|NC_009299.1|:subseq(351825,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 7:[revcomp]
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
ref|XM_001562500.1| Leishmania braziliensis MHOM/BR/75/M2904 hyp... 214 9e-54
emb|AM494944.1| Leishmania braziliensis chromosome 7 214 9e-54
ref|XM_001680902.1| Leishmania major hypothetical protein, conse... 150 1e-34
ref|XM_001463234.1| Leishmania infantum hypothetical protein, co... 147 1e-33
emb|AM502225.1| Leishmania infantum chromosome 7 147 1e-33
>ref|XM_001562500.1| Leishmania braziliensis MHOM/BR/75/M2904 hypothetical protein,
conserved (LbrM07_V2.0540) partial mRNA
Length = 13635
Score = 214 bits (544), Expect = 9e-54, Method: Composition-based stats.
Identities = 123/166 (74%), Positives = 123/166 (74%)
Frame = -2
Query: 1 AKFFAASVLRRYCXXXXXXXXXXXXXXRIAWLFVFASLTIFTMVLWNADTRAAKXFSHFC 60
AKFFAASVLRRYC RIAWLFVFASLTIFTMVLWNADTRAAK FSHFC
Sbjct: 911 AKFFAASVLRRYCSSSGTVVGVP*STSRIAWLFVFASLTIFTMVLWNADTRAAK*FSHFC 732
Query: 61 ISSDRNGRQLIXXXXXXXXXXXXXXXXXXFCRAXXXXXXXXVDVPLFAMERLWTGILQNL 120
ISSDRNGRQLI FCRA VDVPLFAMERLWTGILQNL
Sbjct: 731 ISSDRNGRQLISRRP*KRTSRET*RTSLRFCRASTTSSTTSVDVPLFAMERLWTGILQNL 552
Query: 121 LXEDKILUITTDAFSNTPVIEVRYDASSTCDTMFNFSFSSLCARKM 166
L EDKIL ITTDAFSNTPVIEVRYDASSTCDTMFNFSFSSLCARKM
Sbjct: 551 L*EDKIL*ITTDAFSNTPVIEVRYDASSTCDTMFNFSFSSLCARKM 414
>emb|AM494944.1| Leishmania braziliensis chromosome 7
Length = 586128
Score = 214 bits (544), Expect = 9e-54, Method: Composition-based stats.
Identities = 123/166 (74%), Positives = 123/166 (74%)
Frame = -1
Query: 1 AKFFAASVLRRYCXXXXXXXXXXXXXXRIAWLFVFASLTIFTMVLWNADTRAAKXFSHFC 60
AKFFAASVLRRYC RIAWLFVFASLTIFTMVLWNADTRAAK FSHFC
Sbjct: 234303 AKFFAASVLRRYCSSSGTVVGVP*STSRIAWLFVFASLTIFTMVLWNADTRAAK*FSHFC 234124
Query: 61 ISSDRNGRQLIXXXXXXXXXXXXXXXXXXFCRAXXXXXXXXVDVPLFAMERLWTGILQNL 120
ISSDRNGRQLI FCRA VDVPLFAMERLWTGILQNL
Sbjct: 234123 ISSDRNGRQLISRRP*KRTSRET*RTSLRFCRASTTSSTTSVDVPLFAMERLWTGILQNL 233944
Query: 121 LXEDKILUITTDAFSNTPVIEVRYDASSTCDTMFNFSFSSLCARKM 166
L EDKIL ITTDAFSNTPVIEVRYDASSTCDTMFNFSFSSLCARKM
Sbjct: 233943 L*EDKIL*ITTDAFSNTPVIEVRYDASSTCDTMFNFSFSSLCARKM 233806
>ref|XM_001680902.1| Leishmania major hypothetical protein, conserved (LmjF07.0480)
partial mRNA
Length = 14622
Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats.
Identities = 90/166 (54%), Positives = 101/166 (60%)
Frame = -2
Query: 1 AKFFAASVLRRYCXXXXXXXXXXXXXXRIAWLFVFASLTIFTMVLWNADTRAAKXFSHFC 60
AK AASVLR+ C RIA LF FAS TI TMV WNADT+A K FSHFC
Sbjct: 1910 AKAIAASVLRKCCSNSCTVEGVA*SMSRIARLFAFASSTILTMVFWNADTKADK*FSHFC 1731
Query: 61 ISSDRNGRQLIXXXXXXXXXXXXXXXXXXFCRAXXXXXXXXVDVPLFAMERLWTGILQNL 120
+SS+RNGRQLI F RA VP+FAM RL TGILQNL
Sbjct: 1730 VSSNRNGRQLISRRP*NRTS*ET*RISVRFRRASTTSSSTSAGVPVFAMARLCTGILQNL 1551
Query: 121 LXEDKILUITTDAFSNTPVIEVRYDASSTCDTMFNFSFSSLCARKM 166
L EDKIL I+TDA SNTPVI+ RY+A STCDTM +F SL +RK+
Sbjct: 1550 L*EDKILLISTDAPSNTPVIDARYEAISTCDTMVSFLSPSLGSRKI 1413
>ref|XM_001463234.1| Leishmania infantum hypothetical protein, conserved (LinJ07.0620)
partial mRNA
Length = 14550
Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 88/166 (53%), Positives = 100/166 (60%)
Frame = -2
Query: 1 AKFFAASVLRRYCXXXXXXXXXXXXXXRIAWLFVFASLTIFTMVLWNADTRAAKXFSHFC 60
AK AA VLR+ C RIA LF FAS TI TMVLWNADT+A K FSHFC
Sbjct: 1835 AKAIAALVLRKCCSNSCTVEGVA*SMSRIARLFAFASSTILTMVLWNADTKADK*FSHFC 1656
Query: 61 ISSDRNGRQLIXXXXXXXXXXXXXXXXXXFCRAXXXXXXXXVDVPLFAMERLWTGILQNL 120
+SS+RNGRQLI F RA VP+FAM RL TGILQNL
Sbjct: 1655 VSSNRNGRQLISRRP*NRTS*ET*RISVRFRRASTTSSTTSAGVPVFAMARLCTGILQNL 1476
Query: 121 LXEDKILUITTDAFSNTPVIEVRYDASSTCDTMFNFSFSSLCARKM 166
L EDKIL I+TDA S+TP I+ RY+A STCDTM +F SL +RK+
Sbjct: 1475 L*EDKILLISTDALSSTPAIDARYEAISTCDTMVSFLSPSLGSRKI 1338
>emb|AM502225.1| Leishmania infantum chromosome 7
Length = 591632
Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 88/166 (53%), Positives = 100/166 (60%)
Frame = +2
Query: 1 AKFFAASVLRRYCXXXXXXXXXXXXXXRIAWLFVFASLTIFTMVLWNADTRAAKXFSHFC 60
AK AA VLR+ C RIA LF FAS TI TMVLWNADT+A K FSHFC
Sbjct: 267524 AKAIAALVLRKCCSNSCTVEGVA*SMSRIARLFAFASSTILTMVLWNADTKADK*FSHFC 267703
Query: 61 ISSDRNGRQLIXXXXXXXXXXXXXXXXXXFCRAXXXXXXXXVDVPLFAMERLWTGILQNL 120
+SS+RNGRQLI F RA VP+FAM RL TGILQNL
Sbjct: 267704 VSSNRNGRQLISRRP*NRTS*ET*RISVRFRRASTTSSTTSAGVPVFAMARLCTGILQNL 267883
Query: 121 LXEDKILUITTDAFSNTPVIEVRYDASSTCDTMFNFSFSSLCARKM 166
L EDKIL I+TDA S+TP I+ RY+A STCDTM +F SL +RK+
Sbjct: 267884 L*EDKILLISTDALSSTPAIDARYEAISTCDTMVSFLSPSLGSRKI 268021
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.342 0.143 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 419669063
Number of extensions: 4161777
Number of successful extensions: 28453
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 28449
Number of HSP's successfully gapped: 0
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 15 (7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (19.2 bits)
S2: 78 (34.7 bits)
Query= gi|154332491|ref|NC_009299.1|:subseq(351825,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 7:[revcomp]
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
ref|XM_001562500.1| Leishmania braziliensis MHOM/BR/75/M2904 hyp... 263 1e-68
emb|AM494944.1| Leishmania braziliensis chromosome 7 263 1e-68
ref|XM_001680902.1| Leishmania major hypothetical protein, conse... 129 3e-28
ref|XM_001463234.1| Leishmania infantum hypothetical protein, co... 129 3e-28
emb|AM502225.1| Leishmania infantum chromosome 7 129 3e-28
>ref|XM_001562500.1| Leishmania braziliensis MHOM/BR/75/M2904 hypothetical protein,
conserved (LbrM07_V2.0540) partial mRNA
Length = 13635
Score = 263 bits (672), Expect = 1e-68, Method: Composition-based stats.
Identities = 149/166 (89%), Positives = 149/166 (89%)
Frame = -3
Query: 1 PNFSPLRYCAGTAPARELSXGFLEARQESLGSLFLPRURYSLWCFGMQTQEPPNNFPTSA 60
PNFSPLRYCAGTAPARELS GFLEARQESLGSLFLPR RYSLWCFGMQTQEPPNNFPTSA
Sbjct: 910 PNFSPLRYCAGTAPARELS*GFLEARQESLGSLFLPR*RYSLWCFGMQTQEPPNNFPTSA 731
Query: 61 SAPTAMDGSUSRGAXXXXXXXXXXXXXLGFAARAPQVLPPLSTFPSLQWKGYGPVSCKIC 120
SAPTAMDGS SRGA LGFAARAPQVLPPLSTFPSLQWKGYGPVSCKIC
Sbjct: 730 SAPTAMDGS*SRGAHRREHPERRDEHRLGFAARAPQVLPPLSTFPSLQWKGYGPVSCKIC 551
Query: 121 YKRIKSCESPLMRSPILRULRCGTMPVPHATQCLIFRFRASVLEKW 166
YKRIKSCESPLMRSPILR LRCGTMPVPHATQCLIFRFRASVLEKW
Sbjct: 550 YKRIKSCESPLMRSPILR*LRCGTMPVPHATQCLIFRFRASVLEKW 413
>emb|AM494944.1| Leishmania braziliensis chromosome 7
Length = 586128
Score = 263 bits (672), Expect = 1e-68, Method: Composition-based stats.
Identities = 149/166 (89%), Positives = 149/166 (89%)
Frame = -2
Query: 1 PNFSPLRYCAGTAPARELSXGFLEARQESLGSLFLPRURYSLWCFGMQTQEPPNNFPTSA 60
PNFSPLRYCAGTAPARELS GFLEARQESLGSLFLPR RYSLWCFGMQTQEPPNNFPTSA
Sbjct: 234302 PNFSPLRYCAGTAPARELS*GFLEARQESLGSLFLPR*RYSLWCFGMQTQEPPNNFPTSA 234123
Query: 61 SAPTAMDGSUSRGAXXXXXXXXXXXXXLGFAARAPQVLPPLSTFPSLQWKGYGPVSCKIC 120
SAPTAMDGS SRGA LGFAARAPQVLPPLSTFPSLQWKGYGPVSCKIC
Sbjct: 234122 SAPTAMDGS*SRGAHRREHPERRDEHRLGFAARAPQVLPPLSTFPSLQWKGYGPVSCKIC 233943
Query: 121 YKRIKSCESPLMRSPILRULRCGTMPVPHATQCLIFRFRASVLEKW 166
YKRIKSCESPLMRSPILR LRCGTMPVPHATQCLIFRFRASVLEKW
Sbjct: 233942 YKRIKSCESPLMRSPILR*LRCGTMPVPHATQCLIFRFRASVLEKW 233805
>ref|XM_001680902.1| Leishmania major hypothetical protein, conserved (LmjF07.0480)
partial mRNA
Length = 14622
Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats.
Identities = 95/165 (57%), Positives = 103/165 (62%)
Frame = -3
Query: 1 PNFSPLRYCAGTAPARELSXGFLEARQESLGSLFLPRURYSLWCFGMQTQEPPNNFPTSA 60
P SPLRYCA AP S G+LEA QES GSL LPR +YSLWC GMQTQ NNFPTSA
Sbjct: 1909 PKQSPLRYCASAAPTPAPSKGWLEACQESHGSLPLPRRQYSLWCSGMQTQRLTNNFPTSA 1730
Query: 61 SAPTAMDGSUSRGAXXXXXXXXXXXXXLGFAARAPQVLPPLSTFPSLQWKGYGPVSCKIC 120
SAPTA DG+ S+GA GF ARAP+ PP FPSLQW+G VSCKIC
Sbjct: 1729 SAPTATDGN*SQGARRTEHHERRDEYRSGFVARAPRAPPPPPVFPSLQWQGCALVSCKIC 1550
Query: 121 YKRIKSCESPLMRSPILRULRCGTMPVPHATQCLIFRFRASVLEK 165
Y+R KSC S LMR L GT P P ATQ + RASVL K
Sbjct: 1549 YRRTKSC*SALMRLLTLL*STHGTRPSPRATQW*VSCRRASVLGK 1415
>ref|XM_001463234.1| Leishmania infantum hypothetical protein, conserved (LinJ07.0620)
partial mRNA
Length = 14550
Score = 129 bits (324), Expect = 3e-28, Method: Composition-based stats.
Identities = 94/165 (56%), Positives = 104/165 (63%)
Frame = -3
Query: 1 PNFSPLRYCAGTAPARELSXGFLEARQESLGSLFLPRURYSLWCFGMQTQEPPNNFPTSA 60
P SPL YCA AP S G+LEA QES GSL LPR +YSLWC GMQTQ+P NNFPTSA
Sbjct: 1834 PKQSPLWYCASAAPTPAPSKGWLEACQESHGSLPLPRRQYSLWCSGMQTQKPTNNFPTSA 1655
Query: 61 SAPTAMDGSUSRGAXXXXXXXXXXXXXLGFAARAPQVLPPLSTFPSLQWKGYGPVSCKIC 120
SAPTA DG+ S+GA GF ARAP+ PP FPSLQW+G VSCKIC
Sbjct: 1654 SAPTATDGN*SQGARRTEHHERRDEYRSGFVARAPRAPPPPPVFPSLQWQGCALVSCKIC 1475
Query: 121 YKRIKSCESPLMRSPILRULRCGTMPVPHATQCLIFRFRASVLEK 165
Y+R KSC S LMR L GT P P ATQ + +ASVL K
Sbjct: 1474 YRRTKSC*SVLMRFLALLRSTHGTRPSPRATQW*VSCRQASVLGK 1340
>emb|AM502225.1| Leishmania infantum chromosome 7
Length = 591632
Score = 129 bits (324), Expect = 3e-28, Method: Composition-based stats.
Identities = 94/165 (56%), Positives = 104/165 (63%)
Frame = +3
Query: 1 PNFSPLRYCAGTAPARELSXGFLEARQESLGSLFLPRURYSLWCFGMQTQEPPNNFPTSA 60
P SPL YCA AP S G+LEA QES GSL LPR +YSLWC GMQTQ+P NNFPTSA
Sbjct: 267525 PKQSPLWYCASAAPTPAPSKGWLEACQESHGSLPLPRRQYSLWCSGMQTQKPTNNFPTSA 267704
Query: 61 SAPTAMDGSUSRGAXXXXXXXXXXXXXLGFAARAPQVLPPLSTFPSLQWKGYGPVSCKIC 120
SAPTA DG+ S+GA GF ARAP+ PP FPSLQW+G VSCKIC
Sbjct: 267705 SAPTATDGN*SQGARRTEHHERRDEYRSGFVARAPRAPPPPPVFPSLQWQGCALVSCKIC 267884
Query: 121 YKRIKSCESPLMRSPILRULRCGTMPVPHATQCLIFRFRASVLEK 165
Y+R KSC S LMR L GT P P ATQ + +ASVL K
Sbjct: 267885 YRRTKSC*SVLMRFLALLRSTHGTRPSPRATQW*VSCRQASVLGK 268019
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.327 0.139 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 628618575
Number of extensions: 10361069
Number of successful extensions: 139076
Number of sequences better than 10: 2
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 139038
Number of HSP's successfully gapped: 2
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 15 (7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.0 bits)
S2: 78 (34.7 bits)
Query= gi|154332491|ref|NC_009299.1|:subseq(351825,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 7:[revcomp]
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
ref|XM_001562500.1| Leishmania braziliensis MHOM/BR/75/M2904 hyp... 331 4e-89
emb|AM494944.1| Leishmania braziliensis chromosome 7 331 4e-89
ref|XM_001463234.1| Leishmania infantum hypothetical protein, co... 195 3e-48
emb|AM502225.1| Leishmania infantum chromosome 7 195 3e-48
ref|XM_001680902.1| Leishmania major hypothetical protein, conse... 195 5e-48
>ref|XM_001562500.1| Leishmania braziliensis MHOM/BR/75/M2904 hypothetical protein,
conserved (LbrM07_V2.0540) partial mRNA
Length = 13635
Score = 331 bits (849), Expect = 4e-89, Method: Composition-based stats.
Identities = 164/166 (98%), Positives = 164/166 (98%)
Frame = -1
Query: 1 QIFRRFGIAQVLLQLGNCRRGSLKHVKNRLALCFCLVDDIHYGALECRHKSRQIIFPLLH 60
QIFRRFGIAQVLLQLGNCRRGSLKHVKNRLALCFCLVDDIHYGALECRHKSRQIIFPLLH
Sbjct: 909 QIFRRFGIAQVLLQLGNCRRGSLKHVKNRLALCFCLVDDIHYGALECRHKSRQIIFPLLH 730
Query: 61 QLRPQWTAVDLEAPIEENIPRDVTNIA*VLPREHHKFYHLCRRSPLCNGKVMDRYLAKFV 120
QLRPQWTAVDLEAPIEENIPRDVTNIA*VLPREHHKFYHLCRRSPLCNGKVMDRYLAKFV
Sbjct: 729 QLRPQWTAVDLEAPIEENIPRDVTNIA*VLPREHHKFYHLCRRSPLCNGKVMDRYLAKFV 550
Query: 121 IRG*NLVNHHUCVLQYSGDUGAVRCQFHMRHNV*FFVFEPLCSKNG 166
IRG*NLVNHH CVLQYSGD GAVRCQFHMRHNV*FFVFEPLCSKNG
Sbjct: 549 IRG*NLVNHH*CVLQYSGD*GAVRCQFHMRHNV*FFVFEPLCSKNG 412
>emb|AM494944.1| Leishmania braziliensis chromosome 7
Length = 586128
Score = 331 bits (849), Expect = 4e-89, Method: Composition-based stats.
Identities = 164/166 (98%), Positives = 164/166 (98%)
Frame = -3
Query: 1 QIFRRFGIAQVLLQLGNCRRGSLKHVKNRLALCFCLVDDIHYGALECRHKSRQIIFPLLH 60
QIFRRFGIAQVLLQLGNCRRGSLKHVKNRLALCFCLVDDIHYGALECRHKSRQIIFPLLH
Sbjct: 234301 QIFRRFGIAQVLLQLGNCRRGSLKHVKNRLALCFCLVDDIHYGALECRHKSRQIIFPLLH 234122
Query: 61 QLRPQWTAVDLEAPIEENIPRDVTNIA*VLPREHHKFYHLCRRSPLCNGKVMDRYLAKFV 120
QLRPQWTAVDLEAPIEENIPRDVTNIA*VLPREHHKFYHLCRRSPLCNGKVMDRYLAKFV
Sbjct: 234121 QLRPQWTAVDLEAPIEENIPRDVTNIA*VLPREHHKFYHLCRRSPLCNGKVMDRYLAKFV 233942
Query: 121 IRG*NLVNHHUCVLQYSGDUGAVRCQFHMRHNV*FFVFEPLCSKNG 166
IRG*NLVNHH CVLQYSGD GAVRCQFHMRHNV*FFVFEPLCSKNG
Sbjct: 233941 IRG*NLVNHH*CVLQYSGD*GAVRCQFHMRHNV*FFVFEPLCSKNG 233804
>ref|XM_001463234.1| Leishmania infantum hypothetical protein, conserved (LinJ07.0620)
partial mRNA
Length = 14550
Score = 195 bits (496), Expect = 3e-48, Method: Composition-based stats.
Identities = 107/162 (66%), Positives = 121/162 (74%)
Frame = -1
Query: 4 RRFGIAQVLLQLGNCRRGSLKHVKNRLALCFCLVDDIHYGALECRHKSRQIIFPLLHQLR 63
RRFGIAQVLLQL + RRG LKHVKNR ALC CLVD+ HYGALECRHKSRQIIFPLL QL+
Sbjct: 1824 RRFGIAQVLLQLLHRRRGGLKHVKNRTALCLCLVDNTHYGALECRHKSRQIIFPLLRQLQ 1645
Query: 64 PQWTAVDLEAPIEENIPRDVTNIA*VLPREHHKFYHLCRRSPLCNGKVMDRYLAKFVIRG 123
PQ TA DL+AP+E+NI RDVTNI V REHH+ +HL R S LCNGKV+ YLAKF I G
Sbjct: 1644 PQRTATDLKAPVEQNIMRDVTNIGQVSSREHHELHHLRRCSRLCNGKVVHWYLAKFAIGG 1465
Query: 124 *NLVNHHUCVLQYSGDUGAVRCQFHMRHNV*FFVFEPLCSKN 165
NLVN + C +S D VR H+RHN F V +P S+N
Sbjct: 1464 QNLVNQY*CAF*HSCDRRTVRGHLHVRHNGEFLVAKPRFSEN 1339
>emb|AM502225.1| Leishmania infantum chromosome 7
Length = 591632
Score = 195 bits (496), Expect = 3e-48, Method: Composition-based stats.
Identities = 107/162 (66%), Positives = 121/162 (74%)
Frame = +1
Query: 4 RRFGIAQVLLQLGNCRRGSLKHVKNRLALCFCLVDDIHYGALECRHKSRQIIFPLLHQLR 63
RRFGIAQVLLQL + RRG LKHVKNR ALC CLVD+ HYGALECRHKSRQIIFPLL QL+
Sbjct: 267535 RRFGIAQVLLQLLHRRRGGLKHVKNRTALCLCLVDNTHYGALECRHKSRQIIFPLLRQLQ 267714
Query: 64 PQWTAVDLEAPIEENIPRDVTNIA*VLPREHHKFYHLCRRSPLCNGKVMDRYLAKFVIRG 123
PQ TA DL+AP+E+NI RDVTNI V REHH+ +HL R S LCNGKV+ YLAKF I G
Sbjct: 267715 PQRTATDLKAPVEQNIMRDVTNIGQVSSREHHELHHLRRCSRLCNGKVVHWYLAKFAIGG 267894
Query: 124 *NLVNHHUCVLQYSGDUGAVRCQFHMRHNV*FFVFEPLCSKN 165
NLVN + C +S D VR H+RHN F V +P S+N
Sbjct: 267895 QNLVNQY*CAF*HSCDRRTVRGHLHVRHNGEFLVAKPRFSEN 268020
>ref|XM_001680902.1| Leishmania major hypothetical protein, conserved (LmjF07.0480)
partial mRNA
Length = 14622
Score = 195 bits (495), Expect = 5e-48, Method: Composition-based stats.
Identities = 106/162 (65%), Positives = 117/162 (72%)
Frame = -1
Query: 4 RRFGIAQVLLQLGNCRRGSLKHVKNRLALCFCLVDDIHYGALECRHKSRQIIFPLLHQLR 63
RRFGIAQVLLQL + RRG LKHVKNR ALC CLVD+ HYG LECRHK QIIFPLL QL+
Sbjct: 1899 RRFGIAQVLLQLLHRRRGGLKHVKNRTALCLCLVDNTHYGVLECRHKG*QIIFPLLRQLQ 1720
Query: 64 PQWTAVDLEAPIEENIPRDVTNIA*VLPREHHKFYHLCRRSPLCNGKVMDRYLAKFVIRG 123
PQ TA DL+AP+E+NI RDVTNI V REHH+ HL R S LCNGKV+ YLAKF I G
Sbjct: 1719 PQRTATDLKAPVEQNIMRDVTNIGQVSSREHHELLHLRRCSRLCNGKVVHWYLAKFAIGG 1540
Query: 124 *NLVNHHUCVLQYSGDUGAVRCQFHMRHNV*FFVFEPLCSKN 165
NLVN H C +S D VR H+RHN F V EP S+N
Sbjct: 1539 QNLVNQH*CAF*HSCDRRTVRGHLHVRHNGEFLVAEPRFSEN 1414
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.341 0.151 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 680430979
Number of extensions: 11861529
Number of successful extensions: 83122
Number of sequences better than 10: 2
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 83098
Number of HSP's successfully gapped: 2
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 15 (7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (19.6 bits)
S2: 78 (34.7 bits)
Query= gi|154332491|ref|NC_009299.1|:subseq(519162,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 7
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
emb|AM494944.1| Leishmania braziliensis chromosome 7 215 4e-54
ref|XM_001562558.1| Leishmania braziliensis MHOM/BR/75/M2904 RNA... 107 1e-21
emb|AM502225.1| Leishmania infantum chromosome 7 69 7e-10
ref|XM_001680967.1| Leishmania major RNA-editing complex protein... 63 3e-08
ref|XM_001463287.1| Leishmania infantum RNA-editing complex prot... 59 7e-07
gb|AY437473.1| Leishmania major MP42 gene, complete cds 54 1e-05
emb|CU638870.6| Zebrafish DNA sequence from clone DKEY-237P10 in... 35 9.6
emb|BX324006.19| Zebrafish DNA sequence from clone DKEY-46M10 in... 35 9.6
>emb|AM494944.1| Leishmania braziliensis chromosome 7
Length = 586128
Score = 215 bits (547), Expect = 4e-54, Method: Composition-based stats.
Identities = 121/166 (72%), Positives = 121/166 (72%)
Frame = +1
Query: 1 RVCXXXXXXXXXXXXXXXXXTRPSVWQPSALDARCACVCACRYTSAPLGDSILFKTXXXX 60
RVC TRPSVWQPSALDARCACVCACRYTSAPLGDSILFKT
Sbjct: 519163 RVCLSSRFSRPHPPRFPLSRTRPSVWQPSALDARCACVCACRYTSAPLGDSILFKTLAHH 519342
Query: 61 XXXXXXXXXXWRTRGSFLTXRVNFPPLRLFELVAHEANCRGNMSATVVGLNXXXXXXXXX 120
WRTRGSFLT RVNFPPLRLFELVAHEANCRGNMSATVVGLN
Sbjct: 519343 HQPAPLQQQPWRTRGSFLT*RVNFPPLRLFELVAHEANCRGNMSATVVGLNAAAPRR*VR 519522
Query: 121 XXXXWAAHHSRYRGASYHPSPRSVLHGGLLRIERCAISVWRVREDV 166
WAAHHSRYRGASYHPSPRSVLHGGLLRIERCAISVWRVREDV
Sbjct: 519523 NATAWAAHHSRYRGASYHPSPRSVLHGGLLRIERCAISVWRVREDV 519660
>ref|XM_001562558.1| Leishmania braziliensis MHOM/BR/75/M2904 RNA-editing complex
protein, putative (LbrM07_V2.1140) partial mRNA
Length = 1296
Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats.
Identities = 58/71 (81%), Positives = 58/71 (81%)
Frame = +3
Query: 96 EANCRGNMSATVVGLNXXXXXXXXXXXXXWAAHHSRYRGASYHPSPRSVLHGGLLRIERC 155
EANCRGNMSATVVGLN WAAHHSRYRGASYHPSPRSVLHGGLLRIERC
Sbjct: 3 EANCRGNMSATVVGLNAAAPRR*VRNATAWAAHHSRYRGASYHPSPRSVLHGGLLRIERC 182
Query: 156 AISVWRVREDV 166
AISVWRVREDV
Sbjct: 183 AISVWRVREDV 215
>emb|AM502225.1| Leishmania infantum chromosome 7
Length = 591632
Score = 68.6 bits (166), Expect = 7e-10, Method: Composition-based stats.
Identities = 42/86 (48%), Positives = 51/86 (59%)
Frame = +2
Query: 81 RVNFPPLRLFELVAHEANCRGNMSATVVGLNXXXXXXXXXXXXXWAAHHSRYRGASYHPS 140
RVN P EL AH + GN+SATV L+ A HSRYRG S++
Sbjct: 498971 RVNSSPYAFSELCAHATDWCGNLSATVACLSNAAARREMRNTMVRA*LHSRYRGVSHNRD 499150
Query: 141 PRSVLHGGLLRIERCAISVWRVREDV 166
PRS L+GGLLR E CA+SVWRVR++V
Sbjct: 499151 PRSALYGGLLRPEGCAVSVWRVRQNV 499228
>ref|XM_001680967.1| Leishmania major RNA-editing complex protein, putative
(LmjF07.1070) partial mRNA
Length = 1506
Score = 63.2 bits (152), Expect = 3e-08, Method: Composition-based stats.
Identities = 40/82 (48%), Positives = 47/82 (57%)
Frame = +3
Query: 85 PPLRLFELVAHEANCRGNMSATVVGLNXXXXXXXXXXXXXWAAHHSRYRGASYHPSPRSV 144
PP EL AH + GNMSATV L+ A HSRYRG S++ PRS
Sbjct: 129 PPYAFSELSAHATDWCGNMSATVACLSNAAPRREVRNAMVRAQLHSRYRGVSHNRRPRSA 308
Query: 145 LHGGLLRIERCAISVWRVREDV 166
LHGGLLR E CA+SV VR++V
Sbjct: 309 LHGGLLRPEGCAVSVR*VRQNV 374
>ref|XM_001463287.1| Leishmania infantum RNA-editing complex protein, putative
(LinJ07.1140) partial mRNA
Length = 1353
Score = 58.5 bits (140), Expect = 7e-07, Method: Composition-based stats.
Identities = 34/66 (51%), Positives = 42/66 (63%)
Frame = +3
Query: 101 GNMSATVVGLNXXXXXXXXXXXXXWAAHHSRYRGASYHPSPRSVLHGGLLRIERCAISVW 160
GN+SATV L+ A HSRYRG S++ PRS L+GGLLR E CA+SVW
Sbjct: 18 GNLSATVACLSNAAARREMRNTMVRA*LHSRYRGVSHNRDPRSALYGGLLRPEGCAVSVW 197
Query: 161 RVREDV 166
RVR++V
Sbjct: 198 RVRQNV 215
>gb|AY437473.1| Leishmania major MP42 gene, complete cds
Length = 1347
Score = 54.3 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 34/66 (51%), Positives = 40/66 (60%)
Frame = +3
Query: 101 GNMSATVVGLNXXXXXXXXXXXXXWAAHHSRYRGASYHPSPRSVLHGGLLRIERCAISVW 160
GNMSATV L+ A HSRYRG S++ PRS LHGGLLR E CA+SV
Sbjct: 18 GNMSATVACLSNAAPRREVRNAMVRAQLHSRYRGVSHNRRPRSALHGGLLRPEGCAVSVR 197
Query: 161 RVREDV 166
VR++V
Sbjct: 198 *VRQNV 215
>emb|CU638870.6| Zebrafish DNA sequence from clone DKEY-237P10 in linkage group 16,
complete sequence
Length = 136918
Score = 34.7 bits (78), Expect = 9.6, Method: Composition-based stats.
Identities = 15/28 (53%), Positives = 19/28 (67%)
Frame = +3
Query: 24 SVWQPSALDARCACVCACRYTSAPLGDS 51
S + P +D+ CACVC CR+ SAP G S
Sbjct: 111912 SDYYPFQMDSCCACVCVCRWVSAPRGGS 111995
>emb|BX324006.19| Zebrafish DNA sequence from clone DKEY-46M10 in linkage group 16,
complete sequence
Length = 135340
Score = 34.7 bits (78), Expect = 9.6, Method: Composition-based stats.
Identities = 15/28 (53%), Positives = 19/28 (67%)
Frame = +1
Query: 24 SVWQPSALDARCACVCACRYTSAPLGDS 51
S + P +D+ CACVC CR+ SAP G S
Sbjct: 44821 SDYYPFQMDSCCACVCVCRWVSAPRGGS 44904
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.331 0.139 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 560626207
Number of extensions: 7996989
Number of successful extensions: 359942
Number of sequences better than 10: 2
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 348866
Number of HSP's successfully gapped: 4
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 15 (7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.0 bits)
S2: 78 (34.7 bits)
Query= gi|154332491|ref|NC_009299.1|:subseq(519162,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 7
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
emb|AM494944.1| Leishmania braziliensis chromosome 7 318 4e-85
ref|XM_001562558.1| Leishmania braziliensis MHOM/BR/75/M2904 RNA... 147 2e-33
ref|XM_001680967.1| Leishmania major RNA-editing complex protein... 112 5e-23
emb|AM502225.1| Leishmania infantum chromosome 7 109 2e-22
gb|AY437473.1| Leishmania major MP42 gene, complete cds 107 2e-21
ref|XM_001463287.1| Leishmania infantum RNA-editing complex prot... 105 6e-21
ref|XM_802632.1| Trypanosoma cruzi strain CL Brener RNA-editing ... 37 1.4
gb|AY437489.1| Trypanosoma cruzi MP42 gene, complete cds 37 1.5
ref|XM_809706.1| Trypanosoma cruzi strain CL Brener RNA-editing ... 37 1.5
>emb|AM494944.1| Leishmania braziliensis chromosome 7
Length = 586128
Score = 318 bits (814), Expect = 4e-85, Method: Composition-based stats.
Identities = 166/166 (100%), Positives = 166/166 (100%)
Frame = +2
Query: 1 VFVYLPASLARTPLVFPSLARDRQCGSRQLWMLAVRVCALAGIRLHHLATPFYLRL*RIT 60
VFVYLPASLARTPLVFPSLARDRQCGSRQLWMLAVRVCALAGIRLHHLATPFYLRL*RIT
Sbjct: 519164 VFVYLPASLARTPLVFPSLARDRQCGSRQLWMLAVRVCALAGIRLHHLATPFYLRL*RIT 519343
Query: 61 ISRHRCSNNRGAQGARFSRRE*TSPPYAFSSWLRMRRIAVATCQRRWLASTLLPRGGKCV 120
ISRHRCSNNRGAQGARFSRRE*TSPPYAFSSWLRMRRIAVATCQRRWLASTLLPRGGKCV
Sbjct: 519344 ISRHRCSNNRGAQGARFSRRE*TSPPYAFSSWLRMRRIAVATCQRRWLASTLLPRGGKCV 519523
Query: 121 TPRPGRRTILDTAAPLITPVREVYCTAACYASKDAQYQCGECGKTF 166
TPRPGRRTILDTAAPLITPVREVYCTAACYASKDAQYQCGECGKTF
Sbjct: 519524 TPRPGRRTILDTAAPLITPVREVYCTAACYASKDAQYQCGECGKTF 519661
>ref|XM_001562558.1| Leishmania braziliensis MHOM/BR/75/M2904 RNA-editing complex
protein, putative (LbrM07_V2.1140) partial mRNA
Length = 1296
Score = 147 bits (370), Expect = 2e-33, Method: Composition-based stats.
Identities = 72/72 (100%), Positives = 72/72 (100%)
Frame = +1
Query: 95 MRRIAVATCQRRWLASTLLPRGGKCVTPRPGRRTILDTAAPLITPVREVYCTAACYASKD 154
MRRIAVATCQRRWLASTLLPRGGKCVTPRPGRRTILDTAAPLITPVREVYCTAACYASKD
Sbjct: 1 MRRIAVATCQRRWLASTLLPRGGKCVTPRPGRRTILDTAAPLITPVREVYCTAACYASKD 180
Query: 155 AQYQCGECGKTF 166
AQYQCGECGKTF
Sbjct: 181 AQYQCGECGKTF 216
>ref|XM_001680967.1| Leishmania major RNA-editing complex protein, putative
(LmjF07.1070) partial mRNA
Length = 1506
Score = 112 bits (279), Expect = 5e-23, Method: Composition-based stats.
Identities = 58/82 (70%), Positives = 59/82 (71%)
Frame = +1
Query: 85 PPYAFSSWLRMRRIAVATCQRRWLASTLLPRGGKCVTPRPGRRTILDTAAPLITPVREVY 144
PP F S MRRI VATCQRRWLAS +LPR GKC TP G ILDTAA L T VREV
Sbjct: 130 PPTLFPSSALMRRIGVATCQRRWLASAMLPRAGKCGTPWSGHSFILDTAASLTTAVREVR 309
Query: 145 CTAACYASKDAQYQCGECGKTF 166
TA C A KDAQYQCGECGKTF
Sbjct: 310 STAVCCAPKDAQYQCGECGKTF 375
>emb|AM502225.1| Leishmania infantum chromosome 7
Length = 591632
Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats.
Identities = 59/86 (68%), Positives = 60/86 (69%)
Frame = +3
Query: 81 E*TSPPYAFSSWLRMRRIAVATCQRRWLASTLLPRGGKCVTPRPGRRTILDTAAPLITPV 140
E T PP F S MRRI VATCQRRWLAS LPR GKC TP G ILDTAA L T +
Sbjct: 498972 ESTPPPTLFPSSALMRRIGVATCQRRWLASATLPRAGKCGTPWSGHSFILDTAASLTTAI 499151
Query: 141 REVYCTAACYASKDAQYQCGECGKTF 166
REV TA C A KDAQYQCGECGKTF
Sbjct: 499152 REVRSTAVCCAPKDAQYQCGECGKTF 499229
>gb|AY437473.1| Leishmania major MP42 gene, complete cds
Length = 1347
Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats.
Identities = 54/72 (75%), Positives = 55/72 (76%)
Frame = +1
Query: 95 MRRIAVATCQRRWLASTLLPRGGKCVTPRPGRRTILDTAAPLITPVREVYCTAACYASKD 154
MRRI VATCQRRWLAS +LPR GKC TP G ILDTAA L T VREV TA C A KD
Sbjct: 1 MRRIGVATCQRRWLASAMLPRAGKCGTPWSGHSFILDTAASLTTAVREVRSTAVCCAPKD 180
Query: 155 AQYQCGECGKTF 166
AQYQCGECGKTF
Sbjct: 181 AQYQCGECGKTF 216
>ref|XM_001463287.1| Leishmania infantum RNA-editing complex protein, putative
(LinJ07.1140) partial mRNA
Length = 1353
Score = 105 bits (261), Expect = 6e-21, Method: Composition-based stats.
Identities = 53/72 (73%), Positives = 54/72 (75%)
Frame = +1
Query: 95 MRRIAVATCQRRWLASTLLPRGGKCVTPRPGRRTILDTAAPLITPVREVYCTAACYASKD 154
MRRI VATCQRRWLAS LPR GKC TP G ILDTAA L T +REV TA C A KD
Sbjct: 1 MRRIGVATCQRRWLASATLPRAGKCGTPWSGHSFILDTAASLTTAIREVRSTAVCCAPKD 180
Query: 155 AQYQCGECGKTF 166
AQYQCGECGKTF
Sbjct: 181 AQYQCGECGKTF 216
>ref|XM_802632.1| Trypanosoma cruzi strain CL Brener RNA-editing complex protein
partial mRNA
Length = 1188
Score = 37.4 bits (85), Expect = 1.4, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
Frame = +1
Query: 95 MRRIAVATCQRRWLASTLLPRGGKCVTPRPGRRTILDTAAPLITPVREVYCTAACYASKD 154
MRRIA QR + A L PRGG P P R T+ A K
Sbjct: 1 MRRIASHLSQRTYRA--LFPRGGGFYAP------------PFTISTRFYRETSLLQAPKT 138
Query: 155 AQ--YQCGECGKTF 166
YQCGECGKTF
Sbjct: 139 ETPAYQCGECGKTF 180
>gb|AY437489.1| Trypanosoma cruzi MP42 gene, complete cds
Length = 1188
Score = 37.4 bits (85), Expect = 1.5, Method: Composition-based stats.
Identities = 31/78 (39%), Positives = 32/78 (41%), Gaps = 6/78 (7%)
Frame = +1
Query: 95 MRRIAVATCQRRWLASTLLPRGGKCVTP------RPGRRTILDTAAPLITPVREVYCTAA 148
MRRIA QR + A L PRGG P R R T L A TP
Sbjct: 1 MRRIASHLSQRTYRA--LFPRGGGFYAPPFNMSTRFYRETSLLQAPKTETPA-------- 150
Query: 149 CYASKDAQYQCGECGKTF 166
YQCGECGKTF
Sbjct: 151 --------YQCGECGKTF 180
>ref|XM_809706.1| Trypanosoma cruzi strain CL Brener RNA-editing complex protein
partial mRNA
Length = 1188
Score = 37.4 bits (85), Expect = 1.5, Method: Composition-based stats.
Identities = 31/78 (39%), Positives = 32/78 (41%), Gaps = 6/78 (7%)
Frame = +1
Query: 95 MRRIAVATCQRRWLASTLLPRGGKCVTP------RPGRRTILDTAAPLITPVREVYCTAA 148
MRRIA QR + A L PRGG P R R T L A TP
Sbjct: 1 MRRIASHLSQRTYRA--LFPRGGGFYAPPFNMSTRFYRETSLLQAPKTETPA-------- 150
Query: 149 CYASKDAQYQCGECGKTF 166
YQCGECGKTF
Sbjct: 151 --------YQCGECGKTF 180
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.336 0.142 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 706440560
Number of extensions: 12733395
Number of successful extensions: 111931
Number of sequences better than 10: 2
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 111858
Number of HSP's successfully gapped: 2
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 15 (7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (19.6 bits)
S2: 78 (34.7 bits)
Query= gi|154332491|ref|NC_009299.1|:subseq(519162,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 7
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
emb|AM494944.1| Leishmania braziliensis chromosome 7 251 7e-65
ref|XM_001562558.1| Leishmania braziliensis MHOM/BR/75/M2904 RNA... 128 7e-28
ref|XM_001680967.1| Leishmania major RNA-editing complex protein... 80 3e-13
gb|AY437473.1| Leishmania major MP42 gene, complete cds 75 5e-12
emb|AM502225.1| Leishmania infantum chromosome 7 68 1e-09
ref|XM_001463287.1| Leishmania infantum RNA-editing complex prot... 60 2e-07
>emb|AM494944.1| Leishmania braziliensis chromosome 7
Length = 586128
Score = 251 bits (640), Expect = 7e-65, Method: Composition-based stats.
Identities = 144/147 (97%), Positives = 144/147 (97%)
Frame = +3
Query: 20 HATVSVAAVSFGCSLCVCVRLPVYVCTTWRLHFIXDFSASPSAGTVAATTVAHKGLVSHV 79
HATVSVAAVSFGCSLCVCVRLPVYVCTTWRLHFI DFSASPSAGTVAATTVAHKGLVSHV
Sbjct: 519222 HATVSVAAVSFGCSLCVCVRLPVYVCTTWRLHFI*DFSASPSAGTVAATTVAHKGLVSHV 519401
Query: 80 ESKLPPLTPFRVGCAUGELPWQHVSDGGWPQRCCPAAVSAXRHGLGGAPFSIPRRLLSPQ 139
ESKLPPLTPFRVGCA GELPWQHVSDGGWPQRCCPAAVSA RHGLGGAPFSIPRRLLSPQ
Sbjct: 519402 ESKLPPLTPFRVGCA*GELPWQHVSDGGWPQRCCPAAVSA*RHGLGGAPFSIPRRLLSPQ 519581
Query: 140 SAKCTARRLATHRKMRNISVASAGRRS 166
SAKCTARRLATHRKMRNISVASAGRRS
Sbjct: 519582 SAKCTARRLATHRKMRNISVASAGRRS 519662
>ref|XM_001562558.1| Leishmania braziliensis MHOM/BR/75/M2904 RNA-editing complex
protein, putative (LbrM07_V2.1140) partial mRNA
Length = 1296
Score = 128 bits (321), Expect = 7e-28, Method: Composition-based stats.
Identities = 70/71 (98%), Positives = 70/71 (98%)
Frame = +2
Query: 96 GELPWQHVSDGGWPQRCCPAAVSAXRHGLGGAPFSIPRRLLSPQSAKCTARRLATHRKMR 155
GELPWQHVSDGGWPQRCCPAAVSA RHGLGGAPFSIPRRLLSPQSAKCTARRLATHRKMR
Sbjct: 5 GELPWQHVSDGGWPQRCCPAAVSA*RHGLGGAPFSIPRRLLSPQSAKCTARRLATHRKMR 184
Query: 156 NISVASAGRRS 166
NISVASAGRRS
Sbjct: 185 NISVASAGRRS 217
>ref|XM_001680967.1| Leishmania major RNA-editing complex protein, putative
(LmjF07.1070) partial mRNA
Length = 1506
Score = 79.7 bits (195), Expect = 3e-13, Method: Composition-based stats.
Identities = 50/82 (60%), Positives = 55/82 (67%)
Frame = +2
Query: 85 PLTPFRVGCAUGELPWQHVSDGGWPQRCCPAAVSAXRHGLGGAPFSIPRRLLSPQSAKCT 144
PL FR + L WQHVSDGG PQ+CCPA SA RHG G A FSIPRRL P SAKC
Sbjct: 131 PLRFFRAQRSCDGLVWQHVSDGGLPQQCCPAPGSAERHGQGTASFSIPRRLSQPPSAKCA 310
Query: 145 ARRLATHRKMRNISVASAGRRS 166
RR A R+MR+IS SA +RS
Sbjct: 311 PRRSAAPRRMRSISAVSAAKRS 376
>gb|AY437473.1| Leishmania major MP42 gene, complete cds
Length = 1347
Score = 75.5 bits (184), Expect = 5e-12, Method: Composition-based stats.
Identities = 46/69 (66%), Positives = 50/69 (72%)
Frame = +2
Query: 98 LPWQHVSDGGWPQRCCPAAVSAXRHGLGGAPFSIPRRLLSPQSAKCTARRLATHRKMRNI 157
L WQHVSDGG PQ+CCPA SA RHG G A FSIPRRL P SAKC RR A R+MR+I
Sbjct: 11 LVWQHVSDGGLPQQCCPAPGSAERHGQGTASFSIPRRLSQPPSAKCAPRRSAAPRRMRSI 190
Query: 158 SVASAGRRS 166
S SA +RS
Sbjct: 191 SAVSAAKRS 217
>emb|AM502225.1| Leishmania infantum chromosome 7
Length = 591632
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 42/78 (53%), Positives = 50/78 (64%)
Frame = +1
Query: 80 ESKLPPLTPFRVGCAUGELPWQHVSDGGWPQRCCPAAVSAXRHGLGGAPFSIPRRLLSPQ 139
+S+L PL FR + L WQ VSDGG PQ+ C A +A HG G A FSIPRRL P+
Sbjct: 498970 QSQLLPLRFFRALRSCDGLVWQPVSDGGLPQQRCRAPGNAEHHGQGIASFSIPRRLSQPR 499149
Query: 140 SAKCTARRLATHRKMRNI 157
SAKC RR A R+MR+I
Sbjct: 499150 SAKCALRRSAAPRRMRSI 499203
>ref|XM_001463287.1| Leishmania infantum RNA-editing complex protein, putative
(LinJ07.1140) partial mRNA
Length = 1353
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 36/60 (60%), Positives = 41/60 (68%)
Frame = +2
Query: 98 LPWQHVSDGGWPQRCCPAAVSAXRHGLGGAPFSIPRRLLSPQSAKCTARRLATHRKMRNI 157
L WQ VSDGG PQ+ C A +A HG G A FSIPRRL P+SAKC RR A R+MR+I
Sbjct: 11 LVWQPVSDGGLPQQRCRAPGNAEHHGQGIASFSIPRRLSQPRSAKCALRRSAAPRRMRSI 190
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.332 0.138 3.61e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 646086036
Number of extensions: 13183129
Number of successful extensions: 369995
Number of sequences better than 10: 4
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 361701
Number of HSP's successfully gapped: 5
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 15 (7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.0 bits)
S2: 78 (34.7 bits)
Query= gi|154332491|ref|NC_009299.1|:subseq(573554,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 7
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
ref|XM_001562569.1| Leishmania braziliensis MHOM/BR/75/M2904 hyp... 341 6e-92
emb|AM494944.1| Leishmania braziliensis chromosome 7 341 6e-92
gb|CP000078.1| Leishmania major strain Friedlin chromosome 2, co... 131 6e-29
ref|XM_817139.1| Leishmania major hypothetical protein, conserve... 131 6e-29
ref|XM_001462685.1| Leishmania infantum JPCM5 hypothetical prote... 128 5e-28
emb|AM502220.1| Leishmania infantum chromosome 2 128 5e-28
>ref|XM_001562569.1| Leishmania braziliensis MHOM/BR/75/M2904 hypothetical protein,
conserved (LbrM07_V2.1270) partial mRNA
Length = 3909
Score = 341 bits (874), Expect = 6e-92, Method: Composition-based stats.
Identities = 166/166 (100%), Positives = 166/166 (100%)
Frame = +1
Query: 1 AAAHRTKKEWSADPRGRESLLPFPVPSSAEERGRLWQELQADPTRIGPGGATEEISVAVS 60
AAAHRTKKEWSADPRGRESLLPFPVPSSAEERGRLWQELQADPTRIGPGGATEEISVAVS
Sbjct: 871 AAAHRTKKEWSADPRGRESLLPFPVPSSAEERGRLWQELQADPTRIGPGGATEEISVAVS 1050
Query: 61 GKWGDFRSYLCDDPPNATPVAEYYLDPVRVSLLDHMNGGKQGRPAPSVCDGCAFHCVHPR 120
GKWGDFRSYLCDDPPNATPVAEYYLDPVRVSLLDHMNGGKQGRPAPSVCDGCAFHCVHPR
Sbjct: 1051 GKWGDFRSYLCDDPPNATPVAEYYLDPVRVSLLDHMNGGKQGRPAPSVCDGCAFHCVHPR 1230
Query: 121 LVRGSCAGRTGVESDASAESCDSGDAAISWAVSLEDVDAGLVHVPS 166
LVRGSCAGRTGVESDASAESCDSGDAAISWAVSLEDVDAGLVHVPS
Sbjct: 1231 LVRGSCAGRTGVESDASAESCDSGDAAISWAVSLEDVDAGLVHVPS 1368
>emb|AM494944.1| Leishmania braziliensis chromosome 7
Length = 586128
Score = 341 bits (874), Expect = 6e-92, Method: Composition-based stats.
Identities = 166/166 (100%), Positives = 166/166 (100%)
Frame = +3
Query: 1 AAAHRTKKEWSADPRGRESLLPFPVPSSAEERGRLWQELQADPTRIGPGGATEEISVAVS 60
AAAHRTKKEWSADPRGRESLLPFPVPSSAEERGRLWQELQADPTRIGPGGATEEISVAVS
Sbjct: 573555 AAAHRTKKEWSADPRGRESLLPFPVPSSAEERGRLWQELQADPTRIGPGGATEEISVAVS 573734
Query: 61 GKWGDFRSYLCDDPPNATPVAEYYLDPVRVSLLDHMNGGKQGRPAPSVCDGCAFHCVHPR 120
GKWGDFRSYLCDDPPNATPVAEYYLDPVRVSLLDHMNGGKQGRPAPSVCDGCAFHCVHPR
Sbjct: 573735 GKWGDFRSYLCDDPPNATPVAEYYLDPVRVSLLDHMNGGKQGRPAPSVCDGCAFHCVHPR 573914
Query: 121 LVRGSCAGRTGVESDASAESCDSGDAAISWAVSLEDVDAGLVHVPS 166
LVRGSCAGRTGVESDASAESCDSGDAAISWAVSLEDVDAGLVHVPS
Sbjct: 573915 LVRGSCAGRTGVESDASAESCDSGDAAISWAVSLEDVDAGLVHVPS 574052
>gb|CP000078.1| Leishmania major strain Friedlin chromosome 2, complete sequence
Length = 355714
Score = 131 bits (330), Expect = 6e-29, Method: Composition-based stats.
Identities = 82/171 (47%), Positives = 101/171 (59%), Gaps = 5/171 (2%)
Frame = -3
Query: 1 AAAHRTKKEWSADPRGRESLLPFPVPSSAEERGRLWQELQADPTRIGPGGATEEISVAVS 60
AAAHRT+KEW ADPRGRESLLPFPVP S EER RL + G EI++AV+
Sbjct: 158366 AAAHRTQKEWQADPRGRESLLPFPVPPSEEERRRLRDTSRGALRHSDGDGEAPEITIAVT 158187
Query: 61 GKWGDFRSYLCDDPPN-ATPVAEYYLDPVRVSLLDHMNGGKQGRPAPSV-CDGCAFHCVH 118
+ F SYLC D PN +T A Y+LDP+R LL + + R + C GC FHCVH
Sbjct: 158186 DQAKAFHSYLCTDVPNVSTADAIYHLDPLRALLLRQTDASAKDRAKTAARCTGCVFHCVH 158007
Query: 119 PRLVRGSCAGRTGVESDASAES-CDSGDAA--ISWAVSLEDVDAGLVHVPS 166
PRL R + +AE D G +A +SW V+LEDVDAG V+V +
Sbjct: 158006 PRLARRHGRRAAPAGARGAAEDGIDGGSSAEPLSWDVALEDVDAGHVYVTT 157854
>ref|XM_817139.1| Leishmania major hypothetical protein, conserved (LmjF02.0330)
partial mRNA
Length = 4620
Score = 131 bits (330), Expect = 6e-29, Method: Composition-based stats.
Identities = 82/171 (47%), Positives = 101/171 (59%), Gaps = 5/171 (2%)
Frame = +1
Query: 1 AAAHRTKKEWSADPRGRESLLPFPVPSSAEERGRLWQELQADPTRIGPGGATEEISVAVS 60
AAAHRT+KEW ADPRGRESLLPFPVP S EER RL + G EI++AV+
Sbjct: 1411 AAAHRTQKEWQADPRGRESLLPFPVPPSEEERRRLRDTSRGALRHSDGDGEAPEITIAVT 1590
Query: 61 GKWGDFRSYLCDDPPN-ATPVAEYYLDPVRVSLLDHMNGGKQGRPAPSV-CDGCAFHCVH 118
+ F SYLC D PN +T A Y+LDP+R LL + + R + C GC FHCVH
Sbjct: 1591 DQAKAFHSYLCTDVPNVSTADAIYHLDPLRALLLRQTDASAKDRAKTAARCTGCVFHCVH 1770
Query: 119 PRLVRGSCAGRTGVESDASAES-CDSGDAA--ISWAVSLEDVDAGLVHVPS 166
PRL R + +AE D G +A +SW V+LEDVDAG V+V +
Sbjct: 1771 PRLARRHGRRAAPAGARGAAEDGIDGGSSAEPLSWDVALEDVDAGHVYVTT 1923
>ref|XM_001462685.1| Leishmania infantum JPCM5 hypothetical protein, conserved
(LinJ02.0250) partial mRNA
Length = 4617
Score = 128 bits (322), Expect = 5e-28, Method: Composition-based stats.
Identities = 83/171 (48%), Positives = 102/171 (59%), Gaps = 5/171 (2%)
Frame = +1
Query: 1 AAAHRTKKEWSADPRGRESLLPFPVPSSAEERGRLWQELQADPTRIGPGGATEEISVAVS 60
AAAHRT++EW ADPRGRE LLPFPVP S EER RL + P + G EI++AV+
Sbjct: 1402 AAAHRTQQEWQADPRGREPLLPFPVPPSEEERRRLRDTSRVAPYHLDGDGEAPEITIAVT 1581
Query: 61 GKWGDFRSYLCDDPPN-ATPVAEYYLDPVRVSLLDHMNGGKQGRP-APSVCDGCAFHCVH 118
+ F SYLC D PN +T A Y+LDP+R LL + + R A + C GC FHCVH
Sbjct: 1582 DQTKAFHSYLCTDVPNVSTADAIYHLDPLRALLLKRTDASAKDRAMAAARCSGCIFHCVH 1761
Query: 119 PRLVRGSCAGRTGVESDASAE-SCDSGDAA--ISWAVSLEDVDAGLVHVPS 166
PRL R ++ SAE D G +A SW V+LEDVDAG V V +
Sbjct: 1762 PRLARRHRRRAAPADARGSAEDEVDGGSSAEPSSWDVALEDVDAGHVRVAT 1914
>emb|AM502220.1| Leishmania infantum chromosome 2
Length = 327119
Score = 128 bits (322), Expect = 5e-28, Method: Composition-based stats.
Identities = 83/171 (48%), Positives = 102/171 (59%), Gaps = 5/171 (2%)
Frame = -2
Query: 1 AAAHRTKKEWSADPRGRESLLPFPVPSSAEERGRLWQELQADPTRIGPGGATEEISVAVS 60
AAAHRT++EW ADPRGRE LLPFPVP S EER RL + P + G EI++AV+
Sbjct: 121984 AAAHRTQQEWQADPRGREPLLPFPVPPSEEERRRLRDTSRVAPYHLDGDGEAPEITIAVT 121805
Query: 61 GKWGDFRSYLCDDPPN-ATPVAEYYLDPVRVSLLDHMNGGKQGRP-APSVCDGCAFHCVH 118
+ F SYLC D PN +T A Y+LDP+R LL + + R A + C GC FHCVH
Sbjct: 121804 DQTKAFHSYLCTDVPNVSTADAIYHLDPLRALLLKRTDASAKDRAMAAARCSGCIFHCVH 121625
Query: 119 PRLVRGSCAGRTGVESDASAE-SCDSGDAA--ISWAVSLEDVDAGLVHVPS 166
PRL R ++ SAE D G +A SW V+LEDVDAG V V +
Sbjct: 121624 PRLARRHRRRAAPADARGSAEDEVDGGSSAEPSSWDVALEDVDAGHVRVAT 121472
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.315 0.133 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 708380849
Number of extensions: 13588102
Number of successful extensions: 65721
Number of sequences better than 10: 3
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 65696
Number of HSP's successfully gapped: 3
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 16 (7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 78 (34.7 bits)
Query= gi|154332491|ref|NC_009299.1|:subseq(573554,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 7
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
ref|XM_001562569.1| Leishmania braziliensis MHOM/BR/75/M2904 hyp... 240 1e-61
emb|AM494944.1| Leishmania braziliensis chromosome 7 240 1e-61
>ref|XM_001562569.1| Leishmania braziliensis MHOM/BR/75/M2904 hypothetical protein,
conserved (LbrM07_V2.1270) partial mRNA
Length = 3909
Score = 240 bits (612), Expect = 1e-61, Method: Composition-based stats.
Identities = 146/166 (87%), Positives = 146/166 (87%)
Frame = +2
Query: 1 LLLTEQRRNGLPTHAVANLSCLSQCPLPQRSEGVFGRSYRQTPHGXXXXXXXRRSVLPSV 60
LLLTEQRRNGLPTHAVANLSCLSQCPLPQRSEGVFGRSYRQTPHG RRSVLPSV
Sbjct: 872 LLLTEQRRNGLPTHAVANLSCLSQCPLPQRSEGVFGRSYRQTPHGLALAALLRRSVLPSV 1051
Query: 61 ANGVTSGATCAMILRMRRPLRSITWTRCACHCSTTUTGGNRGALHRRSVTAVLFTACIHA 120
ANGVTSGATCAMILRMRRPLRSITWTRCACHCSTT TGGNRGALHRRSVTAVLFTACIHA
Sbjct: 1052 ANGVTSGATCAMILRMRRPLRSITWTRCACHCSTT*TGGNRGALHRRSVTAVLFTACIHA 1231
Query: 121 SCEAAVRAGLALRVMPVRRAATVXXXXXXXXXXXXTWMLDLSMSPL 166
SCEAAVRAGLALRVMPVRRAATV TWMLDLSMSPL
Sbjct: 1232 SCEAAVRAGLALRVMPVRRAATVGMRRFRGRFLLRTWMLDLSMSPL 1369
>emb|AM494944.1| Leishmania braziliensis chromosome 7
Length = 586128
Score = 240 bits (612), Expect = 1e-61, Method: Composition-based stats.
Identities = 146/166 (87%), Positives = 146/166 (87%)
Frame = +1
Query: 1 LLLTEQRRNGLPTHAVANLSCLSQCPLPQRSEGVFGRSYRQTPHGXXXXXXXRRSVLPSV 60
LLLTEQRRNGLPTHAVANLSCLSQCPLPQRSEGVFGRSYRQTPHG RRSVLPSV
Sbjct: 573556 LLLTEQRRNGLPTHAVANLSCLSQCPLPQRSEGVFGRSYRQTPHGLALAALLRRSVLPSV 573735
Query: 61 ANGVTSGATCAMILRMRRPLRSITWTRCACHCSTTUTGGNRGALHRRSVTAVLFTACIHA 120
ANGVTSGATCAMILRMRRPLRSITWTRCACHCSTT TGGNRGALHRRSVTAVLFTACIHA
Sbjct: 573736 ANGVTSGATCAMILRMRRPLRSITWTRCACHCSTT*TGGNRGALHRRSVTAVLFTACIHA 573915
Query: 121 SCEAAVRAGLALRVMPVRRAATVXXXXXXXXXXXXTWMLDLSMSPL 166
SCEAAVRAGLALRVMPVRRAATV TWMLDLSMSPL
Sbjct: 573916 SCEAAVRAGLALRVMPVRRAATVGMRRFRGRFLLRTWMLDLSMSPL 574053
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.326 0.132 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 525514807
Number of extensions: 7494710
Number of successful extensions: 63233
Number of sequences better than 10: 1
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 63201
Number of HSP's successfully gapped: 1
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 15 (7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.0 bits)
S2: 78 (34.7 bits)
Query= gi|154332491|ref|NC_009299.1|:subseq(573554,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 7
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
ref|XM_001562569.1| Leishmania braziliensis MHOM/BR/75/M2904 hyp... 265 5e-69
emb|AM494944.1| Leishmania braziliensis chromosome 7 265 5e-69
>ref|XM_001562569.1| Leishmania braziliensis MHOM/BR/75/M2904 hypothetical protein,
conserved (LbrM07_V2.1270) partial mRNA
Length = 3909
Score = 265 bits (676), Expect = 5e-69, Method: Composition-based stats.
Identities = 159/166 (95%), Positives = 159/166 (95%)
Frame = +3
Query: 1 CCSPNKEGMVCRPTRSRISLAFPSALFRRGARASLAGATGRPHTDWPWRRYUGDQCCRQW 60
CCSPNKEGMVCRPTRSRISLAFPSALFRRGARASLAGATGRPHTDWPWRRY GDQCCRQW
Sbjct: 873 CCSPNKEGMVCRPTRSRISLAFPSALFRRGARASLAGATGRPHTDWPWRRY*GDQCCRQW 1052
Query: 61 QMGULPELPVRUSSECDARCGVLPGPGARVTARPHERGETGAPCTVGLURLCFSLRASTP 120
QMG LPELPVR SSECDARCGVLPGPGARVTARPHERGETGAPCTVGL RLCFSLRASTP
Sbjct: 1053 QMG*LPELPVR*SSECDARCGVLPGPGARVTARPHERGETGAPCTVGL*RLCFSLRASTP 1232
Query: 121 RARQLCGPDWRUEUCQCGELRQWGCGDFVGGFSUGRGCWTCPCPLW 166
RARQLCGPDWR E CQCGELRQWGCGDFVGGFS GRGCWTCPCPLW
Sbjct: 1233 RARQLCGPDWR*E*CQCGELRQWGCGDFVGGFS*GRGCWTCPCPLW 1370
>emb|AM494944.1| Leishmania braziliensis chromosome 7
Length = 586128
Score = 265 bits (676), Expect = 5e-69, Method: Composition-based stats.
Identities = 159/166 (95%), Positives = 159/166 (95%)
Frame = +2
Query: 1 CCSPNKEGMVCRPTRSRISLAFPSALFRRGARASLAGATGRPHTDWPWRRYUGDQCCRQW 60
CCSPNKEGMVCRPTRSRISLAFPSALFRRGARASLAGATGRPHTDWPWRRY GDQCCRQW
Sbjct: 573557 CCSPNKEGMVCRPTRSRISLAFPSALFRRGARASLAGATGRPHTDWPWRRY*GDQCCRQW 573736
Query: 61 QMGULPELPVRUSSECDARCGVLPGPGARVTARPHERGETGAPCTVGLURLCFSLRASTP 120
QMG LPELPVR SSECDARCGVLPGPGARVTARPHERGETGAPCTVGL RLCFSLRASTP
Sbjct: 573737 QMG*LPELPVR*SSECDARCGVLPGPGARVTARPHERGETGAPCTVGL*RLCFSLRASTP 573916
Query: 121 RARQLCGPDWRUEUCQCGELRQWGCGDFVGGFSUGRGCWTCPCPLW 166
RARQLCGPDWR E CQCGELRQWGCGDFVGGFS GRGCWTCPCPLW
Sbjct: 573917 RARQLCGPDWR*E*CQCGELRQWGCGDFVGGFS*GRGCWTCPCPLW 574054
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.326 0.141 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 904422463
Number of extensions: 19425573
Number of successful extensions: 208754
Number of sequences better than 10: 84
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 208299
Number of HSP's successfully gapped: 129
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 15 (7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.0 bits)
S2: 78 (34.7 bits)
Query= gi|154332708|ref|NC_009300.1|:subseq(380675,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 8
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
ref|XM_001562102.1| Leishmania braziliensis MHOM/BR/75/M2904 hyp... 204 1e-50
emb|AM494945.1| Leishmania braziliensis chromosome 8 204 1e-50
ref|XM_001463406.1| Leishmania infantum JPCM5 hypothetical prote... 131 6e-29
emb|AM502226.1| Leishmania infantum chromosome 8 131 6e-29
ref|XM_001681096.1| Leishmania major hypothetical protein, conse... 125 5e-27
>ref|XM_001562102.1| Leishmania braziliensis MHOM/BR/75/M2904 hypothetical protein,
conserved (LbrM08_V2.0960) partial mRNA
Length = 3747
Score = 204 bits (518), Expect = 1e-50, Method: Composition-based stats.
Identities = 136/166 (81%), Positives = 136/166 (81%)
Frame = +3
Query: 1 TGDACRLLPARQNSAHGQHRRRGAVRHGQRHSHSIRFVEPTRHGARCLRRHADRHGGRVP 60
TGDACRLLPARQNSAHGQHRRRGAVRHGQRHSHSIRFVEPTRHGARCLRRHADRHGGRVP
Sbjct: 645 TGDACRLLPARQNSAHGQHRRRGAVRHGQRHSHSIRFVEPTRHGARCLRRHADRHGGRVP 824
Query: 61 CCHAVLQQRGHPPTHASGGWXAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXVQVLLLQED 120
CCHAVLQQRGHPPTHASGGW AV VQVLLLQED
Sbjct: 825 CCHAVLQQRGHPPTHASGGW*AVRRHRVGRRRPPRRHCRRRLRVLRECAARVQVLLLQED 1004
Query: 121 RRLCLHGARQDRRECHVLECPHKRAEDEERAWLTVPXRVEGRLRAG 166
RRLCLHGARQDRRECHVLECPHKRAEDEERAWLTVP RVEGRLRAG
Sbjct: 1005RRLCLHGARQDRRECHVLECPHKRAEDEERAWLTVP*RVEGRLRAG 1142
>emb|AM494945.1| Leishmania braziliensis chromosome 8
Length = 470112
Score = 204 bits (518), Expect = 1e-50, Method: Composition-based stats.
Identities = 136/166 (81%), Positives = 136/166 (81%)
Frame = +3
Query: 1 TGDACRLLPARQNSAHGQHRRRGAVRHGQRHSHSIRFVEPTRHGARCLRRHADRHGGRVP 60
TGDACRLLPARQNSAHGQHRRRGAVRHGQRHSHSIRFVEPTRHGARCLRRHADRHGGRVP
Sbjct: 380676 TGDACRLLPARQNSAHGQHRRRGAVRHGQRHSHSIRFVEPTRHGARCLRRHADRHGGRVP 380855
Query: 61 CCHAVLQQRGHPPTHASGGWXAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXVQVLLLQED 120
CCHAVLQQRGHPPTHASGGW AV VQVLLLQED
Sbjct: 380856 CCHAVLQQRGHPPTHASGGW*AVRRHRVGRRRPPRRHCRRRLRVLRECAARVQVLLLQED 381035
Query: 121 RRLCLHGARQDRRECHVLECPHKRAEDEERAWLTVPXRVEGRLRAG 166
RRLCLHGARQDRRECHVLECPHKRAEDEERAWLTVP RVEGRLRAG
Sbjct: 381036 RRLCLHGARQDRRECHVLECPHKRAEDEERAWLTVP*RVEGRLRAG 381173
>ref|XM_001463406.1| Leishmania infantum JPCM5 hypothetical protein, conserved
(LinJ08.1090) partial mRNA
Length = 3744
Score = 131 bits (330), Expect = 6e-29, Method: Composition-based stats.
Identities = 91/160 (56%), Positives = 99/160 (61%)
Frame = +3
Query: 7 LLPARQNSAHGQHRRRGAVRHGQRHSHSIRFVEPTRHGARCLRRHADRHGGRVPCCHAVL 66
LLP RQ++A QHR R A HGQR S S+ FVE RHG+RC R HA GGR CCHAVL
Sbjct: 663 LLPVRQDAADDQHR*RDAAPHGQRLSRSLCFVEFFRHGSRCGRAHAGHRGGRAHCCHAVL 842
Query: 67 QQRGHPPTHASGGWXAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXVQVLLLQEDRRLCLH 126
QQRG P HA+GGW AV +QVLLLQED RLCLH
Sbjct: 843 QQRGRSPAHAAGGW*AVRRDHVGGWRPARRHCRGLLRVLRECAAQLQVLLLQEDGRLCLH 1022
Query: 127 GARQDRRECHVLECPHKRAEDEERAWLTVPXRVEGRLRAG 166
ARQ R E HVLEC HKR +DEERAWL VP RV+G LRAG
Sbjct: 1023DARQSRGERHVLECQHKRTQDEERAWLAVP*RVQGCLRAG 1142
>emb|AM502226.1| Leishmania infantum chromosome 8
Length = 511966
Score = 131 bits (330), Expect = 6e-29, Method: Composition-based stats.
Identities = 91/160 (56%), Positives = 99/160 (61%)
Frame = +1
Query: 7 LLPARQNSAHGQHRRRGAVRHGQRHSHSIRFVEPTRHGARCLRRHADRHGGRVPCCHAVL 66
LLP RQ++A QHR R A HGQR S S+ FVE RHG+RC R HA GGR CCHAVL
Sbjct: 456985 LLPVRQDAADDQHR*RDAAPHGQRLSRSLCFVEFFRHGSRCGRAHAGHRGGRAHCCHAVL 457164
Query: 67 QQRGHPPTHASGGWXAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXVQVLLLQEDRRLCLH 126
QQRG P HA+GGW AV +QVLLLQED RLCLH
Sbjct: 457165 QQRGRSPAHAAGGW*AVRRDHVGGWRPARRHCRGLLRVLRECAAQLQVLLLQEDGRLCLH 457344
Query: 127 GARQDRRECHVLECPHKRAEDEERAWLTVPXRVEGRLRAG 166
ARQ R E HVLEC HKR +DEERAWL VP RV+G LRAG
Sbjct: 457345 DARQSRGERHVLECQHKRTQDEERAWLAVP*RVQGCLRAG 457464
>ref|XM_001681096.1| Leishmania major hypothetical protein, conserved (LmjF08.1190)
partial mRNA
Length = 3747
Score = 125 bits (314), Expect = 5e-27, Method: Composition-based stats.
Identities = 88/160 (55%), Positives = 98/160 (61%)
Frame = +3
Query: 7 LLPARQNSAHGQHRRRGAVRHGQRHSHSIRFVEPTRHGARCLRRHADRHGGRVPCCHAVL 66
LLP RQ++A QHRRR A HGQR S S+ FVE RHG+RC R HA GGR CCHAVL
Sbjct: 663 LLPVRQDAADDQHRRRDAAPHGQRLSRSLCFVESFRHGSRCRRAHAGHRGGRAHCCHAVL 842
Query: 67 QQRGHPPTHASGGWXAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXVQVLLLQEDRRLCLH 126
QQRG P HA+GGW AV +QVLLLQED RL L+
Sbjct: 843 QQRGRSPAHAAGGW*AVRRDHVGGWRPARRHRRRLLRVLCECAAQLQVLLLQEDGRLRLY 1022
Query: 127 GARQDRRECHVLECPHKRAEDEERAWLTVPXRVEGRLRAG 166
A Q R E HVLEC HKRA+DE RAWL VP R++G LRAG
Sbjct: 1023DAGQSRGERHVLECQHKRAQDEARAWLAVP*RMQGCLRAG 1142
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.333 0.143 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 640567601
Number of extensions: 10396120
Number of successful extensions: 133768
Number of sequences better than 10: 30
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 132574
Number of HSP's successfully gapped: 54
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 15 (7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (19.6 bits)
S2: 78 (34.7 bits)
Query= gi|154332708|ref|NC_009300.1|:subseq(380675,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 8
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
ref|XM_001562102.1| Leishmania braziliensis MHOM/BR/75/M2904 hyp... 349 2e-94
emb|AM494945.1| Leishmania braziliensis chromosome 8 349 2e-94
ref|XM_001681096.1| Leishmania major hypothetical protein, conse... 286 2e-75
ref|XM_001463406.1| Leishmania infantum JPCM5 hypothetical prote... 277 9e-73
emb|AM502226.1| Leishmania infantum chromosome 8 277 9e-73
ref|XM_803142.1| Trypanosoma cruzi strain CL Brener hypothetical... 211 7e-53
ref|XM_806494.1| Trypanosoma cruzi strain CL Brener hypothetical... 211 7e-53
ref|XM_839882.1| Trypanosoma brucei TREU927 hypothetical protein... 180 1e-43
gb|AC104488.4| Trypanosoma brucei chromosome 5 clone RPCI93-26K5... 180 1e-43
ref|XM_419970.2| PREDICTED: Gallus gallus similar to KIAA1336 pr... 160 1e-37
ref|XM_001638388.1| Nematostella vectensis predicted protein (NE... 160 1e-37
ref|XM_001176904.1| PREDICTED: Strongylocentrotus purpuratus hyp... 160 1e-37
ref|XM_778124.2| PREDICTED: Strongylocentrotus purpuratus hypoth... 160 1e-37
ref|XM_002231338.1| Branchiostoma floridae hypothetical protein ... 159 3e-37
ref|XM_002200767.1| Branchiostoma floridae hypothetical protein ... 159 3e-37
ref|XM_001107482.1| PREDICTED: Macaca mulatta WD repeat domain 3... 156 2e-36
ref|XR_054010.1| PREDICTED: Taeniopygia guttata misc_RNA (LOC100... 155 3e-36
ref|XM_001511411.1| PREDICTED: Ornithorhynchus anatinus similar ... 155 4e-36
gb|EF599100.1| Chlamydomonas reinhardtii intraflagellar transpor... 155 5e-36
ref|XM_001701969.1| Chlamydomonas reinhardtii flagellar associat... 155 5e-36
ref|XM_515315.2| PREDICTED: Pan troglodytes WD repeat domain 35 ... 154 7e-36
dbj|AB385451.1| Synthetic construct DNA, clone: pF1KA1336, Homo ... 154 7e-36
ref|NM_001006657.1| Homo sapiens WD repeat domain 35 (WDR35), tr... 154 7e-36
dbj|AB037757.2| Homo sapiens mRNA for KIAA1336 protein, partial cds 154 7e-36
dbj|AK315094.1| Homo sapiens cDNA, FLJ96052 154 8e-36
ref|NM_020779.3| Homo sapiens WD repeat domain 35 (WDR35), trans... 154 8e-36
dbj|AK122917.1| Homo sapiens cDNA FLJ16596 fis, clone TESTI40056... 154 8e-36
gb|BC036659.2| Homo sapiens WD repeat domain 35, mRNA (cDNA clon... 154 8e-36
ref|XM_532884.2| PREDICTED: Canis familiaris similar to WD repea... 153 2e-35
dbj|AK091205.1| Homo sapiens cDNA FLJ33886 fis, clone CTONG20073... 152 3e-35
ref|NM_001145589.1| Danio rerio im:7159945 (im:7159945), mRNA 152 3e-35
ref|XM_001072062.1| PREDICTED: Rattus norvegicus WD repeat domai... 152 5e-35
gb|EF613262.1| Rattus norvegicus naofen mRNA, complete cds 152 5e-35
ref|XM_001503372.2| PREDICTED: Equus caballus similar to WD repe... 150 1e-34
dbj|AK083971.1| Mus musculus 12 days embryo spinal ganglion cDNA... 150 2e-34
dbj|AK029896.1| Mus musculus adult male testis cDNA, RIKEN full-... 150 2e-34
gb|BC056925.1| Mus musculus WD repeat domain 35, mRNA (cDNA clon... 150 2e-34
dbj|AK173151.1| Mus musculus mRNA for mKIAA1336 protein 150 2e-34
dbj|AK031061.1| Mus musculus 13 days embryo forelimb cDNA, RIKEN... 149 3e-34
dbj|AK015490.1| Mus musculus adult male testis cDNA, RIKEN full-... 149 3e-34
dbj|AK053724.1| Mus musculus 0 day neonate eyeball cDNA, RIKEN f... 148 7e-34
ref|XM_002114477.1| Trichoplax adhaerens hypothetical protein, mRNA 146 2e-33
ref|XM_001749392.1| Monosiga brevicollis MX1 predicted protein M... 144 7e-33
ref|XM_394812.2| PREDICTED: Apis mellifera similar to WD repeat ... 140 1e-31
ref|XM_002131498.1| PREDICTED: Ciona intestinalis similar to WD ... 138 6e-31
ref|XM_001607716.1| PREDICTED: Nasonia vitripennis similar to rC... 137 1e-30
ref|XM_001659501.1| Aedes aegypti wd-repeat protein partial mRNA 136 2e-30
ref|XM_002160231.1| PREDICTED: Hydra magnipapillata similar to W... 136 2e-30
ref|XM_309945.3| Anopheles gambiae str. PEST AGAP011562-PA (AgaP... 136 3e-30
ref|XM_001862976.1| Culex quinquefasciatus WD repeat protein 35,... 135 5e-30
ref|XM_002034935.1| Drosophila sechellia GM14175 (Dsec\GM14175),... 129 2e-28
ref|XM_001955936.1| Drosophila ananassae GF24968 (Dana\GF24968),... 129 2e-28
ref|XM_002093147.1| Drosophila yakuba GE20921 (Dyak\GE20921), mRNA 129 5e-28
gb|FJ636651.1| Synthetic construct Drosophila melanogaster clone... 127 9e-28
gb|FJ631885.1| Synthetic construct Drosophila melanogaster clone... 127 9e-28
ref|NM_139396.3| Drosophila melanogaster Oseg4 (Oseg4), mRNA 127 9e-28
gb|AY061373.1| Drosophila melanogaster LD29485 full length cDNA 127 9e-28
ref|XM_001971154.1| Drosophila erecta GG14567 (Dere\GG14567), mRNA 122 4e-26
ref|XM_001948856.1| PREDICTED: Acyrthosiphon pisum similar to WD... 121 7e-26
ref|XM_002025578.1| Drosophila persimilis GL20799 (Dper\GL20799)... 119 2e-25
ref|XM_002062442.1| Drosophila willistoni GK17561 (Dwil\GK17561)... 119 3e-25
ref|XM_001352719.2| Drosophila pseudoobscura pseudoobscura GA152... 119 3e-25
ref|XM_001752789.1| Physcomitrella patens subsp. patens intrafla... 119 4e-25
ref|XM_001983152.1| Drosophila grimshawi GH15725 (Dgri\GH15725),... 119 4e-25
ref|XM_001009043.1| Tetrahymena thermophila SB210 hypothetical p... 118 5e-25
ref|XM_001370317.1| PREDICTED: Monodelphis domestica hypothetica... 116 3e-24
ref|XM_002060252.1| Drosophila virilis GJ16079 (Dvir\GJ16079), mRNA 114 1e-23
ref|XM_002007118.1| Drosophila mojavensis GI12779 (Dmoj\GI12779)... 111 8e-23
gb|AE014296.4| Drosophila melanogaster chromosome 3L, complete s... 102 2e-22
gb|AC005557.1|AC005557 Drosophila melanogaster, chromosome 3L, r... 102 3e-22
gb|AC105264.3| Drosophila melanogaster 3L BAC RP98-17K18 (Roswel... 102 3e-22
gb|AC010118.8| Drosophila melanogaster 3L BAC RP98-10D15 (Roswel... 102 3e-22
ref|XM_001423420.1| Paramecium tetraurelia hypothetical protein ... 108 6e-22
ref|XM_001346844.1| Paramecium tetraurelia strain d4-2 108 6e-22
emb|CR548612.1| Paramecium tetraurelia macronuclear largest chro... 108 6e-22
ref|XM_001458287.1| Paramecium tetraurelia hypothetical protein ... 107 9e-22
emb|AL935163.7| Zebrafish DNA sequence from clone CH211-206K20 i... 70 2e-19
ref|XM_001676768.1| Caenorhabditis briggsae hypothetical protein... 89 3e-16
ref|NM_076539.3| Caenorhabditis elegans IntraFlagellar Transport... 84 2e-14
ref|XM_233960.4| PREDICTED: Rattus norvegicus WD repeat domain 3... 75 6e-12
gb|AC182751.1| Gasterosteus aculeatus clone VMRC26-154K14, compl... 73 3e-11
gb|AC110376.4| Mus musculus chromosome 12 clone RP23-441E7, comp... 67 3e-09
gb|AC140051.10| Mus musculus chromosome 12, clone RP23-296J15, c... 67 3e-09
gb|AC151592.2| Nematostella vectensis clone JGIAFIN-297A9, compl... 65 6e-09
gb|AC079145.4| Homo sapiens BAC clone RP11-42N12 from 2, complet... 65 7e-09
gb|AC198294.3| MACACA MULATTA BAC clone CH250-491I20 from chromo... 65 9e-09
ref|XM_001583222.1| Trichomonas vaginalis G3 WD repeat protein, ... 65 9e-09
ref|XM_001581461.1| Trichomonas vaginalis G3 WD repeat protein, ... 64 1e-08
ref|NM_001044838.2| Danio rerio si:ch211-51e12.5 (si:ch211-51e12... 44 0.015
ref|NM_001045095.1| Danio rerio si:ch211-222h17.4 (si:ch211-222h... 44 0.015
gb|AC108497.1| Caenorhabditis briggsae cosmid CB010P02, complete... 41 0.11
ref|XM_686015.2| PREDICTED: Danio rerio similar to tubby like pr... 39 0.56
gb|U40410.1| Caenorhabditis elegans cosmid C54G7, complete sequence 36 3.5
ref|XM_001707133.1| Giardia lamblia ATCC 50803 Tubby superfamily... 36 4.7
ref|XM_001952806.1| PREDICTED: Acyrthosiphon pisum similar to Tu... 35 5.8
>ref|XM_001562102.1| Leishmania braziliensis MHOM/BR/75/M2904 hypothetical protein,
conserved (LbrM08_V2.0960) partial mRNA
Length = 3747
Score = 349 bits (896), Expect = 2e-94, Method: Composition-based stats.
Identities = 166/166 (100%), Positives = 166/166 (100%)
Frame = +1
Query: 1 LATLAVCYQHGRIQLMASIGDEAPYVMDSDIPIQFVSWNPHGTVLAVSAVMPTATVDASL 60
LATLAVCYQHGRIQLMASIGDEAPYVMDSDIPIQFVSWNPHGTVLAVSAVMPTATVDASL
Sbjct: 646 LATLAVCYQHGRIQLMASIGDEAPYVMDSDIPIQFVSWNPHGTVLAVSAVMPTATVDASL 825
Query: 61 VVTQFFSNEGIHLRTLRVAGKQCGGIAWEGGGLRVAIAVDASVYFANVRPEYKYCYFKKT 120
VVTQFFSNEGIHLRTLRVAGKQCGGIAWEGGGLRVAIAVDASVYFANVRPEYKYCYFKKT
Sbjct: 826 VVTQFFSNEGIHLRTLRVAGKQCGGIAWEGGGLRVAIAVDASVYFANVRPEYKYCYFKKT 1005
Query: 121 VVFAFTVPDKIEESVMFWNVHTNERRMKSVRGLQYLSAWKDACVLV 166
VVFAFTVPDKIEESVMFWNVHTNERRMKSVRGLQYLSAWKDACVLV
Sbjct: 1006VVFAFTVPDKIEESVMFWNVHTNERRMKSVRGLQYLSAWKDACVLV 1143
>emb|AM494945.1| Leishmania braziliensis chromosome 8
Length = 470112
Score = 349 bits (896), Expect = 2e-94, Method: Composition-based stats.
Identities = 166/166 (100%), Positives = 166/166 (100%)
Frame = +1
Query: 1 LATLAVCYQHGRIQLMASIGDEAPYVMDSDIPIQFVSWNPHGTVLAVSAVMPTATVDASL 60
LATLAVCYQHGRIQLMASIGDEAPYVMDSDIPIQFVSWNPHGTVLAVSAVMPTATVDASL
Sbjct: 380677 LATLAVCYQHGRIQLMASIGDEAPYVMDSDIPIQFVSWNPHGTVLAVSAVMPTATVDASL 380856
Query: 61 VVTQFFSNEGIHLRTLRVAGKQCGGIAWEGGGLRVAIAVDASVYFANVRPEYKYCYFKKT 120
VVTQFFSNEGIHLRTLRVAGKQCGGIAWEGGGLRVAIAVDASVYFANVRPEYKYCYFKKT
Sbjct: 380857 VVTQFFSNEGIHLRTLRVAGKQCGGIAWEGGGLRVAIAVDASVYFANVRPEYKYCYFKKT 381036
Query: 121 VVFAFTVPDKIEESVMFWNVHTNERRMKSVRGLQYLSAWKDACVLV 166
VVFAFTVPDKIEESVMFWNVHTNERRMKSVRGLQYLSAWKDACVLV
Sbjct: 381037 VVFAFTVPDKIEESVMFWNVHTNERRMKSVRGLQYLSAWKDACVLV 381174
>ref|XM_001681096.1| Leishmania major hypothetical protein, conserved (LmjF08.1190)
partial mRNA
Length = 3747
Score = 286 bits (731), Expect = 2e-75, Method: Composition-based stats.
Identities = 133/166 (80%), Positives = 146/166 (87%)
Frame = +1
Query: 1 LATLAVCYQHGRIQLMASIGDEAPYVMDSDIPIQFVSWNPHGTVLAVSAVMPTATVDASL 60
LATLA+CYQ G++QLM SIGDE P +MDSD P+ FVSWNP GTVLAV+A+ P DA
Sbjct: 646 LATLAICYQSGKMQLMTSIGDETPRLMDSDFPVHFVSWNPSGTVLAVAALTPATEEDAPT 825
Query: 61 VVTQFFSNEGIHLRTLRVAGKQCGGIAWEGGGLRVAIAVDASVYFANVRPEYKYCYFKKT 120
VVTQFFSNEG+HLRTLRVAGKQCGGI WEGGGLRVAIAVD+SVYFANVRP YKYCYFKKT
Sbjct: 826 VVTQFFSNEGVHLRTLRVAGKQCGGITWEGGGLRVAIAVDSSVYFANVRPSYKYCYFKKT 1005
Query: 121 VVFAFTVPDKIEESVMFWNVHTNERRMKSVRGLQYLSAWKDACVLV 166
VVFA T+PDK+EESVMFWNV+TNERR K VRGLQYL+A KDACVLV
Sbjct: 1006VVFACTMPDKVEESVMFWNVNTNERRTKRVRGLQYLNACKDACVLV 1143
>ref|XM_001463406.1| Leishmania infantum JPCM5 hypothetical protein, conserved
(LinJ08.1090) partial mRNA
Length = 3744
Score = 277 bits (708), Expect = 9e-73, Method: Composition-based stats.
Identities = 134/166 (80%), Positives = 146/166 (87%)
Frame = +1
Query: 1 LATLAVCYQHGRIQLMASIGDEAPYVMDSDIPIQFVSWNPHGTVLAVSAVMPTATVDASL 60
LATLA+CYQ G++QLM SIGDE P +MDSD P+ FVSWN GTVLA +A+ P DA
Sbjct: 646 LATLAICYQSGKMQLMTSIGDETPRLMDSDFPVHFVSWNSSGTVLAAAALTPATAEDAPT 825
Query: 61 VVTQFFSNEGIHLRTLRVAGKQCGGIAWEGGGLRVAIAVDASVYFANVRPEYKYCYFKKT 120
VVTQFFSNEG+HLRTLRVAGKQCGGI WEGGGLRVAIAVD+SVYFANVRP YKYCYFKKT
Sbjct: 826 VVTQFFSNEGVHLRTLRVAGKQCGGITWEGGGLRVAIAVDSSVYFANVRPSYKYCYFKKT 1005
Query: 121 VVFAFTVPDKIEESVMFWNVHTNERRMKSVRGLQYLSAWKDACVLV 166
VVFAFT+PDK+EESVMFWNV+TNERR KSVRGLQYLSA KDACVLV
Sbjct: 1006VVFAFTMPDKVEESVMFWNVNTNERRTKSVRGLQYLSACKDACVLV 1143
>emb|AM502226.1| Leishmania infantum chromosome 8
Length = 511966
Score = 277 bits (708), Expect = 9e-73, Method: Composition-based stats.
Identities = 134/166 (80%), Positives = 146/166 (87%)
Frame = +2
Query: 1 LATLAVCYQHGRIQLMASIGDEAPYVMDSDIPIQFVSWNPHGTVLAVSAVMPTATVDASL 60
LATLA+CYQ G++QLM SIGDE P +MDSD P+ FVSWN GTVLA +A+ P DA
Sbjct: 456968 LATLAICYQSGKMQLMTSIGDETPRLMDSDFPVHFVSWNSSGTVLAAAALTPATAEDAPT 457147
Query: 61 VVTQFFSNEGIHLRTLRVAGKQCGGIAWEGGGLRVAIAVDASVYFANVRPEYKYCYFKKT 120
VVTQFFSNEG+HLRTLRVAGKQCGGI WEGGGLRVAIAVD+SVYFANVRP YKYCYFKKT
Sbjct: 457148 VVTQFFSNEGVHLRTLRVAGKQCGGITWEGGGLRVAIAVDSSVYFANVRPSYKYCYFKKT 457327
Query: 121 VVFAFTVPDKIEESVMFWNVHTNERRMKSVRGLQYLSAWKDACVLV 166
VVFAFT+PDK+EESVMFWNV+TNERR KSVRGLQYLSA KDACVLV
Sbjct: 457328 VVFAFTMPDKVEESVMFWNVNTNERRTKSVRGLQYLSACKDACVLV 457465
>ref|XM_803142.1| Trypanosoma cruzi strain CL Brener hypothetical protein partial
mRNA
Length = 3768
Score = 211 bits (537), Expect = 7e-53, Method: Composition-based stats.
Identities = 97/177 (54%), Positives = 126/177 (71%), Gaps = 12/177 (6%)
Frame = +1
Query: 2 ATLAVCYQHGRIQLMASIGDEAPYVMDSDIPIQFVSWNPHGTVLAVSAVMPTATV----- 56
ATLAVCY +GR+QLM I D PY++DS IP+ ++WNP GT + V V+ TA +
Sbjct: 637 ATLAVCYANGRMQLMRDINDNRPYLIDSGIPVSCIAWNPQGTTIVVCGVISTAAMMGDRP 816
Query: 57 -------DASLVVTQFFSNEGIHLRTLRVAGKQCGGIAWEGGGLRVAIAVDASVYFANVR 109
+SLVV QFF+ EG+HLRTLRV+G+ CGG+ WEG GLRV IA+DA++YFANVR
Sbjct: 817 ASQPSSPSSSLVVAQFFNTEGVHLRTLRVSGQHCGGVTWEGDGLRVCIAIDAALYFANVR 996
Query: 110 PEYKYCYFKKTVVFAFTVPDKIEESVMFWNVHTNERRMKSVRGLQYLSAWKDACVLV 166
P YKY YF KTVVFAF D+ E+ VMFWN +NER ++ +RGL Y+ + KD C++V
Sbjct: 997 PAYKYTYFSKTVVFAFYRSDRAEQGVMFWNTRSNERFIRYIRGLFYIDSCKDVCMIV 1167
>ref|XM_806494.1| Trypanosoma cruzi strain CL Brener hypothetical protein partial
mRNA
Length = 3768
Score = 211 bits (537), Expect = 7e-53, Method: Composition-based stats.
Identities = 97/177 (54%), Positives = 126/177 (71%), Gaps = 12/177 (6%)
Frame = +1
Query: 2 ATLAVCYQHGRIQLMASIGDEAPYVMDSDIPIQFVSWNPHGTVLAVSAVMPTATV----- 56
ATLAVCY +GR+QLM I D PY++DS IP+ ++WNP GT + V V+ TA +
Sbjct: 637 ATLAVCYANGRMQLMRDINDNRPYLIDSGIPVSCIAWNPQGTTIVVCGVISTAAMMGDRP 816
Query: 57 -------DASLVVTQFFSNEGIHLRTLRVAGKQCGGIAWEGGGLRVAIAVDASVYFANVR 109
+SLVV QFF+ EG+HLRTLRV+G+ CGG+ WEG GLRV IA+DA++YFANVR
Sbjct: 817 ASQPSSPSSSLVVAQFFNTEGVHLRTLRVSGQHCGGVTWEGDGLRVCIAIDAALYFANVR 996
Query: 110 PEYKYCYFKKTVVFAFTVPDKIEESVMFWNVHTNERRMKSVRGLQYLSAWKDACVLV 166
P YKY YF KTVVFAF D+ E+ VMFWN +NER ++ +RGL Y+ + KD C++V
Sbjct: 997 PAYKYTYFSKTVVFAFYRSDRAEQGVMFWNTRSNERFIRYIRGLFYIDSCKDVCMIV 1167
>ref|XM_839882.1| Trypanosoma brucei TREU927 hypothetical protein partial mRNA
Length = 3783
Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats.
Identities = 87/187 (46%), Positives = 121/187 (64%), Gaps = 21/187 (11%)
Frame = +1
Query: 1 LATLAVCYQHGRIQLMASIGDEAPYVMDSDIPIQFVSWNPHGTVLAVSAVMPTA------ 54
L +LAVCY++GRI L+ I D V+++ I + ++WNP GT+LAV V T
Sbjct: 634 LPSLAVCYKNGRIHLLRGITDHEARVVEAGINVTGIAWNPQGTMLAVCGVPATGGASGDG 813
Query: 55 ---------------TVDASLVVTQFFSNEGIHLRTLRVAGKQCGGIAWEGGGLRVAIAV 99
AS V+T ++ +G+H+RTLR+ GK CGGI WEG GLRVA+AV
Sbjct: 814 GTSAQGGATGGDAGADGSASSVLTLIYNGDGVHMRTLRMNGKFCGGITWEGDGLRVAVAV 993
Query: 100 DASVYFANVRPEYKYCYFKKTVVFAFTVPDKIEESVMFWNVHTNERRMKSVRGLQYLSAW 159
DA++YFANVR +YKY YF KTVVFA+ PD+ + SVMFWN NER ++ +RGL ++ A
Sbjct: 994 DAAMYFANVRCDYKYAYFHKTVVFAYNRPDRTDSSVMFWNTRNNERVIRHIRGLLHIHAC 1173
Query: 160 KDACVLV 166
++AC++V
Sbjct: 1174RNACLIV 1194
>gb|AC104488.4| Trypanosoma brucei chromosome 5 clone RPCI93-26K5, complete sequence
Length = 136001
Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats.
Identities = 87/187 (46%), Positives = 121/187 (64%), Gaps = 21/187 (11%)
Frame = -3
Query: 1 LATLAVCYQHGRIQLMASIGDEAPYVMDSDIPIQFVSWNPHGTVLAVSAVMPTA------ 54
L +LAVCY++GRI L+ I D V+++ I + ++WNP GT+LAV V T
Sbjct: 10809 LPSLAVCYKNGRIHLLRGITDHEARVVEAGINVTGIAWNPQGTMLAVCGVPATGGASGDG 10630
Query: 55 ---------------TVDASLVVTQFFSNEGIHLRTLRVAGKQCGGIAWEGGGLRVAIAV 99
AS V+T ++ +G+H+RTLR+ GK CGGI WEG GLRVA+AV
Sbjct: 10629 GTSAQGGATGGDAGADGSASSVLTLIYNGDGVHMRTLRMNGKFCGGITWEGDGLRVAVAV 10450
Query: 100 DASVYFANVRPEYKYCYFKKTVVFAFTVPDKIEESVMFWNVHTNERRMKSVRGLQYLSAW 159
DA++YFANVR +YKY YF KTVVFA+ PD+ + SVMFWN NER ++ +RGL ++ A
Sbjct: 10449 DAAMYFANVRCDYKYAYFHKTVVFAYNRPDRTDSSVMFWNTRNNERVIRHIRGLLHIHAC 10270
Query: 160 KDACVLV 166
++AC++V
Sbjct: 10269 RNACLIV 10249
>ref|XM_419970.2| PREDICTED: Gallus gallus similar to KIAA1336 protein (LOC421958),
mRNA
Length = 4126
Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats.
Identities = 70/162 (43%), Positives = 110/162 (67%)
Frame = +1
Query: 4 LAVCYQHGRIQLMASIGDEAPYVMDSDIPIQFVSWNPHGTVLAVSAVMPTATVDASLVVT 63
LA+CY++GR Q+M D P ++D+ + + + WN G+VLA++ + + D + V
Sbjct: 736 LAICYENGRCQIMRDENDHNPVLIDTGMNVVCIQWNHCGSVLALAGSLKGTSPDKDVNVV 915
Query: 64 QFFSNEGIHLRTLRVAGKQCGGIAWEGGGLRVAIAVDASVYFANVRPEYKYCYFKKTVVF 123
QF++ G HLRTL+V GKQ ++WEGGGL++A+AVD+ +YFAN+RP+YK+ Y TVV+
Sbjct: 916 QFYTPFGEHLRTLKVPGKQISALSWEGGGLKIALAVDSYIYFANIRPDYKWGYCSNTVVY 1095
Query: 124 AFTVPDKIEESVMFWNVHTNERRMKSVRGLQYLSAWKDACVL 165
A+T PD+ E V+FW+ NE+ +K V+ L ++ + D CVL
Sbjct: 1096AYTRPDRPEYCVIFWDTKNNEKYVKYVKSLISITTYGDFCVL 1221
>ref|XM_001638388.1| Nematostella vectensis predicted protein (NEMVEDRAFT_v1g200609)
mRNA, complete cds
Length = 3522
Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats.
Identities = 71/162 (43%), Positives = 107/162 (66%)
Frame = +1
Query: 4 LAVCYQHGRIQLMASIGDEAPYVMDSDIPIQFVSWNPHGTVLAVSAVMPTATVDASLVVT 63
LA+C+ +GR+Q+M DE+P ++D+ + + + WN +G+VLAV+ D + V
Sbjct: 682 LAICFDNGRMQIMRHELDESPVLIDTSMMVVRIQWNSNGSVLAVAGTQRALAQDKDINVV 861
Query: 64 QFFSNEGIHLRTLRVAGKQCGGIAWEGGGLRVAIAVDASVYFANVRPEYKYCYFKKTVVF 123
QF++ G HLRTL+V GKQ WEGG LR+A+AVD+ +YFAN+RP YK+ YF TVV+
Sbjct: 862 QFYTPFGEHLRTLKVPGKQITAACWEGGSLRIALAVDSFIYFANIRPNYKWGYFSNTVVY 1041
Query: 124 AFTVPDKIEESVMFWNVHTNERRMKSVRGLQYLSAWKDACVL 165
AF PD++E V+FW+ E+ +K VR L ++A + C+L
Sbjct: 1042AFNKPDRVEHCVVFWDTKNGEKFVKYVRNLLSITACGEHCIL 1167
>ref|XM_001176904.1| PREDICTED: Strongylocentrotus purpuratus hypothetical LOC577925
(LOC577925), mRNA
Length = 3638
Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats.
Identities = 72/163 (44%), Positives = 111/163 (68%)
Frame = +1
Query: 3 TLAVCYQHGRIQLMASIGDEAPYVMDSDIPIQFVSWNPHGTVLAVSAVMPTATVDASLVV 62
TLA+CY +GR Q+M D+ P ++D+ + + V WN +G+ LAV+ +A D + V
Sbjct: 757 TLAICYDNGRAQIMRDETDDNPVLIDTGMTVVKVMWNYNGSALAVAGSQKSAQTDKDVNV 936
Query: 63 TQFFSNEGIHLRTLRVAGKQCGGIAWEGGGLRVAIAVDASVYFANVRPEYKYCYFKKTVV 122
QF++ G H+RTL+V G I+WEGGGLR+A+AVD+ +YFAN+RP+YK+ Y TVV
Sbjct: 937 VQFYNPFGEHMRTLKVPGSGLSAISWEGGGLRIALAVDSYIYFANIRPDYKWGYCASTVV 1116
Query: 123 FAFTVPDKIEESVMFWNVHTNERRMKSVRGLQYLSAWKDACVL 165
++FT P+++E V+FW+ +ER +K V+ L ++A+ D CVL
Sbjct: 1117YSFTKPERVENCVVFWDTLNSERYVKYVKNLLSVTAYGDHCVL 1245
>ref|XM_778124.2| PREDICTED: Strongylocentrotus purpuratus hypothetical LOC577925
(LOC577925), mRNA
Length = 3638
Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats.
Identities = 72/163 (44%), Positives = 111/163 (68%)
Frame = +1
Query: 3 TLAVCYQHGRIQLMASIGDEAPYVMDSDIPIQFVSWNPHGTVLAVSAVMPTATVDASLVV 62
TLA+CY +GR Q+M D+ P ++D+ + + V WN +G+ LAV+ +A D + V
Sbjct: 757 TLAICYDNGRAQIMRDETDDNPVLIDTGMTVVKVMWNYNGSALAVAGSQKSAQTDKDVNV 936
Query: 63 TQFFSNEGIHLRTLRVAGKQCGGIAWEGGGLRVAIAVDASVYFANVRPEYKYCYFKKTVV 122
QF++ G H+RTL+V G I+WEGGGLR+A+AVD+ +YFAN+RP+YK+ Y TVV
Sbjct: 937 VQFYNPFGEHMRTLKVPGSGLSAISWEGGGLRIALAVDSYIYFANIRPDYKWGYCASTVV 1116
Query: 123 FAFTVPDKIEESVMFWNVHTNERRMKSVRGLQYLSAWKDACVL 165
++FT P+++E V+FW+ +ER +K V+ L ++A+ D CVL
Sbjct: 1117YSFTKPERVENCVVFWDTLNSERYVKYVKNLLSVTAYGDHCVL 1245
>ref|XM_002231338.1| Branchiostoma floridae hypothetical protein (BRAFLDRAFT_266690)
mRNA, complete cds
Length = 4702
Score = 159 bits (401), Expect = 3e-37, Method: Composition-based stats.
Identities = 72/162 (44%), Positives = 107/162 (66%)
Frame = +1
Query: 4 LAVCYQHGRIQLMASIGDEAPYVMDSDIPIQFVSWNPHGTVLAVSAVMPTATVDASLVVT 63
LA+C+ +GR Q+M DEAP ++D+ + + ++WN G VLAV + D + V
Sbjct: 682 LAICFDNGRCQIMRHEYDEAPVLIDTGMQVIGIAWNHCGAVLAVGGSQKSQQQDRDINVV 861
Query: 64 QFFSNEGIHLRTLRVAGKQCGGIAWEGGGLRVAIAVDASVYFANVRPEYKYCYFKKTVVF 123
QF++ G HLRTL+V GK ++WEGG LR+A+AVD+ +YFAN+RP+YK+ Y TVV+
Sbjct: 862 QFYTPFGEHLRTLKVPGKSMQSVSWEGGSLRIALAVDSFIYFANIRPDYKWGYCSNTVVY 1041
Query: 124 AFTVPDKIEESVMFWNVHTNERRMKSVRGLQYLSAWKDACVL 165
+FT PD++E V+FW+ NER +K V+ L ++A D C L
Sbjct: 1042SFTKPDRMEHCVVFWDTKNNERFVKYVKNLMSITACGDFCCL 1167
>ref|XM_002200767.1| Branchiostoma floridae hypothetical protein (BRAFLDRAFT_117030)
mRNA, partial cds
Length = 3189
Score = 159 bits (401), Expect = 3e-37, Method: Composition-based stats.
Identities = 72/162 (44%), Positives = 107/162 (66%)
Frame = +1
Query: 4 LAVCYQHGRIQLMASIGDEAPYVMDSDIPIQFVSWNPHGTVLAVSAVMPTATVDASLVVT 63
LA+C+ +GR Q+M DEAP ++D+ + + ++WN G VLAV + D + V
Sbjct: 682 LAICFDNGRCQIMRHEYDEAPVLIDTGMQVIGIAWNHCGAVLAVGGSQKSQQQDRDINVV 861
Query: 64 QFFSNEGIHLRTLRVAGKQCGGIAWEGGGLRVAIAVDASVYFANVRPEYKYCYFKKTVVF 123
QF++ G HLRTL+V GK ++WEGG LR+A+AVD+ +YFAN+RP+YK+ Y TVV+
Sbjct: 862 QFYTPFGEHLRTLKVPGKSMQSVSWEGGSLRIALAVDSFIYFANIRPDYKWGYCSNTVVY 1041
Query: 124 AFTVPDKIEESVMFWNVHTNERRMKSVRGLQYLSAWKDACVL 165
+FT PD++E V+FW+ NER +K V+ L ++A D C L
Sbjct: 1042SFTKPDRMEHCVVFWDTKNNERFVKYVKNLMSITACGDFCCL 1167
>ref|XM_001107482.1| PREDICTED: Macaca mulatta WD repeat domain 35 (WDR35), mRNA
Length = 7191
Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats.
Identities = 69/162 (42%), Positives = 107/162 (66%)
Frame = +1
Query: 4 LAVCYQHGRIQLMASIGDEAPYVMDSDIPIQFVSWNPHGTVLAVSAVMPTATVDASLVVT 63
LAVC+ +GR Q+M D+ P ++D+ + + + WN G+VLAV+ A D + +
Sbjct: 1024 LAVCFDNGRCQIMRHENDQNPVLIDTGMYVVGIQWNHMGSVLAVAGFQKAAAQDKDVNIV 1203
Query: 64 QFFSNEGIHLRTLRVAGKQCGGIAWEGGGLRVAIAVDASVYFANVRPEYKYCYFKKTVVF 123
QF++ G HL TL+V GK+ ++WEGGGL++A+AVD+ +YFAN+RP YK+ Y TVV+
Sbjct: 1204 QFYTPFGEHLGTLKVPGKEISALSWEGGGLKIALAVDSFIYFANIRPNYKWGYCSNTVVY 1383
Query: 124 AFTVPDKIEESVMFWNVHTNERRMKSVRGLQYLSAWKDACVL 165
A+T PD+ E V+FW+ NE+ +K V+GL ++ D C+L
Sbjct: 1384 AYTRPDRPEHCVVFWDTKNNEKHVKYVKGLISITTCGDFCIL 1509
>ref|XR_054010.1| PREDICTED: Taeniopygia guttata misc_RNA (LOC100224634), miscRNA
Length = 4206
Score = 155 bits (393), Expect = 3e-36, Method: Composition-based stats.
Identities = 70/162 (43%), Positives = 108/162 (66%)
Frame = +1
Query: 4 LAVCYQHGRIQLMASIGDEAPYVMDSDIPIQFVSWNPHGTVLAVSAVMPTATVDASLVVT 63
LAVCY +GR Q+M D P ++D+ I + + WN +G++LA++ + A+ D + V
Sbjct: 769 LAVCYDNGRCQIMRDENDYNPVLIDAGINVVCIQWNSNGSILALAGSLKAASQDKDINVV 948
Query: 64 QFFSNEGIHLRTLRVAGKQCGGIAWEGGGLRVAIAVDASVYFANVRPEYKYCYFKKTVVF 123
QF++ G HLRTL+V GKQ ++WEGGGL++A+AVD +YFAN+RP YK+ Y TVV+
Sbjct: 949 QFYTPFGEHLRTLKVPGKQISSLSWEGGGLKIALAVDHYIYFANIRPHYKWGYCSNTVVY 1128
Query: 124 AFTVPDKIEESVMFWNVHTNERRMKSVRGLQYLSAWKDACVL 165
A+T ++ E V+FW+ NE+ +K V+ L ++ + D CVL
Sbjct: 1129AYTRAERPECCVVFWDTKNNEKYVKYVKSLISITTYGDFCVL 1254
>ref|XM_001511411.1| PREDICTED: Ornithorhynchus anatinus similar to WW domain binding
protein 2 (LOC100080585), mRNA
Length = 2040
Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats.
Identities = 69/162 (42%), Positives = 106/162 (65%)
Frame = +1
Query: 4 LAVCYQHGRIQLMASIGDEAPYVMDSDIPIQFVSWNPHGTVLAVSAVMPTATVDASLVVT 63
LA+C+ +GR Q+M D+ P ++D+ + + V WN G+VLAV+ A D +
Sbjct: 619 LAICFDNGRCQIMRQENDQNPILLDTGMYVVNVQWNHCGSVLAVAGSQKAAIQDKDVNTV 798
Query: 64 QFFSNEGIHLRTLRVAGKQCGGIAWEGGGLRVAIAVDASVYFANVRPEYKYCYFKKTVVF 123
QF++ G HLRTL+V GKQ ++WEGGGL++ +AVD+ +YFAN+RP+YK+ Y TVV+
Sbjct: 799 QFYTPFGEHLRTLKVPGKQMSALSWEGGGLKIGLAVDSFIYFANIRPDYKWGYCSNTVVY 978
Query: 124 AFTVPDKIEESVMFWNVHTNERRMKSVRGLQYLSAWKDACVL 165
A+T PD+ E V+FW+ NE+ +K V+ L ++ D C+L
Sbjct: 979 AYTRPDRAEYCVVFWDTKNNEKYVKYVKSLISITTCGDFCIL 1104
>gb|EF599100.1| Chlamydomonas reinhardtii intraflagellar transport protein 121 mRNA,
complete cds
Length = 4297
Score = 155 bits (391), Expect = 5e-36, Method: Composition-based stats.
Identities = 78/164 (47%), Positives = 107/164 (65%), Gaps = 2/164 (1%)
Frame = +2
Query: 4 LAVCYQHGRIQLMASIGDEAPYVMDSDIPIQFVSWNPHGTVLAVSAV-MPTATVDA-SLV 61
LA+C +GR+QLM D+ +D+ I V WN +GT+LAV+ M +A D L
Sbjct: 914 LAICLDNGRMQLMRYESDDNAVCIDTGIKPVKVKWNMNGTILAVAGFQMSSAVADGRELW 1093
Query: 62 VTQFFSNEGIHLRTLRVAGKQCGGIAWEGGGLRVAIAVDASVYFANVRPEYKYCYFKKTV 121
+ QF+++ G HLRTLRV G GI+WEG GLR+A++VD+ VYFANVRP+YK+ YF T+
Sbjct: 1094 MVQFYNHNGEHLRTLRVPGGGISGISWEGNGLRLALSVDSYVYFANVRPDYKWGYFCNTL 1273
Query: 122 VFAFTVPDKIEESVMFWNVHTNERRMKSVRGLQYLSAWKDACVL 165
V+AF PD+ E VMFW+ N++ K VR L + A+ D CVL
Sbjct: 1274 VYAFNRPDRSEHCVMFWDTKNNDKYPKYVRKLVAIQAFGDFCVL 1405
>ref|XM_001701969.1| Chlamydomonas reinhardtii flagellar associated protein (FAP118) mRNA,
complete cds
Length = 4291
Score = 155 bits (391), Expect = 5e-36, Method: Composition-based stats.
Identities = 78/164 (47%), Positives = 107/164 (65%), Gaps = 2/164 (1%)
Frame = +2
Query: 4 LAVCYQHGRIQLMASIGDEAPYVMDSDIPIQFVSWNPHGTVLAVSAV-MPTATVDA-SLV 61
LA+C +GR+QLM D+ +D+ I V WN +GT+LAV+ M +A D L
Sbjct: 914 LAICLDNGRMQLMRYESDDNAVCIDTGIKPVKVKWNMNGTILAVAGFQMSSAVADGRELW 1093
Query: 62 VTQFFSNEGIHLRTLRVAGKQCGGIAWEGGGLRVAIAVDASVYFANVRPEYKYCYFKKTV 121
+ QF+++ G HLRTLRV G GI+WEG GLR+A++VD+ VYFANVRP+YK+ YF T+
Sbjct: 1094 MVQFYNHNGEHLRTLRVPGGGISGISWEGNGLRLALSVDSYVYFANVRPDYKWGYFCNTL 1273
Query: 122 VFAFTVPDKIEESVMFWNVHTNERRMKSVRGLQYLSAWKDACVL 165
V+AF PD+ E VMFW+ N++ K VR L + A+ D CVL
Sbjct: 1274 VYAFNRPDRSEHCVMFWDTKNNDKYPKYVRKLVAIQAFGDFCVL 1405
>ref|XM_515315.2| PREDICTED: Pan troglodytes WD repeat domain 35 (WDR35), mRNA
Length = 7122
Score = 154 bits (390), Expect = 7e-36, Method: Composition-based stats.
Identities = 69/162 (42%), Positives = 107/162 (66%)
Frame = +1
Query: 4 LAVCYQHGRIQLMASIGDEAPYVMDSDIPIQFVSWNPHGTVLAVSAVMPTATVDASLVVT 63
LAVC+ +GR Q+M D+ P ++D+ + + + WN G+VLAV+ A D + +
Sbjct: 955 LAVCFDNGRCQIMRHENDQNPVLIDTGMYVVGIQWNHMGSVLAVAGFQKAAMQDKDVNIV 1134
Query: 64 QFFSNEGIHLRTLRVAGKQCGGIAWEGGGLRVAIAVDASVYFANVRPEYKYCYFKKTVVF 123
QF++ G HL TL+V GK+ ++WEGGGL++A+AVD+ +YFAN+RP YK+ Y TVV+
Sbjct: 1135 QFYTPFGEHLGTLKVPGKEISALSWEGGGLKIALAVDSFIYFANIRPNYKWGYCSNTVVY 1314
Query: 124 AFTVPDKIEESVMFWNVHTNERRMKSVRGLQYLSAWKDACVL 165
A+T PD+ E V+FW+ NE+ +K V+GL ++ D C+L
Sbjct: 1315 AYTRPDRPEYCVVFWDTKNNEKYVKYVKGLISITTCGDFCIL 1440
>dbj|AB385451.1| Synthetic construct DNA, clone: pF1KA1336, Homo sapiens WDR35 gene
for WD repeat protein 35, complete cds, without stop
codon, in Flexi system
Length = 3560
Score = 154 bits (390), Expect = 7e-36, Method: Composition-based stats.
Identities = 69/162 (42%), Positives = 107/162 (66%)
Frame = +1
Query: 4 LAVCYQHGRIQLMASIGDEAPYVMDSDIPIQFVSWNPHGTVLAVSAVMPTATVDASLVVT 63
LAVC+ +GR Q+M D+ P ++D+ + + + WN G+VLAV+ A D + +
Sbjct: 688 LAVCFDNGRCQIMRHENDQNPVLIDTGMYVVGIQWNHMGSVLAVAGFQKAAMQDKDVNIV 867
Query: 64 QFFSNEGIHLRTLRVAGKQCGGIAWEGGGLRVAIAVDASVYFANVRPEYKYCYFKKTVVF 123
QF++ G HL TL+V GK+ ++WEGGGL++A+AVD+ +YFAN+RP YK+ Y TVV+
Sbjct: 868 QFYTPFGEHLGTLKVPGKEISALSWEGGGLKIALAVDSFIYFANIRPNYKWGYCSNTVVY 1047
Query: 124 AFTVPDKIEESVMFWNVHTNERRMKSVRGLQYLSAWKDACVL 165
A+T PD+ E V+FW+ NE+ +K V+GL ++ D C+L
Sbjct: 1048AYTRPDRPEYCVVFWDTKNNEKYVKYVKGLISITTCGDFCIL 1173
>ref|NM_001006657.1| Homo sapiens WD repeat domain 35 (WDR35), transcript variant 1,
mRNA
Length = 6957
Score = 154 bits (390), Expect = 7e-36, Method: Composition-based stats.
Identities = 69/162 (42%), Positives = 107/162 (66%)
Frame = +1
Query: 4 LAVCYQHGRIQLMASIGDEAPYVMDSDIPIQFVSWNPHGTVLAVSAVMPTATVDASLVVT 63
LAVC+ +GR Q+M D+ P ++D+ + + + WN G+VLAV+ A D + +
Sbjct: 787 LAVCFDNGRCQIMRHENDQNPVLIDTGMYVVGIQWNHMGSVLAVAGFQKAAMQDKDVNIV 966
Query: 64 QFFSNEGIHLRTLRVAGKQCGGIAWEGGGLRVAIAVDASVYFANVRPEYKYCYFKKTVVF 123
QF++ G HL TL+V GK+ ++WEGGGL++A+AVD+ +YFAN+RP YK+ Y TVV+
Sbjct: 967 QFYTPFGEHLGTLKVPGKEISALSWEGGGLKIALAVDSFIYFANIRPNYKWGYCSNTVVY 1146
Query: 124 AFTVPDKIEESVMFWNVHTNERRMKSVRGLQYLSAWKDACVL 165
A+T PD+ E V+FW+ NE+ +K V+GL ++ D C+L
Sbjct: 1147AYTRPDRPEYCVVFWDTKNNEKYVKYVKGLISITTCGDFCIL 1272
>dbj|AB037757.2| Homo sapiens mRNA for KIAA1336 protein, partial cds
Length = 6950
Score = 154 bits (390), Expect = 7e-36, Method: Composition-based stats.
Identities = 69/162 (42%), Positives = 107/162 (66%)
Frame = +3
Query: 4 LAVCYQHGRIQLMASIGDEAPYVMDSDIPIQFVSWNPHGTVLAVSAVMPTATVDASLVVT 63
LAVC+ +GR Q+M D+ P ++D+ + + + WN G+VLAV+ A D + +
Sbjct: 795 LAVCFDNGRCQIMRHENDQNPVLIDTGMYVVGIQWNHMGSVLAVAGFQKAAMQDKDVNIV 974
Query: 64 QFFSNEGIHLRTLRVAGKQCGGIAWEGGGLRVAIAVDASVYFANVRPEYKYCYFKKTVVF 123
QF++ G HL TL+V GK+ ++WEGGGL++A+AVD+ +YFAN+RP YK+ Y TVV+
Sbjct: 975 QFYTPFGEHLGTLKVPGKEISALSWEGGGLKIALAVDSFIYFANIRPNYKWGYCSNTVVY 1154
Query: 124 AFTVPDKIEESVMFWNVHTNERRMKSVRGLQYLSAWKDACVL 165
A+T PD+ E V+FW+ NE+ +K V+GL ++ D C+L
Sbjct: 1155AYTRPDRPEYCVVFWDTKNNEKYVKYVKGLISITTCGDFCIL 1280
>dbj|AK315094.1| Homo sapiens cDNA, FLJ96052
Length = 3450
Score = 154 bits (390), Expect = 8e-36, Method: Composition-based stats.
Identities = 69/162 (42%), Positives = 107/162 (66%)
Frame = +1
Query: 4 LAVCYQHGRIQLMASIGDEAPYVMDSDIPIQFVSWNPHGTVLAVSAVMPTATVDASLVVT 63
LAVC+ +GR Q+M D+ P ++D+ + + + WN G+VLAV+ A D + +
Sbjct: 712 LAVCFDNGRCQIMRHENDQNPVLIDTGMYVVGIQWNHMGSVLAVAGFQKAAMQDKDVNIV 891
Query: 64 QFFSNEGIHLRTLRVAGKQCGGIAWEGGGLRVAIAVDASVYFANVRPEYKYCYFKKTVVF 123
QF++ G HL TL+V GK+ ++WEGGGL++A+AVD+ +YFAN+RP YK+ Y TVV+
Sbjct: 892 QFYTPFGEHLGTLKVPGKEISALSWEGGGLKIALAVDSFIYFANIRPNYKWGYCSNTVVY 1071
Query: 124 AFTVPDKIEESVMFWNVHTNERRMKSVRGLQYLSAWKDACVL 165
A+T PD+ E V+FW+ NE+ +K V+GL ++ D C+L
Sbjct: 1072AYTRPDRPEYCVVFWDTKNNEKYVKYVKGLISITTCGDFCIL 1197
>ref|NM_020779.3| Homo sapiens WD repeat domain 35 (WDR35), transcript variant 2,
mRNA
Length = 6924
Score = 154 bits (390), Expect = 8e-36, Method: Composition-based stats.
Identities = 69/162 (42%), Positives = 107/162 (66%)
Frame = +1
Query: 4 LAVCYQHGRIQLMASIGDEAPYVMDSDIPIQFVSWNPHGTVLAVSAVMPTATVDASLVVT 63
LAVC+ +GR Q+M D+ P ++D+ + + + WN G+VLAV+ A D + +
Sbjct: 787 LAVCFDNGRCQIMRHENDQNPVLIDTGMYVVGIQWNHMGSVLAVAGFQKAAMQDKDVNIV 966
Query: 64 QFFSNEGIHLRTLRVAGKQCGGIAWEGGGLRVAIAVDASVYFANVRPEYKYCYFKKTVVF 123
QF++ G HL TL+V GK+ ++WEGGGL++A+AVD+ +YFAN+RP YK+ Y TVV+
Sbjct: 967 QFYTPFGEHLGTLKVPGKEISALSWEGGGLKIALAVDSFIYFANIRPNYKWGYCSNTVVY 1146
Query: 124 AFTVPDKIEESVMFWNVHTNERRMKSVRGLQYLSAWKDACVL 165
A+T PD+ E V+FW+ NE+ +K V+GL ++ D C+L
Sbjct: 1147AYTRPDRPEYCVVFWDTKNNEKYVKYVKGLISITTCGDFCIL 1272
>dbj|AK122917.1| Homo sapiens cDNA FLJ16596 fis, clone TESTI4005635, highly similar
to WD repeat protein 35
Length = 3860
Score = 154 bits (390), Expect = 8e-36, Method: Composition-based stats.
Identities = 69/162 (42%), Positives = 107/162 (66%)
Frame = +1
Query: 4 LAVCYQHGRIQLMASIGDEAPYVMDSDIPIQFVSWNPHGTVLAVSAVMPTATVDASLVVT 63
LAVC+ +GR Q+M D+ P ++D+ + + + WN G+VLAV+ A D + +
Sbjct: 712 LAVCFDNGRCQIMRHENDQNPVLIDTGMYVVGIQWNHMGSVLAVAGFQKAAMQDKDVNIV 891
Query: 64 QFFSNEGIHLRTLRVAGKQCGGIAWEGGGLRVAIAVDASVYFANVRPEYKYCYFKKTVVF 123
QF++ G HL TL+V GK+ ++WEGGGL++A+AVD+ +YFAN+RP YK+ Y TVV+
Sbjct: 892 QFYTPFGEHLGTLKVPGKEISALSWEGGGLKIALAVDSFIYFANIRPNYKWGYCSNTVVY 1071
Query: 124 AFTVPDKIEESVMFWNVHTNERRMKSVRGLQYLSAWKDACVL 165
A+T PD+ E V+FW+ NE+ +K V+GL ++ D C+L
Sbjct: 1072AYTRPDRPEYCVVFWDTKNNEKYVKYVKGLISITTCGDFCIL 1197
>gb|BC036659.2| Homo sapiens WD repeat domain 35, mRNA (cDNA clone MGC:33196
IMAGE:5266940), complete cds
Length = 3952
Score = 154 bits (390), Expect = 8e-36, Method: Composition-based stats.
Identities = 69/162 (42%), Positives = 107/162 (66%)
Frame = +3
Query: 4 LAVCYQHGRIQLMASIGDEAPYVMDSDIPIQFVSWNPHGTVLAVSAVMPTATVDASLVVT 63
LAVC+ +GR Q+M D+ P ++D+ + + + WN G+VLAV+ A D + +
Sbjct: 786 LAVCFDNGRCQIMRHENDQNPVLIDTGMYVVGIQWNHMGSVLAVAGFQKAAMQDKDVNIV 965
Query: 64 QFFSNEGIHLRTLRVAGKQCGGIAWEGGGLRVAIAVDASVYFANVRPEYKYCYFKKTVVF 123
QF++ G HL TL+V GK+ ++WEGGGL++A+AVD+ +YFAN+RP YK+ Y TVV+
Sbjct: 966 QFYTPFGEHLGTLKVPGKEISALSWEGGGLKIALAVDSFIYFANIRPNYKWGYCSNTVVY 1145
Query: 124 AFTVPDKIEESVMFWNVHTNERRMKSVRGLQYLSAWKDACVL 165
A+T PD+ E V+FW+ NE+ +K V+GL ++ D C+L
Sbjct: 1146AYTRPDRPEYCVVFWDTKNNEKYVKYVKGLISITTCGDFCIL 1271
>ref|XM_532884.2| PREDICTED: Canis familiaris similar to WD repeat domain 35
(LOC475677), mRNA
Length = 4083
Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats.
Identities = 68/162 (41%), Positives = 106/162 (65%)
Frame = +1
Query: 4 LAVCYQHGRIQLMASIGDEAPYVMDSDIPIQFVSWNPHGTVLAVSAVMPTATVDASLVVT 63
LA+C+ +GR Q+M D+ P ++D+ + + + WN G+VLAV+ T D +
Sbjct: 691 LAICFDNGRCQIMRHENDQNPVLIDTGMYVVSIQWNHIGSVLAVAGSQKVVTQDKDVNTV 870
Query: 64 QFFSNEGIHLRTLRVAGKQCGGIAWEGGGLRVAIAVDASVYFANVRPEYKYCYFKKTVVF 123
QF++ G HL TL+V GKQ ++WEGGGL++A+AVD+ +YFAN+RP+YK+ Y TVV+
Sbjct: 871 QFYTPFGEHLGTLKVPGKQMSALSWEGGGLKIALAVDSFIYFANIRPDYKWGYCSNTVVY 1050
Query: 124 AFTVPDKIEESVMFWNVHTNERRMKSVRGLQYLSAWKDACVL 165
A+T PD+ E V+FW+ NE+ +K V+ L ++ D C+L
Sbjct: 1051AYTRPDRPEYCVIFWDTKNNEKYVKYVKSLLSITTCGDFCIL 1176
>dbj|AK091205.1| Homo sapiens cDNA FLJ33886 fis, clone CTONG2007399, highly similar
to WD repeat protein 35
Length = 2788
Score = 152 bits (385), Expect = 3e-35, Method: Composition-based stats.
Identities = 69/162 (42%), Positives = 107/162 (66%)
Frame = +3
Query: 4 LAVCYQHGRIQLMASIGDEAPYVMDSDIPIQFVSWNPHGTVLAVSAVMPTATVDASLVVT 63
LAVC+ +GR Q+M D+ P ++D+ + + + WN G+VLAV+ A D + +
Sbjct: 216 LAVCFDNGRCQIMRHENDQNPVLIDTGMYVVGIQWNHMGSVLAVAGFQKAAMQDKDVNIV 395
Query: 64 QFFSNEGIHLRTLRVAGKQCGGIAWEGGGLRVAIAVDASVYFANVRPEYKYCYFKKTVVF 123
QF++ G HL TL+V GK+ ++WEGGGL++A+AVD+ +YFAN+RP YK+ Y TVV+
Sbjct: 396 QFYTPFGEHLGTLKVPGKEISALSWEGGGLKIALAVDSFIYFANIRPNYKWGYCSNTVVY 575
Query: 124 AFTVPDKIEESVMFWNVHTNERRMKSVRGLQYLSAWKDACVL 165
A+T PD+ E V+FW+ NE+ +K V+GL ++ D C+L
Sbjct: 576 AYTRPDRPEYCVVFWDTKNNEKYVKYVKGLISITTCGDFCIL 701
>ref|NM_001145589.1| Danio rerio im:7159945 (im:7159945), mRNA
Length = 4088
Score = 152 bits (385), Expect = 3e-35, Method: Composition-based stats.
Identities = 67/163 (41%), Positives = 109/163 (66%), Gaps = 1/163 (0%)
Frame = +1
Query: 4 LAVCYQHGRIQLMASIGDEAPYVMDSDI-PIQFVSWNPHGTVLAVSAVMPTATVDASLVV 62
LAVC+ +G Q+M D++P ++++ + + + WN G+VLA++ + + + + V
Sbjct: 907 LAVCFTNGHCQVMRHESDDSPVIIETGMWNVASIQWNHCGSVLAIAGSLRNSGAEKEMNV 1086
Query: 63 TQFFSNEGIHLRTLRVAGKQCGGIAWEGGGLRVAIAVDASVYFANVRPEYKYCYFKKTVV 122
F++ G HLRTL+V GKQ ++WEGGGLR+ +AVD+ +YFAN+RP+YK+ Y TVV
Sbjct: 1087 VHFYTPFGEHLRTLKVPGKQMTAVSWEGGGLRIGLAVDSYIYFANIRPDYKWGYCSNTVV 1266
Query: 123 FAFTVPDKIEESVMFWNVHTNERRMKSVRGLQYLSAWKDACVL 165
+A+T PD++E SV+FW+ NER +K V+ L ++ D C+L
Sbjct: 1267 YAYTRPDRLEYSVVFWDTKNNERFVKYVKSLMSITTCGDFCIL 1395
>ref|XM_001072062.1| PREDICTED: Rattus norvegicus WD repeat domain 35 (predicted)
(Wdr35_predicted), mRNA
Length = 4762
Score = 152 bits (383), Expect = 5e-35, Method: Composition-based stats.
Identities = 68/162 (41%), Positives = 107/162 (66%)
Frame = +2
Query: 4 LAVCYQHGRIQLMASIGDEAPYVMDSDIPIQFVSWNPHGTVLAVSAVMPTATVDASLVVT 63
LA+C+ +GR Q+M D+ P ++D+ + + + WN G+VLAV+ T D + +
Sbjct: 929 LAICFDNGRCQIMRHENDQNPVLIDTGMYVVGIQWNHIGSVLAVAGSQKVVTQDKDVNIV 1108
Query: 64 QFFSNEGIHLRTLRVAGKQCGGIAWEGGGLRVAIAVDASVYFANVRPEYKYCYFKKTVVF 123
QF++ G HL TL+V GKQ ++WEGGGL++A+AVD+ +YFAN+RP+YK+ Y TVV+
Sbjct: 1109 QFYTPFGEHLGTLKVPGKQMCSLSWEGGGLKIALAVDSFIYFANIRPDYKWGYCSNTVVY 1288
Query: 124 AFTVPDKIEESVMFWNVHTNERRMKSVRGLQYLSAWKDACVL 165
A+T PD+ E V+FW+ NE+ +K V+ L ++ D C+L
Sbjct: 1289 AYTRPDRPEYCVVFWDTKNNEKYVKYVKSLISITTCGDFCIL 1414
>gb|EF613262.1| Rattus norvegicus naofen mRNA, complete cds
Length = 4194
Score = 152 bits (383), Expect = 5e-35, Method: Composition-based stats.
Identities = 68/162 (41%), Positives = 107/162 (66%)
Frame = +3
Query: 4 LAVCYQHGRIQLMASIGDEAPYVMDSDIPIQFVSWNPHGTVLAVSAVMPTATVDASLVVT 63
LA+C+ +GR Q+M D+ P ++D+ + + + WN G+VLAV+ T D + +
Sbjct: 783 LAICFDNGRCQIMRHENDQNPVLIDTGMYVVGIQWNHIGSVLAVAGSQKVVTQDKDVNIV 962
Query: 64 QFFSNEGIHLRTLRVAGKQCGGIAWEGGGLRVAIAVDASVYFANVRPEYKYCYFKKTVVF 123
QF++ G HL TL+V GKQ ++WEGGGL++A+AVD+ +YFAN+RP+YK+ Y TVV+
Sbjct: 963 QFYTPFGEHLGTLKVPGKQMCSLSWEGGGLKIALAVDSFIYFANIRPDYKWGYCSNTVVY 1142
Query: 124 AFTVPDKIEESVMFWNVHTNERRMKSVRGLQYLSAWKDACVL 165
A+T PD+ E V+FW+ NE+ +K V+ L ++ D C+L
Sbjct: 1143AYTRPDRPEYCVVFWDTKNNEKYVKYVKSLISITTCGDFCIL 1268
>ref|XM_001503372.2| PREDICTED: Equus caballus similar to WD repeat domain 35,
transcript variant 1 (LOC100056455), mRNA
Length = 3612
Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats.
Identities = 67/162 (41%), Positives = 105/162 (64%)
Frame = +2
Query: 4 LAVCYQHGRIQLMASIGDEAPYVMDSDIPIQFVSWNPHGTVLAVSAVMPTATVDASLVVT 63
LA+C+ +GR Q+M D+ P ++D+ + + + WN G+VLAV+ T D +
Sbjct: 704 LAICFDNGRCQIMRHENDQNPVLIDTGMYVVSIQWNHTGSVLAVAGSQKAITQDKDVNTV 883
Query: 64 QFFSNEGIHLRTLRVAGKQCGGIAWEGGGLRVAIAVDASVYFANVRPEYKYCYFKKTVVF 123
QF++ G HL TL+V GK ++WEGGGL++A+AVD+ +YFAN+RP+YK+ Y TVV+
Sbjct: 884 QFYTPFGEHLGTLKVPGKHMSALSWEGGGLKIALAVDSFIYFANIRPDYKWGYCSNTVVY 1063
Query: 124 AFTVPDKIEESVMFWNVHTNERRMKSVRGLQYLSAWKDACVL 165
A+T PD+ E V+FW+ NE+ +K V+ L ++ D C+L
Sbjct: 1064AYTRPDRPEYCVVFWDTKNNEKYVKYVKSLISITTCGDFCIL 1189
>dbj|AK083971.1| Mus musculus 12 days embryo spinal ganglion cDNA, RIKEN full-length
enriched library, clone:D130070O22 product:hypothetical
Trp-Asp (WD) repeats profile/Trp-Asp (WD) repeats
circular profile/G-protein beta WD-40 repeats containing
protein, full insert sequence
Length = 3787
Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats.
Identities = 67/162 (41%), Positives = 107/162 (66%)
Frame = +2
Query: 4 LAVCYQHGRIQLMASIGDEAPYVMDSDIPIQFVSWNPHGTVLAVSAVMPTATVDASLVVT 63
LA+C+ +GR Q+M D+ P ++D+ + + + WN G+VLAV+ T D + +
Sbjct: 779 LAICFDNGRCQIMRHENDQNPVLIDTGMYVVGIQWNHIGSVLAVAGSQKVVTQDKDINIV 958
Query: 64 QFFSNEGIHLRTLRVAGKQCGGIAWEGGGLRVAIAVDASVYFANVRPEYKYCYFKKTVVF 123
QF++ G HL TL+V GKQ ++WEGGGL++A+AVD+ +YFAN+RP+YK+ Y TVV+
Sbjct: 959 QFYTPFGEHLGTLKVPGKQMCSLSWEGGGLKIALAVDSFIYFANIRPDYKWGYCSNTVVY 1138
Query: 124 AFTVPDKIEESVMFWNVHTNERRMKSVRGLQYLSAWKDACVL 165
A+T PD+ E V+FW+ +E+ +K V+ L ++ D C+L
Sbjct: 1139AYTRPDRPEYCVVFWDTKNSEKYVKYVKSLISITTCGDFCIL 1264
>dbj|AK029896.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
library, clone:4931430C06 product:hypothetical Trp-Asp
(WD) repeats profile/Trp-Asp (WD) repeats circular
profile/G-protein beta WD-40 repeats containing protein,
full insert sequence
Length = 4314
Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats.
Identities = 67/162 (41%), Positives = 107/162 (66%)
Frame = +3
Query: 4 LAVCYQHGRIQLMASIGDEAPYVMDSDIPIQFVSWNPHGTVLAVSAVMPTATVDASLVVT 63
LA+C+ +GR Q+M D+ P ++D+ + + + WN G+VLAV+ T D + +
Sbjct: 789 LAICFDNGRCQIMRHENDQNPVLIDTGMYVVGIQWNHIGSVLAVAGSQKVVTQDKDINIV 968
Query: 64 QFFSNEGIHLRTLRVAGKQCGGIAWEGGGLRVAIAVDASVYFANVRPEYKYCYFKKTVVF 123
QF++ G HL TL+V GKQ ++WEGGGL++A+AVD+ +YFAN+RP+YK+ Y TVV+
Sbjct: 969 QFYTPFGEHLGTLKVPGKQMCSLSWEGGGLKIALAVDSFIYFANIRPDYKWGYCSNTVVY 1148
Query: 124 AFTVPDKIEESVMFWNVHTNERRMKSVRGLQYLSAWKDACVL 165
A+T PD+ E V+FW+ +E+ +K V+ L ++ D C+L
Sbjct: 1149AYTRPDRPEYCVVFWDTKNSEKYVKYVKSLISITTCGDFCIL 1274
>gb|BC056925.1| Mus musculus WD repeat domain 35, mRNA (cDNA clone MGC:66519
IMAGE:5704780), complete cds
Length = 4518
Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats.
Identities = 67/162 (41%), Positives = 107/162 (66%)
Frame = +1
Query: 4 LAVCYQHGRIQLMASIGDEAPYVMDSDIPIQFVSWNPHGTVLAVSAVMPTATVDASLVVT 63
LA+C+ +GR Q+M D+ P ++D+ + + + WN G+VLAV+ T D + +
Sbjct: 943 LAICFDNGRCQIMRHENDQNPVLIDTGMYVVGIQWNHIGSVLAVAGSQKVVTQDKDINIV 1122
Query: 64 QFFSNEGIHLRTLRVAGKQCGGIAWEGGGLRVAIAVDASVYFANVRPEYKYCYFKKTVVF 123
QF++ G HL TL+V GKQ ++WEGGGL++A+AVD+ +YFAN+RP+YK+ Y TVV+
Sbjct: 1123 QFYTPFGEHLGTLKVPGKQMCSLSWEGGGLKIALAVDSFIYFANIRPDYKWGYCSNTVVY 1302
Query: 124 AFTVPDKIEESVMFWNVHTNERRMKSVRGLQYLSAWKDACVL 165
A+T PD+ E V+FW+ +E+ +K V+ L ++ D C+L
Sbjct: 1303 AYTRPDRPEYCVVFWDTKNSEKYVKYVKSLISITTCGDFCIL 1428
>dbj|AK173151.1| Mus musculus mRNA for mKIAA1336 protein
Length = 3941
Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats.
Identities = 67/162 (41%), Positives = 107/162 (66%)
Frame = +2
Query: 4 LAVCYQHGRIQLMASIGDEAPYVMDSDIPIQFVSWNPHGTVLAVSAVMPTATVDASLVVT 63
LA+C+ +GR Q+M D+ P ++D+ + + + WN G+VLAV+ T D + +
Sbjct: 776 LAICFDNGRCQIMRHENDQNPVLIDTGMYVVGIQWNHIGSVLAVAGSQKVVTQDKDINIV 955
Query: 64 QFFSNEGIHLRTLRVAGKQCGGIAWEGGGLRVAIAVDASVYFANVRPEYKYCYFKKTVVF 123
QF++ G HL TL+V GKQ ++WEGGGL++A+AVD+ +YFAN+RP+YK+ Y TVV+
Sbjct: 956 QFYTPFGEHLGTLKVPGKQMCSLSWEGGGLKIALAVDSFIYFANIRPDYKWGYCSNTVVY 1135
Query: 124 AFTVPDKIEESVMFWNVHTNERRMKSVRGLQYLSAWKDACVL 165
A+T PD+ E V+FW+ +E+ +K V+ L ++ D C+L
Sbjct: 1136AYTRPDRPEYCVVFWDTKNSEKYVKYVKSLISITTCGDFCIL 1261
>dbj|AK031061.1| Mus musculus 13 days embryo forelimb cDNA, RIKEN full-length
enriched library, clone:5930400G23 product:hypothetical
Trp-Asp (WD) repeats profile/Trp-Asp (WD) repeats
circular profile/G-protein beta WD-40 repeats containing
protein, full insert sequence
Length = 2922
Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats.
Identities = 67/162 (41%), Positives = 107/162 (66%)
Frame = +3
Query: 4 LAVCYQHGRIQLMASIGDEAPYVMDSDIPIQFVSWNPHGTVLAVSAVMPTATVDASLVVT 63
LA+C+ +GR Q+M D+ P ++D+ + + + WN G+VLAV+ T D + +
Sbjct: 825 LAICFDNGRCQIMRHENDQNPVLIDTGMYVVGIQWNHIGSVLAVAGSQKVVTQDKDINIV 1004
Query: 64 QFFSNEGIHLRTLRVAGKQCGGIAWEGGGLRVAIAVDASVYFANVRPEYKYCYFKKTVVF 123
QF++ G HL TL+V GKQ ++WEGGGL++A+AVD+ +YFAN+RP+YK+ Y TVV+
Sbjct: 1005QFYTPFGEHLGTLKVPGKQMCSLSWEGGGLKIALAVDSFIYFANIRPDYKWGYCSNTVVY 1184
Query: 124 AFTVPDKIEESVMFWNVHTNERRMKSVRGLQYLSAWKDACVL 165
A+T PD+ E V+FW+ +E+ +K V+ L ++ D C+L
Sbjct: 1185AYTRPDRPEYCVVFWDTKNSEKYVKYVKSLISITTCGDFCIL 1310
>dbj|AK015490.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
library, clone:4930459M12 product:hypothetical G-protein
beta WD-40 repeats containing protein, full insert
sequence
Length = 1476
Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats.
Identities = 67/162 (41%), Positives = 107/162 (66%)
Frame = +1
Query: 4 LAVCYQHGRIQLMASIGDEAPYVMDSDIPIQFVSWNPHGTVLAVSAVMPTATVDASLVVT 63
LA+C+ +GR Q+M D+ P ++D+ + + + WN G+VLAV+ T D + +
Sbjct: 799 LAICFDNGRCQIMRHENDQNPVLIDTGMYVVGIQWNHIGSVLAVAGSQKVVTQDKDINIV 978
Query: 64 QFFSNEGIHLRTLRVAGKQCGGIAWEGGGLRVAIAVDASVYFANVRPEYKYCYFKKTVVF 123
QF++ G HL TL+V GKQ ++WEGGGL++A+AVD+ +YFAN+RP+YK+ Y TVV+
Sbjct: 979 QFYTPFGEHLGTLKVPGKQMCSLSWEGGGLKIALAVDSFIYFANIRPDYKWGYCSNTVVY 1158
Query: 124 AFTVPDKIEESVMFWNVHTNERRMKSVRGLQYLSAWKDACVL 165
A+T PD+ E V+FW+ +E+ +K V+ L ++ D C+L
Sbjct: 1159AYTRPDRPEYCVVFWDTKNSEKYVKYVKSLISITTCGDFCIL 1284
>dbj|AK053724.1| Mus musculus 0 day neonate eyeball cDNA, RIKEN full-length enriched
library, clone:E130302K06 product:RIKEN cDNA 4930459M12
gene, full insert sequence
Length = 2757
Score = 148 bits (373), Expect = 7e-34, Method: Composition-based stats.
Identities = 67/162 (41%), Positives = 107/162 (66%)
Frame = +1
Query: 4 LAVCYQHGRIQLMASIGDEAPYVMDSDIPIQFVSWNPHGTVLAVSAVMPTATVDASLVVT 63
LA+C+ +GR Q+M D+ P ++D+ + + + WN G+VLAV+ T D + +
Sbjct: 655 LAICFDNGRCQIMRHENDQNPVLIDTGMYVVGIQWNHIGSVLAVAGSQKVVTQDKDINIV 834
Query: 64 QFFSNEGIHLRTLRVAGKQCGGIAWEGGGLRVAIAVDASVYFANVRPEYKYCYFKKTVVF 123
QF++ G HL TL+V GKQ ++WEGGGL++A+AVD+ +YFAN+RP+YK+ Y TVV+
Sbjct: 835 QFYTPFGEHLGTLKVPGKQMCSLSWEGGGLKIALAVDSFIYFANIRPDYKWGYCSNTVVY 1014
Query: 124 AFTVPDKIEESVMFWNVHTNERRMKSVRGLQYLSAWKDACVL 165
A+T PD+ E V+FW+ +E+ +K V+ L ++ D C+L
Sbjct: 1015AYTRPDRPEYCVVFWDTKNSEKYVKYVKSLISITTCGDFCIL 1140
>ref|XM_002114477.1| Trichoplax adhaerens hypothetical protein, mRNA
Length = 3516
Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats.
Identities = 65/163 (39%), Positives = 107/163 (65%)
Frame = +1
Query: 3 TLAVCYQHGRIQLMASIGDEAPYVMDSDIPIQFVSWNPHGTVLAVSAVMPTATVDASLVV 62
+L CY +G++QLM S DE P ++D+ + I V WN G+VLAV + + ++V+
Sbjct: 667 SLVACYDNGKMQLMKSETDENPIIIDTGLSISTVQWNHTGSVLAVGGLQQNQEKETNVVL 846
Query: 63 TQFFSNEGIHLRTLRVAGKQCGGIAWEGGGLRVAIAVDASVYFANVRPEYKYCYFKKTVV 122
F++ G HLRTLR+ GK+ ++W+G GLR+++A+D+ +YFAN+RP+YK+ Y TVV
Sbjct: 847 --FYTPFGDHLRTLRIPGKKLADLSWDGDGLRLSLAIDSYIYFANIRPDYKWGYCGNTVV 1020
Query: 123 FAFTVPDKIEESVMFWNVHTNERRMKSVRGLQYLSAWKDACVL 165
+AF PD+ + SV+FW E +K ++ L ++A+ D C++
Sbjct: 1021YAFNKPDRQDSSVVFWETKNKECIVKYIKNLLGITAYGDYCLI 1149
>ref|XM_001749392.1| Monosiga brevicollis MX1 predicted protein MONBRDRAFT_34149 mRNA,
complete cds
Length = 3825
Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats.
Identities = 67/162 (41%), Positives = 103/162 (63%)
Frame = +1
Query: 4 LAVCYQHGRIQLMASIGDEAPYVMDSDIPIQFVSWNPHGTVLAVSAVMPTATVDASLVVT 63
LA+CY++GR+QLM +I D P ++D+ + I WN +GTVLAV+ + TA +
Sbjct: 658 LAICYENGRMQLMRNITDSKPILVDAMMRICAAKWNHNGTVLAVAGIENTAGSEEQTCTV 837
Query: 64 QFFSNEGIHLRTLRVAGKQCGGIAWEGGGLRVAIAVDASVYFANVRPEYKYCYFKKTVVF 123
QF+S G H R+L V G G+AWE GGL++++ VD ++FANVRP+Y + +F TVV+
Sbjct: 838 QFYSPTGEHQRSLHVPGSDISGLAWELGGLKLSLTVDNFIFFANVRPDYFWGHFDNTVVY 1017
Query: 124 AFTVPDKIEESVMFWNVHTNERRMKSVRGLQYLSAWKDACVL 165
AF+ P + E V+FW+V +K ++ L ++A D C+L
Sbjct: 1018AFSKPQRDEHCVVFWDVKRKHHTVKYIKNLVNIAAAGDRCIL 1143
>ref|XM_394812.2| PREDICTED: Apis mellifera similar to WD repeat domain 35
(LOC411338), mRNA
Length = 3558
Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 66/165 (40%), Positives = 105/165 (63%), Gaps = 2/165 (1%)
Frame = +1
Query: 3 TLAVCYQHGRIQLMASIGDEAPYVMDSDIPIQFVSWNPHGTVLAVSAVMPTATVDAS--L 60
TLAVCY++G+IQLM D+ P V+++ + + WN +G++LAV+ ++P + +
Sbjct: 685 TLAVCYRNGKIQLMKDTNDDNPIVIETGMTAAWCCWNSYGSILAVTGMIPLLGNGEAKDI 864
Query: 61 VVTQFFSNEGIHLRTLRVAGKQCGGIAWEGGGLRVAIAVDASVYFANVRPEYKYCYFKKT 120
V QF++ G H+RTL++ G++ AWEGG LRVA++VD+ +YFAN+R +YK+ YF T
Sbjct: 865 NVIQFYTPFGKHMRTLKIPGREVTCCAWEGGSLRVALSVDSHIYFANIRLDYKWTYFSNT 1044
Query: 121 VVFAFTVPDKIEESVMFWNVHTNERRMKSVRGLQYLSAWKDACVL 165
VV+ K ++FWN N K+VR L ++++ D CVL
Sbjct: 1045VVYTNEKITKDGICIIFWNTTNNTYCTKNVRALISIASYGDHCVL 1179
>ref|XM_002131498.1| PREDICTED: Ciona intestinalis similar to WD repeat domain 35
(LOC100185035), mRNA
Length = 3902
Score = 138 bits (348), Expect = 6e-31, Method: Composition-based stats.
Identities = 65/163 (39%), Positives = 101/163 (61%)
Frame = +3
Query: 4 LAVCYQHGRIQLMASIGDEAPYVMDSDIPIQFVSWNPHGTVLAVSAVMPTATVDASLVVT 63
L +C+ +GR Q+M D+ P ++D+ + WN G++LA++ + D + V
Sbjct: 825 LVICFDNGRCQIMRDEVDDKPILIDTKMDAIDAKWNDTGSILAIAGSQRSIQQDKDINVV 1004
Query: 64 QFFSNEGIHLRTLRVAGKQCGGIAWEGGGLRVAIAVDASVYFANVRPEYKYCYFKKTVVF 123
QFFS+ G L TL+V GKQ + WE G LRVA+AVD+ +YFAN+RP+YK+ Y + TV++
Sbjct: 1005QFFSSFGEPLYTLKVPGKQIQSLDWEKGSLRVALAVDSFIYFANIRPDYKWGYCEHTVIY 1184
Query: 124 AFTVPDKIEESVMFWNVHTNERRMKSVRGLQYLSAWKDACVLV 166
AF P++ E V+FW+ T E+ +K V+ L + A + C LV
Sbjct: 1185AFIKPERAEHCVIFWDWKTKEKYVKYVKHLMLMEASGNHCCLV 1313
>ref|XM_001607716.1| PREDICTED: Nasonia vitripennis similar to rCG62265 (LOC100123972),
mRNA
Length = 3396
Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats.
Identities = 69/162 (42%), Positives = 100/162 (61%)
Frame = +1
Query: 4 LAVCYQHGRIQLMASIGDEAPYVMDSDIPIQFVSWNPHGTVLAVSAVMPTATVDASLVVT 63
LAVC+Q GR+ L+ I DE P V+D+ + + WN +G++LA++ ++ + S V+
Sbjct: 691 LAVCFQSGRMVLLRDISDENPIVVDTGMTMACCVWNTYGSLLAIAGILMGEDKNNSNVLC 870
Query: 64 QFFSNEGIHLRTLRVAGKQCGGIAWEGGGLRVAIAVDASVYFANVRPEYKYCYFKKTVVF 123
F+S+ G HL++L++ GK AWEGG LR+A++VD+++YFAN+RP YK+ YF TVVF
Sbjct: 871 -FYSSLGDHLKSLKIPGKDISCCAWEGGSLRIALSVDSNIYFANIRPNYKWAYFGTTVVF 1047
Query: 124 AFTVPDKIEESVMFWNVHTNERRMKSVRGLQYLSAWKDACVL 165
K V FWN TN R K V L + A D CVL
Sbjct: 1048TDDKVGKEGVCVTFWNTVTNARYFKYVSSLISIVACGDHCVL 1173
>ref|XM_001659501.1| Aedes aegypti wd-repeat protein partial mRNA
Length = 3669
Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats.
Identities = 64/164 (39%), Positives = 106/164 (64%), Gaps = 2/164 (1%)
Frame = +1
Query: 4 LAVCYQHGRIQLMASIGDEAPYVMDSDIPIQFVSWNPHGTVLAVSAVMPTATVDASLVVT 63
LAVCY++G++Q+M + D+AP ++D+++ WN GT++AV M T D +
Sbjct: 676 LAVCYENGKMQIMRNENDDAPVIVDTNMQAISCMWNHDGTIIAVCG-MKTNLNDKEINQV 852
Query: 64 QFFSNEGIHLRTLRVAGKQCGGIAWEGGGLRVAIAVDASVYFANVRPEYKYCYFKKTVVF 123
QF++ G+H+R+L++ GK+ ++WEG LR+A++VD+ +YFAN+RP+Y +CYF KTV +
Sbjct: 853 QFYTPYGVHIRSLKIPGKEITSLSWEGKSLRIALSVDSFIYFANIRPDYTWCYFNKTVCY 1032
Query: 124 AFTVPDKIEES--VMFWNVHTNERRMKSVRGLQYLSAWKDACVL 165
K EES + FW+ ++N+ K V + ++A D CVL
Sbjct: 1033LEAT--KTEESSLISFWDTNSNQCYSKQVDPIIAMTATTDHCVL 1158
>ref|XM_002160231.1| PREDICTED: Hydra magnipapillata similar to WD repeat domain 35
(LOC100200981), partial mRNA
Length = 1632
Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats.
Identities = 65/163 (39%), Positives = 102/163 (62%)
Frame = +1
Query: 4 LAVCYQHGRIQLMASIGDEAPYVMDSDIPIQFVSWNPHGTVLAVSAVMPTATVDASLVVT 63
LA+ Y++G+ Q+M DE P ++++++ + W +G++ AV+ + D + V
Sbjct: 667 LAISYENGKCQIMRDELDELPVLINTNMRVVSFKWCHNGSMFAVAGSVANQDKDVNCV-- 840
Query: 64 QFFSNEGIHLRTLRVAGKQCGGIAWEGGGLRVAIAVDASVYFANVRPEYKYCYFKKTVVF 123
QF++ G HLRTL+V GK + WEGG LR+A+ VD +YFAN+RP YK+ YF T+V+
Sbjct: 841 QFYTPFGEHLRTLKVPGKDLTSLTWEGGSLRIALTVDTFIYFANIRPNYKWGYFADTLVY 1020
Query: 124 AFTVPDKIEESVMFWNVHTNERRMKSVRGLQYLSAWKDACVLV 166
AFT P++ E V+FW+ +ER +K VR L + D CVL+
Sbjct: 1021AFTRPNRREWCVIFWDTKGSERYIKYVRNLVNIVTAADHCVLM 1149
>ref|XM_309945.3| Anopheles gambiae str. PEST AGAP011562-PA (AgaP_AGAP011562) mRNA,
complete cds
Length = 3594
Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats.
Identities = 62/168 (36%), Positives = 103/168 (61%), Gaps = 6/168 (3%)
Frame = +1
Query: 4 LAVCYQHGRIQLMASIGDEAPYVMDSDIPIQFVSWNPHGTVLAVSAVMPTATVDASLVVT 63
LA+CY++GR+QLM + D+AP V+D+ + WN GT+LAV + D
Sbjct: 682 LAICYENGRMQLMRNENDDAPVVVDTGLQTISCMWNHDGTILAVCGMKTNLASDKDSSQV 861
Query: 64 QFFSNEGIHLRTLRVAGKQCGGIAWEGGGLRVAIAVDASVYFANVRPEYKYCYFKKTVVF 123
F++ G+H+RTL++ GK+ ++WEG LR+A++VD+ +YFAN+RP+Y +CYF +TV +
Sbjct: 862 MFYTPYGVHIRTLKIPGKEITSLSWEGKSLRIALSVDSFIYFANIRPDYNWCYFNRTVCY 1041
Query: 124 ------AFTVPDKIEESVMFWNVHTNERRMKSVRGLQYLSAWKDACVL 165
D++ ++V FW+ ++N+ K + L ++A D CVL
Sbjct: 1042QEAIAIGGGGGDEV-DTVTFWDTNSNQCYAKQIDALMSMAASVDHCVL 1182
>ref|XM_001862976.1| Culex quinquefasciatus WD repeat protein 35, mRNA
Length = 3576
Score = 135 bits (340), Expect = 5e-30, Method: Composition-based stats.
Identities = 62/162 (38%), Positives = 103/162 (63%)
Frame = +1
Query: 4 LAVCYQHGRIQLMASIGDEAPYVMDSDIPIQFVSWNPHGTVLAVSAVMPTATVDASLVVT 63
LAVCY++G++Q+M S D++P ++D++I WN G+++AV M T D +
Sbjct: 691 LAVCYENGKMQIMRSENDDSPVIVDTNIQAISCMWNHDGSIIAVCG-MKTNLNDKEVNQV 867
Query: 64 QFFSNEGIHLRTLRVAGKQCGGIAWEGGGLRVAIAVDASVYFANVRPEYKYCYFKKTVVF 123
QF++ GIH+RTL++ GK+ ++WEG LR+A++VD+ +YFAN+RP+Y +CYF KTV +
Sbjct: 868 QFYTPYGIHIRTLKIPGKEITCLSWEGKSLRIALSVDSFIYFANIRPDYTWCYFNKTVCY 1047
Query: 124 AFTVPDKIEESVMFWNVHTNERRMKSVRGLQYLSAWKDACVL 165
+ + FW+ ++N+ K V + ++A D CVL
Sbjct: 1048LEATKAEDTSLITFWDTNSNQCYSKQVDPIIGIAATVDHCVL 1173
>ref|XM_002034935.1| Drosophila sechellia GM14175 (Dsec\GM14175), mRNA
Length = 3597
Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats.
Identities = 68/170 (40%), Positives = 102/170 (60%), Gaps = 8/170 (4%)
Frame = +1
Query: 4 LAVCYQHGRIQLMASIGDEAPYVMDSDIPIQFVSWNPHGTVLAV-----SAVMPTATVDA 58
LA+CY++GR+Q+M + D+AP + D+ + WN GTVLA+ AV PT+ D+
Sbjct: 691 LAICYENGRVQIMRNENDDAPAIFDTGMRNVDAKWNHDGTVLAICGTTLDAVSPTSQRDS 870
Query: 59 SLVVTQFFSNEGIHLRTLRVAGKQCGGIAWEGGGLRVAIAVDASVYFANVRPEYKYCYFK 118
+ V +F+S G RTL+V G ++WEG LR+A+AVD+ +YFAN+RP+Y +CYF+
Sbjct: 871 NQV--RFYSPLGKIYRTLKVPGTDITSLSWEGKSLRIAMAVDSFIYFANIRPDYIWCYFE 1044
Query: 119 KTVVF---AFTVPDKIEESVMFWNVHTNERRMKSVRGLQYLSAWKDACVL 165
KTVVF D + FWN +N+ +K V L++ + CVL
Sbjct: 1045KTVVFLNSGSATRDSPMSVITFWNTVSNQSFLKEVEPTLCLASSSEHCVL 1194
>ref|XM_001955936.1| Drosophila ananassae GF24968 (Dana\GF24968), mRNA
Length = 3618
Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats.
Identities = 67/171 (39%), Positives = 102/171 (59%), Gaps = 9/171 (5%)
Frame = +1
Query: 4 LAVCYQHGRIQLMASIGDEAPYVMDSDIPIQFVSWNPHGTVLAV-----SAVMPTATVDA 58
LA+CY++GR+Q+M + D+AP + D+ + WN GTVLA+ V P + ++
Sbjct: 688 LAICYENGRVQIMRNENDDAPAIFDTGMRNVDAKWNHDGTVLAICGTLLDTVTPPSQRES 867
Query: 59 SLVVTQFFSNEGIHLRTLRVAGKQCGGIAWEGGGLRVAIAVDASVYFANVRPEYKYCYFK 118
+ V F+S G RTL+V G ++WEG LR+A+AVD+ +YFAN+RP+Y +CYF+
Sbjct: 868 NQVC--FYSQLGSLFRTLKVPGSDITSLSWEGKSLRIAMAVDSFIYFANIRPDYIWCYFE 1041
Query: 119 KTVVFAFTVPDKIEESVM----FWNVHTNERRMKSVRGLQYLSAWKDACVL 165
KTVVF + + +S M FWN +N+ +K V L+A + CVL
Sbjct: 1042KTVVFLNSGSSGVRDSPMSVITFWNTASNQSFLKEVEPTLCLAASSEHCVL 1194
>ref|XM_002093147.1| Drosophila yakuba GE20921 (Dyak\GE20921), mRNA
Length = 3618
Score = 129 bits (323), Expect = 5e-28, Method: Composition-based stats.
Identities = 68/170 (40%), Positives = 101/170 (59%), Gaps = 8/170 (4%)
Frame = +1
Query: 4 LAVCYQHGRIQLMASIGDEAPYVMDSDIPIQFVSWNPHGTVLAV-----SAVMPTATVDA 58
LA+CY++GR+Q+M + D+AP + D+ + WN GTVLA+ AV PT+ D+
Sbjct: 691 LAICYENGRVQIMRNENDDAPAIFDTGMRNVDAKWNHDGTVLAICGTTMDAVGPTSQRDS 870
Query: 59 SLVVTQFFSNEGIHLRTLRVAGKQCGGIAWEGGGLRVAIAVDASVYFANVRPEYKYCYFK 118
+ V F+S G RTL+V G ++WEG LR+A+AVD+ +YFAN+RP+Y +CYF+
Sbjct: 871 NQV--GFYSPLGKIYRTLKVPGNDITSLSWEGKSLRIAMAVDSFIYFANIRPDYIWCYFE 1044
Query: 119 KTVVF---AFTVPDKIEESVMFWNVHTNERRMKSVRGLQYLSAWKDACVL 165
KTVVF D + FWN +N+ +K V L++ + CVL
Sbjct: 1045KTVVFLNSGSATRDSPMSVITFWNTVSNQSFLKEVEPTLCLASSSEHCVL 1194
>gb|FJ636651.1| Synthetic construct Drosophila melanogaster clone BS10423 encodes
Oseg4-RA
Length = 3650
Score = 127 bits (320), Expect = 9e-28, Method: Composition-based stats.
Identities = 70/171 (40%), Positives = 101/171 (59%), Gaps = 9/171 (5%)
Frame = +2
Query: 4 LAVCYQHGRIQLMASIGDEAPYVMDSDIPIQFVSWNPHGTVLAV-----SAVMPTATVDA 58
LA+CY++GR+Q+M + D+AP + D+ + WN GTVLA+ AV PT+ D
Sbjct: 707 LAICYENGRVQIMRNENDDAPAIFDTGMRNVDAKWNHDGTVLAICGTTLDAVSPTSQRDT 886
Query: 59 SLVVTQFFSNEGIHLRTLRVAGKQCGGIAWEGGGLRVAIAVDASVYFANVRPEYKYCYFK 118
+ V F+S G RTL+V G ++WEG LR+A+AVD+ +YFAN+RP+Y +CYF+
Sbjct: 887 NQVC--FYSPLGKIYRTLKVPGTDITSLSWEGKSLRIAMAVDSFIYFANIRPDYIWCYFE 1060
Query: 119 KTVVFAFTVPDKIEESVM----FWNVHTNERRMKSVRGLQYLSAWKDACVL 165
KTVVF ES M FWN +N+ +K V L++ + CVL
Sbjct: 1061KTVVF-LNSGSATRESPMSVITFWNTVSNQSFLKEVEPTLCLASSSEHCVL 1210
>gb|FJ631885.1| Synthetic construct Drosophila melanogaster clone BO10823 encodes
Oseg4-RA
Length = 3649
Score = 127 bits (320), Expect = 9e-28, Method: Composition-based stats.
Identities = 70/171 (40%), Positives = 101/171 (59%), Gaps = 9/171 (5%)
Frame = +2
Query: 4 LAVCYQHGRIQLMASIGDEAPYVMDSDIPIQFVSWNPHGTVLAV-----SAVMPTATVDA 58
LA+CY++GR+Q+M + D+AP + D+ + WN GTVLA+ AV PT+ D
Sbjct: 707 LAICYENGRVQIMRNENDDAPAIFDTGMRNVDAKWNHDGTVLAICGTTLDAVSPTSQRDT 886
Query: 59 SLVVTQFFSNEGIHLRTLRVAGKQCGGIAWEGGGLRVAIAVDASVYFANVRPEYKYCYFK 118
+ V F+S G RTL+V G ++WEG LR+A+AVD+ +YFAN+RP+Y +CYF+
Sbjct: 887 NQVC--FYSPLGKIYRTLKVPGTDITSLSWEGKSLRIAMAVDSFIYFANIRPDYIWCYFE 1060
Query: 119 KTVVFAFTVPDKIEESVM----FWNVHTNERRMKSVRGLQYLSAWKDACVL 165
KTVVF ES M FWN +N+ +K V L++ + CVL
Sbjct: 1061KTVVF-LNSGSATRESPMSVITFWNTVSNQSFLKEVEPTLCLASSSEHCVL 1210
>ref|NM_139396.3| Drosophila melanogaster Oseg4 (Oseg4), mRNA
Length = 4119
Score = 127 bits (320), Expect = 9e-28, Method: Composition-based stats.
Identities = 70/171 (40%), Positives = 101/171 (59%), Gaps = 9/171 (5%)
Frame = +2
Query: 4 LAVCYQHGRIQLMASIGDEAPYVMDSDIPIQFVSWNPHGTVLAV-----SAVMPTATVDA 58
LA+CY++GR+Q+M + D+AP + D+ + WN GTVLA+ AV PT+ D
Sbjct: 857 LAICYENGRVQIMRNENDDAPAIFDTGMRNVDAKWNHDGTVLAICGTTLDAVSPTSQRDT 1036
Query: 59 SLVVTQFFSNEGIHLRTLRVAGKQCGGIAWEGGGLRVAIAVDASVYFANVRPEYKYCYFK 118
+ V F+S G RTL+V G ++WEG LR+A+AVD+ +YFAN+RP+Y +CYF+
Sbjct: 1037 NQVC--FYSPLGKIYRTLKVPGTDITSLSWEGKSLRIAMAVDSFIYFANIRPDYIWCYFE 1210
Query: 119 KTVVFAFTVPDKIEESVM----FWNVHTNERRMKSVRGLQYLSAWKDACVL 165
KTVVF ES M FWN +N+ +K V L++ + CVL
Sbjct: 1211 KTVVF-LNSGSATRESPMSVITFWNTVSNQSFLKEVEPTLCLASSSEHCVL 1360
>gb|AY061373.1| Drosophila melanogaster LD29485 full length cDNA
Length = 4009
Score = 127 bits (320), Expect = 9e-28, Method: Composition-based stats.
Identities = 70/171 (40%), Positives = 101/171 (59%), Gaps = 9/171 (5%)
Frame = +2
Query: 4 LAVCYQHGRIQLMASIGDEAPYVMDSDIPIQFVSWNPHGTVLAV-----SAVMPTATVDA 58
LA+CY++GR+Q+M + D+AP + D+ + WN GTVLA+ AV PT+ D
Sbjct: 728 LAICYENGRVQIMRNENDDAPAIFDTGMRNVDAKWNHDGTVLAICGTTLDAVSPTSQRDT 907
Query: 59 SLVVTQFFSNEGIHLRTLRVAGKQCGGIAWEGGGLRVAIAVDASVYFANVRPEYKYCYFK 118
+ V F+S G RTL+V G ++WEG LR+A+AVD+ +YFAN+RP+Y +CYF+
Sbjct: 908 NQVC--FYSPLGKIYRTLKVPGTDITSLSWEGKSLRIAMAVDSFIYFANIRPDYIWCYFE 1081
Query: 119 KTVVFAFTVPDKIEESVM----FWNVHTNERRMKSVRGLQYLSAWKDACVL 165
KTVVF ES M FWN +N+ +K V L++ + CVL
Sbjct: 1082KTVVF-LNSGSATRESPMSVITFWNTVSNQSFLKEVEPTLCLASSSEHCVL 1231
>ref|XM_001971154.1| Drosophila erecta GG14567 (Dere\GG14567), mRNA
Length = 3618
Score = 122 bits (306), Expect = 4e-26, Method: Composition-based stats.
Identities = 64/170 (37%), Positives = 99/170 (58%), Gaps = 8/170 (4%)
Frame = +1
Query: 4 LAVCYQHGRIQLMASIGDEAPYVMDSDIPIQFVSWNPHGTVLAV-----SAVMPTATVDA 58
LA+CY++GR+Q+M + D+AP + D+ + WN GTVLA+ + ++ D+
Sbjct: 691 LAICYENGRVQIMRNENDDAPAIFDTGMRNVDAKWNHDGTVLAICGTSMDGLSASSQRDS 870
Query: 59 SLVVTQFFSNEGIHLRTLRVAGKQCGGIAWEGGGLRVAIAVDASVYFANVRPEYKYCYFK 118
+ V F+S G RTL+V G ++WEG LR+A+AVD+ +YFAN+RP+Y +CYF+
Sbjct: 871 NQVC--FYSPLGKIYRTLKVPGNDITSLSWEGKSLRIAMAVDSFIYFANIRPDYIWCYFE 1044
Query: 119 KTVVF---AFTVPDKIEESVMFWNVHTNERRMKSVRGLQYLSAWKDACVL 165
KTVVF D + FWN +N+ +K V L++ + CVL
Sbjct: 1045KTVVFLNSGSATRDSPMSVITFWNTVSNQSFLKEVEPTLCLASSSEHCVL 1194
>ref|XM_001948856.1| PREDICTED: Acyrthosiphon pisum similar to WD repeat domain 35
(LOC100169428), mRNA
Length = 3558
Score = 121 bits (304), Expect = 7e-26, Method: Composition-based stats.
Identities = 64/165 (38%), Positives = 92/165 (55%), Gaps = 3/165 (1%)
Frame = +1
Query: 4 LAVCYQHGRIQLMASIGDEAPYVMDSDIPIQFVSWNPHGTVLAVSAVMPTATVDASLV-- 61
LA+ Y+ G +QLM D P V + D+ I + WN +G+VLA+ + T VD +
Sbjct: 670 LAIAYKTGHVQLMRDQYDMNPVVFECDMLIVAIKWNHNGSVLAL---VGTLIVDGDVKES 840
Query: 62 -VTQFFSNEGIHLRTLRVAGKQCGGIAWEGGGLRVAIAVDASVYFANVRPEYKYCYFKKT 120
V Q +S G HLRTLR+ G WE LR+ +A+D+ VYFANVR +Y +CYF T
Sbjct: 841 NVLQLYSPFGEHLRTLRIPGYMVSSCCWESTSLRITLAIDSFVYFANVRYDYPWCYFAGT 1020
Query: 121 VVFAFTVPDKIEESVMFWNVHTNERRMKSVRGLQYLSAWKDACVL 165
+V+A+ ++ + FWN+ NE L + A+KD CVL
Sbjct: 1021IVYAYRNHEEAVTEITFWNIKKNEFYHTKFDSLLCMDAYKDHCVL 1155
>ref|XM_002025578.1| Drosophila persimilis GL20799 (Dper\GL20799), mRNA
Length = 3615
Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats.
Identities = 66/174 (37%), Positives = 100/174 (57%), Gaps = 12/174 (6%)
Frame = +1
Query: 4 LAVCYQHGRIQLMASIGDEAPYVMDSDIPIQFVSWNPHGTVLAVSAV-----MPTATVDA 58
LA+CY+ G++Q+M + D+ P + D+ + WN GTVLA+ +P A D
Sbjct: 688 LAICYEIGKVQIMRNENDDEPAIFDTKMRNVDAKWNHDGTVLAICGTTLEQTVPAAQRDN 867
Query: 59 SLVVTQFFSNEGIHLRTLRVAGKQCGGIAWEGGGLRVAIAVDASVYFANVRPEYKYCYFK 118
+ V F+S G RTL+V G ++WEG LR+A+AVD+ +YFAN+RP+Y +CYF+
Sbjct: 868 NQVC--FYSPLGRIYRTLKVPGSDITSLSWEGKSLRIAMAVDSFIYFANIRPDYIWCYFE 1041
Query: 119 KTVVFA---FTVPDKIEESVM----FWNVHTNERRMKSVRGLQYLSAWKDACVL 165
KTVVF + + + E+ M FWN +N+ +K V L+A + CVL
Sbjct: 1042KTVVFLNSHSSSGNGVRETPMSVITFWNTVSNQSFLKEVEPTLCLAASSEHCVL 1203
>ref|XM_002062442.1| Drosophila willistoni GK17561 (Dwil\GK17561), mRNA
Length = 3675
Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats.
Identities = 63/172 (36%), Positives = 95/172 (55%), Gaps = 10/172 (5%)
Frame = +1
Query: 4 LAVCYQHGRIQLMASIGDEAPYVMDSDIPIQFVSWNPHGTVLAVSAVMPTATVDASLVVT 63
LA+CY++G++Q+M + D+AP + D+ + WN G+VLA+ A L T
Sbjct: 703 LAICYENGKVQIMRNENDDAPAIFDTGMRNVDAKWNHDGSVLAICGTTLDTVTPAPLRDT 882
Query: 64 Q---FFSNEGIHLRTLRVAGKQCGGIAWEGGGLRVAIAVDASVYFANVRPEYKYCYFKKT 120
F+S G RTL+V G ++WEG LR+A+AVD+ +YFAN+RP+Y +CYF+KT
Sbjct: 883 NQVCFYSPLGRLYRTLKVPGSDITSLSWEGKSLRIAMAVDSFIYFANIRPDYIWCYFEKT 1062
Query: 121 VVF-------AFTVPDKIEESVMFWNVHTNERRMKSVRGLQYLSAWKDACVL 165
VVF + + FWN +N+ +K V L+A + CVL
Sbjct: 1063VVFLSGSSSSSSGKDPSSTNVITFWNTVSNQSFLKEVEPTLSLAASSEHCVL 1218
>ref|XM_001352719.2| Drosophila pseudoobscura pseudoobscura GA15220 (Dpse\GA15220), mRNA
Length = 3615
Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats.
Identities = 66/174 (37%), Positives = 100/174 (57%), Gaps = 12/174 (6%)
Frame = +1
Query: 4 LAVCYQHGRIQLMASIGDEAPYVMDSDIPIQFVSWNPHGTVLAVSAV-----MPTATVDA 58
LA+CY+ G++Q+M + D+ P + D+ + WN GTVLA+ +P A D
Sbjct: 688 LAICYEIGKVQIMRNENDDEPAIFDTKMRNVDAKWNHDGTVLAICGTTLEQTVPPAQRDN 867
Query: 59 SLVVTQFFSNEGIHLRTLRVAGKQCGGIAWEGGGLRVAIAVDASVYFANVRPEYKYCYFK 118
+ V F+S G RTL+V G ++WEG LR+A+AVD+ +YFAN+RP+Y +CYF+
Sbjct: 868 NQVC--FYSPLGRIYRTLKVPGSDITSLSWEGKSLRIAMAVDSFIYFANIRPDYIWCYFE 1041
Query: 119 KTVVFA---FTVPDKIEESVM----FWNVHTNERRMKSVRGLQYLSAWKDACVL 165
KTVVF + + + E+ M FWN +N+ +K V L+A + CVL
Sbjct: 1042KTVVFLNSHSSSGNGVRETPMSVITFWNTVSNQSFLKEVEPTLCLAASSEHCVL 1203
>ref|XM_001752789.1| Physcomitrella patens subsp. patens intraflagellar transport protein
IFT122 (PHYPADRAFT_65521) mRNA, complete cds
Length = 4413
Score = 119 bits (297), Expect = 4e-25, Method: Composition-based stats.
Identities = 70/210 (33%), Positives = 100/210 (47%), Gaps = 47/210 (22%)
Frame = +1
Query: 3 TLAVCYQHGRIQLMASIGDEAPYVMDSDIPIQFVSWNPHGTVLAVSAVMPTATVDASLVV 62
+LA+ +Q G+IQLM DE P +++ + I + W+P G VL V + V A +
Sbjct: 1417 SLALAFQLGKIQLMRHEMDEEPILLELQMTITCIKWSPDGDVLGVVGSDVSTNVKAPSSI 1596
Query: 63 TQFFSNEGIHLRTLRVAGKQC--------------------------------------- 83
Q FS+ G+HLRTLRV G +
Sbjct: 1597 VQLFSHTGVHLRTLRVPGARTRYSGIFCRFTTLLASTMMRYYLLHTIVLHASVSLCKTLL 1776
Query: 84 -------GGIAWEGGGLRVAIAVDASVYFANVRPEYKYCYF-KKTVVFAFTVPDKIEESV 135
++WEGGGLR+A+AVD+ +Y AN+R EYK+ +F T V+ F D + SV
Sbjct: 1777 TAAYQNDSALSWEGGGLRLALAVDSYIYLANIRLEYKWAFFGSSTCVYGFKKKDHSDHSV 1956
Query: 136 MFWNVHTNERRMKSVRGLQYLSAWKDACVL 165
MFW++ T ER K V L + A + CVL
Sbjct: 1957 MFWDIVTGERYCKCVNHLIAVCAASEFCVL 2046
>ref|XM_001983152.1| Drosophila grimshawi GH15725 (Dgri\GH15725), mRNA
Length = 3621
Score = 119 bits (297), Expect = 4e-25, Method: Composition-based stats.
Identities = 64/172 (37%), Positives = 97/172 (56%), Gaps = 10/172 (5%)
Frame = +1
Query: 4 LAVCYQHGRIQLMASIGDEAPYVMDSDIPIQFVSWNPHGTVLAVSAVMPTATVDASLVVT 63
LA+C+++G +Q+M + D+AP + D+ + WN +G+VLA+ A V T
Sbjct: 700 LAICFENGMVQIMRNENDDAPAIFDTGMRNVDSKWNHNGSVLAICGTSLEAAVATPQRET 879
Query: 64 Q---FFSNEGIHLRTLRVAGKQCGGIAWEGGGLRVAIAVDASVYFANVRPEYKYCYFKKT 120
F+S G RTL+V G + ++WEG LR+A+AVD+ +YFAN+RPEY +CYF+KT
Sbjct: 880 NQVCFYSPLGRLYRTLKVPGSEITSVSWEGKSLRIAMAVDSFIYFANIRPEYIWCYFEKT 1059
Query: 121 VVFAFTVPDKIEES-------VMFWNVHTNERRMKSVRGLQYLSAWKDACVL 165
VVF + + + FWN +N+ +K V LSA + CVL
Sbjct: 1060VVFLNSSSSGNSGNSGSPMNVITFWNTVSNQSFLKEVEPTICLSASAEHCVL 1215
>ref|XM_001009043.1| Tetrahymena thermophila SB210 hypothetical protein
(TTHERM_00261950) partial mRNA
Length = 3621
Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats.
Identities = 63/166 (37%), Positives = 104/166 (62%), Gaps = 3/166 (1%)
Frame = +1
Query: 4 LAVCYQHGRIQLMASIGDEAPYVMDSDIPIQFVSWNPHGTVLAVSAVMPTATVDASLV-V 62
L + Y GR+ LM + D+ P ++D+ + I V WNP G++ A+S T + L V
Sbjct: 700 LCIAY*CGRV*LMKNEKDDEPVLIDTMMKIFTVKWNPSGSMFAISG---T*DENGELKGV 870
Query: 63 TQFFSNEGIHLRTLRVAGK-QCGGIAWEGGGLRVAIAVDASVYFANVRPEYKYCYFKK-T 120
F+SN G HL+TLRV G + G++WEG GLR+A+AV+ +++FAN++P++K+ Y T
Sbjct: 871 V*FYSNAGHHLKTLRVPGSDRVTGVSWEGSGLRIAMAVN*AIFFANIKPDHKWAYMSDGT 1050
Query: 121 VVFAFTVPDKIEESVMFWNVHTNERRMKSVRGLQYLSAWKDACVLV 166
+ FA+ D++E +++FW+ N++ +K V+ L L A D C +V
Sbjct: 1051LAFAY*KIDRVEYTIIFWDTINNKKNLKFVKNLCCLRASGDLCCIV 1188
>ref|XM_001370317.1| PREDICTED: Monodelphis domestica hypothetical protein LOC100016539
(LOC100016539), mRNA
Length = 3543
Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats.
Identities = 54/122 (44%), Positives = 80/122 (65%)
Frame = +1
Query: 44 VLAVSAVMPTATVDASLVVTQFFSNEGIHLRTLRVAGKQCGGIAWEGGGLRVAIAVDASV 103
V+A+ V + T D + QFF HLRTL+V GKQ ++WEGGGL++ +AVD+ +
Sbjct: 829 VIALLLVEKSVTFDFLMGFLQFFIPFSKHLRTLKVPGKQMSALSWEGGGLKIGLAVDSFI 1008
Query: 104 YFANVRPEYKYCYFKKTVVFAFTVPDKIEESVMFWNVHTNERRMKSVRGLQYLSAWKDAC 163
YFAN+RP+YK+ Y TVV+A+T PD+ E V+FW+ NE+ +K V+ L ++ D C
Sbjct: 1009YFANIRPDYKWGYCSNTVVYAYTRPDRPEYCVVFWDTKNNEKYVKYVKSLISITTCGDFC 1188
Query: 164 VL 165
+L
Sbjct: 1189IL 1194
>ref|XM_002060252.1| Drosophila virilis GJ16079 (Dvir\GJ16079), mRNA
Length = 3573
Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats.
Identities = 67/181 (37%), Positives = 98/181 (54%), Gaps = 19/181 (10%)
Frame = +1
Query: 4 LAVCYQHGRIQLMASIGDEAPYVMDSDIPIQFVSWNPHGTVLAV-----SAVMPTATVDA 58
LA+CY++G++Q+M + D+AP + D+ + WN G+VLA+ AV P D
Sbjct: 688 LAICYENGKVQIMRNENDDAPAIFDTGMRNVDAKWNHDGSVLAICGTSLEAVSPLR--DT 861
Query: 59 SLVVTQFFSNEGIHLRTLRVAGKQCGGIAWEGGGLRVAIAVDASVYFANVRPEYKYCYFK 118
+ V F+S G RTL+V G + WEG LR+A+AVD+ +YFAN+RPEY +CYF+
Sbjct: 862 NQVC--FYSPLGRLHRTLKVPGSDITSVTWEGKSLRIAMAVDSFIYFANIRPEYIWCYFE 1035
Query: 119 KTVVFAFTVPDKIEES--------------VMFWNVHTNERRMKSVRGLQYLSAWKDACV 164
KTVVF + S + FWN +N+ +K V L+A + CV
Sbjct: 1036KTVVFLNSRSSSKNNSGSSASSANVAPMNVITFWNTVSNQSFLKEVEPTLCLAASNEHCV 1215
Query: 165 L 165
L
Sbjct: 1216L 1218
>ref|XM_002007118.1| Drosophila mojavensis GI12779 (Dmoj\GI12779), mRNA
Length = 4590
Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats.
Identities = 62/175 (35%), Positives = 94/175 (53%), Gaps = 13/175 (7%)
Frame = +1
Query: 4 LAVCYQHGRIQLMASIGDEAPYVMDSDIPIQFVSWNPHGTVLAVSAVMPTATV---DASL 60
LA+CY++G++Q+M + D+ P + D+ + WN G+VLA+ A D +
Sbjct: 685 LAICYENGKVQIMRNENDDNPAIFDTGMRNVDAKWNHDGSVLAICGTSLEAASPMRDTNQ 864
Query: 61 VVTQFFSNEGIHLRTLRVAGKQCGGIAWEGGGLRVAIAVDASVYFANVRPEYKYCYFKKT 120
V F+S G RTL+V G ++WEG LR+A+AVD+ +YFAN+RPEY +CYF+KT
Sbjct: 865 VC--FYSPLGRLHRTLKVPGSDITSVSWEGKSLRIAMAVDSFIYFANIRPEYIWCYFEKT 1038
Query: 121 VVF----------AFTVPDKIEESVMFWNVHTNERRMKSVRGLQYLSAWKDACVL 165
VVF + FWN +N+ +K V L+A + CV+
Sbjct: 1039VVFLNSSNGNGGSGSGGSSSSTNVITFWNTVSNQSFLKEVEPTLCLAASNEHCVI 1203
>gb|AE014296.4| Drosophila melanogaster chromosome 3L, complete sequence
Length = 24543557
Score = 102 bits (253), Expect(2) = 2e-22, Method: Composition-based stats.
Identities = 61/152 (40%), Positives = 85/152 (55%), Gaps = 9/152 (5%)
Frame = -1
Query: 23 APYVMDSDIPIQFVSWNPHGTVLAV-----SAVMPTATVDASLVVTQFFSNEGIHLRTLR 77
AP + D+ + WN GTVLA+ AV PT+ D + V F+S G RTL+
Sbjct: 1734434 APAIFDTGMRNVDAKWNHDGTVLAICGTTLDAVSPTSQRDTNQVC--FYSPLGKIYRTLK 1734261
Query: 78 VAGKQCGGIAWEGGGLRVAIAVDASVYFANVRPEYKYCYFKKTVVFAFTVPDKIEESVM- 136
V G ++WEG LR+A+AVD+ +YFAN+RP+Y +CYF+KTVVF ES M
Sbjct: 1734260 VPGTDITSLSWEGKSLRIAMAVDSFIYFANIRPDYIWCYFEKTVVF-LNSGSATRESPMS 1734084
Query: 137 ---FWNVHTNERRMKSVRGLQYLSAWKDACVL 165
FWN +N+ +K V L++ + CVL
Sbjct: 1734083 VITFWNTVSNQSFLKEVEPTLCLASSSEHCVL 1733988
Score = 28.5 bits (62), Expect(2) = 2e-22, Method: Composition-based stats.
Identities = 9/20 (45%), Positives = 16/20 (80%)
Frame = -2
Query: 4 LAVCYQHGRIQLMASIGDEA 23
LA+CY++GR+Q+M + D+
Sbjct: 1734544 LAICYENGRVQIMRNENDDG 1734485
>gb|AC005557.1|AC005557 Drosophila melanogaster, chromosome 3L, region 62A10-62B5, P1 clones
DS02777, DS03222, DS02345, and DS04808, complete sequence
Length = 257867
Score = 102 bits (253), Expect(2) = 3e-22, Method: Composition-based stats.
Identities = 61/152 (40%), Positives = 85/152 (55%), Gaps = 9/152 (5%)
Frame = -2
Query: 23 APYVMDSDIPIQFVSWNPHGTVLAV-----SAVMPTATVDASLVVTQFFSNEGIHLRTLR 77
AP + D+ + WN GTVLA+ AV PT+ D + V F+S G RTL+
Sbjct: 122902 APAIFDTGMRNVDAKWNHDGTVLAICGTTLDAVSPTSQRDTNQVC--FYSPLGKIYRTLK 122729
Query: 78 VAGKQCGGIAWEGGGLRVAIAVDASVYFANVRPEYKYCYFKKTVVFAFTVPDKIEESVM- 136
V G ++WEG LR+A+AVD+ +YFAN+RP+Y +CYF+KTVVF ES M
Sbjct: 122728 VPGTDITSLSWEGKSLRIAMAVDSFIYFANIRPDYIWCYFEKTVVF-LNSGSATRESPMS 122552
Query: 137 ---FWNVHTNERRMKSVRGLQYLSAWKDACVL 165
FWN +N+ +K V L++ + CVL
Sbjct: 122551 VITFWNTVSNQSFLKEVEPTLCLASSSEHCVL 122456
Score = 28.5 bits (62), Expect(2) = 3e-22, Method: Composition-based stats.
Identities = 9/20 (45%), Positives = 16/20 (80%)
Frame = -3
Query: 4 LAVCYQHGRIQLMASIGDEA 23
LA+CY++GR+Q+M + D+
Sbjct: 123012 LAICYENGRVQIMRNENDDG 122953
>gb|AC105264.3| Drosophila melanogaster 3L BAC RP98-17K18 (Roswell Park Cancer Institute
Drosophila BAC Library) complete sequence
Length = 177583
Score = 102 bits (253), Expect(2) = 3e-22, Method: Composition-based stats.
Identities = 61/152 (40%), Positives = 85/152 (55%), Gaps = 9/152 (5%)
Frame = -1
Query: 23 APYVMDSDIPIQFVSWNPHGTVLAV-----SAVMPTATVDASLVVTQFFSNEGIHLRTLR 77
AP + D+ + WN GTVLA+ AV PT+ D + V F+S G RTL+
Sbjct: 122608 APAIFDTGMRNVDAKWNHDGTVLAICGTTLDAVSPTSQRDTNQVC--FYSPLGKIYRTLK 122435
Query: 78 VAGKQCGGIAWEGGGLRVAIAVDASVYFANVRPEYKYCYFKKTVVFAFTVPDKIEESVM- 136
V G ++WEG LR+A+AVD+ +YFAN+RP+Y +CYF+KTVVF ES M
Sbjct: 122434 VPGTDITSLSWEGKSLRIAMAVDSFIYFANIRPDYIWCYFEKTVVF-LNSGSATRESPMS 122258
Query: 137 ---FWNVHTNERRMKSVRGLQYLSAWKDACVL 165
FWN +N+ +K V L++ + CVL
Sbjct: 122257 VITFWNTVSNQSFLKEVEPTLCLASSSEHCVL 122162
Score = 28.5 bits (62), Expect(2) = 3e-22, Method: Composition-based stats.
Identities = 9/20 (45%), Positives = 16/20 (80%)
Frame = -2
Query: 4 LAVCYQHGRIQLMASIGDEA 23
LA+CY++GR+Q+M + D+
Sbjct: 122718 LAICYENGRVQIMRNENDDG 122659
>gb|AC010118.8| Drosophila melanogaster 3L BAC RP98-10D15 (Roswell Park Cancer
Institute Drosophila BAC Library) complete sequence
Length = 171868
Score = 102 bits (253), Expect(2) = 3e-22, Method: Composition-based stats.
Identities = 61/152 (40%), Positives = 85/152 (55%), Gaps = 9/152 (5%)
Frame = -2
Query: 23 APYVMDSDIPIQFVSWNPHGTVLAV-----SAVMPTATVDASLVVTQFFSNEGIHLRTLR 77
AP + D+ + WN GTVLA+ AV PT+ D + V F+S G RTL+
Sbjct: 9915 APAIFDTGMRNVDAKWNHDGTVLAICGTTLDAVSPTSQRDTNQVC--FYSPLGKIYRTLK 9742
Query: 78 VAGKQCGGIAWEGGGLRVAIAVDASVYFANVRPEYKYCYFKKTVVFAFTVPDKIEESVM- 136
V G ++WEG LR+A+AVD+ +YFAN+RP+Y +CYF+KTVVF ES M
Sbjct: 9741 VPGTDITSLSWEGKSLRIAMAVDSFIYFANIRPDYIWCYFEKTVVF-LNSGSATRESPMS 9565
Query: 137 ---FWNVHTNERRMKSVRGLQYLSAWKDACVL 165
FWN +N+ +K V L++ + CVL
Sbjct: 9564 VITFWNTVSNQSFLKEVEPTLCLASSSEHCVL 9469
Score = 28.5 bits (62), Expect(2) = 3e-22, Method: Composition-based stats.
Identities = 9/20 (45%), Positives = 16/20 (80%)
Frame = -3
Query: 4 LAVCYQHGRIQLMASIGDEA 23
LA+CY++GR+Q+M + D+
Sbjct: 10025 LAICYENGRVQIMRNENDDG 9966
>ref|XM_001423420.1| Paramecium tetraurelia hypothetical protein (GSPATT00000495001)
partial mRNA
Length = 3591
Score = 108 bits (270), Expect = 6e-22, Method: Composition-based stats.
Identities = 56/166 (33%), Positives = 99/166 (59%), Gaps = 3/166 (1%)
Frame = +1
Query: 4 LAVCYQHGRIQLMASIGDEAPYVMDSDIPIQFVSWNPHGTVLAVSAVMPTATVDASLVVT 63
L + Y GR+ LM + DE+P ++D+ + I V W+P+G++ AV+ D V
Sbjct: 706 LLIGYTCGRV*LMKNDKDESPILIDTVMAISSVRWSPNGSMFAVAG--SAKDKDEQRAVV 879
Query: 64 QFFSNEGIHLRTLRVAGK-QCGGIAWEGGGLRVAIAVDASVYFANVRPEYKYCYF--KKT 120
F+SN G HL+TLRVA + +++EG GLR+ + V +VY AN++ +YK+ Y +T
Sbjct: 880 *FYSNMGDHLKTLRVANTDKVNSLSFEGDGLRLVMGVGQTVYVANLKLDYKWSYLA*SET 1059
Query: 121 VVFAFTVPDKIEESVMFWNVHTNERRMKSVRGLQYLSAWKDACVLV 166
++FA+ D++E +++FW+ + ++ ++GL + D CVL+
Sbjct: 1060LIFAYQRQDRMEFTIIFWDTKRE*KSIRYMKGLLDIKGSNDCCVLI 1197
>ref|XM_001346844.1| Paramecium tetraurelia strain d4-2
Length = 3591
Score = 108 bits (270), Expect = 6e-22, Method: Composition-based stats.
Identities = 56/166 (33%), Positives = 99/166 (59%), Gaps = 3/166 (1%)
Frame = +1
Query: 4 LAVCYQHGRIQLMASIGDEAPYVMDSDIPIQFVSWNPHGTVLAVSAVMPTATVDASLVVT 63
L + Y GR+ LM + DE+P ++D+ + I V W+P+G++ AV+ D V
Sbjct: 706 LLIGYTCGRV*LMKNDKDESPILIDTVMAISSVRWSPNGSMFAVAG--SAKDKDEQRAVV 879
Query: 64 QFFSNEGIHLRTLRVAGK-QCGGIAWEGGGLRVAIAVDASVYFANVRPEYKYCYF--KKT 120
F+SN G HL+TLRVA + +++EG GLR+ + V +VY AN++ +YK+ Y +T
Sbjct: 880 *FYSNMGDHLKTLRVANTDKVNSLSFEGDGLRLVMGVGQTVYVANLKLDYKWSYLA*SET 1059
Query: 121 VVFAFTVPDKIEESVMFWNVHTNERRMKSVRGLQYLSAWKDACVLV 166
++FA+ D++E +++FW+ + ++ ++GL + D CVL+
Sbjct: 1060LIFAYQRQDRMEFTIIFWDTKRE*KSIRYMKGLLDIKGSNDCCVLI 1197
>emb|CR548612.1| Paramecium tetraurelia macronuclear largest chromosome, complete sequence
Length = 984602
Score = 108 bits (270), Expect = 6e-22, Method: Composition-based stats.
Identities = 56/166 (33%), Positives = 99/166 (59%), Gaps = 3/166 (1%)
Frame = +2
Query: 4 LAVCYQHGRIQLMASIGDEAPYVMDSDIPIQFVSWNPHGTVLAVSAVMPTATVDASLVVT 63
L + Y GR+ LM + DE+P ++D+ + I V W+P+G++ AV+ D V
Sbjct: 121556 LLIGYTCGRV*LMKNDKDESPILIDTVMAISSVRWSPNGSMFAVAG--SAKDKDEQRAVV 121729
Query: 64 QFFSNEGIHLRTLRVAGK-QCGGIAWEGGGLRVAIAVDASVYFANVRPEYKYCYF--KKT 120
F+SN G HL+TLRVA + +++EG GLR+ + V +VY AN++ +YK+ Y +T
Sbjct: 121730 *FYSNMGDHLKTLRVANTDKVNSLSFEGDGLRLVMGVGQTVYVANLKLDYKWSYLA*SET 121909
Query: 121 VVFAFTVPDKIEESVMFWNVHTNERRMKSVRGLQYLSAWKDACVLV 166
++FA+ D++E +++FW+ + ++ ++GL + D CVL+
Sbjct: 121910 LIFAYQRQDRMEFTIIFWDTKRE*KSIRYMKGLLDIKGSNDCCVLI 122047
>ref|XM_001458287.1| Paramecium tetraurelia hypothetical protein (GSPATT00003792001)
partial mRNA
Length = 3591
Score = 107 bits (268), Expect = 9e-22, Method: Composition-based stats.
Identities = 56/166 (33%), Positives = 100/166 (60%), Gaps = 3/166 (1%)
Frame = +1
Query: 4 LAVCYQHGRIQLMASIGDEAPYVMDSDIPIQFVSWNPHGTVLAVSAVMPTATVDASLVVT 63
L + Y GR+ LM + D++P ++D+ + I V W+P+G++ AV+ D S V
Sbjct: 706 LLIAYACGRV*LMKNDKDDSPILIDTVMTISSVRWSPNGSMFAVAG--SAKDKDESRAVV 879
Query: 64 QFFSNEGIHLRTLRVAGK-QCGGIAWEGGGLRVAIAVDASVYFANVRPEYKYCYF--KKT 120
F+SN G HL+TLRVA + +++EG GLR+ + V +VY AN++ +YK+ Y +T
Sbjct: 880 *FYSNMGDHLKTLRVANTDKVSSLSFEGDGLRLVMGVGQTVYVANLKLDYKWSYLA*SET 1059
Query: 121 VVFAFTVPDKIEESVMFWNVHTNERRMKSVRGLQYLSAWKDACVLV 166
++FA+ D++E +++FW+ + ++ ++GL + D CVL+
Sbjct: 1060LIFAYQR*DRMEFTIIFWDTKRE*KSIRYMKGLLDIKGSNDCCVLI 1197
>emb|AL935163.7| Zebrafish DNA sequence from clone CH211-206K20 in linkage group 13
Contains the gene for a novel protein similar to BEND3,
BEN domain containing 3 (BEND3), the 3' end of the pdss2
gene for prenyl (decaprenyl) diphosphate synthase, subunit
2, the gene for a novel protein similar to H.sapien WDR35,
WD repeat domain 35 (WDR35), the matn3b gene for matrilin
3b, the gene for a novel protein similar to H.sapiens
KCNS3, potassium voltage-gated channel, delayed-rectifier,
subfamily S, member 3 (KCNS3, zgc:194842), a novel gene
and a CpG island, complete sequence
Length = 158350
Score = 69.7 bits (169), Expect(2) = 2e-19, Method: Composition-based stats.
Identities = 27/42 (64%), Positives = 36/42 (85%)
Frame = -1
Query: 72 HLRTLRVAGKQCGGIAWEGGGLRVAIAVDASVYFANVRPEYK 113
HLRTL+V GKQ ++WEGGGLR+ +AVD+ +YFAN+RP+YK
Sbjct: 58597 HLRTLKVPGKQMTAVSWEGGGLRIGLAVDSYIYFANIRPDYK 58472
Score = 51.2 bits (121), Expect(2) = 2e-19, Method: Composition-based stats.
Identities = 22/50 (44%), Positives = 33/50 (66%)
Frame = -3
Query: 116 YFKKTVVFAFTVPDKIEESVMFWNVHTNERRMKSVRGLQYLSAWKDACVL 165
Y TVV+A+T PD++E SV+FW+ NER +K V+ L ++ D C+L
Sbjct: 58391 YCSNTVVYAYTRPDRLEYSVVFWDTKNNERFVKYVKSLMSITTCGDFCIL 58242
>ref|XM_001676768.1| Caenorhabditis briggsae hypothetical protein CBG14804 partial mRNA
Length = 3771
Score = 89.4 bits (220), Expect = 3e-16, Method: Composition-based stats.
Identities = 46/162 (28%), Positives = 89/162 (54%), Gaps = 1/162 (0%)
Frame = +1
Query: 6 VCYQHGRIQLMASIGDEAPYVMD-SDIPIQFVSWNPHGTVLAVSAVMPTATVDASLVVTQ 64
V Y G IQLM ++ D P V+ +++ I W+P+G +A+ D
Sbjct: 943 VAYARGMIQLMRNLADPEPIVVRLTNVRITGAKWSPNGAFIAICGSEADKD-DPRHSNIH 1119
Query: 65 FFSNEGIHLRTLRVAGKQCGGIAWEGGGLRVAIAVDASVYFANVRPEYKYCYFKKTVVFA 124
F S G + + + GI+WE GLR++IA D +++ ++RPE+K+ ++T+V+A
Sbjct: 1120 FLSAYGHKVGFFQHFETRITGISWESTGLRMSIAADGNLFIGHIRPEFKWGAMEETIVYA 1299
Query: 125 FTVPDKIEESVMFWNVHTNERRMKSVRGLQYLSAWKDACVLV 166
+ + + +MF++ +ER +K++ ++++ +KD CVL+
Sbjct: 1300 YQKEELYQYGIMFYDYAIDERTIKTLTYFEHMAFFKDHCVLI 1425
>ref|NM_076539.3| Caenorhabditis elegans IntraFlagellar Transport Associated family
member (ifta-1) (ifta-1) mRNA, complete cds
Length = 3600
Score = 83.6 bits (205), Expect = 2e-14, Method: Composition-based stats.
Identities = 45/164 (27%), Positives = 83/164 (50%), Gaps = 1/164 (0%)
Frame = +1
Query: 4 LAVCYQHGRIQLMASIGDEAPYVMD-SDIPIQFVSWNPHGTVLAVSAVMPTATVDASLVV 62
V Y G +QLM S+ D P V+ + I W+P+G LAV + + +
Sbjct: 772 FVVAYARGMMQLMRSLNDPEPVVVSIPNFKITGAKWSPNGAFLAVCG-NDSDKDEPTFSK 948
Query: 63 TQFFSNEGIHLRTLRVAGKQCGGIAWEGGGLRVAIAVDASVYFANVRPEYKYCYFKKTVV 122
F S G + + GI WE GLR+AIA ++ +RPE+K+ ++T+V
Sbjct: 949 IHFLSAYGHIVGYFQTNDSCITGICWESTGLRMAIAAAGTLLIGQIRPEFKWGSIEETIV 1128
Query: 123 FAFTVPDKIEESVMFWNVHTNERRMKSVRGLQYLSAWKDACVLV 166
+ + + + +MF++ T+E+ +K+V + ++ +++ CVL+
Sbjct: 1129YVYQKEELYQYGIMFYDYKTDEKTVKTVTHFENMAFYREHCVLI 1260
>ref|XM_233960.4| PREDICTED: Rattus norvegicus WD repeat domain 35 (predicted)
(Wdr35_predicted), mRNA
Length = 2736
Score = 75.5 bits (184), Expect = 6e-12, Method: Composition-based stats.
Identities = 44/162 (27%), Positives = 73/162 (45%)
Frame = +1
Query: 4 LAVCYQHGRIQLMASIGDEAPYVMDSDIPIQFVSWNPHGTVLAVSAVMPTATVDASLVVT 63
LA+C+ +GR Q+M D+ P ++D+ + + + WN G+VLAV+ T D + +
Sbjct: 646 LAICFDNGRCQIMRHENDQNPVLIDTGMYVVGIQWNHIGSVLAVAGSQKVVTQDKDVNIV 825
Query: 64 QFFSNEGIHLRTLRVAGKQCGGIAWEGGGLRVAIAVDASVYFANVRPEYKYCYFKKTVVF 123
QF++ G E+ YC TVV+
Sbjct: 826 QFYTPFG----------------------------------------EWGYC--SNTVVY 879
Query: 124 AFTVPDKIEESVMFWNVHTNERRMKSVRGLQYLSAWKDACVL 165
A+T PD+ E V+FW+ NE+ +K V+ L ++ D C+L
Sbjct: 880 AYTRPDRPEYCVVFWDTKNNEKYVKYVKSLISITTCGDFCIL 1005
>gb|AC182751.1| Gasterosteus aculeatus clone VMRC26-154K14, complete sequence
Length = 166500
Score = 73.2 bits (178), Expect = 3e-11, Method: Composition-based stats.
Identities = 29/45 (64%), Positives = 37/45 (82%)
Frame = -3
Query: 72 HLRTLRVAGKQCGGIAWEGGGLRVAIAVDASVYFANVRPEYKYCY 116
HLRTL+V GKQ G+ WEGGGLR+ +AVD+ +YFAN+RP+YK Y
Sbjct: 138202 HLRTLKVPGKQMTGVGWEGGGLRIGLAVDSYIYFANIRPDYKVTY 138068
Score = 42.7 bits (99), Expect = 0.040, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 31/50 (62%)
Frame = -3
Query: 116 YFKKTVVFAFTVPDKIEESVMFWNVHTNERRMKSVRGLQYLSAWKDACVL 165
Y TVV+A+T P++ E V+FW+ NE+ +K V+ L ++ D C+L
Sbjct: 137875 YCCSTVVYAYTKPERQEYCVVFWDTKNNEKFVKYVKSLMSITTSGDFCIL 137726
>gb|AC110376.4| Mus musculus chromosome 12 clone RP23-441E7, complete sequence
Length = 190516
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 26/42 (61%), Positives = 36/42 (85%)
Frame = +2
Query: 72 HLRTLRVAGKQCGGIAWEGGGLRVAIAVDASVYFANVRPEYK 113
HL TL+V GKQ ++WEGGGL++A+AVD+ +YFAN+RP+YK
Sbjct: 142649 HLGTLKVPGKQMCSLSWEGGGLKIALAVDSFIYFANIRPDYK 142774
Score = 43.9 bits (102), Expect = 0.017, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 35/58 (60%)
Frame = +1
Query: 108 VRPEYKYCYFKKTVVFAFTVPDKIEESVMFWNVHTNERRMKSVRGLQYLSAWKDACVL 165
+ P + YC TVV+A+T PD+ E V+FW+ +E+ +K V+ L ++ D C+L
Sbjct: 145264 LHP*WGYC--SNTVVYAYTRPDRPEYCVVFWDTKNSEKYVKYVKSLISITTCGDFCIL 145431
>gb|AC140051.10| Mus musculus chromosome 12, clone RP23-296J15, complete sequence
Length = 205123
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 26/42 (61%), Positives = 36/42 (85%)
Frame = +1
Query: 72 HLRTLRVAGKQCGGIAWEGGGLRVAIAVDASVYFANVRPEYK 113
HL TL+V GKQ ++WEGGGL++A+AVD+ +YFAN+RP+YK
Sbjct: 25069 HLGTLKVPGKQMCSLSWEGGGLKIALAVDSFIYFANIRPDYK 25194
Score = 43.9 bits (102), Expect = 0.017, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 35/58 (60%)
Frame = +3
Query: 108 VRPEYKYCYFKKTVVFAFTVPDKIEESVMFWNVHTNERRMKSVRGLQYLSAWKDACVL 165
+ P + YC TVV+A+T PD+ E V+FW+ +E+ +K V+ L ++ D C+L
Sbjct: 27684 LHP*WGYC--SNTVVYAYTRPDRPEYCVVFWDTKNSEKYVKYVKSLISITTCGDFCIL 27851
>gb|AC151592.2| Nematostella vectensis clone JGIAFIN-297A9, complete sequence
Length = 40989
Score = 65.5 bits (158), Expect = 6e-09, Method: Composition-based stats.
Identities = 27/42 (64%), Positives = 33/42 (78%)
Frame = +1
Query: 72 HLRTLRVAGKQCGGIAWEGGGLRVAIAVDASVYFANVRPEYK 113
HLRTL+V GKQ WEGG LR+A+AVD+ +YFAN+RP YK
Sbjct: 38293 HLRTLKVPGKQITAACWEGGSLRIALAVDSFIYFANIRPNYK 38418
Score = 38.9 bits (89), Expect = 0.51, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = +1
Query: 112 YKYCYFKKTVVFAFTVPDKIEESVMFWNVHTNE 144
+++ YF TVV+AF PD++E V+FW+ E
Sbjct: 38752 FQWGYFSNTVVYAFNKPDRVEHCVVFWDTKNGE 38850
>gb|AC079145.4| Homo sapiens BAC clone RP11-42N12 from 2, complete sequence
Length = 137870
Score = 65.1 bits (157), Expect = 7e-09, Method: Composition-based stats.
Identities = 25/42 (59%), Positives = 35/42 (83%)
Frame = +3
Query: 72 HLRTLRVAGKQCGGIAWEGGGLRVAIAVDASVYFANVRPEYK 113
HL TL+V GK+ ++WEGGGL++A+AVD+ +YFAN+RP YK
Sbjct: 81492 HLGTLKVPGKEISALSWEGGGLKIALAVDSFIYFANIRPNYK 81617
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 21/50 (42%), Positives = 32/50 (64%)
Frame = +2
Query: 116 YFKKTVVFAFTVPDKIEESVMFWNVHTNERRMKSVRGLQYLSAWKDACVL 165
Y TVV+A+T PD+ E V+FW+ NE+ +K V+GL ++ D C+L
Sbjct: 84194 YCSNTVVYAYTRPDRPEYCVVFWDTKNNEKYVKYVKGLISITTCGDFCIL 84343
>gb|AC198294.3| MACACA MULATTA BAC clone CH250-491I20 from chromosome 13, complete
sequence
Length = 158552
Score = 64.7 bits (156), Expect = 9e-09, Method: Composition-based stats.
Identities = 25/42 (59%), Positives = 35/42 (83%)
Frame = -3
Query: 72 HLRTLRVAGKQCGGIAWEGGGLRVAIAVDASVYFANVRPEYK 113
HL TL+V GK+ ++WEGGGL++A+AVD+ +YFAN+RP YK
Sbjct: 82095 HLGTLKVPGKEISALSWEGGGLKIALAVDSFIYFANIRPNYK 81970
Score = 49.3 bits (116), Expect = 4e-04, Method: Composition-based stats.
Identities = 21/50 (42%), Positives = 32/50 (64%)
Frame = -3
Query: 116 YFKKTVVFAFTVPDKIEESVMFWNVHTNERRMKSVRGLQYLSAWKDACVL 165
Y TVV+A+T PD+ E V+FW+ NE+ +K V+GL ++ D C+L
Sbjct: 79449 YCSNTVVYAYTRPDRPEHCVVFWDTKNNEKHVKYVKGLISITTCGDFCIL 79300
>ref|XM_001583222.1| Trichomonas vaginalis G3 WD repeat protein, putative (TVAG_094610)
partial mRNA
Length = 3330
Score = 64.7 bits (156), Expect = 9e-09, Method: Composition-based stats.
Identities = 39/155 (25%), Positives = 71/155 (45%)
Frame = +1
Query: 4 LAVCYQHGRIQLMASIGDEAPYVMDSDIPIQFVSWNPHGTVLAVSAVMPTATVDASLVVT 63
L + ++ G IQLM + D P+V+ ++ I +W G + V P V
Sbjct: 646 LLIAFKDGNIQLMRNESDTQPFVISMELEISTATWFKSGQNFVTAGVKPNGRA-----VA 810
Query: 64 QFFSNEGIHLRTLRVAGKQCGGIAWEGGGLRVAIAVDASVYFANVRPEYKYCYFKKTVVF 123
FF++ G ++R L + GK+ I+ + +AIA D A + P + Y + +
Sbjct: 811 IFFNSHGDNIRELELQGKEIHAISLDPTDTSLAIASDNHFCLAQIVPHIIWGYTNNVLCY 990
Query: 124 AFTVPDKIEESVMFWNVHTNERRMKSVRGLQYLSA 158
+ + + +F+N + E+R++ R L LSA
Sbjct: 991 CYLKGNDDISTAIFFNRKSEEKRVQQFRDLVTLSA 1095
>ref|XM_001581461.1| Trichomonas vaginalis G3 WD repeat protein, putative (TVAG_238970)
partial mRNA
Length = 3297
Score = 63.9 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 37/155 (23%), Positives = 72/155 (46%)
Frame = +1
Query: 4 LAVCYQHGRIQLMASIGDEAPYVMDSDIPIQFVSWNPHGTVLAVSAVMPTATVDASLVVT 63
L + ++ G+IQLM + D P+V+ ++ I +W +G + + P V
Sbjct: 613 LLIAFRDGQIQLMRNESDSQPFVITMELEISTATWFKNGQNFVAAGIKPNGRA-----VA 777
Query: 64 QFFSNEGIHLRTLRVAGKQCGGIAWEGGGLRVAIAVDASVYFANVRPEYKYCYFKKTVVF 123
FF+ G ++R L + GK+ I+ + +AIA D A + P + Y + +
Sbjct: 778 IFFNAHGDNIRELELQGKEIHAISLDPTDTSLAIASDHHFCLAQIVPSIIWAYSNNVLCY 957
Query: 124 AFTVPDKIEESVMFWNVHTNERRMKSVRGLQYLSA 158
++ + +F+N + ERR++ + + LSA
Sbjct: 958 CYSKNNDNMYHAIFFNRKSGERRIQQFKDVLTLSA 1062
>ref|NM_001044838.2| Danio rerio si:ch211-51e12.5 (si:ch211-51e12.5), mRNA
Length = 5092
Score = 43.9 bits (102), Expect = 0.015, Method: Composition-based stats.
Identities = 28/110 (25%), Positives = 52/110 (47%), Gaps = 5/110 (4%)
Frame = +1
Query: 4 LAVCYQHGRIQLMASIGDEAPYVMDSDIPIQFVSWNPHGTVLAVSAVMPTATVDASL--- 60
L VC+ G I LM++ D +P ++ + + V W+ G +LAV+ + T D +
Sbjct: 745 LTVCFTSGDISLMSNYDDLSPLLIRTGLKDVVVQWSSQGDLLAVAGMERLVTSDPTQATR 924
Query: 61 -VVTQFFSNEGIHLRTLRV-AGKQCGGIAWEGGGLRVAIAVDASVYFANV 108
+ +F++ G H+ +L A + + W RV +A ++Y V
Sbjct: 925 NAIVKFYNVRGEHIYSLETPAQRPISTLCWGHRDSRVFLACGPALYVLRV 1074
>ref|NM_001045095.1| Danio rerio si:ch211-222h17.4 (si:ch211-222h17.4), mRNA
Length = 5119
Score = 43.9 bits (102), Expect = 0.015, Method: Composition-based stats.
Identities = 28/110 (25%), Positives = 52/110 (47%), Gaps = 5/110 (4%)
Frame = +1
Query: 4 LAVCYQHGRIQLMASIGDEAPYVMDSDIPIQFVSWNPHGTVLAVSAVMPTATVDASL--- 60
L VC+ G I LM++ D +P ++ + + V W+ G +LAV+ + T D +
Sbjct: 745 LTVCFTSGDISLMSNYDDLSPLLIRTGLKDVVVQWSSQGDLLAVAGMERLVTSDPTQATR 924
Query: 61 -VVTQFFSNEGIHLRTLRV-AGKQCGGIAWEGGGLRVAIAVDASVYFANV 108
+ +F++ G H+ +L A + + W RV +A ++Y V
Sbjct: 925 NAIVKFYNVRGEHIYSLETPAQRPISTLCWGHRDSRVFLACGPALYVLRV 1074
>gb|AC108497.1| Caenorhabditis briggsae cosmid CB010P02, complete sequence
Length = 88191
Score = 41.2 bits (95), Expect = 0.11, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 23/29 (79%)
Frame = +3
Query: 85 GIAWEGGGLRVAIAVDASVYFANVRPEYK 113
GI+WE GLR++IA D +++ ++RPE+K
Sbjct: 73677 GISWESTGLRMSIAADGNLFIGHIRPEFK 73763
>ref|XM_686015.2| PREDICTED: Danio rerio similar to tubby like protein 4 (LOC562633),
mRNA
Length = 4821
Score = 38.9 bits (89), Expect = 0.56, Method: Composition-based stats.
Identities = 32/115 (27%), Positives = 58/115 (50%), Gaps = 5/115 (4%)
Frame = +1
Query: 4 LAVCYQHGRIQLMASIGDEAPYVMDSDIPIQFVSWNPHGTVLAVSAV----MPTATVDAS 59
L V + G I LM + D +P ++ S + V W G +LAV+ + +PT ++ +
Sbjct: 745 LTVSFISGDISLMNNYDDLSPNIIRSGLKDVEVQWCSQGDLLAVAGMERHGLPTDSLMRN 924
Query: 60 LVVTQFFSNEGIHLRTLRV-AGKQCGGIAWEGGGLRVAIAVDASVYFANVRPEYK 113
+V +F++ +G H+ TL A + I W R+ +A ++Y VR E++
Sbjct: 925 ALV-KFYNVQGEHIYTLETPAQRPITTICWGHRDSRLFLACGPALYV--VRVEHR 1080
>gb|U40410.1| Caenorhabditis elegans cosmid C54G7, complete sequence
Length = 40270
Score = 36.2 bits (82), Expect = 3.5, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = -2
Query: 85 GIAWEGGGLRVAIAVDASVYFANVRPEYK 113
GI WE GLR+AIA ++ +RPE+K
Sbjct: 31896 GICWESTGLRMAIAAAGTLLIGQIRPEFK 31810
>ref|XM_001707133.1| Giardia lamblia ATCC 50803 Tubby superfamily protein (GL50803_87817)
partial mRNA
Length = 4623
Score = 35.8 bits (81), Expect = 4.7, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 28/54 (51%)
Frame = +1
Query: 76 LRVAGKQCGGIAWEGGGLRVAIAVDASVYFANVRPEYKYCYFKKTVVFAFTVPD 129
LR+ + +W+ GLR+ +A ++Y A VRP Y + Y AFT+ +
Sbjct: 1087 LRLPERVATSSSWDSTGLRLVLAAGKNIYIATVRPSYNH-YLMNDGTMAFTMSN 1245
>ref|XM_001952806.1| PREDICTED: Acyrthosiphon pisum similar to Tubby, putative
(LOC100166379), mRNA
Length = 1743
Score = 35.4 bits (80), Expect = 5.8, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 56/121 (46%), Gaps = 6/121 (4%)
Frame = +1
Query: 4 LAVCYQHGRIQLMASIGDEAPYVMDSDIPIQFVSWNPHGTVLAVSAVMPTATVDASLVVT 63
LA+C ++G IQLM D AP ++ + + ++ W+ +L V+ P + A++V
Sbjct: 724 LALCCKNGTIQLMRRFDDPAPVLIRTGLCPIYMEWSNAKELLCVAGSRP-GRLYANVV-- 894
Query: 64 QFFSNEGIHLRTLRV--AGKQCGGIAWEGGGLRVAIAVDASVYF----ANVRPEYKYCYF 117
Q +S G + ++ + + + W R+ IA ++ A+V P Y C
Sbjct: 895 QIYSATGQLVYSINMPQSSALVTAVTWAHNDRRIFIATGPEIHVACVSASVVPLYVLCAL 1074
Query: 118 K 118
+
Sbjct: 1075R 1077
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.324 0.136 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 579645293
Number of extensions: 7909366
Number of successful extensions: 45030
Number of sequences better than 10: 8
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 45024
Number of HSP's successfully gapped: 10
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 15 (7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.0 bits)
S2: 78 (34.7 bits)
Query= gi|154332708|ref|NC_009300.1|:subseq(380675,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 8
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
ref|XM_001562102.1| Leishmania braziliensis MHOM/BR/75/M2904 hyp... 113 2e-23
emb|AM494945.1| Leishmania braziliensis chromosome 8 113 2e-23
ref|XM_001463406.1| Leishmania infantum JPCM5 hypothetical prote... 62 8e-08
emb|AM502226.1| Leishmania infantum chromosome 8 62 8e-08
ref|XM_001681096.1| Leishmania major hypothetical protein, conse... 55 1e-05
>ref|XM_001562102.1| Leishmania braziliensis MHOM/BR/75/M2904 hypothetical protein,
conserved (LbrM08_V2.0960) partial mRNA
Length = 3747
Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats.
Identities = 84/166 (50%), Positives = 84/166 (50%)
Frame = +2
Query: 1 WRRLPFATSTAEFSSWPXXXXXXXXXXXXXFPFNSFRGTHTAXXXXXXXXXXXXXWTRPX 60
WRRLPFATSTAEFSSWP FPFNSFRGTHTA WTRP
Sbjct: 647 WRRLPFATSTAEFSSWPASATRRRTSWTATFPFNSFRGTHTARCSLSPPSCRPPRWTRPL 826
Query: 61 XXXXXXXXXXXXYARFGWLVXXXXXXXXXXXXXXXXXXXXXXXXXRMCGXXXXXXXXXXX 120
YARFGWLV RMCG
Sbjct: 827 LSRSSSATRASTYARFGWLVSSAAASRGKAAASASPLPSTPPCTSRMCGPSTSTATSRRP 1006
Query: 121 XXXXXXCQTRSKRVSCFGMSTQTSGGURACVAYSTLARGRTPACWS 166
CQTRSKRVSCFGMSTQTSGG RACVAYSTLARGRTPACWS
Sbjct: 1007SSLPSRCQTRSKRVSCFGMSTQTSGG*RACVAYSTLARGRTPACWS 1144
>emb|AM494945.1| Leishmania braziliensis chromosome 8
Length = 470112
Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats.
Identities = 84/166 (50%), Positives = 84/166 (50%)
Frame = +2
Query: 1 WRRLPFATSTAEFSSWPXXXXXXXXXXXXXFPFNSFRGTHTAXXXXXXXXXXXXXWTRPX 60
WRRLPFATSTAEFSSWP FPFNSFRGTHTA WTRP
Sbjct: 380678 WRRLPFATSTAEFSSWPASATRRRTSWTATFPFNSFRGTHTARCSLSPPSCRPPRWTRPL 380857
Query: 61 XXXXXXXXXXXXYARFGWLVXXXXXXXXXXXXXXXXXXXXXXXXXRMCGXXXXXXXXXXX 120
YARFGWLV RMCG
Sbjct: 380858 LSRSSSATRASTYARFGWLVSSAAASRGKAAASASPLPSTPPCTSRMCGPSTSTATSRRP 381037
Query: 121 XXXXXXCQTRSKRVSCFGMSTQTSGGURACVAYSTLARGRTPACWS 166
CQTRSKRVSCFGMSTQTSGG RACVAYSTLARGRTPACWS
Sbjct: 381038 SSLPSRCQTRSKRVSCFGMSTQTSGG*RACVAYSTLARGRTPACWS 381175
>ref|XM_001463406.1| Leishmania infantum JPCM5 hypothetical protein, conserved
(LinJ08.1090) partial mRNA
Length = 3744
Score = 61.6 bits (148), Expect = 8e-08, Method: Composition-based stats.
Identities = 57/161 (35%), Positives = 60/161 (37%)
Frame = +2
Query: 6 FATSTAEFSSWPXXXXXXXXXXXXXFPFNSFRGTHTAXXXXXXXXXXXXXWTRPXXXXXX 65
F TS A S P FPF FRG A TRP
Sbjct: 662 FVTSPARCS**PASVTRRRASWTATFPFTLFRGILPARFSLRPRSRRPPRRTRPLLSRSS 841
Query: 66 XXXXXXXYARFGWLVXXXXXXXXXXXXXXXXXXXXXXXXXRMCGXXXXXXXXXXXXXXXX 125
AR GWLV RMCG
Sbjct: 842 SATRAFTCARCGWLVSSAAGSRGRVAACASPLPWTPPCTSRMCGPATSTATSRRRSSLPS 1021
Query: 126 XCQTRSKRVSCFGMSTQTSGGURACVAYSTLARGRTPACWS 166
CQT+S+R SCFGMSTQT+ G RACVA STLAR R PACWS
Sbjct: 1022RCQTKSRRASCFGMSTQTNAGRRACVACSTLARARMPACWS 1144
>emb|AM502226.1| Leishmania infantum chromosome 8
Length = 511966
Score = 61.6 bits (148), Expect = 8e-08, Method: Composition-based stats.
Identities = 57/161 (35%), Positives = 60/161 (37%)
Frame = +3
Query: 6 FATSTAEFSSWPXXXXXXXXXXXXXFPFNSFRGTHTAXXXXXXXXXXXXXWTRPXXXXXX 65
F TS A S P FPF FRG A TRP
Sbjct: 456984 FVTSPARCS**PASVTRRRASWTATFPFTLFRGILPARFSLRPRSRRPPRRTRPLLSRSS 457163
Query: 66 XXXXXXXYARFGWLVXXXXXXXXXXXXXXXXXXXXXXXXXRMCGXXXXXXXXXXXXXXXX 125
AR GWLV RMCG
Sbjct: 457164 SATRAFTCARCGWLVSSAAGSRGRVAACASPLPWTPPCTSRMCGPATSTATSRRRSSLPS 457343
Query: 126 XCQTRSKRVSCFGMSTQTSGGURACVAYSTLARGRTPACWS 166
CQT+S+R SCFGMSTQT+ G RACVA STLAR R PACWS
Sbjct: 457344 RCQTKSRRASCFGMSTQTNAGRRACVACSTLARARMPACWS 457466
>ref|XM_001681096.1| Leishmania major hypothetical protein, conserved (LmjF08.1190)
partial mRNA
Length = 3747
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 54/161 (33%), Positives = 57/161 (35%)
Frame = +2
Query: 6 FATSTAEFSSWPXXXXXXXXXXXXXFPFNSFRGTHTAXXXXXXXXXXXXXWTRPXXXXXX 65
F TS A S P FPF FRG A TRP
Sbjct: 662 FVTSPARCS**PASATRRRASWTATFPFTLFRGILPARFSLSPRSRRPPRRTRPLLSRSS 841
Query: 66 XXXXXXXYARFGWLVXXXXXXXXXXXXXXXXXXXXXXXXXRMCGXXXXXXXXXXXXXXXX 125
AR GWLV RMCG
Sbjct: 842 SATRAFTCARCGWLVSSAAGSRGRVAACASPSP*TPPCTLRMCGPATSTATSRRRSSSPV 1021
Query: 126 XCQTRSKRVSCFGMSTQTSGGURACVAYSTLARGRTPACWS 166
C+T+S+R SCFGMSTQTS G ACVA STL R PACWS
Sbjct: 1022RCRTKSRRASCFGMSTQTSAGRSACVACSTLTHARMPACWS 1144
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.327 0.132 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 324389434
Number of extensions: 2622566
Number of successful extensions: 15097
Number of sequences better than 10: 4
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 15091
Number of HSP's successfully gapped: 4
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 15 (7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.0 bits)
S2: 78 (34.7 bits)
Query= gi|154332708|ref|NC_009300.1|:subseq(408390,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 8:[revcomp]
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
ref|XM_001562029.1| Leishmania braziliensis MHOM/BR/75/M2904 hyp... 267 8e-70
emb|AM494945.1| Leishmania braziliensis chromosome 8 267 8e-70
ref|XM_001463322.1| Leishmania infantum JPCM5 hypothetical prote... 114 1e-23
emb|AM502226.1| Leishmania infantum chromosome 8 114 1e-23
ref|XM_001680994.1| Leishmania major hypothetical protein, unkno... 112 6e-23
>ref|XM_001562029.1| Leishmania braziliensis MHOM/BR/75/M2904 hypothetical protein,
unknown function (LbrM08_V2.0180) partial mRNA
Length = 1935
Score = 267 bits (683), Expect = 8e-70, Method: Composition-based stats.
Identities = 163/166 (98%), Positives = 163/166 (98%)
Frame = -1
Query: 1 LRALCSAHLDHAGULGKPQKILHVAVAGDHDLLQSRQRGEVUKAAQVDAREER*YAQCGG 60
LRALCSAHLDHAG LGKPQKILHVAVAGDHDLLQSRQRGEV KAAQVDAREER*YAQCGG
Sbjct: 1596 LRALCSAHLDHAG*LGKPQKILHVAVAGDHDLLQSRQRGEV*KAAQVDAREER*YAQCGG 1417
Query: 61 GLRHKWSQYMQSRYREVQLLEPAQARPEKGGKRKHCERRRRQVMNAQGPKUVLQPR*PGE 120
GLRHKWSQYMQSRYREVQLLEPAQARPEKGGKRKHCERRRRQVMNAQGPK VLQPR*PGE
Sbjct: 1416 GLRHKWSQYMQSRYREVQLLEPAQARPEKGGKRKHCERRRRQVMNAQGPK*VLQPR*PGE 1237
Query: 121 VAQKPAVLDCHGLQRGESVDKIKPDEVGAPLEQDGGEGTGGA*RVR 166
VAQKPAVLDCHGLQRGESVDKIKPDEVGAPLEQDGGEGTGGA*RVR
Sbjct: 1236 VAQKPAVLDCHGLQRGESVDKIKPDEVGAPLEQDGGEGTGGA*RVR 1099
>emb|AM494945.1| Leishmania braziliensis chromosome 8
Length = 470112
Score = 267 bits (683), Expect = 8e-70, Method: Composition-based stats.
Identities = 163/166 (98%), Positives = 163/166 (98%)
Frame = -1
Query: 1 LRALCSAHLDHAGULGKPQKILHVAVAGDHDLLQSRQRGEVUKAAQVDAREER*YAQCGG 60
LRALCSAHLDHAG LGKPQKILHVAVAGDHDLLQSRQRGEV KAAQVDAREER*YAQCGG
Sbjct: 61722 LRALCSAHLDHAG*LGKPQKILHVAVAGDHDLLQSRQRGEV*KAAQVDAREER*YAQCGG 61543
Query: 61 GLRHKWSQYMQSRYREVQLLEPAQARPEKGGKRKHCERRRRQVMNAQGPKUVLQPR*PGE 120
GLRHKWSQYMQSRYREVQLLEPAQARPEKGGKRKHCERRRRQVMNAQGPK VLQPR*PGE
Sbjct: 61542 GLRHKWSQYMQSRYREVQLLEPAQARPEKGGKRKHCERRRRQVMNAQGPK*VLQPR*PGE 61363
Query: 121 VAQKPAVLDCHGLQRGESVDKIKPDEVGAPLEQDGGEGTGGA*RVR 166
VAQKPAVLDCHGLQRGESVDKIKPDEVGAPLEQDGGEGTGGA*RVR
Sbjct: 61362 VAQKPAVLDCHGLQRGESVDKIKPDEVGAPLEQDGGEGTGGA*RVR 61225
>ref|XM_001463322.1| Leishmania infantum JPCM5 hypothetical protein, unknown function
(LinJ08.0180) partial mRNA
Length = 1935
Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats.
Identities = 89/165 (53%), Positives = 111/165 (67%)
Frame = -1
Query: 1 LRALCSAHLDHAGULGKPQKILHVAVAGDHDLLQSRQRGEVUKAAQVDAREER*YAQCGG 60
LRAL HLD+ +PQK+LHVAVAGDH LLQ QRG+V KAAQ AREER QCGG
Sbjct: 1596 LRALRCTHLDNTRRPRQPQKVLHVAVAGDHHLLQGGQRGKV*KAAQAHAREERQLTQCGG 1417
Query: 61 GLRHKWSQYMQSRYREVQLLEPAQARPEKGGKRKHCERRRRQVMNAQGPKUVLQPR*PGE 120
G+RHK Q +Q+RY E++LL+PAQ PE GG RK +RRRRQV+NAQ + QPR P E
Sbjct: 1416 GVRHKRPQCVQARYGEIELLKPAQTHPETGGGRKRGDRRRRQVVNAQVGQRTPQPRHPRE 1237
Query: 121 VAQKPAVLDCHGLQRGESVDKIKPDEVGAPLEQDGGEGTGGA*RV 165
+ QKPAVL + Q ++ ++P++ A +EQD E G RV
Sbjct: 1236 ITQKPAVLHGYRPQFRKATQAVEPNKTRASVEQDACELAGKTERV 1102
>emb|AM502226.1| Leishmania infantum chromosome 8
Length = 511966
Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats.
Identities = 89/165 (53%), Positives = 111/165 (67%)
Frame = -3
Query: 1 LRALCSAHLDHAGULGKPQKILHVAVAGDHDLLQSRQRGEVUKAAQVDAREER*YAQCGG 60
LRAL HLD+ +PQK+LHVAVAGDH LLQ QRG+V KAAQ AREER QCGG
Sbjct: 63422 LRALRCTHLDNTRRPRQPQKVLHVAVAGDHHLLQGGQRGKV*KAAQAHAREERQLTQCGG 63243
Query: 61 GLRHKWSQYMQSRYREVQLLEPAQARPEKGGKRKHCERRRRQVMNAQGPKUVLQPR*PGE 120
G+RHK Q +Q+RY E++LL+PAQ PE GG RK +RRRRQV+NAQ + QPR P E
Sbjct: 63242 GVRHKRPQCVQARYGEIELLKPAQTHPETGGGRKRGDRRRRQVVNAQVGQRTPQPRHPRE 63063
Query: 121 VAQKPAVLDCHGLQRGESVDKIKPDEVGAPLEQDGGEGTGGA*RV 165
+ QKPAVL + Q ++ ++P++ A +EQD E G RV
Sbjct: 63062 ITQKPAVLHGYRPQFRKATQAVEPNKTRASVEQDACELAGKTERV 62928
>ref|XM_001680994.1| Leishmania major hypothetical protein, unknown function (LmjF08.0170)
partial mRNA
Length = 1935
Score = 112 bits (279), Expect = 6e-23, Method: Composition-based stats.
Identities = 87/165 (52%), Positives = 110/165 (66%)
Frame = -1
Query: 1 LRALCSAHLDHAGULGKPQKILHVAVAGDHDLLQSRQRGEVUKAAQVDAREER*YAQCGG 60
LRAL HLD+ G +P K+LHV VAGDH LQ QRG+V K AQV AREER QCG
Sbjct: 1596 LRALRCTHLDNTGRPRQPHKVLHVVVAGDHHPLQGGQRGKVRKTAQVHAREERQLTQCGR 1417
Query: 61 GLRHKWSQYMQSRYREVQLLEPAQARPEKGGKRKHCERRRRQVMNAQGPKUVLQPR*PGE 120
G+RHK Q +Q+R+ E++LL+PAQ PE+ G RK +RRRQV+NAQ + QPR P E
Sbjct: 1416 GVRHKGPQCVQARHGEIELLKPAQTHPERRGGRKRGGQRRRQVVNAQVAQRAPQPRQPRE 1237
Query: 121 VAQKPAVLDCHGLQRGESVDKIKPDEVGAPLEQDGGEGTGGA*RV 165
V+QKPAVL + Q E+ ++PD+ AP+EQD E +G RV
Sbjct: 1236 VSQKPAVLHGYRPQLREAT*TVEPDKTRAPVEQDACELSGRTERV 1102
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.327 0.142 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 458846119
Number of extensions: 6244210
Number of successful extensions: 51294
Number of sequences better than 10: 5
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 51131
Number of HSP's successfully gapped: 7
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 15 (7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.0 bits)
S2: 78 (34.7 bits)
Query= gi|154332708|ref|NC_009300.1|:subseq(408390,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 8:[revcomp]
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
ref|XM_001562029.1| Leishmania braziliensis MHOM/BR/75/M2904 hyp... 239 2e-61
emb|AM494945.1| Leishmania braziliensis chromosome 8 238 6e-61
ref|XM_001463322.1| Leishmania infantum JPCM5 hypothetical prote... 181 6e-44
emb|AM502226.1| Leishmania infantum chromosome 8 181 6e-44
ref|XM_001680994.1| Leishmania major hypothetical protein, unkno... 174 1e-41
>ref|XM_001562029.1| Leishmania braziliensis MHOM/BR/75/M2904 hypothetical protein,
unknown function (LbrM08_V2.0180) partial mRNA
Length = 1935
Score = 239 bits (611), Expect = 2e-61, Method: Composition-based stats.
Identities = 153/166 (92%), Positives = 153/166 (92%)
Frame = -2
Query: 1 CVHCVARTSTMRGDLASHKKFCMWRLPVITTFSRAGNAGRSEKPLKLMHVKSVNTRSVAA 60
CVHCVARTSTMRGDLASHKKFCMWRLPVITTFSRAGNAGRSEKPLKLMHVKSVNTRSVAA
Sbjct: 1595 CVHCVARTSTMRGDLASHKKFCMWRLPVITTFSRAGNAGRSEKPLKLMHVKSVNTRSVAA 1416
Query: 61 ACDTNGRNTCRVGTERFSSSSPLRPVPRKEASANTVSXXXXXXXXXXXXSESFSRGSQER 120
ACDTNGRNTCRVGTERFSSSSPLRPVPRKEASANTVS SESFSRGSQER
Sbjct: 1415 ACDTNGRNTCRVGTERFSSSSPLRPVPRKEASANTVSDADDR**MHRDRSESFSRGSQER 1236
Query: 121 SRRSPQFLTVTDCSAGSPXIKSNPTKLGHPSSKTVVRARAERSESA 166
SRRSPQFLTVTDCSAGSP IKSNPTKLGHPSSKTVVRARAERSESA
Sbjct: 1235 SRRSPQFLTVTDCSAGSP*IKSNPTKLGHPSSKTVVRARAERSESA 1098
>emb|AM494945.1| Leishmania braziliensis chromosome 8
Length = 470112
Score = 238 bits (606), Expect = 6e-61, Method: Composition-based stats.
Identities = 153/166 (92%), Positives = 153/166 (92%)
Frame = -2
Query: 1 CVHCVARTSTMRGDLASHKKFCMWRLPVITTFSRAGNAGRSEKPLKLMHVKSVNTRSVAA 60
CVHCVARTSTMRGDLASHKKFCMWRLPVITTFSRAGNAGRSEKPLKLMHVKSVNTRSVAA
Sbjct: 61721 CVHCVARTSTMRGDLASHKKFCMWRLPVITTFSRAGNAGRSEKPLKLMHVKSVNTRSVAA 61542
Query: 61 ACDTNGRNTCRVGTERFSSSSPLRPVPRKEASANTVSXXXXXXXXXXXXSESFSRGSQER 120
ACDTNGRNTCRVGTERFSSSSPLRPVPRKEASANTVS SESFSRGSQER
Sbjct: 61541 ACDTNGRNTCRVGTERFSSSSPLRPVPRKEASANTVSDADDR**MHRDRSESFSRGSQER 61362
Query: 121 SRRSPQFLTVTDCSAGSPXIKSNPTKLGHPSSKTVVRARAERSESA 166
SRRSPQFLTVTDCSAGSP IKSNPTKLGHPSSKTVVRARAERSESA
Sbjct: 61361 SRRSPQFLTVTDCSAGSP*IKSNPTKLGHPSSKTVVRARAERSESA 61224
>ref|XM_001463322.1| Leishmania infantum JPCM5 hypothetical protein, unknown function
(LinJ08.0180) partial mRNA
Length = 1935
Score = 181 bits (460), Expect = 6e-44, Method: Composition-based stats.
Identities = 113/165 (68%), Positives = 128/165 (77%)
Frame = -2
Query: 1 CVHCVARTSTMRGDLASHKKFCMWRLPVITTFSRAGNAGRSEKPLKLMHVKSVNTRSVAA 60
C HCVARTST RGDL +HKKFCMW+LPVITTFS+AG+AGRSEKPLKLMHVKSVN+RSVA
Sbjct: 1595 CEHCVARTSTTRGDLDNHKKFCMWQLPVITTFSKAGSAGRSEKPLKLMHVKSVNSRSVAE 1416
Query: 61 ACDTNGRNTCRVGTERFSSSSPLRPVPRKEASANTVSXXXXXXXXXXXXSESFSRGSQER 120
C TN R+ CR+G ER SSSSPLRP+PR+EA AN V SE SRG+ ER
Sbjct: 1415 ECATNDRSACRLGMERLSSSSPLRPIPRQEADANAVIDAGDRW*MHR*DSEPLSRGTHER 1236
Query: 121 SRRSPQFLTVTDCSAGSPXIKSNPTKLGHPSSKTVVRARAERSES 165
SR+SPQF TVTD S+G P +SNPTKL HPSSK +V RA+RSES
Sbjct: 1235 SRKSPQFFTVTDRSSGKPHKQSNPTKLAHPSSKMLVSLRAKRSES 1101
>emb|AM502226.1| Leishmania infantum chromosome 8
Length = 511966
Score = 181 bits (460), Expect = 6e-44, Method: Composition-based stats.
Identities = 113/165 (68%), Positives = 128/165 (77%)
Frame = -1
Query: 1 CVHCVARTSTMRGDLASHKKFCMWRLPVITTFSRAGNAGRSEKPLKLMHVKSVNTRSVAA 60
C HCVARTST RGDL +HKKFCMW+LPVITTFS+AG+AGRSEKPLKLMHVKSVN+RSVA
Sbjct: 63421 CEHCVARTSTTRGDLDNHKKFCMWQLPVITTFSKAGSAGRSEKPLKLMHVKSVNSRSVAE 63242
Query: 61 ACDTNGRNTCRVGTERFSSSSPLRPVPRKEASANTVSXXXXXXXXXXXXSESFSRGSQER 120
C TN R+ CR+G ER SSSSPLRP+PR+EA AN V SE SRG+ ER
Sbjct: 63241 ECATNDRSACRLGMERLSSSSPLRPIPRQEADANAVIDAGDRW*MHR*DSEPLSRGTHER 63062
Query: 121 SRRSPQFLTVTDCSAGSPXIKSNPTKLGHPSSKTVVRARAERSES 165
SR+SPQF TVTD S+G P +SNPTKL HPSSK +V RA+RSES
Sbjct: 63061 SRKSPQFFTVTDRSSGKPHKQSNPTKLAHPSSKMLVSLRAKRSES 62927
>ref|XM_001680994.1| Leishmania major hypothetical protein, unknown function (LmjF08.0170)
partial mRNA
Length = 1935
Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats.
Identities = 113/165 (68%), Positives = 125/165 (75%)
Frame = -2
Query: 1 CVHCVARTSTMRGDLASHKKFCMWRLPVITTFSRAGNAGRSEKPLKLMHVKSVNTRSVAA 60
C HCVARTST RGDL SH KFCMW LPVITT S+AG+AGRSEKPLK MHVKSVN+RSVA
Sbjct: 1595 CEHCVARTSTTRGDLDSHTKFCMW*LPVITTLSKAGSAGRSEKPLKFMHVKSVNSRSVAE 1416
Query: 61 ACDTNGRNTCRVGTERFSSSSPLRPVPRKEASANTVSXXXXXXXXXXXXSESFSRGSQER 120
C T R+ CR+G ER SSSSPLRP+PR+EA AN V+ SE SRGS ER
Sbjct: 1415 ECATKDRSACRLGMERLSSSSPLRPIPREEADANVVANAGDRW*MHR*HSEPLSRGSHER 1236
Query: 121 SRRSPQFLTVTDCSAGSPXIKSNPTKLGHPSSKTVVRARAERSES 165
SR+SPQF TVTD S+G P +SNPTKL HPSSKT+V RAERSES
Sbjct: 1235 SRKSPQFFTVTDRSSGKPHKQSNPTKLAHPSSKTLVSFRAERSES 1101
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.318 0.126 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 504172753
Number of extensions: 6813364
Number of successful extensions: 41698
Number of sequences better than 10: 2
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 41679
Number of HSP's successfully gapped: 2
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 16 (7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 78 (34.7 bits)
Query= gi|154332708|ref|NC_009300.1|:subseq(408390,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 8:[revcomp]
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
ref|XM_001562029.1| Leishmania braziliensis MHOM/BR/75/M2904 hyp... 162 4e-38
emb|AM494945.1| Leishmania braziliensis chromosome 8 162 4e-38
ref|XM_001680994.1| Leishmania major hypothetical protein, unkno... 60 3e-07
ref|XM_001463322.1| Leishmania infantum JPCM5 hypothetical prote... 49 4e-04
emb|AM502226.1| Leishmania infantum chromosome 8 49 4e-04
ref|XM_850402.1| PREDICTED: Canis familiaris similar to USP6 N-t... 35 6.7
>ref|XM_001562029.1| Leishmania braziliensis MHOM/BR/75/M2904 hypothetical protein,
unknown function (LbrM08_V2.0180) partial mRNA
Length = 1935
Score = 162 bits (410), Expect = 4e-38, Method: Composition-based stats.
Identities = 136/166 (81%), Positives = 136/166 (81%)
Frame = -3
Query: 1 ACTVXRAPRPCGVTWQATKNSACGGCRUSRPSPEPATRGGLKSRSSUCTURALIRAVWRR 60
ACTV RAPRPCGVTWQATKNSACGGCR SRPSPEPATRGGLKSRSS CT RALIRAVWRR
Sbjct: 1594 ACTV*RAPRPCGVTWQATKNSACGGCR*SRPSPEPATRGGLKSRSS*CT*RALIRAVWRR 1415
Query: 61 LATQMVAIHAESVPRGSAPRARSGPSRERRQAQTLUATPTTGDECTGTEVSPXXXXXXXX 120
LATQMVAIHAESVPRGSAPRARSGPSRERRQAQTL ATPTTGDECTGTEVSP
Sbjct: 1414 LATQMVAIHAESVPRGSAPRARSGPSRERRQAQTL*ATPTTGDECTGTEVSPSAEVARRG 1235
Query: 121 XXXXXXXXXXXXXXXGVRRXNQTRRSWGTPRARRWUGHGRSVASPP 166
GVRR NQTRRSWGTPRARRW GHGRSVASPP
Sbjct: 1234 RAEARSS*LSRTAARGVRR*NQTRRSWGTPRARRW*GHGRSVASPP 1097
>emb|AM494945.1| Leishmania braziliensis chromosome 8
Length = 470112
Score = 162 bits (410), Expect = 4e-38, Method: Composition-based stats.
Identities = 136/166 (81%), Positives = 136/166 (81%)
Frame = -3
Query: 1 ACTVXRAPRPCGVTWQATKNSACGGCRUSRPSPEPATRGGLKSRSSUCTURALIRAVWRR 60
ACTV RAPRPCGVTWQATKNSACGGCR SRPSPEPATRGGLKSRSS CT RALIRAVWRR
Sbjct: 61720 ACTV*RAPRPCGVTWQATKNSACGGCR*SRPSPEPATRGGLKSRSS*CT*RALIRAVWRR 61541
Query: 61 LATQMVAIHAESVPRGSAPRARSGPSRERRQAQTLUATPTTGDECTGTEVSPXXXXXXXX 120
LATQMVAIHAESVPRGSAPRARSGPSRERRQAQTL ATPTTGDECTGTEVSP
Sbjct: 61540 LATQMVAIHAESVPRGSAPRARSGPSRERRQAQTL*ATPTTGDECTGTEVSPSAEVARRG 61361
Query: 121 XXXXXXXXXXXXXXXGVRRXNQTRRSWGTPRARRWUGHGRSVASPP 166
GVRR NQTRRSWGTPRARRW GHGRSVASPP
Sbjct: 61360 RAEARSS*LSRTAARGVRR*NQTRRSWGTPRARRW*GHGRSVASPP 61223
>ref|XM_001680994.1| Leishmania major hypothetical protein, unknown function (LmjF08.0170)
partial mRNA
Length = 1935
Score = 59.7 bits (143), Expect = 3e-07, Method: Composition-based stats.
Identities = 72/159 (45%), Positives = 87/159 (54%)
Frame = -3
Query: 7 APRPCGVTWQATKNSACGGCRUSRPSPEPATRGGLKSRSSUCTURALIRAVWRRLATQMV 66
APR G T AT++SACG CR S PSP A R G K+RSS CT RA AVW+R A Q
Sbjct: 1576 APRQHGATSTATQSSACGSCR*SPPSPRRAAREGPKNRSSSCT*RASTHAVWQRSAPQRT 1397
Query: 67 AIHAESVPRGSAPRARSGPSRERRQAQTLUATPTTGDECTGTEVSPXXXXXXXXXXXXXX 126
A+ A S R AP+ARS PSRE+R+ QT TP TG ECTG+ SP
Sbjct: 1396 AVRAGSAWRD*APQARSDPSREKRRTQTWWPTPATGGECTGSTASPSAAAATRGLAKARS 1217
Query: 127 XXXXXXXXXGVRRXNQTRRSWGTPRARRWUGHGRSVASP 165
G ++TR++ T RARR G++ ASP
Sbjct: 1216 SSRLPTAAPGSHINSRTRQNSRTRRARRL*AFGQNGASP 1100
>ref|XM_001463322.1| Leishmania infantum JPCM5 hypothetical protein, unknown function
(LinJ08.0180) partial mRNA
Length = 1935
Score = 49.3 bits (116), Expect = 4e-04, Method: Composition-based stats.
Identities = 62/106 (58%), Positives = 69/106 (65%)
Frame = -3
Query: 7 APRPCGVTWQATKNSACGGCRUSRPSPEPATRGGLKSRSSUCTURALIRAVWRRLATQMV 66
APR T TK+SACG CR S PSP A R GLKSRSS CT RA AVWRR A Q
Sbjct: 1576 APRQHEATSTTTKSSACGSCR*SPPSPRRAAREGLKSRSSSCT*RASTHAVWRRSAPQTT 1397
Query: 67 AIHAESVPRGSAPRARSGPSRERRQAQTLUATPTTGDECTGTEVSP 112
A+ A SV R AP+ARS PSR+RR+ QT +TP TG ECTG +P
Sbjct: 1396 AVRAGSVWRD*APQARSDPSRDRRRTQTR*STPATGGECTGRTANP 1259
>emb|AM502226.1| Leishmania infantum chromosome 8
Length = 511966
Score = 49.3 bits (116), Expect = 4e-04, Method: Composition-based stats.
Identities = 62/106 (58%), Positives = 69/106 (65%)
Frame = -2
Query: 7 APRPCGVTWQATKNSACGGCRUSRPSPEPATRGGLKSRSSUCTURALIRAVWRRLATQMV 66
APR T TK+SACG CR S PSP A R GLKSRSS CT RA AVWRR A Q
Sbjct: 63402 APRQHEATSTTTKSSACGSCR*SPPSPRRAAREGLKSRSSSCT*RASTHAVWRRSAPQTT 63223
Query: 67 AIHAESVPRGSAPRARSGPSRERRQAQTLUATPTTGDECTGTEVSP 112
A+ A SV R AP+ARS PSR+RR+ QT +TP TG ECTG +P
Sbjct: 63222 AVRAGSVWRD*APQARSDPSRDRRRTQTR*STPATGGECTGRTANP 63085
>ref|XM_850402.1| PREDICTED: Canis familiaris similar to USP6 N-terminal like
(LOC612668), mRNA
Length = 2259
Score = 35.4 bits (80), Expect = 6.7, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 27/50 (54%)
Frame = +1
Query: 7 APRPCGVTWQATKNSACGGCRUSRPSPEPATRGGLKSRSSUCTURALIRA 56
APRPC V+W ++ G C+ + P+PA RGGL+ C+ L A
Sbjct: 415 APRPCRVSWPSSPR---GTCQGPQSGPQPALRGGLQIWRVPCSLAQLTEA 555
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.325 0.133 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 568215598
Number of extensions: 8688518
Number of successful extensions: 126055
Number of sequences better than 10: 47
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 125658
Number of HSP's successfully gapped: 98
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 15 (7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.0 bits)
S2: 78 (34.7 bits)
Query= gi|154333023|ref|NC_009301.1|:subseq(313836,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 9
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
ref|XM_001562648.1| Leishmania braziliensis MHOM/BR/75/M2904 hyp... 164 1e-38
emb|AM494946.1| Leishmania braziliensis chromosome 9 164 1e-38
ref|XM_001463501.1| Leishmania infantum JPCM5 hypothetical prote... 85 6e-15
emb|AM502227.1| Leishmania infantum chromosome 9 85 6e-15
ref|XM_001681198.1| Leishmania major hypothetical protein, conse... 80 2e-13
>ref|XM_001562648.1| Leishmania braziliensis MHOM/BR/75/M2904 hypothetical protein,
conserved (LbrM09_V2.0840) partial mRNA
Length = 16320
Score = 164 bits (414), Expect = 1e-38, Method: Composition-based stats.
Identities = 99/166 (59%), Positives = 99/166 (59%)
Frame = -1
Query: 1 HVKQCCLVQVHLGHEGHVVLXXXXXXXXXXXXXXXXXDGTGKXXXXXXXGEAPHTCDGGV 60
HVKQCCLVQVHLGHEGHVVL DGTGK GEAPHTCDGGV
Sbjct: 8196 HVKQCCLVQVHLGHEGHVVLSASMSQRPRRSSSSPPRDGTGKLLQLLLLGEAPHTCDGGV 8017
Query: 61 GWLVSCCAPCXXXXXXXXXXXXXXXXXXXNGAAFDKXXXXXXXXXXXXXXXXXXXXXXYG 120
GWLVSCCAPC NGAAFDK YG
Sbjct: 8016 GWLVSCCAPCLLFVLVAVRRTRLARHLLANGAAFDKLLLVCCCCCRRRLPVVLLP*RRYG 7837
Query: 121 GUCLSGAGVRSGXLLRRMIQTVPTAHQPRPRLGVNSAEVGFHRALV 166
G CLSGAGVRSG LLRRMIQTVPTAHQPRPRLGVNSAEVGFHRALV
Sbjct: 7836 G*CLSGAGVRSG*LLRRMIQTVPTAHQPRPRLGVNSAEVGFHRALV 7699
>emb|AM494946.1| Leishmania braziliensis chromosome 9
Length = 556710
Score = 164 bits (414), Expect = 1e-38, Method: Composition-based stats.
Identities = 99/166 (59%), Positives = 99/166 (59%)
Frame = +1
Query: 1 HVKQCCLVQVHLGHEGHVVLXXXXXXXXXXXXXXXXXDGTGKXXXXXXXGEAPHTCDGGV 60
HVKQCCLVQVHLGHEGHVVL DGTGK GEAPHTCDGGV
Sbjct: 313837 HVKQCCLVQVHLGHEGHVVLSASMSQRPRRSSSSPPRDGTGKLLQLLLLGEAPHTCDGGV 314016
Query: 61 GWLVSCCAPCXXXXXXXXXXXXXXXXXXXNGAAFDKXXXXXXXXXXXXXXXXXXXXXXYG 120
GWLVSCCAPC NGAAFDK YG
Sbjct: 314017 GWLVSCCAPCLLFVLVAVRRTRLARHLLANGAAFDKLLLVCCCCCRRRLPVVLLP*RRYG 314196
Query: 121 GUCLSGAGVRSGXLLRRMIQTVPTAHQPRPRLGVNSAEVGFHRALV 166
G CLSGAGVRSG LLRRMIQTVPTAHQPRPRLGVNSAEVGFHRALV
Sbjct: 314197 G*CLSGAGVRSG*LLRRMIQTVPTAHQPRPRLGVNSAEVGFHRALV 314334
>ref|XM_001463501.1| Leishmania infantum JPCM5 hypothetical protein, conserved
(LinJ09.0810) partial mRNA
Length = 16383
Score = 85.1 bits (209), Expect = 6e-15, Method: Composition-based stats.
Identities = 69/174 (39%), Positives = 76/174 (43%), Gaps = 8/174 (4%)
Frame = -1
Query: 1 HVKQCCLVQVHLGHEGHVVLXXXXXXXXXXXXXXXXXDGTGKXXXXXXXGEAPHTCDGGV 60
HVK+CCLVQVHLGHEGHVVL +G GK GE PHT DGGV
Sbjct: 8280 HVKECCLVQVHLGHEGHVVLCVAVPQRPCRSSPSPPRNGAGKPLQMVLLGEVPHTRDGGV 8101
Query: 61 GWLVSCCAP----CXXXXXXXXXXXXXXXXXXXNGAAFDKXXXXXXXXXXXXXXXXXXXX 116
GWLV C P +GAA +
Sbjct: 8100 GWLVVCWMPRLLFVLEAALIAARRTRLARTLLGSGAAVGELPLACRRLPAVLLPR----- 7936
Query: 117 XXYGGUC----LSGAGVRSGXLLRRMIQTVPTAHQPRPRLGVNSAEVGFHRALV 166
G C LSGAGVR +LR Q VP A QPRPRL V++ EVG HRA V
Sbjct: 7935 ----GRCDRQ*LSGAGVRGDLVLRGTTQAVPIARQPRPRL*VHTVEVGLHRASV 7786
>emb|AM502227.1| Leishmania infantum chromosome 9
Length = 570592
Score = 85.1 bits (209), Expect = 6e-15, Method: Composition-based stats.
Identities = 69/174 (39%), Positives = 76/174 (43%), Gaps = 8/174 (4%)
Frame = +1
Query: 1 HVKQCCLVQVHLGHEGHVVLXXXXXXXXXXXXXXXXXDGTGKXXXXXXXGEAPHTCDGGV 60
HVK+CCLVQVHLGHEGHVVL +G GK GE PHT DGGV
Sbjct: 297673 HVKECCLVQVHLGHEGHVVLCVAVPQRPCRSSPSPPRNGAGKPLQMVLLGEVPHTRDGGV 297852
Query: 61 GWLVSCCAP----CXXXXXXXXXXXXXXXXXXXNGAAFDKXXXXXXXXXXXXXXXXXXXX 116
GWLV C P +GAA +
Sbjct: 297853 GWLVVCWMPRLLFVLEAALIAARRTRLARTLLGSGAAVGELPLACRRLPAVLLPR----- 298017
Query: 117 XXYGGUC----LSGAGVRSGXLLRRMIQTVPTAHQPRPRLGVNSAEVGFHRALV 166
G C LSGAGVR +LR Q VP A QPRPRL V++ EVG HRA V
Sbjct: 298018 ----GRCDRQ*LSGAGVRGDLVLRGTTQAVPIARQPRPRL*VHTVEVGLHRASV 298167
>ref|XM_001681198.1| Leishmania major hypothetical protein, conserved (LmjF09.0760)
partial mRNA
Length = 16446
Score = 80.1 bits (196), Expect = 2e-13, Method: Composition-based stats.
Identities = 67/174 (38%), Positives = 74/174 (42%), Gaps = 8/174 (4%)
Frame = -1
Query: 1 HVKQCCLVQVHLGHEGHVVLXXXXXXXXXXXXXXXXXDGTGKXXXXXXXGEAPHTCDGGV 60
HVK+CCLVQVHLGHEGHVVL +G GK GE PHT DGGV
Sbjct: 8337 HVKKCCLVQVHLGHEGHVVLCVAVPQRPRRTSPSPPRNGAGKPLQTVLLGEVPHTRDGGV 8158
Query: 61 GWLVSCCAP----CXXXXXXXXXXXXXXXXXXXNGAAFDKXXXXXXXXXXXXXXXXXXXX 116
GWL+ C +GAA +
Sbjct: 8157 GWLIVCWMSRLLFVLVAALIAAWRTRLACTLLGSGAAVGELPLACRRLPAVPLPR----- 7993
Query: 117 XXYGGUC----LSGAGVRSGXLLRRMIQTVPTAHQPRPRLGVNSAEVGFHRALV 166
G C LSGA VR +LR Q VP A QPRPRL V+S EVG HRA V
Sbjct: 7992 ----GGCDRQ*LSGASVRGNLVLRGTTQAVPIARQPRPRL*VHSFEVGLHRASV 7843
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.329 0.145 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 407484654
Number of extensions: 3543273
Number of successful extensions: 29398
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 29395
Number of HSP's successfully gapped: 0
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 15 (7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.0 bits)
S2: 78 (34.7 bits)
Query= gi|154333023|ref|NC_009301.1|:subseq(313836,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 9
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
ref|XM_001562648.1| Leishmania braziliensis MHOM/BR/75/M2904 hyp... 174 8e-42
emb|AM494946.1| Leishmania braziliensis chromosome 9 174 8e-42
ref|XM_001463501.1| Leishmania infantum JPCM5 hypothetical prote... 97 2e-18
emb|AM502227.1| Leishmania infantum chromosome 9 97 2e-18
ref|XM_001681198.1| Leishmania major hypothetical protein, conse... 86 4e-15
>ref|XM_001562648.1| Leishmania braziliensis MHOM/BR/75/M2904 hypothetical protein,
conserved (LbrM09_V2.0840) partial mRNA
Length = 16320
Score = 174 bits (441), Expect = 8e-42, Method: Composition-based stats.
Identities = 117/146 (80%), Positives = 117/146 (80%)
Frame = -2
Query: 1 MUSSAASYRCIWAMKGMLYUVXXXXXXXXXXXXXXXXMAQVSCFNFCCSAKLHTRVTVVX 60
M SSAASYRCIWAMKGMLY V MAQVSCFNFCCSAKLHTRVTVV
Sbjct: 8195 M*SSAASYRCIWAMKGMLY*VHRCRSVRAARRRRHHAMAQVSCFNFCCSAKLHTRVTVV* 8016
Query: 61 DGSSVAARLVSSSFSSPSGALDLLVTFLPTAPRLTSCFLFXXXXXXXXFRLSFFPEDATV 120
DGSSVAARLVSSSFSSPSGALDLLVTFLPTAPRLTSCFLF FRLSFFPEDATV
Sbjct: 8015 DGSSVAARLVSSSFSSPSGALDLLVTFLPTAPRLTSCFLFAAAAAAAAFRLSFFPEDATV 7836
Query: 121 GDVSLAPAFAAASCUGEUSRPYPLHI 146
GDVSLAPAFAAASC GE SRPYPLHI
Sbjct: 7835 GDVSLAPAFAAASC*GE*SRPYPLHI 7758
>emb|AM494946.1| Leishmania braziliensis chromosome 9
Length = 556710
Score = 174 bits (441), Expect = 8e-42, Method: Composition-based stats.
Identities = 117/146 (80%), Positives = 117/146 (80%)
Frame = +2
Query: 1 MUSSAASYRCIWAMKGMLYUVXXXXXXXXXXXXXXXXMAQVSCFNFCCSAKLHTRVTVVX 60
M SSAASYRCIWAMKGMLY V MAQVSCFNFCCSAKLHTRVTVV
Sbjct: 313838 M*SSAASYRCIWAMKGMLY*VHRCRSVRAARRRRHHAMAQVSCFNFCCSAKLHTRVTVV* 314017
Query: 61 DGSSVAARLVSSSFSSPSGALDLLVTFLPTAPRLTSCFLFXXXXXXXXFRLSFFPEDATV 120
DGSSVAARLVSSSFSSPSGALDLLVTFLPTAPRLTSCFLF FRLSFFPEDATV
Sbjct: 314018 DGSSVAARLVSSSFSSPSGALDLLVTFLPTAPRLTSCFLFAAAAAAAAFRLSFFPEDATV 314197
Query: 121 GDVSLAPAFAAASCUGEUSRPYPLHI 146
GDVSLAPAFAAASC GE SRPYPLHI
Sbjct: 314198 GDVSLAPAFAAASC*GE*SRPYPLHI 314275
>ref|XM_001463501.1| Leishmania infantum JPCM5 hypothetical protein, conserved
(LinJ09.0810) partial mRNA
Length = 16383
Score = 97.1 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 77/144 (53%), Positives = 80/144 (55%), Gaps = 4/144 (2%)
Frame = -2
Query: 4 SAASYRCIWAMKGMLYUVXXXXXXXXXXXXXXXXMAQVSCFNFCCSAKLHTRVTVVXDGS 63
SAASYRCIWAMKGMLY V AQVS F +CCSAK HTRVT V DGS
Sbjct: 8270 SAASYRCIWAMKGMLYCV*RCRSVRAARRRRHHATAQVSRFRWCCSAKFHTRVTAV*DGS 8091
Query: 64 SVAARL----VSSSFSSPSGALDLLVTFLPTAPRLTSCFLFXXXXXXXXFRLSFFPEDAT 119
S A L S S P GALDL FL APRL S L SFFP DA
Sbjct: 8090 SSAGCLDFSSSSRPPSLPPGALDLPAPFLAAAPRLASFLLLAAAFPP-----SFFPADAA 7926
Query: 120 VGDVSLAPAFAAASCUGEUSRPYP 143
+G+ SLAPAFAA C GE RPYP
Sbjct: 7925 IGNDSLAPAFAATWC*GELHRPYP 7854
>emb|AM502227.1| Leishmania infantum chromosome 9
Length = 570592
Score = 97.1 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 77/144 (53%), Positives = 80/144 (55%), Gaps = 4/144 (2%)
Frame = +2
Query: 4 SAASYRCIWAMKGMLYUVXXXXXXXXXXXXXXXXMAQVSCFNFCCSAKLHTRVTVVXDGS 63
SAASYRCIWAMKGMLY V AQVS F +CCSAK HTRVT V DGS
Sbjct: 297683 SAASYRCIWAMKGMLYCV*RCRSVRAARRRRHHATAQVSRFRWCCSAKFHTRVTAV*DGS 297862
Query: 64 SVAARL----VSSSFSSPSGALDLLVTFLPTAPRLTSCFLFXXXXXXXXFRLSFFPEDAT 119
S A L S S P GALDL FL APRL S L SFFP DA
Sbjct: 297863 SSAGCLDFSSSSRPPSLPPGALDLPAPFLAAAPRLASFLLLAAAFPP-----SFFPADAA 298027
Query: 120 VGDVSLAPAFAAASCUGEUSRPYP 143
+G+ SLAPAFAA C GE RPYP
Sbjct: 298028 IGNDSLAPAFAATWC*GELHRPYP 298099
>ref|XM_001681198.1| Leishmania major hypothetical protein, conserved (LmjF09.0760)
partial mRNA
Length = 16446
Score = 85.9 bits (211), Expect = 4e-15, Method: Composition-based stats.
Identities = 72/142 (50%), Positives = 75/142 (52%), Gaps = 4/142 (2%)
Frame = -2
Query: 4 SAASYRCIWAMKGMLYUVXXXXXXXXXXXXXXXXMAQVSCFNFCCSAKLHTRVTVVXDGS 63
SAASYRCIWAMKGMLY V AQVS F CCSAK HTRVTVV DGS
Sbjct: 8327 SAASYRCIWAMKGMLYCV*RCRSVRAARRRRHHATAQVSRFRLCCSAKFHTRVTVV*DGS 8148
Query: 64 SVAARL----VSSSFSSPSGALDLLVTFLPTAPRLTSCFLFXXXXXXXXFRLSFFPEDAT 119
S A L S S P GA DL FL APRL S L S F +A
Sbjct: 8147 SSAGCLDFSSSSWPPSLPRGAPDLPALFLAAAPRLASFLLLAAAFPP-----SLFLAEAA 7983
Query: 120 VGDVSLAPAFAAASCUGEUSRP 141
+G+ SLAPAFAA C GE RP
Sbjct: 7982 IGNDSLAPAFAATWC*GELHRP 7917
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.333 0.137 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 440711874
Number of extensions: 5776827
Number of successful extensions: 36434
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 36422
Number of HSP's successfully gapped: 0
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 15 (7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (19.6 bits)
S2: 78 (34.7 bits)
Query= gi|154333023|ref|NC_009301.1|:subseq(313836,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 9
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
ref|XM_001562648.1| Leishmania braziliensis MHOM/BR/75/M2904 hyp... 142 5e-32
emb|AM494946.1| Leishmania braziliensis chromosome 9 142 5e-32
ref|XM_001463501.1| Leishmania infantum JPCM5 hypothetical prote... 70 2e-10
emb|AM502227.1| Leishmania infantum chromosome 9 70 2e-10
ref|XM_001681198.1| Leishmania major hypothetical protein, conse... 65 6e-09
>ref|XM_001562648.1| Leishmania braziliensis MHOM/BR/75/M2904 hypothetical protein,
conserved (LbrM09_V2.0840) partial mRNA
Length = 16320
Score = 142 bits (357), Expect = 5e-32, Method: Composition-based stats.
Identities = 109/166 (65%), Positives = 109/166 (65%)
Frame = -3
Query: 1 CEAVLPRTGASGPURACCTECIDVAASAPLVVVXXXXXXXXXXXXXXXXXXXXHVURWCR 60
CEAVLPRTGASGP RACCTECIDVAASAPLVVV HV RWCR
Sbjct: 8194 CEAVLPRTGASGP*RACCTECIDVAASAPLVVVATTRWHR*AASTSAARRSSTHV*RWCR 8015
Query: 61 MARQXXXXXXXXXXXXXXXHSTCSSPSCQRRRVUQAAXXXXXXXXXXXXXXXXXXKTLRW 120
MARQ HSTCSSPSCQRRRV QAA KTLRW
Sbjct: 8014 MARQLLRALSPLRSRRRPAHSTCSSPSCQRRRV*QAASCLLLLLPPPPSGCPSSLKTLRW 7835
Query: 121 VMSLWRRRSQRLAAEENDPDRTHCTSATSASRSQQCGGRFPXSVGS 166
VMSLWRRRSQRLAAEENDPDRTHCTSATSASRSQQCGGRFP SVGS
Sbjct: 7834 VMSLWRRRSQRLAAEENDPDRTHCTSATSASRSQQCGGRFP*SVGS 7697
>emb|AM494946.1| Leishmania braziliensis chromosome 9
Length = 556710
Score = 142 bits (357), Expect = 5e-32, Method: Composition-based stats.
Identities = 109/166 (65%), Positives = 109/166 (65%)
Frame = +3
Query: 1 CEAVLPRTGASGPURACCTECIDVAASAPLVVVXXXXXXXXXXXXXXXXXXXXHVURWCR 60
CEAVLPRTGASGP RACCTECIDVAASAPLVVV HV RWCR
Sbjct: 313839 CEAVLPRTGASGP*RACCTECIDVAASAPLVVVATTRWHR*AASTSAARRSSTHV*RWCR 314018
Query: 61 MARQXXXXXXXXXXXXXXXHSTCSSPSCQRRRVUQAAXXXXXXXXXXXXXXXXXXKTLRW 120
MARQ HSTCSSPSCQRRRV QAA KTLRW
Sbjct: 314019 MARQLLRALSPLRSRRRPAHSTCSSPSCQRRRV*QAASCLLLLLPPPPSGCPSSLKTLRW 314198
Query: 121 VMSLWRRRSQRLAAEENDPDRTHCTSATSASRSQQCGGRFPXSVGS 166
VMSLWRRRSQRLAAEENDPDRTHCTSATSASRSQQCGGRFP SVGS
Sbjct: 314199 VMSLWRRRSQRLAAEENDPDRTHCTSATSASRSQQCGGRFP*SVGS 314336
>ref|XM_001463501.1| Leishmania infantum JPCM5 hypothetical protein, conserved
(LinJ09.0810) partial mRNA
Length = 16383
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 71/170 (41%), Positives = 77/170 (45%), Gaps = 4/170 (2%)
Frame = -3
Query: 1 CEAVLPRTGASGPURACCTECIDVAASAPLVVVXXXXXXXXXXXXXXXXXXXXHVURWCR 60
CE VLPRTGASGP RACCT C AAS PLV V H R CR
Sbjct: 8278 CEGVLPRTGASGP*RACCTVCSGAAASVPLVAVATTQRRR*AASDGAARRSSTHA*RRCR 8099
Query: 61 ----MARQXXXXXXXXXXXXXXXHSTCSSPSCQRRRVUQAAXXXXXXXXXXXXXXXXXXK 116
+ HSTC PS QRRR +A+ +
Sbjct: 8098 MARRLLDASTSLRPRGRPHCRPAHSTCPHPSWQRRRGWRASSCLPPPSRRPSSP-----R 7934
Query: 117 TLRWVMSLWRRRSQRLAAEENDPDRTHCTSATSASRSQQCGGRFPXSVGS 166
TLR M+LWRRRS+RL AE N RTH AT AS S C GR P SVGS
Sbjct: 7933 TLRSAMTLWRRRSRRLGAEGNYTGRTHRAPATPASLSPHCRGRPP*SVGS 7784
>emb|AM502227.1| Leishmania infantum chromosome 9
Length = 570592
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 71/170 (41%), Positives = 77/170 (45%), Gaps = 4/170 (2%)
Frame = +3
Query: 1 CEAVLPRTGASGPURACCTECIDVAASAPLVVVXXXXXXXXXXXXXXXXXXXXHVURWCR 60
CE VLPRTGASGP RACCT C AAS PLV V H R CR
Sbjct: 297675 CEGVLPRTGASGP*RACCTVCSGAAASVPLVAVATTQRRR*AASDGAARRSSTHA*RRCR 297854
Query: 61 ----MARQXXXXXXXXXXXXXXXHSTCSSPSCQRRRVUQAAXXXXXXXXXXXXXXXXXXK 116
+ HSTC PS QRRR +A+ +
Sbjct: 297855 MARRLLDASTSLRPRGRPHCRPAHSTCPHPSWQRRRGWRASSCLPPPSRRPSSP-----R 298019
Query: 117 TLRWVMSLWRRRSQRLAAEENDPDRTHCTSATSASRSQQCGGRFPXSVGS 166
TLR M+LWRRRS+RL AE N RTH AT AS S C GR P SVGS
Sbjct: 298020 TLRSAMTLWRRRSRRLGAEGNYTGRTHRAPATPASLSPHCRGRPP*SVGS 298169
>ref|XM_001681198.1| Leishmania major hypothetical protein, conserved (LmjF09.0760)
partial mRNA
Length = 16446
Score = 65.5 bits (158), Expect = 6e-09, Method: Composition-based stats.
Identities = 65/170 (38%), Positives = 73/170 (42%), Gaps = 4/170 (2%)
Frame = -3
Query: 1 CEAVLPRTGASGPURACCTECIDVAASAPLVVVXXXXXXXXXXXXXXXXXXXXHVURWCR 60
CE VLPRTGASGP RACCT C AASAP V V H RWCR
Sbjct: 8335 CEEVLPRTGASGP*RACCTVCSGAAASAPHVAVATTQRRR*AASDCAARRSSTHA*RWCR 8156
Query: 61 MARQ----XXXXXXXXXXXXXXXHSTCSSPSCQRRRVUQAAXXXXXXXXXXXXXXXXXXK 116
MA + H TC S QRRR +A+
Sbjct: 8155 MAHRLLDVSTSLRPRGRPHCRVAHPTCLHSSWQRRRGWRASSCLPPPSRRPSSSRRLRS- 7979
Query: 117 TLRWVMSLWRRRSQRLAAEENDPDRTHCTSATSASRSQQCGGRFPXSVGS 166
M+LWR+RS++L AE N R + AT AS S Q GR P SVGS
Sbjct: 7978 ----AMTLWRQRSRQLGAEGNYTGRANRAPATPASLSPQFRGRPP*SVGS 7841
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.327 0.130 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 444146966
Number of extensions: 4663800
Number of successful extensions: 33253
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 33228
Number of HSP's successfully gapped: 0
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 15 (7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.0 bits)
S2: 78 (34.7 bits)
Query= gi|154333023|ref|NC_009301.1|:subseq(342208,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 9:[revcomp]
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
emb|AM494946.1| Leishmania braziliensis chromosome 9 191 5e-47
gb|AC068985.17| Homo sapiens 3 BAC RP11-217E22 (Roswell Park Can... 39 0.79
>emb|AM494946.1| Leishmania braziliensis chromosome 9
Length = 556710
Score = 191 bits (486), Expect = 5e-47, Method: Composition-based stats.
Identities = 109/148 (73%), Positives = 109/148 (73%)
Frame = -2
Query: 19 SVRLAFSLRCVIHTYASPLPPPQASHRXQXEPXEVSSUUWCSRGXRGKTQRVGAYGREGL 78
SVRLAFSLRCVIHTYASPLPPPQASHR Q EP EVSS WCSRG RGKTQRVGAYGREGL
Sbjct: 214448 SVRLAFSLRCVIHTYASPLPPPQASHR*Q*EP*EVSS**WCSRG*RGKTQRVGAYGREGL 214269
Query: 79 SNATHKKRTAKRKENDTVSTEAHNLXXXXXXXXXXXXFDLLPLFPSCALVSCAHGRLVQN 138
SNATHKKRTAKRKENDTVSTEAHNL FDLLPLFPSCALVSCAHGRLVQN
Sbjct: 214268 SNATHKKRTAKRKENDTVSTEAHNLHRTERHTHTHTRFDLLPLFPSCALVSCAHGRLVQN 214089
Query: 139 FXXXXXXXXXXXXXXXXXXXXXLFVWDA 166
F LFVWDA
Sbjct: 214088 FSASARVPPSSPACSLFSSSSSLFVWDA 214005
>gb|AC068985.17| Homo sapiens 3 BAC RP11-217E22 (Roswell Park Cancer Institute Human BAC
Library) complete sequence
Length = 173106
Score = 38.5 bits (88), Expect = 0.79, Method: Composition-based stats.
Identities = 15/26 (57%), Positives = 19/26 (73%)
Frame = -3
Query: 20 VRLAFSLRCVIHTYASPLPPPQASHR 45
+ L+FS+RC+ Y SPLPPP SHR
Sbjct: 116263 INLSFSIRCIS*CYPSPLPPPHNSHR 116186
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.340 0.145 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 389812312
Number of extensions: 4428823
Number of successful extensions: 47986
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 47970
Number of HSP's successfully gapped: 0
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 15 (7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (19.6 bits)
S2: 78 (34.7 bits)
Query= gi|154333023|ref|NC_009301.1|:subseq(342208,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 9:[revcomp]
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
emb|AM494946.1| Leishmania braziliensis chromosome 9 154 7e-36
>emb|AM494946.1| Leishmania braziliensis chromosome 9
Length = 556710
Score = 154 bits (390), Expect = 7e-36, Method: Composition-based stats.
Identities = 83/117 (70%), Positives = 83/117 (70%)
Frame = -3
Query: 17 LVQUDWRSPUGVXXXXXXXXXXXXRHLIDNNKNHRKSAADDGVQEDREGKHKEWGLTGER 76
LVQ DWRSP GV RHLIDNNKNHRKSAADDGVQEDREGKHKEWGLTGER
Sbjct: 214453 LVQ*DWRSP*GVSYTHTPPPSPHPRHLIDNNKNHRKSAADDGVQEDREGKHKEWGLTGER 214274
Query: 77 DSVMXXXXXXXXXXXXXXXXXXXXIIYIEQSATHTHTPASIFSPFSPLVRLYRAHTD 133
DSVM IIYIEQSATHTHTPASIFSPFSPLVRLYRAHTD
Sbjct: 214273 DSVMQRTRREQPRERRTTRLAQRRIIYIEQSATHTHTPASIFSPFSPLVRLYRAHTD 214103
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.317 0.133 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 298503225
Number of extensions: 2609712
Number of successful extensions: 39374
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 39290
Number of HSP's successfully gapped: 0
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 16 (7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 78 (34.7 bits)
Query= gi|154333023|ref|NC_009301.1|:subseq(342208,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 9:[revcomp]
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
emb|AM494946.1| Leishmania braziliensis chromosome 9 229 2e-58
>emb|AM494946.1| Leishmania braziliensis chromosome 9
Length = 556710
Score = 229 bits (585), Expect = 2e-58, Method: Composition-based stats.
Identities = 126/150 (84%), Positives = 126/150 (84%)
Frame = -1
Query: 17 SFSEIGVLLEVCHTHXXXXXXXXXXXXXXXXXXXXXQQLMMVFKRIERENTKSGGLRERG 76
SFSEIGVLLEVCHTH QQLMMVFKRIERENTKSGGLRERG
Sbjct: 214452 SFSEIGVLLEVCHTHIRLPPPPTPGISSITIRTIGSQQLMMVFKRIERENTKSGGLRERG 214273
Query: 77 TQXCNAQEENSQEKGERHGXHRGAXFTSNRAPHTHTHPLRSSPPFPLLCACIVRTRTPRP 136
TQ CNAQEENSQEKGERHG HRGA FTSNRAPHTHTHPLRSSPPFPLLCACIVRTRTPRP
Sbjct: 214272 TQ*CNAQEENSQEKGERHG*HRGA*FTSNRAPHTHTHPLRSSPPFPLLCACIVRTRTPRP 214093
Query: 137 EFQRERARAPLLSRLQSVLFQFLSLCMGCH 166
EFQRERARAPLLSRLQSVLFQFLSLCMGCH
Sbjct: 214092 EFQRERARAPLLSRLQSVLFQFLSLCMGCH 214003
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.336 0.143 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 465092154
Number of extensions: 7507931
Number of successful extensions: 134843
Number of sequences better than 10: 2
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 134225
Number of HSP's successfully gapped: 3
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 15 (7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (19.6 bits)
S2: 78 (34.7 bits)
Query= gi|154333023|ref|NC_009301.1|:subseq(369576,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 9
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
emb|AM494946.1| Leishmania braziliensis chromosome 9 236 2e-60
ref|XM_001562666.1| Leishmania braziliensis MHOM/BR/75/M2904 elo... 83 3e-14
emb|AM502227.1| Leishmania infantum chromosome 9 82 5e-14
emb|AJ297857.1|LIN297857 Leishmania infantum mRNA for elongation... 82 5e-14
ref|XM_001463523.1| Leishmania infantum JPCM5 elongation factor-... 65 7e-09
ref|XM_001463522.1| Leishmania infantum JPCM5 elongation factor-... 65 7e-09
ref|XM_001681219.1| Leishmania major elongation factor-1 gamma (... 62 9e-08
gb|AY677169.1| Leishmania major elongation factor 1B gamma gene,... 62 9e-08
gb|AY545588.1| Crithidia fasciculata elongation factor 1B gamma ... 61 1e-07
ref|XM_824273.1| Trypanosoma brucei TREU927 elongation factor 1 ... 50 3e-04
ref|XM_824283.1| Trypanosoma brucei TREU927 elongation factor 1 ... 50 3e-04
ref|XM_805510.1| Trypanosoma cruzi strain CL Brener elongation f... 49 6e-04
ref|XM_801871.1| Trypanosoma cruzi strain CL Brener elongation f... 46 0.004
gb|L17307.1|TRBEF1GHOM Trypanosoma cruzi elongation factor 1-gam... 45 0.011
gb|AY545587.1| Crithidia fasciculata elongation factor 1B gamma ... 39 0.40
>emb|AM494946.1| Leishmania braziliensis chromosome 9
Length = 556710
Score = 236 bits (603), Expect = 2e-60, Method: Composition-based stats.
Identities = 148/166 (89%), Positives = 148/166 (89%)
Frame = +1
Query: 1 EGERPAYERSTQRSAEEKGAXKTNALTTLISGEGRGGWVXAKATRTSDQRRRASSPCARS 60
EGERPAYERSTQRSAEEKGA KTNALTTLISGEGRGGWV AKATRTSDQRRRASSPCARS
Sbjct: 369577 EGERPAYERSTQRSAEEKGA*KTNALTTLISGEGRGGWV*AKATRTSDQRRRASSPCARS 369756
Query: 61 QCTNSPLRQXGKEERAVKQPLRMMHANSEQRARGSSDRAVSHXGGLLEAAALQHWARYRR 120
QCTNSPLRQ GKEERAVKQPLRMMHANSEQRARGSSDRAVSH GGLLEAAALQHWARYRR
Sbjct: 369757 QCTNSPLRQ*GKEERAVKQPLRMMHANSEQRARGSSDRAVSH*GGLLEAAALQHWARYRR 369936
Query: 121 TLPAQVVRDXXXXXXXXXXXXXXEQLCVHHLIHDLRHALATEHPEA 166
TLPAQVVRD EQLCVHHLIHDLRHALATEHPEA
Sbjct: 369937 TLPAQVVRDLLLLCLNVLDLLPLEQLCVHHLIHDLRHALATEHPEA 370074
>ref|XM_001562666.1| Leishmania braziliensis MHOM/BR/75/M2904 elongation factor-1 gamma
(LbrM09_V2.1020) partial mRNA
Length = 1212
Score = 82.8 bits (203), Expect = 3e-14, Method: Composition-based stats.
Identities = 47/61 (77%), Positives = 47/61 (77%)
Frame = -1
Query: 106 LLEAAALQHWARYRRTLPAQVVRDXXXXXXXXXXXXXXEQLCVHHLIHDLRHALATEHPE 165
LLEAAALQHWARYRRTLPAQVVRD EQLCVHHLIHDLRHALATEHPE
Sbjct: 1212 LLEAAALQHWARYRRTLPAQVVRDLLLLCLNVLDLLPLEQLCVHHLIHDLRHALATEHPE 1033
Query: 166 A 166
A
Sbjct: 1032 A 1030
>emb|AM502227.1| Leishmania infantum chromosome 9
Length = 570592
Score = 82.4 bits (202), Expect = 5e-14, Method: Composition-based stats.
Identities = 56/94 (59%), Positives = 57/94 (60%)
Frame = +2
Query: 73 EERAVKQPLRMMHANSEQRARGSSDRAVSHXGGLLEAAALQHWARYRRTLPAQVVRDXXX 132
+ERAVK P RM H N Q A SSD GGLLEAA LQHWAR RR LPAQVVRD
Sbjct: 369686 KERAVKLPTRM-HLNILQFACSSSDPVFIQEGGLLEAATLQHWARDRRALPAQVVRDLFL 369862
Query: 133 XXXXXXXXXXXEQLCVHHLIHDLRHALATEHPEA 166
EQL VHH HDL HALA EHPEA
Sbjct: 369863 LRLHVLDLLPLEQLRVHHFAHDLWHALAAEHPEA 369964
Score = 66.2 bits (160), Expect = 3e-09, Method: Composition-based stats.
Identities = 40/63 (63%), Positives = 40/63 (63%)
Frame = +1
Query: 104 GGLLEAAALQHWARYRRTLPAQVVRDXXXXXXXXXXXXXXEQLCVHHLIHDLRHALATEH 163
GLLEAA LQHWAR RR LPAQVVRD EQL VHH HDL HALA EH
Sbjct: 372142 AGLLEAATLQHWARDRRALPAQVVRDLFLLRLHVLDLLPLEQLRVHHFAHDLWHALAAEH 372321
Query: 164 PEA 166
PEA
Sbjct: 372322 PEA 372330
>emb|AJ297857.1|LIN297857 Leishmania infantum mRNA for elongation factor-1 gamma (ef1g gene)
Length = 2395
Score = 82.4 bits (202), Expect = 5e-14, Method: Composition-based stats.
Identities = 56/94 (59%), Positives = 57/94 (60%)
Frame = -3
Query: 73 EERAVKQPLRMMHANSEQRARGSSDRAVSHXGGLLEAAALQHWARYRRTLPAQVVRDXXX 132
+ERAVK P RM H N Q A SSD GGLLEAA LQHWAR RR LPAQVVRD
Sbjct: 1469 KERAVKLPTRM-HLNILQFACSSSDPVFIQEGGLLEAATLQHWARDRRALPAQVVRDLFL 1293
Query: 133 XXXXXXXXXXXEQLCVHHLIHDLRHALATEHPEA 166
EQL VHH HDL HALA EHPEA
Sbjct: 1292 LRLHVLDLLPLEQLRVHHFAHDLWHALAAEHPEA 1191
>ref|XM_001463523.1| Leishmania infantum JPCM5 elongation factor-1 gamma (EF1G)
(LinJ09.1030) partial mRNA
Length = 1218
Score = 65.1 bits (157), Expect = 7e-09, Method: Composition-based stats.
Identities = 39/61 (63%), Positives = 39/61 (63%)
Frame = -1
Query: 106 LLEAAALQHWARYRRTLPAQVVRDXXXXXXXXXXXXXXEQLCVHHLIHDLRHALATEHPE 165
LLEAA LQHWAR RR LPAQVVRD EQL VHH HDL HALA EHPE
Sbjct: 1218 LLEAATLQHWARDRRALPAQVVRDLFLLRLHVLDLLPLEQLRVHHFAHDLWHALAAEHPE 1039
Query: 166 A 166
A
Sbjct: 1038 A 1036
>ref|XM_001463522.1| Leishmania infantum JPCM5 elongation factor-1 gamma (EF1G)
(LinJ09.1020) partial mRNA
Length = 1362
Score = 65.1 bits (157), Expect = 7e-09, Method: Composition-based stats.
Identities = 39/61 (63%), Positives = 39/61 (63%)
Frame = -1
Query: 106 LLEAAALQHWARYRRTLPAQVVRDXXXXXXXXXXXXXXEQLCVHHLIHDLRHALATEHPE 165
LLEAA LQHWAR RR LPAQVVRD EQL VHH HDL HALA EHPE
Sbjct: 1362 LLEAATLQHWARDRRALPAQVVRDLFLLRLHVLDLLPLEQLRVHHFAHDLWHALAAEHPE 1183
Query: 166 A 166
A
Sbjct: 1182 A 1180
>ref|XM_001681219.1| Leishmania major elongation factor-1 gamma (LmjF09.0970) mRNA,
complete cds
Length = 1215
Score = 61.6 bits (148), Expect = 9e-08, Method: Composition-based stats.
Identities = 39/61 (63%), Positives = 39/61 (63%)
Frame = -1
Query: 106 LLEAAALQHWARYRRTLPAQVVRDXXXXXXXXXXXXXXEQLCVHHLIHDLRHALATEHPE 165
LLEAAALQH AR RR LPA VVRD EQL VHH HDLRHALA EHPE
Sbjct: 1215 LLEAAALQHRARDRRALPA*VVRDLFLRRLHVLDLLPLEQLRVHHFAHDLRHALAAEHPE 1036
Query: 166 A 166
A
Sbjct: 1035 A 1033
>gb|AY677169.1| Leishmania major elongation factor 1B gamma gene, complete cds
Length = 1215
Score = 61.6 bits (148), Expect = 9e-08, Method: Composition-based stats.
Identities = 39/61 (63%), Positives = 39/61 (63%)
Frame = -1
Query: 106 LLEAAALQHWARYRRTLPAQVVRDXXXXXXXXXXXXXXEQLCVHHLIHDLRHALATEHPE 165
LLEAAALQH AR RR LPA VVRD EQL VHH HDLRHALA EHPE
Sbjct: 1215 LLEAAALQHRARDRRALPA*VVRDLFLRRLHVLDLLPLEQLRVHHFAHDLRHALAAEHPE 1036
Query: 166 A 166
A
Sbjct: 1035 A 1033
>gb|AY545588.1| Crithidia fasciculata elongation factor 1B gamma 2 gene, complete cds
Length = 1263
Score = 60.8 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 40/63 (63%), Positives = 40/63 (63%)
Frame = -1
Query: 104 GGLLEAAALQHWARYRRTLPAQVVRDXXXXXXXXXXXXXXEQLCVHHLIHDLRHALATEH 163
G LLEAAALQH R RR LPAQVVRD EQL VHHL HDLRHALA EH
Sbjct: 1230 GRLLEAAALQHRQRDRRALPAQVVRDLVLRRLHVRDLLPVEQLRVHHLAHDLRHALAAEH 1051
Query: 164 PEA 166
P A
Sbjct: 1050 PHA 1042
>ref|XM_824273.1| Trypanosoma brucei TREU927 elongation factor 1 gamma (Tb11.01.4660)
partial mRNA
Length = 1215
Score = 49.7 bits (117), Expect = 3e-04, Method: Composition-based stats.
Identities = 27/60 (45%), Positives = 34/60 (56%)
Frame = -1
Query: 106 LLEAAALQHWARYRRTLPAQVVRDXXXXXXXXXXXXXXEQLCVHHLIHDLRHALATEHPE 165
L + AAL++ R RTLPAQVVR+ +QL V H+ HDLRH L EHP+
Sbjct: 1215 LFKDAALKNGFRNGRTLPAQVVRNSFPLGAHVGDLFPVKQLRVFHIFHDLRHTLTPEHPQ 1036
>ref|XM_824283.1| Trypanosoma brucei TREU927 elongation factor 1 gamma (Tb11.01.4750)
partial mRNA
Length = 1599
Score = 49.7 bits (117), Expect = 3e-04, Method: Composition-based stats.
Identities = 27/60 (45%), Positives = 34/60 (56%)
Frame = -1
Query: 106 LLEAAALQHWARYRRTLPAQVVRDXXXXXXXXXXXXXXEQLCVHHLIHDLRHALATEHPE 165
L + AAL++ R RTLPAQVVR+ +QL V H+ HDLRH L EHP+
Sbjct: 1599 LFKDAALKNGFRNGRTLPAQVVRNSFPLGAHVGDLFPVKQLRVFHIFHDLRHTLTPEHPQ 1420
>ref|XM_805510.1| Trypanosoma cruzi strain CL Brener elongation factor 1-gamma
(EF-1-gamma) partial mRNA
Length = 624
Score = 48.5 bits (114), Expect = 6e-04, Method: Composition-based stats.
Identities = 29/59 (49%), Positives = 33/59 (55%)
Frame = -3
Query: 107 LEAAALQHWARYRRTLPAQVVRDXXXXXXXXXXXXXXEQLCVHHLIHDLRHALATEHPE 165
LE LQH R RR LPAQVVRD EQL V H++H+ RHA A EHP+
Sbjct: 604 LEHTPLQHRPRDRRALPAQVVRDALPLRRDVGDLLPVEQLRVLHVLHNRRHAPAAEHPQ 428
>ref|XM_801871.1| Trypanosoma cruzi strain CL Brener elongation factor 1-gamma
(EF-1-gamma) partial mRNA
Length = 1236
Score = 45.8 bits (107), Expect = 0.004, Method: Composition-based stats.
Identities = 29/59 (49%), Positives = 33/59 (55%)
Frame = -1
Query: 107 LEAAALQHWARYRRTLPAQVVRDXXXXXXXXXXXXXXEQLCVHHLIHDLRHALATEHPE 165
LE LQH R RR LPAQVVRD EQL V H++H+ RHA A EHP+
Sbjct: 1233 LEHTPLQHRPRDRRALPAQVVRDALPLRRDVSDLLPVEQLRVLHVLHNRRHAPAAEHPQ 1057
>gb|L17307.1|TRBEF1GHOM Trypanosoma cruzi elongation factor 1-gamma (mammalian homologue)
mRNA, complete cds
Length = 1380
Score = 44.7 bits (104), Expect = 0.011, Method: Composition-based stats.
Identities = 28/59 (47%), Positives = 32/59 (54%)
Frame = -1
Query: 107 LEAAALQHWARYRRTLPAQVVRDXXXXXXXXXXXXXXEQLCVHHLIHDLRHALATEHPE 165
LE LQH R RR LP QVVRD EQL V H++H+ RHA A EHP+
Sbjct: 1257 LEHTPLQHRPRDRRALPRQVVRDALPLRRDVSDLLPVEQLRVLHVLHNRRHAPAAEHPQ 1081
>gb|AY545587.1| Crithidia fasciculata elongation factor 1B gamma 1 mRNA, partial cds
Length = 1317
Score = 39.3 bits (90), Expect = 0.40, Method: Composition-based stats.
Identities = 23/45 (51%), Positives = 26/45 (57%)
Frame = -3
Query: 122 LPAQVVRDXXXXXXXXXXXXXXEQLCVHHLIHDLRHALATEHPEA 166
P++VVRD +QL VHHL HDLRHALA EHP A
Sbjct: 1315 FPSEVVRDLVLRRLHVGDLLPVKQLRVHHLAHDLRHALAAEHPHA 1181
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.330 0.135 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 451320536
Number of extensions: 5518031
Number of successful extensions: 71203
Number of sequences better than 10: 3
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 71160
Number of HSP's successfully gapped: 3
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 15 (7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.0 bits)
S2: 78 (34.7 bits)
Query= gi|154333023|ref|NC_009301.1|:subseq(369576,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 9
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
emb|AM494946.1| Leishmania braziliensis chromosome 9 181 1e-43
emb|AM502227.1| Leishmania infantum chromosome 9 88 9e-16
emb|AJ297857.1|LIN297857 Leishmania infantum mRNA for elongation... 88 9e-16
ref|XM_001562666.1| Leishmania braziliensis MHOM/BR/75/M2904 elo... 76 3e-12
ref|XM_001463523.1| Leishmania infantum JPCM5 elongation factor-... 72 6e-11
ref|XM_001463522.1| Leishmania infantum JPCM5 elongation factor-... 72 6e-11
ref|XM_001681219.1| Leishmania major elongation factor-1 gamma (... 71 1e-10
gb|AY677169.1| Leishmania major elongation factor 1B gamma gene,... 71 1e-10
gb|AY545588.1| Crithidia fasciculata elongation factor 1B gamma ... 64 2e-08
ref|XM_824273.1| Trypanosoma brucei TREU927 elongation factor 1 ... 51 1e-04
ref|XM_824283.1| Trypanosoma brucei TREU927 elongation factor 1 ... 51 1e-04
ref|XM_801871.1| Trypanosoma cruzi strain CL Brener elongation f... 44 0.016
gb|L17307.1|TRBEF1GHOM Trypanosoma cruzi elongation factor 1-gam... 43 0.038
ref|XM_805510.1| Trypanosoma cruzi strain CL Brener elongation f... 41 0.14
dbj|AB017765.2| Trypanosoma cruzi genes for GATase-CPSase, DHOas... 39 0.40
dbj|AB010288.1| Trypanosoma cruzi gene for elongation factor 1 g... 37 1.6
>emb|AM494946.1| Leishmania braziliensis chromosome 9
Length = 556710
Score = 181 bits (458), Expect = 1e-43, Method: Composition-based stats.
Identities = 112/161 (69%), Positives = 112/161 (69%)
Frame = +2
Query: 6 HTNDQHSDPXXXXXXXXXXXXLHULVERGVAGGCKPKPHAQXXXXXXXXXXXXXXXXLTL 65
HTNDQHSDP LH LVERGVAGGCKPKPHAQ LTL
Sbjct: 369593 HTNDQHSDPQKKRERKKQMR*LH*LVERGVAGGCKPKPHAQATRGAVHHRHAHAHSALTL 369772
Query: 66 RYVNKGRRREQUSSLCAUCTPTQSSVHGAAATVPLAIKAAYLKQRPSSTGRGIVGPSQHR 125
RYVNKGRRREQ SSLCA CTPTQSSVHGAAATVPLAIKAAYLKQRPSSTGRGIVGPSQHR
Sbjct: 369773 RYVNKGRRREQ*SSLCA*CTPTQSSVHGAAATVPLAIKAAYLKQRPSSTGRGIVGPSQHR 369952
Query: 126 XSVIFSFSAUTFLIXXXXXXXXXXXXXXXXGMPLPRNTQKP 166
SVIFSFSA TFLI GMPLPRNTQKP
Sbjct: 369953 *SVIFSFSA*TFLISSHSNSSVSTTSFTISGMPLPRNTQKP 370075
>emb|AM502227.1| Leishmania infantum chromosome 9
Length = 570592
Score = 87.8 bits (216), Expect = 9e-16, Method: Composition-based stats.
Identities = 52/82 (63%), Positives = 55/82 (67%)
Frame = +3
Query: 84 CTPTQSSVHGAAATVPLAIKAAYLKQRPSSTGRGIVGPSQHRXSVIFSFSAUTFLIXXXX 143
CT T S+H AAAT+ + K AYLKQRPSSTGRGIVGPSQHR SVIFSFSA T LI
Sbjct: 369717 CTSTYCSLHVAAATLYSSKKVAYLKQRPSSTGRGIVGPSQHR*SVIFSFSACTSLISSHS 369896
Query: 144 XXXXXXXXXXXXGMPLPRNTQK 165
GMPLPRNTQK
Sbjct: 369897 NNSVSTTSLTISGMPLPRNTQK 369962
Score = 72.8 bits (177), Expect = 4e-11, Method: Composition-based stats.
Identities = 42/63 (66%), Positives = 43/63 (68%)
Frame = +2
Query: 103 KAAYLKQRPSSTGRGIVGPSQHRXSVIFSFSAUTFLIXXXXXXXXXXXXXXXXGMPLPRN 162
+ AYLKQRPSSTGRGIVGPSQHR SVIFSFSA T LI GMPLPRN
Sbjct: 372140 RPAYLKQRPSSTGRGIVGPSQHR*SVIFSFSACTSLISSHSNNSVSTTSLTISGMPLPRN 372319
Query: 163 TQK 165
TQK
Sbjct: 372320 TQK 372328
>emb|AJ297857.1|LIN297857 Leishmania infantum mRNA for elongation factor-1 gamma (ef1g gene)
Length = 2395
Score = 87.8 bits (216), Expect = 9e-16, Method: Composition-based stats.
Identities = 52/82 (63%), Positives = 55/82 (67%)
Frame = -1
Query: 84 CTPTQSSVHGAAATVPLAIKAAYLKQRPSSTGRGIVGPSQHRXSVIFSFSAUTFLIXXXX 143
CT T S+H AAAT+ + K AYLKQRPSSTGRGIVGPSQHR SVIFSFSA T LI
Sbjct: 1438 CTSTYCSLHVAAATLYSSKKVAYLKQRPSSTGRGIVGPSQHR*SVIFSFSACTSLISSHS 1259
Query: 144 XXXXXXXXXXXXGMPLPRNTQK 165
GMPLPRNTQK
Sbjct: 1258 NNSVSTTSLTISGMPLPRNTQK 1193
>ref|XM_001562666.1| Leishmania braziliensis MHOM/BR/75/M2904 elongation factor-1 gamma
(LbrM09_V2.1020) partial mRNA
Length = 1212
Score = 76.3 bits (186), Expect = 3e-12, Method: Composition-based stats.
Identities = 43/61 (70%), Positives = 43/61 (70%)
Frame = -2
Query: 106 YLKQRPSSTGRGIVGPSQHRXSVIFSFSAUTFLIXXXXXXXXXXXXXXXXGMPLPRNTQK 165
YLKQRPSSTGRGIVGPSQHR SVIFSFSA TFLI GMPLPRNTQK
Sbjct: 1211 YLKQRPSSTGRGIVGPSQHR*SVIFSFSA*TFLISSHSNSSVSTTSFTISGMPLPRNTQK 1032
Query: 166 P 166
P
Sbjct: 1031 P 1029
>ref|XM_001463523.1| Leishmania infantum JPCM5 elongation factor-1 gamma (EF1G)
(LinJ09.1030) partial mRNA
Length = 1218
Score = 72.0 bits (175), Expect = 6e-11, Method: Composition-based stats.
Identities = 41/60 (68%), Positives = 41/60 (68%)
Frame = -2
Query: 106 YLKQRPSSTGRGIVGPSQHRXSVIFSFSAUTFLIXXXXXXXXXXXXXXXXGMPLPRNTQK 165
YLKQRPSSTGRGIVGPSQHR SVIFSFSA T LI GMPLPRNTQK
Sbjct: 1217 YLKQRPSSTGRGIVGPSQHR*SVIFSFSACTSLISSHSNNSVSTTSLTISGMPLPRNTQK 1038
>ref|XM_001463522.1| Leishmania infantum JPCM5 elongation factor-1 gamma (EF1G)
(LinJ09.1020) partial mRNA
Length = 1362
Score = 72.0 bits (175), Expect = 6e-11, Method: Composition-based stats.
Identities = 41/60 (68%), Positives = 41/60 (68%)
Frame = -2
Query: 106 YLKQRPSSTGRGIVGPSQHRXSVIFSFSAUTFLIXXXXXXXXXXXXXXXXGMPLPRNTQK 165
YLKQRPSSTGRGIVGPSQHR SVIFSFSA T LI GMPLPRNTQK
Sbjct: 1361 YLKQRPSSTGRGIVGPSQHR*SVIFSFSACTSLISSHSNNSVSTTSLTISGMPLPRNTQK 1182
>ref|XM_001681219.1| Leishmania major elongation factor-1 gamma (LmjF09.0970) mRNA,
complete cds
Length = 1215
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 40/60 (66%), Positives = 41/60 (68%)
Frame = -2
Query: 106 YLKQRPSSTGRGIVGPSQHRXSVIFSFSAUTFLIXXXXXXXXXXXXXXXXGMPLPRNTQK 165
YLKQRPSSTGRGIVGPSQHR SVIFSF+A T LI GMPLPRNTQK
Sbjct: 1214 YLKQRPSSTGRGIVGPSQHR*SVIFSFAACTSLISSHSNNSVSTTSLTISGMPLPRNTQK 1035
>gb|AY677169.1| Leishmania major elongation factor 1B gamma gene, complete cds
Length = 1215
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 40/60 (66%), Positives = 41/60 (68%)
Frame = -2
Query: 106 YLKQRPSSTGRGIVGPSQHRXSVIFSFSAUTFLIXXXXXXXXXXXXXXXXGMPLPRNTQK 165
YLKQRPSSTGRGIVGPSQHR SVIFSF+A T LI GMPLPRNTQK
Sbjct: 1214 YLKQRPSSTGRGIVGPSQHR*SVIFSFAACTSLISSHSNNSVSTTSLTISGMPLPRNTQK 1035
>gb|AY545588.1| Crithidia fasciculata elongation factor 1B gamma 2 gene, complete cds
Length = 1263
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 37/62 (59%), Positives = 38/62 (61%)
Frame = -2
Query: 105 AYLKQRPSSTGRGIVGPSQHRXSVIFSFSAUTFLIXXXXXXXXXXXXXXXXGMPLPRNTQ 164
AYLKQRPSSTG GIVGPSQHR SVI SF+A T I GMPLPRNT
Sbjct: 1226 AYLKQRPSSTGSGIVGPSQHR*SVILSFAACTSAISSQSNSSVSTTSLTISGMPLPRNTH 1047
Query: 165 KP 166
P
Sbjct: 1046 MP 1041
>ref|XM_824273.1| Trypanosoma brucei TREU927 elongation factor 1 gamma (Tb11.01.4660)
partial mRNA
Length = 1215
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 30/59 (50%), Positives = 32/59 (54%)
Frame = -2
Query: 106 YLKQRPSSTGRGIVGPSQHRXSVIFSFSAUTFLIXXXXXXXXXXXXXXXXGMPLPRNTQ 164
YLK RPS TG G+VGPSQHR SVI S A T I G+PLPRNT
Sbjct: 1214 YLKTRPSRTGFGMVGPSQHR*SVIRSLWALTSGISSQSNNSVSSTSFTISGIPLPRNTH 1038
>ref|XM_824283.1| Trypanosoma brucei TREU927 elongation factor 1 gamma (Tb11.01.4750)
partial mRNA
Length = 1599
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 30/59 (50%), Positives = 32/59 (54%)
Frame = -2
Query: 106 YLKQRPSSTGRGIVGPSQHRXSVIFSFSAUTFLIXXXXXXXXXXXXXXXXGMPLPRNTQ 164
YLK RPS TG G+VGPSQHR SVI S A T I G+PLPRNT
Sbjct: 1598 YLKTRPSRTGFGMVGPSQHR*SVIRSLWALTSGISSQSNNSVSSTSFTISGIPLPRNTH 1422
>ref|XM_801871.1| Trypanosoma cruzi strain CL Brener elongation factor 1-gamma
(EF-1-gamma) partial mRNA
Length = 1236
Score = 43.9 bits (102), Expect = 0.016, Method: Composition-based stats.
Identities = 28/59 (47%), Positives = 30/59 (50%)
Frame = -2
Query: 106 YLKQRPSSTGRGIVGPSQHRXSVIFSFSAUTFLIXXXXXXXXXXXXXXXXGMPLPRNTQ 164
+L RPSSTG GIVGPSQHR SV+ S A T GMP PRNT
Sbjct: 1235 HLNTRPSSTGLGIVGPSQHR*SVMRSRCAATSATSSQSNSSVSSTSSTIAGMPRPRNTH 1059
>gb|L17307.1|TRBEF1GHOM Trypanosoma cruzi elongation factor 1-gamma (mammalian homologue)
mRNA, complete cds
Length = 1380
Score = 42.7 bits (99), Expect = 0.038, Method: Composition-based stats.
Identities = 27/62 (43%), Positives = 30/62 (48%)
Frame = -2
Query: 103 KAAYLKQRPSSTGRGIVGPSQHRXSVIFSFSAUTFLIXXXXXXXXXXXXXXXXGMPLPRN 162
+ A+L RPSSTG GIVGPS R SV+ S A T GMP PRN
Sbjct: 1268 RHAHLNTRPSSTGLGIVGPSHDR*SVMRSRCAATSATSSQSNSSVSSTSSTIAGMPRPRN 1089
Query: 163 TQ 164
T
Sbjct: 1088 TH 1083
>ref|XM_805510.1| Trypanosoma cruzi strain CL Brener elongation factor 1-gamma
(EF-1-gamma) partial mRNA
Length = 624
Score = 40.8 bits (94), Expect = 0.14, Method: Composition-based stats.
Identities = 28/62 (45%), Positives = 31/62 (50%)
Frame = -1
Query: 103 KAAYLKQRPSSTGRGIVGPSQHRXSVIFSFSAUTFLIXXXXXXXXXXXXXXXXGMPLPRN 162
+ A+L RPSSTG GI GPSQHR SV+ S A T GMP PRN
Sbjct: 615 RHAHLNTRPSSTGLGIAGPSQHR*SVMRSRCAATSATSSQSNSSVSSTSSTIAGMPRPRN 436
Query: 163 TQ 164
T
Sbjct: 435 TH 430
>dbj|AB017765.2| Trypanosoma cruzi genes for GATase-CPSase, DHOase, OMPDCase-OPRTase,
surface protein, ACTase and DHODase, complete cds
Length = 25339
Score = 39.3 bits (90), Expect = 0.40, Method: Composition-based stats.
Identities = 28/66 (42%), Positives = 32/66 (48%)
Frame = -2
Query: 99 PLAIKAAYLKQRPSSTGRGIVGPSQHRXSVIFSFSAUTFLIXXXXXXXXXXXXXXXXGMP 158
P + A+ RPSSTG IVGPSQHR SV+ S A T+ GMP
Sbjct: 11979 PSQARHAHFNTRPSSTGLEIVGPSQHR*SVMRSRFAATY--ATSSLSPAAPCPPTIAGMP 11806
Query: 159 LPRNTQ 164
PRNT
Sbjct: 11805 RPRNTH 11788
>dbj|AB010288.1| Trypanosoma cruzi gene for elongation factor 1 gamma, partial cds
Length = 510
Score = 37.4 bits (85), Expect = 1.6, Method: Composition-based stats.
Identities = 26/59 (44%), Positives = 29/59 (49%)
Frame = -2
Query: 106 YLKQRPSSTGRGIVGPSQHRXSVIFSFSAUTFLIXXXXXXXXXXXXXXXXGMPLPRNTQ 164
+ RPSSTG IVGPSQHR SV+ S A T+ GMP PRNT
Sbjct: 509 HFNTRPSSTGLEIVGPSQHR*SVMRSRFAATY--ATSSLSPAAPCPPTIAGMPRPRNTH 339
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.323 0.135 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 399917402
Number of extensions: 4792641
Number of successful extensions: 19848
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 19848
Number of HSP's successfully gapped: 0
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 16 (7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 78 (34.7 bits)
Query= gi|154333023|ref|NC_009301.1|:subseq(369576,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 9
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
emb|AM494946.1| Leishmania braziliensis chromosome 9 188 4e-46
ref|XM_001562666.1| Leishmania braziliensis MHOM/BR/75/M2904 elo... 49 6e-04
>emb|AM494946.1| Leishmania braziliensis chromosome 9
Length = 556710
Score = 188 bits (478), Expect = 4e-46, Method: Composition-based stats.
Identities = 127/166 (76%), Positives = 127/166 (76%)
Frame = +3
Query: 1 GRETGIRTINTAIRRRKGSVKNKCVNYTDXWRGAWRVGVSQSHTHKRPEAPCIIAMRTLT 60
GRETGIRTINTAIRRRKGSVKNKCVNYTD WRGAWRVGVSQSHTHKRPEAPCIIAMRTLT
Sbjct: 369579 GRETGIRTINTAIRRRKGSVKNKCVNYTD*WRGAWRVGVSQSHTHKRPEAPCIIAMRTLT 369758
Query: 61 VHXLSVTSIREGGESSEAASAHDARQLRAACTGXXXXXXXXXXXXTUSSGPPALGAVXXX 120
VH LSVTSIREGGESSEAASAHDARQLRAACTG T SSGPPALGAV
Sbjct: 369759 VH*LSVTSIREGGESSEAASAHDARQLRAACTGQQRPCR*PLRRLT*SSGPPALGAVSSD 369938
Query: 121 XXXXXXXXXXXXXXXXXXXXXTRTALCPPPHSRSPACPCHGTPRSP 166
TRTALCPPPHSRSPACPCHGTPRSP
Sbjct: 369939 PPSTGSP*SSPSLPERS*SPPTRTALCPPPHSRSPACPCHGTPRSP 370076
>ref|XM_001562666.1| Leishmania braziliensis MHOM/BR/75/M2904 elongation factor-1 gamma
(LbrM09_V2.1020) partial mRNA
Length = 1212
Score = 48.9 bits (115), Expect = 6e-04, Method: Composition-based stats.
Identities = 35/59 (59%), Positives = 35/59 (59%)
Frame = -3
Query: 108 SSGPPALGAVXXXXXXXXXXXXXXXXXXXXXXXXTRTALCPPPHSRSPACPCHGTPRSP 166
SSGPPALGAV TRTALCPPPHSRSPACPCHGTPRSP
Sbjct: 1204 SSGPPALGAVSSDPPSTGSP*SSPSLPERS*SPPTRTALCPPPHSRSPACPCHGTPRSP 1028
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.325 0.134 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 560331515
Number of extensions: 7869111
Number of successful extensions: 101253
Number of sequences better than 10: 1
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 101136
Number of HSP's successfully gapped: 1
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 15 (7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.0 bits)
S2: 78 (34.7 bits)
Query= gi|154333023|ref|NC_009301.1|:subseq(421455,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 9
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
emb|AM494946.1| Leishmania braziliensis chromosome 9 232 4e-59
ref|XM_001562677.1| Leishmania braziliensis MHOM/BR/75/M2904 euk... 231 9e-59
emb|AM502227.1| Leishmania infantum chromosome 9 132 5e-29
ref|XM_001463533.1| Leishmania infantum JPCM5 eukaryotic transla... 128 5e-28
ref|XM_001681229.1| Leishmania major eukaryotic translation init... 123 2e-26
ref|XM_816660.1| Trypanosoma cruzi strain CL Brener eukaryotic t... 64 2e-08
ref|XM_799069.1| Trypanosoma cruzi strain CL Brener eukaryotic t... 63 3e-08
ref|XM_824289.1| Trypanosoma brucei TREU927 eukaryotic translati... 58 1e-06
gb|AC166553.2| Nectria haematococca clone JGIAYWI-9O2, complete ... 49 6e-04
ref|XM_001681230.1| Leishmania major translation initiation fact... 42 0.071
gb|CP000586.1| Ostreococcus lucimarinus CCE9901 chromosome 6, co... 40 0.36
ref|XM_001418515.1| Ostreococcus lucimarinus CCE9901 predicted p... 39 0.46
ref|XM_001979984.1| Drosophila erecta eukaryotic translation ini... 39 0.60
ref|XM_001707652.1| Giardia lamblia ATCC 50803 Translation initi... 39 0.76
ref|XM_001562678.1| Leishmania braziliensis MHOM/BR/75/M2904 tra... 37 2.1
>emb|AM494946.1| Leishmania braziliensis chromosome 9
Length = 556710
Score = 232 bits (591), Expect = 4e-59, Method: Composition-based stats.
Identities = 143/166 (86%), Positives = 143/166 (86%)
Frame = +1
Query: 1 VLSRXGRIERRADGDESTRDGVLXHVILRLESNRACLQRTVGEAAALFVGAPUAHQARTD 60
VLSR GRIERRADGDESTRDGVL HVILRLESNRACLQRTVGEAAALFVGAP AHQARTD
Sbjct: 421456 VLSR*GRIERRADGDESTRDGVL*HVILRLESNRACLQRTVGEAAALFVGAP*AHQARTD 421635
Query: 61 LHHLPHFDDTLRDSATSHAAFKALNVALTRLVDVKGXXXXXXXXXXXXXXXXXXVEEILX 120
LHHLPHFDDTLRDSATSHAAFKALNVALTRLVDVKG VEEIL
Sbjct: 421636 LHHLPHFDDTLRDSATSHAAFKALNVALTRLVDVKGAHDRHAHRRL*LAHRHRDVEEIL* 421815
Query: 121 XIIHVALQLRRNRHDRHIQRDVVQVGADLAVLIVRLYLAHKVNLVL 166
IIHVALQLRRNRHDRHIQRDVVQVGADLAVLIVRLYLAHKVNLVL
Sbjct: 421816 *IIHVALQLRRNRHDRHIQRDVVQVGADLAVLIVRLYLAHKVNLVL 421953
Score = 37.0 bits (84), Expect = 2.1, Method: Composition-based stats.
Identities = 35/110 (31%), Positives = 49/110 (44%), Gaps = 20/110 (18%)
Frame = +3
Query: 1 VLSRXGRIERRADGDESTRDGVLXHVILRLESN--------------RAC-----LQRTV 41
VL R GR++ A+G+E+ G L V+LRLES+ R C L R
Sbjct: 427146 VLPR*GRVKGGANGNEAAWHGELQLVLLRLESHNGGAQWDSVQLTRRRGCDVGGLLTRQD 427325
Query: 42 GEAAALFVGAPUAH-QARTDLHHLPHFDDTLRDSATSHAAFKALNVALTR 90
++ AP H Q+R + +P DT RDSA A + V +R
Sbjct: 427326 IRSSWQHTVAPSKHQQSRDNFDFVPDAQDTRRDSAADDATLERHRVVASR 427475
>ref|XM_001562677.1| Leishmania braziliensis MHOM/BR/75/M2904 eukaryotic translation
initiation factor 2 subunit, putative (LbrM09_V2.1130)
partial mRNA
Length = 1440
Score = 231 bits (588), Expect = 9e-59, Method: Composition-based stats.
Identities = 143/166 (86%), Positives = 143/166 (86%)
Frame = -1
Query: 1 VLSRXGRIERRADGDESTRDGVLXHVILRLESNRACLQRTVGEAAALFVGAPUAHQARTD 60
VLSR GRIERRADGDESTRDGVL HVILRLESNRACLQRTVGEAAALFVGAP AHQARTD
Sbjct: 1074 VLSR*GRIERRADGDESTRDGVL*HVILRLESNRACLQRTVGEAAALFVGAP*AHQARTD 895
Query: 61 LHHLPHFDDTLRDSATSHAAFKALNVALTRLVDVKGXXXXXXXXXXXXXXXXXXVEEILX 120
LHHLPHFDDTLRDSATSHAAFKALNVALTRLVDVKG VEEIL
Sbjct: 894 LHHLPHFDDTLRDSATSHAAFKALNVALTRLVDVKGAHDRHAHRRL*LAHRHRDVEEIL* 715
Query: 121 XIIHVALQLRRNRHDRHIQRDVVQVGADLAVLIVRLYLAHKVNLVL 166
IIHVALQLRRNRHDRHIQRDVVQVGADLAVLIVRLYLAHKVNLVL
Sbjct: 714 *IIHVALQLRRNRHDRHIQRDVVQVGADLAVLIVRLYLAHKVNLVL 577
>emb|AM502227.1| Leishmania infantum chromosome 9
Length = 570592
Score = 132 bits (331), Expect = 5e-29, Method: Composition-based stats.
Identities = 100/166 (60%), Positives = 121/166 (72%)
Frame = +3
Query: 1 VLSRXGRIERRADGDESTRDGVLXHVILRLESNRACLQRTVGEAAALFVGAPUAHQARTD 60
VL+R GR+E RADGDE+ R+GVL +VILRLE NRA QR +GEAAAL VGA AHQARTD
Sbjct: 428604 VLTRQGRVEGRADGDEAARNGVLQYVILRLERNRARFQRAIGEAAALLVGAA*AHQARTD 428783
Query: 61 LHHLPHFDDTLRDSATSHAAFKALNVALTRLVDVKGXXXXXXXXXXXXXXXXXXVEEILX 120
LHHL H DD LRD TSHA +ALNVAL LV+V+ VEE+L
Sbjct: 428784 LHHLSHLDDALRDCPTSHATLQALNVALAWLVNVERTHDCHAHRRLQLAHRHRDVEEVL* 428963
Query: 121 XIIHVALQLRRNRHDRHIQRDVVQVGADLAVLIVRLYLAHKVNLVL 166
++HVALQLRR+RH+RHIQ DVV+VGA++AVL+V L+L K++LVL
Sbjct: 428964 EVVHVALQLRRDRHNRHIQGDVVEVGANMAVLVVCLHLTDKIDLVL 429101
>ref|XM_001463533.1| Leishmania infantum JPCM5 eukaryotic translation initiation factor 2
subunit, putative (LinJ09.1130) partial mRNA
Length = 1440
Score = 128 bits (322), Expect = 5e-28, Method: Composition-based stats.
Identities = 100/166 (60%), Positives = 121/166 (72%)
Frame = -1
Query: 1 VLSRXGRIERRADGDESTRDGVLXHVILRLESNRACLQRTVGEAAALFVGAPUAHQARTD 60
VL+R GR+E RADGDE+ R+GVL +VILRLE NRA QR +GEAAAL VGA AHQARTD
Sbjct: 1074 VLTRQGRVEGRADGDEAARNGVLQYVILRLERNRARFQRAIGEAAALLVGAA*AHQARTD 895
Query: 61 LHHLPHFDDTLRDSATSHAAFKALNVALTRLVDVKGXXXXXXXXXXXXXXXXXXVEEILX 120
LHHL H DD LRD TSHA +ALNVAL LV+V+ VEE+L
Sbjct: 894 LHHLSHLDDALRDCPTSHATLQALNVALAWLVNVERTHDCHAHRRLQLAHRHRDVEEVL* 715
Query: 121 XIIHVALQLRRNRHDRHIQRDVVQVGADLAVLIVRLYLAHKVNLVL 166
++HVALQLRR+RH+RHIQ DVV+VGA++AVL+V L+L K++LVL
Sbjct: 714 EVVHVALQLRRDRHNRHIQGDVVEVGANMAVLVVCLHLTDKIDLVL 577
>ref|XM_001681229.1| Leishmania major eukaryotic translation initiation factor 2 subunit,
putative (LmjF09.1070) partial mRNA
Length = 1440
Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats.
Identities = 104/166 (62%), Positives = 121/166 (72%)
Frame = -1
Query: 1 VLSRXGRIERRADGDESTRDGVLXHVILRLESNRACLQRTVGEAAALFVGAPUAHQARTD 60
VL+R GR+E RADGDE+ R+GVL +VILRLESNRA QR VGEAAAL VGA AHQA D
Sbjct: 1074 VLTRQGRVEGRADGDEAARNGVLQYVILRLESNRARFQRAVGEAAALLVGAA*AHQAGAD 895
Query: 61 LHHLPHFDDTLRDSATSHAAFKALNVALTRLVDVKGXXXXXXXXXXXXXXXXXXVEEILX 120
LHHLPH DDTLRD ATSH + LNVALT LV+VK VEE+L
Sbjct: 894 LHHLPHLDDTLRDCATSHPTLQTLNVALTWLVNVKRAHDRHAYWRLQLAHRHRDVEEVL* 715
Query: 121 XIIHVALQLRRNRHDRHIQRDVVQVGADLAVLIVRLYLAHKVNLVL 166
++HVALQLRR+RH+RHIQ DVV+VGA +AVL+V L+L KV+LVL
Sbjct: 714 EVVHVALQLRRDRHNRHIQGDVVEVGAHMAVLVVCLHLTDKVDLVL 577
>ref|XM_816660.1| Trypanosoma cruzi strain CL Brener eukaryotic translation initiation
factor 2 subunit partial mRNA
Length = 1434
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 51/155 (32%), Positives = 80/155 (51%), Gaps = 1/155 (0%)
Frame = -1
Query: 13 DGDESTRDGVLXHVILRLESNRACLQRTVGEAAALFVGAPUAHQARTDLHHLPHFDDTLR 72
+G+ TRD VL ++LRL+ RAC Q + E + H A +L L ++
Sbjct: 1038 NGN*PTRDRVLQ*IVLRLQR*RACTQGSAAEGSTRL----RMHLAGANLQDLIDSNNAPC 871
Query: 73 DSATSHAAFKALNVALTRLVDVKGXXXXXXXXXXXXXXXXXXVEEILXXIIHVALQLRRN 132
SA HA + LNV TR VDVKG + ++L ++ +A +L N
Sbjct: 870 YSAPRHATTQVLNVHFTRFVDVKGAHHRHVSRAIQLTGRKRNMAQVLQKVVDIAFKLSGN 691
Query: 133 RHDRHIQRD-VVQVGADLAVLIVRLYLAHKVNLVL 166
+D +I+ + V V ++L +L++R+YLA KVNL+L
Sbjct: 690 GNDGNIRSNRAVNVVSNLVILVLRVYLADKVNLIL 586
>ref|XM_799069.1| Trypanosoma cruzi strain CL Brener eukaryotic translation initiation
factor 2 subunit partial mRNA
Length = 1434
Score = 63.2 bits (152), Expect = 3e-08, Method: Composition-based stats.
Identities = 51/155 (32%), Positives = 80/155 (51%), Gaps = 1/155 (0%)
Frame = -1
Query: 13 DGDESTRDGVLXHVILRLESNRACLQRTVGEAAALFVGAPUAHQARTDLHHLPHFDDTLR 72
+G+ TRD VL ++LRL+ RAC Q + E + H A +L L ++
Sbjct: 1038 NGN*PTRDRVLQ*IVLRLQR*RACTQGSAAEGSTRL----RMHLAGANLQDLIDSNNAPC 871
Query: 73 DSATSHAAFKALNVALTRLVDVKGXXXXXXXXXXXXXXXXXXVEEILXXIIHVALQLRRN 132
SA HAA + LNV TR VDVKG + ++L +I +A +L N
Sbjct: 870 YSAPRHAATQVLNVHFTRFVDVKGAHHRHVSRAI*LTGRKRNMAQVLQKVIDIAFKLSGN 691
Query: 133 RHDRHIQRD-VVQVGADLAVLIVRLYLAHKVNLVL 166
+ +I+ + V V ++L +L++R+Y A+KVNL+L
Sbjct: 690 GDNGNIRSNCAVNVVSNLVILVLRVYFANKVNLIL 586
>ref|XM_824289.1| Trypanosoma brucei TREU927 eukaryotic translation initiation factor 2
gamma (Tb11.01.4830) partial mRNA
Length = 1434
Score = 57.8 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 54/167 (32%), Positives = 82/167 (49%), Gaps = 1/167 (0%)
Frame = -1
Query: 1 VLSRXGRIERRADGDESTRDGVLXHVILRLESNRACLQRTVGEAAALFVGAPUAHQARTD 60
VL+R ++R GD++T VL V+L L R QR E ++ H + +
Sbjct: 1074 VLTRQCGVKRGPHGDKTTWYCVLQRVVLCL*R*RPGSQRCTAECSSRLC----VHLSWPN 907
Query: 61 LHHLPHFDDTLRDSATSHAAFKALNVALTRLVDVKGXXXXXXXXXXXXXXXXXXVEEILX 120
L++L H +TL H A ++L + LTRLV+V+G ++L
Sbjct: 906 LNNLIHTKNTLNHGTPCHTASQSLYIHLTRLVNVEGAHHRHPCGTIKLTRGKGHTAQVLQ 727
Query: 121 XIIHVALQLRRNRHDRHIQRD-VVQVGADLAVLIVRLYLAHKVNLVL 166
IIH+ALQL +DR + + V V A L VLI+ + ++KVN VL
Sbjct: 726 QIIHIALQLCGYGNDRSTEPNGAVNVVAYLMVLILCVDFSNKVNFVL 586
>gb|AC166553.2| Nectria haematococca clone JGIAYWI-9O2, complete sequence
Length = 38247
Score = 48.9 bits (115), Expect = 6e-04, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 51/91 (56%)
Frame = -1
Query: 6 GRIERRADGDESTRDGVLXHVILRLESNRACLQRTVGEAAALFVGAPUAHQARTDLHHLP 65
GR++ D DE+T DGVL V L +E N + E A+ G H R+DL+ +
Sbjct: 18267 GRVDSGTDTDETTGDGVLEVVGLGVERNDSAEDGGTLEGTAVIAG----HNTRSDLNLVT 18100
Query: 66 HFDDTLRDSATSHAAFKALNVALTRLVDVKG 96
D+T++D TS+ + +N++ T LVDV+G
Sbjct: 18099 QLDNTVKDRTTSNTTLEVINLS-TGLVDVEG 18010
>ref|XM_001681230.1| Leishmania major translation initiation factor eif-2b gamma subunit,
putative (LmjF09.1090) partial mRNA
Length = 1806
Score = 42.0 bits (97), Expect = 0.071, Method: Composition-based stats.
Identities = 37/110 (33%), Positives = 47/110 (42%), Gaps = 20/110 (18%)
Frame = -1
Query: 1 VLSRXGRIERRADGDESTRDGVLXHVILRLESNRACLQ--------RTVGEAAAL----- 47
VL R G +ERRA+ DE+ G L V+LRLES+ Q R G+ L
Sbjct: 1146 VLPRQGWVERRANRDEAAWHGELQLVLLRLESHNGGAQWDGVQLARRWGGDVGQLSTRQD 967
Query: 48 -------FVGAPUAHQARTDLHHLPHFDDTLRDSATSHAAFKALNVALTR 90
V P Q R D + + DT RDSAT A + L +R
Sbjct: 966 IRPPRQYTVAPPEHQQPRDDFNFVSDAQDTGRDSATDDTALERLRTVASR 817
>gb|CP000586.1| Ostreococcus lucimarinus CCE9901 chromosome 6, complete sequence
Length = 818664
Score = 39.7 bits (91), Expect = 0.36, Method: Composition-based stats.
Identities = 46/161 (28%), Positives = 69/161 (42%), Gaps = 1/161 (0%)
Frame = +3
Query: 7 RIERRADGDESTRDGVLXHVILRLESNRACLQRTVGEAAALFVGAPUAHQARTDLHHLPH 66
R+ RR D D +TRDGVL V+LR + N A + A F A +L L +
Sbjct: 701628 RVARRTDAD*TTRDGVLKQVLLRKQRNDA----SHDGLALNFPIRVLGDDAGANLDVLTN 701795
Query: 67 FDDTLRDSATSHAAFKALNVALTRLVDVKGXXXXXXXXXXXXXXXXXXVEEILXXIIHVA 126
L + +T AA N+ + + +++L + V
Sbjct: 701796 LQHALENRSTGDAALNFFNLCAGFVHVERSNDDHVRRGDEIPLRHRNLFDDVLAHDVDVV 701975
Query: 127 LQLRRNR-HDRHIQRDVVQVGADLAVLIVRLYLAHKVNLVL 166
L LRR+R H R I+ + AD VL+ R L H++NL+L
Sbjct: 701976 L*LRRDRNHGRTIRDRALNEFADRIVLVRRRVLLHQINLIL 702098
>ref|XM_001418515.1| Ostreococcus lucimarinus CCE9901 predicted protein (OSTLU_32338)
mRNA, complete cds
Length = 1614
Score = 39.3 bits (90), Expect = 0.46, Method: Composition-based stats.
Identities = 46/161 (28%), Positives = 69/161 (42%), Gaps = 1/161 (0%)
Frame = -3
Query: 7 RIERRADGDESTRDGVLXHVILRLESNRACLQRTVGEAAALFVGAPUAHQARTDLHHLPH 66
R+ RR D D +TRDGVL V+LR + N A + A F A +L L +
Sbjct: 1219 RVARRTDAD*TTRDGVLKQVLLRKQRNDA----SHDGLALNFPIRVLGDDAGANLDVLTN 1052
Query: 67 FDDTLRDSATSHAAFKALNVALTRLVDVKGXXXXXXXXXXXXXXXXXXVEEILXXIIHVA 126
L + +T AA N+ + + +++L + V
Sbjct: 1051 LQHALENRSTGDAALNFFNLCAGFVHVERSNDDHVRRGDEIPLRHRNLFDDVLAHDVDVV 872
Query: 127 LQLRRNR-HDRHIQRDVVQVGADLAVLIVRLYLAHKVNLVL 166
L LRR+R H R I+ + AD VL+ R L H++NL+L
Sbjct: 871 L*LRRDRNHGRTIRDRALNEFADRIVLVRRRVLLHQINLIL 749
>ref|XM_001979984.1| Drosophila erecta eukaryotic translation initiation factor 2 gamma
(Dere\eIF2gamma), mRNA
Length = 1428
Score = 38.9 bits (89), Expect = 0.60, Method: Composition-based stats.
Identities = 48/162 (29%), Positives = 71/162 (43%), Gaps = 2/162 (1%)
Frame = -1
Query: 7 RIERRADGDESTRDGVLXHVILRLESNRACLQRTVGEAAALFVGAPUAHQARTDLHHLPH 66
RI+ A+ +++ GVL V+L E + T G+ A +G H ART L L H
Sbjct: 1032 RIDLGANTNQTAGHGVLQLVLLGEERDDTGEDWTAGDVAIAVLG----HDARTHLDLLTH 865
Query: 67 FDDTLRDSATSHAAFKALNVALTRLVDVKGXXXXXXX-XXXXXXXXXXXVEEILXXIIHV 125
+ +D AT H A + ++ LV VKG V +L I V
Sbjct: 864 LKNAAQDGATGHTALQVCHLT-AWLVHVKGSDDDQTGWGVEVARRYWDLVYNVLAEHIDV 688
Query: 126 ALQLRRNRHDRH-IQRDVVQVGADLAVLIVRLYLAHKVNLVL 166
+L +R+DR + + DL VL RL L +++LVL
Sbjct: 687 VFKLG*DRNDRSALSYGALDEFGDLLVLFFRLALLDQIDLVL 562
>ref|XM_001707652.1| Giardia lamblia ATCC 50803 Translation initiation factor 2 gamma
subunit (GL50803_2970) partial mRNA
Length = 1437
Score = 38.5 bits (88), Expect = 0.76, Method: Composition-based stats.
Identities = 29/96 (30%), Positives = 49/96 (51%)
Frame = -1
Query: 1 VLSRXGRIERRADGDESTRDGVLXHVILRLESNRACLQRTVGEAAALFVGAPUAHQARTD 60
VL+R + ADGDE TRDG+ V++ L+ + C + A+L + + +
Sbjct: 1050 VLARV*GVYEGADGDEPTRDGIAQLVLICLDGDNLCYEGIARALASLLIHDGVSG---AN 880
Query: 61 LHHLPHFDDTLRDSATSHAAFKALNVALTRLVDVKG 96
H + L+ +TS+ A ++V + RLVDV+G
Sbjct: 879 FHGVSQLKHALKKRSTSNTAANVIDV-IPRLVDVEG 775
>ref|XM_001562678.1| Leishmania braziliensis MHOM/BR/75/M2904 translation initiation
factor eif-2b gamma subunit, putative (LbrM09_V2.1140)
partial mRNA
Length = 1809
Score = 37.0 bits (84), Expect = 2.1, Method: Composition-based stats.
Identities = 35/110 (31%), Positives = 49/110 (44%), Gaps = 20/110 (18%)
Frame = -1
Query: 1 VLSRXGRIERRADGDESTRDGVLXHVILRLESN--------------RAC-----LQRTV 41
VL R GR++ A+G+E+ G L V+LRLES+ R C L R
Sbjct: 1146 VLPR*GRVKGGANGNEAAWHGELQLVLLRLESHNGGAQWDSVQLTRRRGCDVGGLLTRQD 967
Query: 42 GEAAALFVGAPUAH-QARTDLHHLPHFDDTLRDSATSHAAFKALNVALTR 90
++ AP H Q+R + +P DT RDSA A + V +R
Sbjct: 966 IRSSWQHTVAPSKHQQSRDNFDFVPDAQDTRRDSAADDATLERHRVVASR 817
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.342 0.150 5.30e-313
Gapped
Lambda K H
0.267 0.0410 3.77e-310
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 325763538
Number of extensions: 3153693
Number of successful extensions: 28560
Number of sequences better than 10: 5
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 28556
Number of HSP's successfully gapped: 5
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 15 (7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (19.2 bits)
S2: 78 (34.7 bits)
Query= gi|154333023|ref|NC_009301.1|:subseq(421455,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 9
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
ref|XM_001562677.1| Leishmania braziliensis MHOM/BR/75/M2904 euk... 232 4e-59
emb|AM494946.1| Leishmania braziliensis chromosome 9 232 4e-59
ref|XM_001463533.1| Leishmania infantum JPCM5 eukaryotic transla... 205 4e-51
emb|AM502227.1| Leishmania infantum chromosome 9 205 4e-51
ref|XM_001681229.1| Leishmania major eukaryotic translation init... 201 5e-50
ref|XM_799069.1| Trypanosoma cruzi strain CL Brener eukaryotic t... 116 2e-24
ref|XM_816660.1| Trypanosoma cruzi strain CL Brener eukaryotic t... 115 6e-24
ref|XM_824289.1| Trypanosoma brucei TREU927 eukaryotic translati... 104 1e-20
ref|XM_001999671.1| Drosophila mojavensis GI24667 (Dmoj\GI24667)... 79 6e-13
ref|XM_002031065.1| Drosophila sechellia GM25792 (Dsec\GM25792),... 74 1e-11
ref|XM_002053667.1| Drosophila virilis GJ24041 (Dvir\GJ24041), mRNA 74 1e-11
ref|XM_001989494.1| Drosophila grimshawi GH18750 (Dgri\GH18750),... 74 1e-11
gb|AE014297.2| Drosophila melanogaster chromosome 3R, complete s... 74 2e-11
gb|AC009904.7| Drosophila melanogaster, chromosome 3R, region 88... 74 2e-11
emb|AJ290956.2|DME290956 Drosophila melanogaster eIF2g gene for ... 74 2e-11
gb|AC007648.6|AC007648 Drosophila melanogaster, chromosome 3R, r... 74 2e-11
gb|FJ668116.1| Daphnia parvula strain A60 eukaryotic translation... 74 2e-11
gb|FJ668167.1| Daphnia pulex strain MAR eukaryotic translation i... 73 3e-11
emb|AJ719311.1| Gallus gallus mRNA for hypothetical protein, clo... 73 3e-11
emb|CR352843.1| Gallus gallus finished cDNA, clone ChEST124o3 73 3e-11
emb|CR353527.1| Gallus gallus finished cDNA, clone ChEST133m17 73 3e-11
gb|FJ668168.1| Daphnia pulex strain PA32 eukaryotic translation ... 72 5e-11
gb|FJ668165.1| Daphnia pulex strain FAT eukaryotic translation i... 72 6e-11
gb|FJ668164.1| Daphnia pulex strain EB1 eukaryotic translation i... 72 6e-11
gb|FJ668163.1| Daphnia pulex strain DISP14 eukaryotic translatio... 72 6e-11
gb|FJ668162.1| Daphnia pulex strain CC1 eukaryotic translation i... 72 6e-11
gb|FJ668161.1| Daphnia pulex strain BW102 eukaryotic translation... 72 6e-11
ref|XM_002097739.1| Drosophila yakuba GE26397 (Dyak\GE26397), mRNA 72 6e-11
emb|CR723674.2|CNS0GLC0 Tetraodon nigroviridis full-length cDNA 72 8e-11
emb|AJ715857.1| Lithobius forficatus mRNA for eukaryotic transla... 72 9e-11
gb|FJ638127.1| Synthetic construct Drosophila melanogaster clone... 71 9e-11
gb|FJ635033.1| Synthetic construct Drosophila melanogaster clone... 71 9e-11
gb|FJ633858.1| Synthetic construct Drosophila melanogaster clone... 71 9e-11
gb|FJ630018.1| Synthetic construct Drosophila melanogaster clone... 71 9e-11
ref|XM_002103317.1| Drosophila simulans GD20368 (Dsim\GD20368), ... 71 9e-11
gb|BT012446.1| Drosophila melanogaster RE71279 full insert cDNA 71 9e-11
ref|NM_169630.1| Drosophila melanogaster suppressor of variegati... 71 9e-11
ref|NM_169629.1| Drosophila melanogaster suppressor of variegati... 71 9e-11
gb|AY061102.1| Drosophila melanogaster LD09025 full length cDNA 71 9e-11
emb|X80069.1|DM51KDAP D.melanogaster mRNA for 51 kDa protein 71 9e-11
gb|FJ668166.1| Daphnia pulex strain LP8 eukaryotic translation i... 71 1e-10
ref|XM_001979984.1| Drosophila erecta eukaryotic translation ini... 71 1e-10
ref|XM_001699982.1| Chlamydomonas reinhardtii strain CC-503 cw92... 70 2e-10
ref|XM_002195589.1| PREDICTED: Taeniopygia guttata eukaryotic tr... 70 3e-10
gb|BC043966.1| Xenopus laevis eukaryotic translation initiation ... 69 4e-10
ref|XM_002227901.1| Branchiostoma floridae hypothetical protein ... 69 5e-10
ref|XM_002171709.1| Schizosaccharomyces japonicus yFS275 transla... 69 5e-10
gb|BT059206.1| Salmo salar clone ssal-rgf-532-182 Eukaryotic tra... 69 5e-10
ref|XM_002070447.1| Drosophila willistoni GK12089 (Dwil\GK12089)... 69 6e-10
ref|XM_001879676.1| Laccaria bicolor S238N-H82 hypothetical prot... 69 7e-10
gb|BC088563.1| Xenopus tropicalis eukaryotic translation initiat... 69 7e-10
emb|CU329671.1| Schizosaccharomyces pombe chromosome II 68 9e-10
ref|NM_001021805.1| Schizosaccharomyces pombe translation initia... 68 9e-10
gb|U37354.1|SPU37354 Schizosaccharomyces pombe initiation factor... 68 9e-10
ref|XM_001776501.1| Physcomitrella patens subsp. patens predicte... 68 1e-09
ref|XM_001359856.2| Drosophila pseudoobscura pseudoobscura GA196... 68 1e-09
ref|XM_002019663.1| Drosophila persimilis GL12073 (Dper\GL12073)... 68 1e-09
ref|XM_001362496.1| PREDICTED: Monodelphis domestica similar to ... 68 1e-09
ref|XM_002303439.1| Populus trichocarpa predicted protein, mRNA 68 1e-09
ref|XM_001965910.1| Drosophila ananassae GF11769 (Dana\GF11769),... 68 1e-09
ref|NM_058559.5| Caenorhabditis elegans hypothetical protein (Y3... 67 1e-09
ref|XM_313355.3| Anopheles gambiae str. PEST AGAP003597-PA (AgaP... 67 2e-09
emb|AM050265.1| Drosophila nasutoides partial eIF2g gene for put... 67 2e-09
gb|BC043656.1| Mus musculus eukaryotic translation initiation fa... 66 4e-09
emb|AJ006584.1|MMU6584 Mus musculus mRNA for translation initiat... 66 4e-09
ref|XM_001418515.1| Ostreococcus lucimarinus CCE9901 predicted p... 66 4e-09
gb|CP000586.1| Ostreococcus lucimarinus CCE9901 chromosome 6, co... 66 4e-09
emb|AJ715864.1| Forficula auricularia mRNA for eukaryotic transl... 66 4e-09
dbj|AK009448.1| Mus musculus adult male tongue cDNA, RIKEN full-... 65 6e-09
emb|AJ715863.1| Enallagma cyathigerum mRNA for eukaryotic transl... 65 8e-09
dbj|AK231727.1| Sus scrofa mRNA, clone:LNG010016C04, expressed i... 65 9e-09
gb|AY610059.1| Sus scrofa clone Clu_6088.scr.msk.p1.Contig3, mRN... 65 9e-09
ref|XM_001545363.1| Botryotinia fuckeliana B05.10 hypothetical p... 65 1e-08
ref|XM_001667985.1| Caenorhabditis briggsae hypothetical protein... 64 1e-08
ref|XM_002227889.1| Branchiostoma floridae hypothetical protein ... 64 1e-08
emb|AJ715870.1| Bombyx mori mRNA for eukaryotic translation init... 64 1e-08
ref|XM_001833963.1| Coprinopsis cinerea okayama7#130 hypothetica... 64 2e-08
gb|DQ120621.1| Gorilla gorilla eFI-2-gamma gene, partial cds 64 2e-08
ref|XM_002326559.1| Populus trichocarpa predicted protein, mRNA 64 2e-08
gb|BC087847.1| Homo sapiens cDNA clone IMAGE:30389268, partial cds 64 2e-08
gb|DQ120619.1| Homo sapiens eFI-2-gamma gene, partial cds 64 2e-08
ref|XM_001607733.1| PREDICTED: Nasonia vitripennis similar to eu... 64 2e-08
ref|XM_636830.1| Dictyostelium discoideum AX4 translation initia... 64 2e-08
ref|XM_001494201.1| PREDICTED: Equus caballus similar to eukaryo... 64 2e-08
gb|DQ120622.1| Pongo pygmaeus eFI-2-gamma gene, partial cds 64 2e-08
dbj|AB451353.1| Homo sapiens EIF2S3 mRNA for eukaryotic translat... 63 3e-08
dbj|AB451230.1| Homo sapiens EIF2S3 mRNA for eukaryotic translat... 63 3e-08
dbj|AK290397.1| Homo sapiens cDNA FLJ78120 complete cds, highly ... 63 3e-08
gb|DQ894977.2| Synthetic construct Homo sapiens clone IMAGE:1000... 63 3e-08
gb|DQ891794.2| Synthetic construct clone IMAGE:100004424; FLH179... 63 3e-08
ref|NM_001415.3| Homo sapiens eukaryotic translation initiation ... 63 3e-08
ref|XM_001089902.1| PREDICTED: Macaca mulatta similar to eukaryo... 63 3e-08
gb|BC022192.1| Homo sapiens cDNA clone IMAGE:3677347, **** WARNI... 63 3e-08
gb|BC019906.1| Homo sapiens eukaryotic translation initiation fa... 63 3e-08
dbj|AK222577.1| Homo sapiens mRNA for eukaryotic translation ini... 63 3e-08
emb|CR860221.1| Pongo abelii mRNA; cDNA DKFZp469K1719 (from clon... 63 3e-08
gb|L19161.1|HUMIEF2G Human translation initiation factor eIF-2 g... 63 3e-08
ref|XM_001869526.1| Culex quinquefasciatus conserved hypothetica... 63 3e-08
ref|XM_970775.1| PREDICTED: Tribolium castaneum similar to heter... 63 3e-08
ref|XM_001149413.1| PREDICTED: Pan troglodytes similar to eFI-2-... 63 3e-08
ref|XM_001149353.1| PREDICTED: Pan troglodytes similar to eFI-2-... 63 3e-08
gb|DQ120620.1| Pan troglodytes eFI-2-gamma gene, partial cds 63 3e-08
ref|XM_001239932.1| Coccidioides immitis RS hypothetical protein... 63 4e-08
ref|XM_001951564.1| PREDICTED: Acyrthosiphon pisum similar to tr... 62 5e-08
dbj|AP006498.2| Cyanidioschyzon merolae DNA, chromosome 16, comp... 62 5e-08
gb|AY439391.1| Armigeres subalbatus ASAP ID: 40885 translation i... 62 5e-08
dbj|AK312247.1| Homo sapiens cDNA, FLJ92541, highly similar to H... 62 5e-08
gb|AC068775.52| Homo sapiens 12 BAC RP11-291B21 (Roswell Park Ca... 62 6e-08
ref|XM_001513134.1| PREDICTED: Ornithorhynchus anatinus hypothet... 62 6e-08
emb|CR685285.2|CNS0FRPT Tetraodon nigroviridis full-length cDNA 62 6e-08
emb|CR859308.1| Pongo abelii mRNA; cDNA DKFZp469N0112 (from clon... 62 7e-08
gb|EU208626.1| Armigeres subalbatus ASAP ID ACN-0187293 Suppress... 62 7e-08
ref|XM_644750.1| Entamoeba histolytica HM-1:IMSS eukaryotic tran... 62 8e-08
gb|BT038032.1| Zea mays full-length cDNA clone ZM_BFb0208C04 mRN... 62 8e-08
gb|AY104708.2| Zea mays PCO146692 mRNA sequence 62 8e-08
emb|AJ715869.1| Scoliopterix libatrix mRNA for eukaryotic transl... 61 9e-08
ref|XR_042844.1| PREDICTED: Bos taurus misc_RNA (LOC782293), mis... 61 1e-07
ref|XM_001586215.1| Sclerotinia sclerotiorum 1980 hypothetical p... 61 1e-07
emb|AJ010980.1|DDI010980 Dictyostelium discoideum mRNA for trans... 61 1e-07
ref|XR_027832.2| PREDICTED: Bos taurus misc_RNA (LOC783421), mis... 61 1e-07
emb|BX814672.1|CNS0AC08 Arabidopsis thaliana Full-length cDNA Co... 61 1e-07
emb|AJ715866.1| Locusta migratoria mRNA for eukaryotic translati... 61 1e-07
ref|NM_100298.2| Arabidopsis thaliana EIF2 GAMMA (eukaryotic tra... 61 1e-07
gb|AY092973.1| Arabidopsis thaliana strong similarity to initiat... 61 1e-07
gb|AF353097.1|AF353097 Arabidopsis thaliana protein synthesis in... 61 1e-07
gb|BT002095.1| Arabidopsis thaliana strong similarity to initiat... 61 1e-07
gb|AY648723.1| Danio rerio eukaryotic translation initiation fac... 61 1e-07
gb|BC055248.1| Danio rerio eukaryotic translation initiation fac... 61 1e-07
emb|AJ715867.1| Aphis sambuci eIF2g gene for eukaryotic translat... 61 1e-07
ref|XM_770662.1| Cryptococcus neoformans var. neoformans B-3501A... 61 1e-07
ref|XM_570286.1| Cryptococcus neoformans var. neoformans JEC21 e... 61 1e-07
ref|XR_023980.1| PREDICTED: Pan troglodytes similar to translati... 60 2e-07
ref|XR_011106.1| PREDICTED: Macaca mulatta similar to eukaryotic... 60 2e-07
emb|CR730006.2|CNS0GQ7W Tetraodon nigroviridis full-length cDNA 60 2e-07
gb|AC166553.2| Nectria haematococca clone JGIAYWI-9O2, complete ... 60 2e-07
emb|CR684400.2|CNS0FR18 Tetraodon nigroviridis full-length cDNA 60 3e-07
ref|XM_675022.1| Plasmodium berghei strain ANKA eukaryotic trans... 60 3e-07
gb|BC112875.1| Bos taurus eukaryotic translation initiation fact... 60 3e-07
gb|DQ446523.1| Arabidopsis thaliana clone pENTR221-At2g18720 euk... 60 3e-07
gb|DQ446522.1| Arabidopsis thaliana clone pENTR221-At2g18720 euk... 60 3e-07
ref|NM_127428.1| Arabidopsis thaliana translation factor, nuclei... 60 3e-07
ref|XM_537983.2| PREDICTED: Canis familiaris similar to eukaryot... 60 3e-07
ref|XM_001630853.1| Nematostella vectensis predicted protein (NE... 60 3e-07
gb|DQ120623.1| Hylobates lar eFI-2-gamma gene, partial cds 59 4e-07
gb|BC158736.1| Rattus norvegicus eukaryotic translation initiati... 59 4e-07
ref|XM_001712477.1| Hemiselmis andersenii eif2G (HAN_3g394) mRNA... 59 4e-07
gb|CP000883.1| Hemiselmis andersenii chromosome 3, complete sequ... 59 4e-07
ref|XM_001901211.1| Brugia malayi eIF2 gamma partial mRNA 59 4e-07
gb|BC139235.1| Mus musculus eukaryotic translation initiation fa... 59 5e-07
gb|BC139234.1| Mus musculus eukaryotic translation initiation fa... 59 5e-07
ref|XM_001481129.1| PREDICTED: Mus musculus similar to translati... 59 5e-07
ref|XM_001472848.1| PREDICTED: Mus musculus similar to translati... 59 5e-07
ref|NM_012010.3| Mus musculus eukaryotic translation initiation ... 59 5e-07
emb|CT867957.7| Mouse DNA sequence from clone RP23-223P15 on chr... 59 5e-07
gb|BC063755.1| Mus musculus eukaryotic translation initiation fa... 59 5e-07
gb|BC036993.1| Mus musculus eukaryotic translation initiation fa... 59 5e-07
dbj|AK128949.1| Mus musculus cDNA fis, clone TRACH3008061, highl... 59 5e-07
dbj|AK150095.1| Mus musculus bone marrow macrophage cDNA, RIKEN ... 59 5e-07
dbj|AK146900.1| Mus musculus 17 days embryo stomach cDNA, RIKEN ... 59 5e-07
dbj|AK165866.1| Mus musculus lung RCB-0558 LLC cDNA, RIKEN full-... 59 5e-07
dbj|AK010819.1| Mus musculus ES cells cDNA, RIKEN full-length en... 59 5e-07
emb|AJ006587.1|MMU6587 Mus musculus mRNA for translation initiat... 59 5e-07
gb|AC125036.5| Mus musculus BAC clone RP23-330P20 from chromosom... 59 5e-07
ref|NM_001100542.1| Rattus norvegicus eukaryotic translation ini... 59 5e-07
gb|BC166783.1| Rattus norvegicus eukaryotic translation initiati... 59 5e-07
gb|BC091286.1| Rattus norvegicus eukaryotic translation initiati... 59 5e-07
emb|AJ715868.1| Cercopis vulnerata mRNA for eukaryotic translati... 59 6e-07
gb|EU879974.1| Felis catus EIF2S3X mRNA, complete sequence 59 6e-07
dbj|AK151579.1| Mus musculus bone marrow macrophage cDNA, RIKEN ... 59 6e-07
dbj|AK153568.1| Mus musculus bone marrow macrophage cDNA, RIKEN ... 59 6e-07
ref|XM_753413.1| Ustilago maydis 521 hypothetical protein (UM023... 59 7e-07
ref|XM_001482340.1| Pichia guilliermondii ATCC 6260 eukaryotic t... 59 8e-07
dbj|AK286795.1| Glycine max cDNA, clone: GMFL01-36-N09 58 8e-07
ref|XM_001271648.1| Aspergillus clavatus NRRL 1 translation init... 58 8e-07
ref|XM_001220676.1| Chaetomium globosum CBS 148.51 hypothetical ... 58 1e-06
ref|XM_001746957.1| Monosiga brevicollis MX1 predicted protein M... 58 1e-06
gb|DQ206596.1| Monosiga brevicollis isolate TOA6 eukaryotic tran... 58 1e-06
emb|AM920437.1| Penicillium chrysogenum Wisconsin 54-1255 comple... 58 1e-06
ref|XM_001401525.1| Aspergillus niger CBS 513.88 hypothetical pr... 58 1e-06
emb|AM270071.1| Aspergillus niger contig An04c0100, complete genome 58 1e-06
emb|CU676477.1| Synthetic construct Homo sapiens gateway clone I... 58 1e-06
ref|XM_002112854.1| Trichoplax adhaerens eukaryotic translation ... 58 1e-06
gb|AY087689.1| Arabidopsis thaliana clone 37699 mRNA, complete s... 58 1e-06
gb|EU879975.1| Felis catus EIF2S3Y mRNA, complete sequence 58 1e-06
gb|BT066809.1| Zea mays full-length cDNA clone ZM_BFb0077K11 mRN... 57 1e-06
gb|EU966655.1| Zea mays clone 295952 eukaryotic translation init... 57 1e-06
ref|XM_781988.2| PREDICTED: Strongylocentrotus purpuratus simila... 57 1e-06
ref|XM_001178408.1| PREDICTED: Strongylocentrotus purpuratus sim... 57 1e-06
ref|XM_002162203.1| PREDICTED: Hydra magnipapillata similar to e... 57 1e-06
emb|AJ715862.1| Lepismachilis sp. VK-2004 mRNA for eukaryotic tr... 57 2e-06
ref|XM_959373.2| Neurospora crassa OR74A eukaryotic translation ... 57 2e-06
emb|BX815768.1|CNS0ABJW Arabidopsis thaliana Full-length cDNA Co... 42 2e-06
gb|FJ627276.1| Bos taurus Eif2s3y mRNA, partial cds 57 2e-06
ref|XM_719183.1| Plasmodium yoelii yoelii str. 17XNL translation... 57 2e-06
ref|NM_001072831.1| Oryza sativa (japonica cultivar-group) Os12g... 57 3e-06
dbj|AK069023.1| Oryza sativa Japonica Group cDNA clone:J023003F1... 57 3e-06
ref|XM_001821269.1| Aspergillus oryzae RIB40 hypothetical protei... 57 3e-06
dbj|AB225679.1| Aspergillus oryzae cDNA, contig sequence: AoEST2534 57 3e-06
dbj|AP007157.1| Aspergillus oryzae RIB40 genomic DNA, SC023 57 3e-06
ref|XM_739230.1| Plasmodium chabaudi chabaudi eukaryotic transla... 57 3e-06
gb|AE017344.1| Cryptococcus neoformans var. neoformans JEC21 chr... 57 3e-06
ref|XM_001912981.1| Podospora anserina DSM 980 hypothetical prot... 56 4e-06
emb|CU633438.1| Podospora anserina genomic DNA chromosome 1, sup... 56 4e-06
emb|BX817816.1|CNS0AB86 Arabidopsis thaliana Full-length cDNA Co... 56 4e-06
gb|BT030491.1| Bos taurus eukaryotic translation initiation fact... 56 5e-06
ref|XM_001214623.1| Aspergillus terreus NIH2624 eukaryotic trans... 55 5e-06
ref|XM_001540316.1| Ajellomyces capsulatus NAm1 eukaryotic trans... 55 6e-06
emb|CU227742.1| Populus EST from severe drought-stressed leaves 55 8e-06
ref|XM_002296319.1| Thalassiosira pseudonana CCMP1335 chromosome... 54 1e-05
gb|CP001160.1| Thalassiosira pseudonana CCMP1335 chromosome 7, c... 54 1e-05
gb|CP000505.1| Thermofilum pendens Hrk 5, complete genome 54 1e-05
ref|NM_001073765.1| Oryza sativa (japonica cultivar-group) Os12g... 54 1e-05
dbj|AK122105.1| Oryza sativa Japonica Group cDNA clone:J033126A1... 54 1e-05
dbj|AK061482.1| Oryza sativa Japonica Group cDNA clone:006-308-H... 54 1e-05
gb|EF678455.1| Picea sitchensis clone WS02922_I23 unknown mRNA 54 1e-05
gb|EF676456.1| Picea sitchensis clone WS02738_E16 unknown mRNA 54 1e-05
emb|CR380955.2| Candida glabrata strain CBS138 chromosome I comp... 54 2e-05
ref|XM_447610.1| Candida glabrata CBS138 hypothetical protein (C... 54 2e-05
ref|XM_453532.1| Kluyveromyces lactis NRRL Y-1140, KLLA0D10571g ... 54 2e-05
emb|CR382124.1| Kluyveromyces lactis strain NRRL Y-1140 chromoso... 54 2e-05
ref|XM_001093771.1| PREDICTED: Macaca mulatta similar to eukaryo... 54 2e-05
ref|XM_656982.1| Aspergillus nidulans FGSC A4 hypothetical prote... 54 2e-05
emb|AJ290965.1|LDE290965 Leptinotarsa decemlineata partial mRNA ... 54 2e-05
emb|AJ290964.1|LDE290964 Leptinotarsa decemlineata mRNA for euka... 54 2e-05
gb|EF085085.1| Picea sitchensis clone WS02910_N24 unknown mRNA 54 2e-05
ref|XR_035891.2| PREDICTED: Equus caballus misc_RNA (LOC10005736... 53 3e-05
ref|XR_030332.1| PREDICTED: Monodelphis domestica similar to tra... 53 3e-05
gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome 53 3e-05
ref|NM_202838.1| Arabidopsis thaliana eukaryotic translation ini... 53 4e-05
ref|XM_001681230.1| Leishmania major translation initiation fact... 52 4e-05
ref|XM_001112836.1| PREDICTED: Macaca mulatta similar to eukaryo... 52 6e-05
gb|AE014187.1| Plasmodium falciparum 3D7 chromosome 14, complete... 52 6e-05
ref|XM_001348241.1| Plasmodium falciparum 3D7 eukaryotic transla... 52 6e-05
gb|BT013206.1| Lycopersicon esculentum clone 134415F, mRNA sequence 52 6e-05
ref|XM_363666.2| Magnaporthe grisea 70-15 hypothetical protein (... 52 7e-05
ref|XM_001794019.1| Phaeosphaeria nodorum SN15 hypothetical pro... 52 8e-05
ref|XR_045590.1| PREDICTED: Sus scrofa misc_RNA (LOC100151974), ... 52 9e-05
ref|XM_001707652.1| Giardia lamblia ATCC 50803 Translation initi... 51 1e-04
gb|EU028334.1| Lactuca sativa EIF2 gamma protein mRNA, partial cds 51 1e-04
gb|AY087392.1| Arabidopsis thaliana clone 34867 mRNA, complete s... 40 1e-04
ref|XM_626738.1| Cryptosporidium parvum Iowa II eIF2G GTpase. eu... 51 1e-04
gb|AC025716.2| Caenorhabditis elegans cosmid Y39G10AR, complete ... 51 1e-04
ref|XM_001385096.1| Pichia stipitis CBS 6054 hypothetical protei... 51 1e-04
gb|CP000499.1| Pichia stipitis CBS 6054 chromosome 5, complete s... 51 1e-04
ref|NM_117943.2| Arabidopsis thaliana eukaryotic translation ini... 40 1e-04
ref|XM_661743.1| Cryptosporidium hominis TU502 translation initi... 51 1e-04
ref|XM_001643484.1| Vanderwaltozyma polyspora DSM 70294 hypothet... 51 2e-04
gb|U18778.1|SCE9537 Saccharomyces cerevisiae chromosome V cosmid... 50 2e-04
gb|L04268.1|YSCGCD11NR Saccharomyces cerevisiae negative regulat... 50 2e-04
ref|XM_002260856.1| Plasmodium knowlesi strain H eukaryotic tran... 50 2e-04
emb|AM910995.1| Plasmodium knowlesi strain H chromosome 13, comp... 50 2e-04
emb|AJ715860.1| Oniscus asellus mRNA for eukaryotic translation ... 50 2e-04
emb|AJ715871.1| Araneus quadratus mRNA for eukaryotic translatio... 50 2e-04
ref|XM_746974.2| Aspergillus fumigatus Af293 translation initiat... 50 2e-04
ref|XM_002139570.1| Cryptosporidium muris RN66 eukaryotic transl... 50 2e-04
ref|XM_001939086.1| Pyrenophora tritici-repentis Pt-1C-BFP eukar... 50 2e-04
gb|CP000099.1| Methanosarcina barkeri str. Fusaro, complete genome 50 2e-04
ref|XM_387019.1| Gibberella zeae PH-1 hypothetical protein parti... 50 3e-04
ref|XM_499738.1| Yarrowia lipolytica YALI0A03839p (YALI0A03839g)... 50 3e-04
emb|CR382127.1| Yarrowia lipolytica strain CLIB122 chromosome A ... 50 3e-04
ref|XM_002124948.1| PREDICTED: Ciona intestinalis similar to euk... 50 3e-04
ref|XM_002148931.1| Penicillium marneffei ATCC 18224 translation... 50 3e-04
ref|XM_001524853.1| Lodderomyces elongisporus NRRL YB-4239 eukar... 49 4e-04
emb|FM992692.1| Candida dubliniensis CD36 chromosome 5, complete... 49 4e-04
ref|XM_001646190.1| Vanderwaltozyma polyspora DSM 70294 hypothet... 49 5e-04
ref|XM_001616797.1| Plasmodium vivax SaI-1 eukaryotic translatio... 49 7e-04
ref|XM_001610298.1| Babesia bovis translation initiation factor ... 49 7e-04
ref|XM_001267265.1| Neosartorya fischeri NRRL 181 translation in... 49 8e-04
gb|AE008384.1| Methanosarcina mazei strain Goe1, complete genome 48 0.001
ref|XM_001729001.1| Malassezia globosa CBS 7966 hypothetical pro... 48 0.001
emb|CR382137.2| Debaryomyces hansenii strain CBS767 chromosome E... 48 0.001
gb|CP001338.1| Candidatus Methanosphaerula palustris E1-9c, comp... 48 0.001
ref|XR_023473.1| PREDICTED: Pan troglodytes similar to translati... 48 0.001
dbj|AK171317.1| Mus musculus B6-derived CD11 +ve dendritic cells... 48 0.001
emb|AJ715858.1| Daphnia magna eIF2g gene for eukaryotic translat... 47 0.001
ref|XM_001019409.1| Tetrahymena thermophila SB210 eukaryotic tra... 47 0.002
gb|DQ516848.1| Methanocaldococcus jannaschii spike-in control MJ... 46 0.003
gb|L77117.1| Methanocaldococcus jannaschii DSM 2661, complete ge... 46 0.003
ref|XM_001463534.1| Leishmania infantum JPCM5 translation initia... 46 0.004
gb|AE016815.4| Ashbya gossypii (= Eremothecium gossypii) ATCC 10... 46 0.005
ref|NM_208476.1| Ashbya gossypii ATCC 10895 hypothetical protein... 46 0.005
gb|AC198188.3| MACACA MULATTA BAC clone CH250-392N11 from chromo... 45 0.007
ref|XM_715569.1| Candida albicans SC5314 likely translation init... 45 0.008
ref|XM_715441.1| Candida albicans SC5314 likely translation init... 45 0.008
emb|BX950229.1| Methanococcus maripaludis strain S2, complete se... 44 0.018
ref|XM_001562678.1| Leishmania braziliensis MHOM/BR/75/M2904 tra... 43 0.028
ref|XM_002184255.1| Phaeodactylum tricornutum CCAP 1055/1 predic... 43 0.036
gb|CP000855.1| Thermococcus onnurineus NA1, complete genome 42 0.046
emb|BX815157.1|CNS0AEL7 Arabidopsis thaliana Full-length cDNA Co... 42 0.070
emb|AL391737.2|CNS06C8G chromosome I of strain GB-M1 of Encephal... 42 0.070
gb|AC002411.1|F20D22 Arabidopsis thaliana chromosome 1 BAC F20D2... 42 0.074
gb|CP000300.1| Methanococcoides burtonii DSM 6242, complete genome 42 0.092
ref|XM_960812.1| Encephalitozoon cuniculi GB-M1 eukaryotic trans... 42 0.097
emb|AL445063.1|TACID1 Thermoplasma acidophilum complete genome; ... 41 0.13
emb|FM985958.1| Medauroidea extradentata partial mRNA for transl... 41 0.14
emb|AL161548.2|ATCHRIV48 Arabidopsis thaliana DNA chromosome 4, ... 40 0.18
emb|AL021713.1|ATT9A21 Arabidopsis thaliana DNA chromosome 4, BA... 40 0.18
gb|AC005724.3| Arabidopsis thaliana chromosome 2 clone MSF3 map ... 40 0.19
gb|EZ039195.1| TSA: Acropora millepora SeqIndex7676, mRNA sequence 40 0.19
gb|CP000609.1| Methanococcus maripaludis C5, complete genome 40 0.19
emb|AJ006823.1|ECU6823 Encephalitozoon cuniculi ef2 gene 40 0.21
emb|AL111889.1|CNS019O9 Botrytis cinerea strain T4 cDNA library 40 0.25
gb|CP000742.1| Methanococcus vannielii SB, complete genome 40 0.25
emb|AM469829.1| Vitis vinifera contig VV78X104896.13, whole geno... 40 0.30
gb|CP000867.1| Methanococcus maripaludis C6, complete genome 40 0.37
ref|XM_001446905.1| Paramecium tetraurelia hypothetical protein ... 39 0.48
emb|AM428705.2| Vitis vinifera contig VV78X262522.2, whole genom... 39 0.53
dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 39 0.63
emb|AL732376.2|CNS08C8Z Oryza sativa chromosome 12, . BAC OSJNBa... 39 0.63
ref|XM_001442208.1| Paramecium tetraurelia hypothetical protein ... 38 0.84
ref|XM_760769.1| Theileria parva strain Muguga chromosome 1 euka... 38 0.84
gb|BC031450.1| Mus musculus eukaryotic translation initiation fa... 38 1.0
dbj|AK049742.1| Mus musculus 12 days embryo spinal cord cDNA, RI... 38 1.0
gb|CP000743.1| Methanococcus aeolicus Nankai-3, complete genome 38 1.1
gb|CP000780.1| Candidatus Methanoregula boonei 6A8, complete genome 38 1.3
gb|AE000782.1| Archaeoglobus fulgidus DSM 4304, complete genome 37 2.5
gb|AE009439.1| Methanopyrus kandleri AV19, complete genome 37 2.7
gb|DQ206547.1| Leucosolenia sp. AR-2003 isolate TOA6 eukaryotic ... 37 3.0
dbj|AP006878.1| Thermococcus kodakarensis KOD1 DNA, complete genome 37 3.0
gb|CP000254.1| Methanospirillum hungatei JF-1, complete genome 37 3.1
gb|CP000866.1| Nitrosopumilus maritimus SCM1, complete genome 36 3.3
gb|AY815873.1| Schistosoma japonicum SJCHGC00533 protein mRNA, c... 36 3.9
emb|AL731881.4|CNS08C8L Oryza sativa chromosome 12, . BAC OSJNBa... 36 4.3
gb|AC159145.4| Medicago truncatula chromosome 2 BAC clone mth2-6... 36 4.4
ref|XR_012550.1| PREDICTED: Macaca mulatta similar to eukaryotic... 35 6.3
emb|AM114193.2| Uncultured methanogenic archaeon RC-I complete g... 35 7.2
ref|XM_001328484.1| Trichomonas vaginalis G3 heterochromatin pro... 35 7.9
emb|AJ715861.1| Allacma fusca eIF2g gene for eukaryotic translat... 35 8.4
ref|XM_949304.1| Theileria annulata strain Ankara eukaryotic tra... 35 9.7
>ref|XM_001562677.1| Leishmania braziliensis MHOM/BR/75/M2904 eukaryotic translation
initiation factor 2 subunit, putative (LbrM09_V2.1130)
partial mRNA
Length = 1440
Score = 232 bits (591), Expect = 4e-59, Method: Composition-based stats.
Identities = 150/166 (90%), Positives = 150/166 (90%)
Frame = -2
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGL VKRPPCSLVLRERTKPGRI
Sbjct: 1073 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGL*VKRPPCSLVLRERTKPGRI 894
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMWRRYSS 120
STTCPTLM LRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMWRRYSS
Sbjct: 893 STTCPTLMTPCVTVPPATPPLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMWRRYSS 714
Query: 121 RXSTLRFSCAEIGTIGTFNAMLSKXARTWRYUSCAFTSPTRSILFC 166
R STLRFSCAEIGTIGTFNAMLSK ARTWRY SCAFTSPTRSILFC
Sbjct: 713 R*STLRFSCAEIGTIGTFNAMLSK*ARTWRY*SCAFTSPTRSILFC 576
>emb|AM494946.1| Leishmania braziliensis chromosome 9
Length = 556710
Score = 232 bits (591), Expect = 4e-59, Method: Composition-based stats.
Identities = 150/166 (90%), Positives = 150/166 (90%)
Frame = +2
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGL VKRPPCSLVLRERTKPGRI
Sbjct: 421457 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGL*VKRPPCSLVLRERTKPGRI 421636
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMWRRYSS 120
STTCPTLM LRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMWRRYSS
Sbjct: 421637 STTCPTLMTPCVTVPPATPPLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMWRRYSS 421816
Query: 121 RXSTLRFSCAEIGTIGTFNAMLSKXARTWRYUSCAFTSPTRSILFC 166
R STLRFSCAEIGTIGTFNAMLSK ARTWRY SCAFTSPTRSILFC
Sbjct: 421817 R*STLRFSCAEIGTIGTFNAMLSK*ARTWRY*SCAFTSPTRSILFC 421954
Score = 43.1 bits (100), Expect = 0.028, Method: Composition-based stats.
Identities = 61/189 (32%), Positives = 73/189 (38%), Gaps = 24/189 (12%)
Frame = +1
Query: 2 CRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRIS 61
CRVR GS VVP AM PPG A CS+ FSA T V SG P + P + S
Sbjct: 427150 CRVREGSRVVPMAMRPPGTANCSSFFSAWSRTTVVRSGTAYSSPGGGDAT*AAS*PDKTS 427329
Query: 62 T---TCPTLMXXXXXXXXXXXXLRRSMSPS-------------------PGLLMSKERTT 99
+ P+ +P+ PG S ER T
Sbjct: 427330 DRLGSTPSRRRSTSSPGIISISSPTHRTPAATVPPTTPPWSAIALWPAGPGSDTSNERRT 427509
Query: 100 VMRTGAFSWRTGIGMWRRYSSRXSTLRFSCAEIGTIGTF--NAMLSKXARTWRYUSCAFT 157
S R G GM R SS+ TL CA+IGT G F + + Y + A
Sbjct: 427510 FKYCV*RSCRRGRGMCTR*SSKKLTLICFCAQIGTTGAFAYAVFVVR*W*MTLYCAAACA 427689
Query: 158 SPTRSILFC 166
TRSILFC
Sbjct: 427690 LLTRSILFC 427716
>ref|XM_001463533.1| Leishmania infantum JPCM5 eukaryotic translation initiation factor 2
subunit, putative (LinJ09.1130) partial mRNA
Length = 1440
Score = 205 bits (522), Expect = 4e-51, Method: Composition-based stats.
Identities = 130/155 (83%), Positives = 132/155 (85%)
Frame = -2
Query: 12 PTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRISTTCPTLMXXX 71
PTAM PPGMAYCSTLFSAL VTVRVFSGL VKRPPCSL LRERT+PGRISTTCPTLM
Sbjct: 1040 PTAMRPPGMAYCSTLFSALSVTVRVFSGL*VKRPPCSLELRERTRPGRISTTCPTLMTPC 861
Query: 72 XXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMWRRYSSRXSTLRFSCAE 131
R SMSPSPGLLMSKERTTVMRTGAFSWRTGIGMWRRYS R STLRFSCAE
Sbjct: 860 VTVPPATPPFRLSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMWRRYSRR*STLRFSCAE 681
Query: 132 IGTIGTFNAMLSKXARTWRYUSCAFTSPTRSILFC 166
IGTIGTF AMLS+ ARTWRY SCAFTSPTRSILFC
Sbjct: 680 IGTIGTFKAMLSR*ARTWRYWSCAFTSPTRSILFC 576
>emb|AM502227.1| Leishmania infantum chromosome 9
Length = 570592
Score = 205 bits (522), Expect = 4e-51, Method: Composition-based stats.
Identities = 130/155 (83%), Positives = 132/155 (85%)
Frame = +1
Query: 12 PTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRISTTCPTLMXXX 71
PTAM PPGMAYCSTLFSAL VTVRVFSGL VKRPPCSL LRERT+PGRISTTCPTLM
Sbjct: 428638 PTAMRPPGMAYCSTLFSALSVTVRVFSGL*VKRPPCSLELRERTRPGRISTTCPTLMTPC 428817
Query: 72 XXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMWRRYSSRXSTLRFSCAE 131
R SMSPSPGLLMSKERTTVMRTGAFSWRTGIGMWRRYS R STLRFSCAE
Sbjct: 428818 VTVPPATPPFRLSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMWRRYSRR*STLRFSCAE 428997
Query: 132 IGTIGTFNAMLSKXARTWRYUSCAFTSPTRSILFC 166
IGTIGTF AMLS+ ARTWRY SCAFTSPTRSILFC
Sbjct: 428998 IGTIGTFKAMLSR*ARTWRYWSCAFTSPTRSILFC 429102
Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 61/188 (32%), Positives = 76/188 (40%), Gaps = 24/188 (12%)
Frame = +2
Query: 3 RVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXV------------KRPPCSLV 50
RVR GSSVVP AM PPG A CS+ FSA T V SG RP +
Sbjct: 431336 RVRDGSSVVPIAMRPPGTANCSSFFSAWSRTTVVRSGTAYSSPGGGEAT*ANSRPDKTSA 431515
Query: 51 LRERTKPGRISTTCPTLMXXXXXXXXXXXXLRRSMSP----------SPGLLMSKERTTV 100
R T R ST+ P ++ +P PG SKER+T
Sbjct: 431516 RRGSTPSRRRSTSSPGMISISSPTHKTPAATVPPTTPPLSAFAPSPAGPGSDTSKERSTF 431695
Query: 101 MRTGAFSWRTGIGMWRRYSSRXSTLRFSCAEIGTIGTF--NAMLSKXARTWRYUSCAFTS 158
M S R G GM R SS+ CA+IG G ++++ + A +
Sbjct: 431696 MYCAWCSCRRGRGMCTR*SSKKLMFTCCCAQIGITGALA*AVLVAR*W*IMLCCAAARSL 431875
Query: 159 PTRSILFC 166
TRS LFC
Sbjct: 431876 LTRSTLFC 431899
>ref|XM_001681229.1| Leishmania major eukaryotic translation initiation factor 2 subunit,
putative (LmjF09.1070) partial mRNA
Length = 1440
Score = 201 bits (512), Expect = 5e-50, Method: Composition-based stats.
Identities = 129/155 (83%), Positives = 131/155 (84%)
Frame = -2
Query: 12 PTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRISTTCPTLMXXX 71
PTAM PPGMAYCSTLFSALRVTVRVFSGL VKR PCSL LRERT+PGRISTTCPTLM
Sbjct: 1040 PTAMRPPGMAYCSTLFSALRVTVRVFSGL*VKRLPCSLELRERTRPGRISTTCPTLMTPC 861
Query: 72 XXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMWRRYSSRXSTLRFSCAE 131
R SMSPSPGLLMS ERTTVMRTGAFSWRTGIGMWRRYS R STLRFSCAE
Sbjct: 860 VTVPPATPPFRLSMSPSPGLLMSNERTTVMRTGAFSWRTGIGMWRRYSRR*STLRFSCAE 681
Query: 132 IGTIGTFNAMLSKXARTWRYUSCAFTSPTRSILFC 166
IGTIGTF AMLS+ ARTWRY SCAFTSPTRSILFC
Sbjct: 680 IGTIGTFKAMLSR*ARTWRYWSCAFTSPTRSILFC 576
>ref|XM_799069.1| Trypanosoma cruzi strain CL Brener eukaryotic translation initiation
factor 2 subunit partial mRNA
Length = 1434
Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats.
Identities = 89/167 (53%), Positives = 101/167 (60%), Gaps = 1/167 (0%)
Frame = -2
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S RV VGSSVVPTA++PPG AYCS L SA V RV G+ +K PP T PGRI
Sbjct: 1073 SWRVNVGSSVVPTAINPPGTAYCSELSSAFSVNARVRRGVQLKVPPVCAC----TWPGRI 906
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMWRRYSS 120
S T T + R SMS SPGLLMSKERTTVM G F+ R G G+W +YS
Sbjct: 905 SRT*LTRIMPLVTVPPATPPRRFSMSTSPGLLMSKERTTVM*AGQFN*RVGRGIWHKYSK 726
Query: 121 RXSTLRFSCAEIGTIGTFNAM-LSKXARTWRYUSCAFTSPTRSILFC 166
R S LR S AE+G +G + + LS R Y SCA TSPTRSILFC
Sbjct: 725 R*SILRLS*AEMGIMGILDPIVLSM*FRIL*YWSCACTSPTRSILFC 585
>ref|XM_816660.1| Trypanosoma cruzi strain CL Brener eukaryotic translation initiation
factor 2 subunit partial mRNA
Length = 1434
Score = 115 bits (287), Expect = 6e-24, Method: Composition-based stats.
Identities = 90/167 (53%), Positives = 101/167 (60%), Gaps = 1/167 (0%)
Frame = -2
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S RV VGSSVVPTA++PPG AYCS L SA V RV G+ +K PP T PGRI
Sbjct: 1073 SWRVNVGSSVVPTAINPPGTAYCSELSSAFSVNARVRRGVQLKVPPVCAC----TWPGRI 906
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMWRRYSS 120
S T T + R SMS SPGLLMSKERTTVM G FS R G G+W +YS
Sbjct: 905 SRT*LTRIMPLVTVPPATPPRRFSMSTSPGLLMSKERTTVM*AGQFS*RVGRGIWHKYSK 726
Query: 121 RXSTLRFSCAEIGTIGTFNAM-LSKXARTWRYUSCAFTSPTRSILFC 166
R S LR S AE+G +G + + LS R Y SCA TSPTRSILFC
Sbjct: 725 R*SILRLS*AEMGMMGILDPIVLSM*FRIL*YWSCACTSPTRSILFC 585
>ref|XM_824289.1| Trypanosoma brucei TREU927 eukaryotic translation initiation factor 2
gamma (Tb11.01.4830) partial mRNA
Length = 1434
Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats.
Identities = 81/155 (52%), Positives = 95/155 (61%), Gaps = 1/155 (0%)
Frame = -2
Query: 12 PTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRISTTCPTLMXXX 71
PTA+ PPG+AYCS L SA V RV G+ + PP + T PGRIST T
Sbjct: 1040 PTAIRPPGIAYCSELSSAFNVNARVRRGVQLNVPPVCVC----TCPGRISTI*FTRRTP* 873
Query: 72 XXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMWRRYSSRXSTLRFSCAE 131
R S+S SPGLLMSKERTTV+R G S R G G+ RYSS+ STLRFSCA+
Sbjct: 872 ITVPPATPPRRVSISTSPGLLMSKERTTVIRAGQLS*RVGRGIRHRYSSK*STLRFSCAD 693
Query: 132 IGTIGTFNAM-LSKXARTWRYUSCAFTSPTRSILF 165
+G IG + M LS +R Y SCA+TSPTRSILF
Sbjct: 692 MGMIGALSPMVLSM*SRILWY*SCAWTSPTRSILF 588
>ref|XM_001999671.1| Drosophila mojavensis GI24667 (Dmoj\GI24667), mRNA
Length = 3054
Score = 78.6 bits (192), Expect = 6e-13, Method: Composition-based stats.
Identities = 74/168 (44%), Positives = 87/168 (51%), Gaps = 2/168 (1%)
Frame = -2
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R VGS +VPT + PPG AYCS+ SA T+R G V P SLV T PGR
Sbjct: 2675 SARQSVGSILVPTPIRPPGTAYCSSFCSANSETMREKIGRQVILPSLSLV----TTPGRT 2508
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIG-MWRRYS 119
S +CPTL L RS + PGLL SK+R T+ R GA R G G + YS
Sbjct: 2507 SISCPTLSTPLSMEPPATPPL-RSCTSQPGLLTSKDRITIKRGGALKSRCGTGILLTIYS 2331
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILFC 166
S L FS AEIG IG +A + Y S A+ S T+SILFC
Sbjct: 2330 QSTSMLYFSWAEIGIIGAPSATVPCTNFVISSYCSLAWLSLTKSILFC 2187
>ref|XM_002031065.1| Drosophila sechellia GM25792 (Dsec\GM25792), mRNA
Length = 3075
Score = 74.3 bits (181), Expect = 1e-11, Method: Composition-based stats.
Identities = 71/168 (42%), Positives = 84/168 (50%), Gaps = 2/168 (1%)
Frame = -2
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R VGS +VPT + PPG AYCS+ SA T+R G V P SLV T PGR
Sbjct: 2696 SARHSVGSILVPTPIRPPGTAYCSSFCSAKSETIREKIGRQVMLPSLSLV----TTPGRT 2529
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIG-MWRRYS 119
S +CPT LR + S PGL SK+R T+ R GA R G G ++ YS
Sbjct: 2528 SISCPTFSTPLRMEPPATPPLRSATS-QPGLFTSKDRMTIRRGGALKSRGGTGILFTMYS 2352
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILFC 166
S L S AEIG IG +A + Y S A+ S RSILFC
Sbjct: 2351 QSTSMLYLSWAEIGMIGAPSATVPWTNLVISSYCSFAWLSLIRSILFC 2208
>ref|XM_002053667.1| Drosophila virilis GJ24041 (Dvir\GJ24041), mRNA
Length = 3135
Score = 74.3 bits (181), Expect = 1e-11, Method: Composition-based stats.
Identities = 72/168 (42%), Positives = 85/168 (50%), Gaps = 2/168 (1%)
Frame = -2
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R VGS +VPT + PPG AYCS+ SA T+R G V P SLV T PGR
Sbjct: 2756 SARHNVGSILVPTPIKPPGTAYCSSFCSANSDTMREKMGRQVMLPSLSLV----TTPGRT 2589
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIG-MWRRYS 119
S + PTL L RS + PGL SK+R T+ R GA R G G + YS
Sbjct: 2588 SISWPTLSTPLNMEPPATPPL-RSCTSQPGLFTSKDRITMRRGGALKSRCGTGILLTMYS 2412
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILFC 166
S L FS AEIG IG +A + Y S A+ S T+SILFC
Sbjct: 2411 QSTSMLYFSWAEIGIIGAPSATVPCTNFVISSYCSFAWLSLTKSILFC 2268
>ref|XM_001989494.1| Drosophila grimshawi GH18750 (Dgri\GH18750), mRNA
Length = 3108
Score = 74.3 bits (181), Expect = 1e-11, Method: Composition-based stats.
Identities = 72/168 (42%), Positives = 84/168 (50%), Gaps = 2/168 (1%)
Frame = -2
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R VGS +VPT + PPG AYCS+ SA T+R G V P SLV T PGR
Sbjct: 2729 SARQSVGSILVPTPIKPPGTAYCSSFCSANSETMREKMGRQVMLPSLSLV----TTPGRT 2562
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIG-MWRRYS 119
S + PTL L RS + PGL SK+R T+ R G R G G + YS
Sbjct: 2561 SIS*PTLSTPLNMEPPATPPL-RSCTSQPGLFTSKDRMTIKRGGVLKSRCGTGILLTMYS 2385
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILFC 166
S L FSCAEIG IG +A + Y S A S T+SILFC
Sbjct: 2384 QSTSMLYFSCAEIGIIGAPSATVPCTNFVISSYCSLA*LSLTKSILFC 2241
>gb|AE014297.2| Drosophila melanogaster chromosome 3R, complete sequence
Length = 27905053
Score = 73.6 bits (179), Expect = 2e-11, Method: Composition-based stats.
Identities = 70/168 (41%), Positives = 83/168 (49%), Gaps = 2/168 (1%)
Frame = +3
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R VGS +VPT + PPG AYCS+ SA T+R G V P SLV T PGR
Sbjct: 11084535 SARHSVGSILVPTPIRPPGTAYCSSFCSAKSETIREKIGRQVMLPSLSLV----TTPGRT 11084702
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIG-MWRRYS 119
S + PT LR + S PGL SK+R T+ R GA R G G ++ YS
Sbjct: 11084703 SISWPTFSTPLRMEPPATPPLRSATS-QPGLFTSKDRMTIRRGGALKSRGGTGILFTMYS 11084879
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILFC 166
S L S AEIG IG +A + Y S A+ S RSILFC
Sbjct: 11084880 QSTSMLYLSWAEIGMIGAPSATVPWTNLVISSYCSFAWLSLIRSILFC 11085023
>gb|AC009904.7| Drosophila melanogaster, chromosome 3R, region 88E-88E, BAC clone
BACR32A03, complete sequence
Length = 182601
Score = 73.6 bits (179), Expect = 2e-11, Method: Composition-based stats.
Identities = 70/168 (41%), Positives = 83/168 (49%), Gaps = 2/168 (1%)
Frame = +2
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R VGS +VPT + PPG AYCS+ SA T+R G V P SLV T PGR
Sbjct: 168836 SARHSVGSILVPTPIRPPGTAYCSSFCSAKSETIREKIGRQVMLPSLSLV----TTPGRT 169003
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIG-MWRRYS 119
S + PT LR + S PGL SK+R T+ R GA R G G ++ YS
Sbjct: 169004 SISWPTFSTPLRMEPPATPPLRSATS-QPGLFTSKDRMTIRRGGALKSRGGTGILFTMYS 169180
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILFC 166
S L S AEIG IG +A + Y S A+ S RSILFC
Sbjct: 169181 QSTSMLYLSWAEIGMIGAPSATVPWTNLVISSYCSFAWLSLIRSILFC 169324
>emb|AJ290956.2|DME290956 Drosophila melanogaster eIF2g gene for eukaryotic translation
initiation factor 2 gamma subunit and Su(var)3-9 gene for
histone-lysine N-methyltransferase, H3 lysine-9 specific
Length = 11411
Score = 73.6 bits (179), Expect = 2e-11, Method: Composition-based stats.
Identities = 70/168 (41%), Positives = 83/168 (49%), Gaps = 2/168 (1%)
Frame = -3
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R VGS +VPT + PPG AYCS+ SA T+R G V P SLV T PGR
Sbjct: 7923 SARHSVGSILVPTPIRPPGTAYCSSFCSAKSETIREKIGRQVMLPSLSLV----TTPGRT 7756
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIG-MWRRYS 119
S + PT LR + S PGL SK+R T+ R GA R G G ++ YS
Sbjct: 7755 SISWPTFSTPLRMEPPATPPLRSATS-QPGLFTSKDRMTIRRGGALKSRGGTGILFTMYS 7579
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILFC 166
S L S AEIG IG +A + Y S A+ S RSILFC
Sbjct: 7578 QSTSMLYLSWAEIGMIGAPSATVPWTNLVISSYCSFAWLSLIRSILFC 7435
>gb|AC007648.6|AC007648 Drosophila melanogaster, chromosome 3R, region 88E-88F, BAC clone
BACR13A02, complete sequence
Length = 166141
Score = 73.6 bits (179), Expect = 2e-11, Method: Composition-based stats.
Identities = 70/168 (41%), Positives = 83/168 (49%), Gaps = 2/168 (1%)
Frame = +2
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R VGS +VPT + PPG AYCS+ SA T+R G V P SLV T PGR
Sbjct: 17870 SARHSVGSILVPTPIRPPGTAYCSSFCSAKSETIREKIGRQVMLPSLSLV----TTPGRT 18037
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIG-MWRRYS 119
S + PT LR + S PGL SK+R T+ R GA R G G ++ YS
Sbjct: 18038 SISWPTFSTPLRMEPPATPPLRSATS-QPGLFTSKDRMTIRRGGALKSRGGTGILFTMYS 18214
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILFC 166
S L S AEIG IG +A + Y S A+ S RSILFC
Sbjct: 18215 QSTSMLYLSWAEIGMIGAPSATVPWTNLVISSYCSFAWLSLIRSILFC 18358
>gb|FJ668116.1| Daphnia parvula strain A60 eukaryotic translation initiation factor 2
gamma subunit (eIF2gamma) mRNA, partial cds
Length = 1233
Score = 73.6 bits (179), Expect = 2e-11, Method: Composition-based stats.
Identities = 70/167 (41%), Positives = 86/167 (51%), Gaps = 2/167 (1%)
Frame = -2
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R++VGS +VPT + PPG AY S+ SA + T+R GL V P SL T PGR
Sbjct: 1007 SARLKVGSIMVPTPIKPPGTAYISSFCSAYKETIREKMGLHVSFPSESL----DTNPGRT 840
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIG-MWRRYS 119
S +CPTL LR S S PGLL S ER + R A R G+G + YS
Sbjct: 839 SISCPTLRTPFKILPPATPPLRSSTS-QPGLLTSNERIIINRGSAVKSRNGMGILLTTYS 663
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILF 165
S L FS AEIG G +A + + Y S A+ S T+SILF
Sbjct: 662 QITSMLYFS*AEIGITGAPSATVP*TNFKICSY*SLAWLSFTKSILF 522
>gb|FJ668167.1| Daphnia pulex strain MAR eukaryotic translation initiation factor 2
gamma subunit (eIF2gamma) mRNA, partial cds
Length = 1233
Score = 73.2 bits (178), Expect = 3e-11, Method: Composition-based stats.
Identities = 71/167 (42%), Positives = 85/167 (50%), Gaps = 2/167 (1%)
Frame = -2
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R++VGS +VPT + PPG AY S+ SA + T+R GL V P SL T PGR
Sbjct: 1007 SARLKVGSIIVPTPIKPPGTAYISSFCSAYKETIREKMGLHVSFPSESL----DTNPGRT 840
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIG-MWRRYS 119
S +CPTL LR S S PGLL S ER + R A R GIG + YS
Sbjct: 839 SISCPTLRTPFKILPPATPPLRSSTS-QPGLLTSNERIIINRGSAVKSRNGIGILLTTYS 663
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILF 165
S L FS AEIG G +A + + Y S A S T+SILF
Sbjct: 662 QITSMLYFS*AEIGITGAPSATVP*TNFKICSY*SLA*LSFTKSILF 522
>emb|AJ719311.1| Gallus gallus mRNA for hypothetical protein, clone 1f8
Length = 1628
Score = 72.8 bits (177), Expect = 3e-11, Method: Composition-based stats.
Identities = 71/168 (42%), Positives = 86/168 (51%), Gaps = 2/168 (1%)
Frame = -2
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R +VGS +VPT +SPPG AYC +L SA T+ GL + P SL T PGR
Sbjct: 1066 SARHKVGSILVPTPISPPGAAYCKSLCSAKSDTILEKIGLHMSFPSLSL----DTIPGRT 899
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMWRR-YS 119
S + PT LR S S PGLL SK+ T+ R G G++ YS
Sbjct: 898 SIS*PTFKTPFRILPPATPPLRSSTS-QPGLLTSKDLITISLGSDVKSRKGTGIFFTIYS 722
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILFC 166
S L FSCAEIG IG +A + AR Y S A+ S T+SILFC
Sbjct: 721 QTTSMLYFSCAEIGIIGAPSATVPCTNARICSYCSLAWLSFTKSILFC 578
>emb|CR352843.1| Gallus gallus finished cDNA, clone ChEST124o3
Length = 1779
Score = 72.8 bits (177), Expect = 3e-11, Method: Composition-based stats.
Identities = 71/168 (42%), Positives = 86/168 (51%), Gaps = 2/168 (1%)
Frame = -3
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R +VGS +VPT +SPPG AYC +L SA T+ GL + P SL T PGR
Sbjct: 1036 SARHKVGSILVPTPISPPGAAYCKSLCSAKSDTILEKIGLHMSFPSLSL----DTIPGRT 869
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMWRR-YS 119
S + PT LR S S PGLL SK+ T+ R G G++ YS
Sbjct: 868 SIS*PTFKTPFRILPPATPPLRSSTS-QPGLLTSKDLITISLGSDVKSRKGTGIFFTIYS 692
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILFC 166
S L FSCAEIG IG +A + AR Y S A+ S T+SILFC
Sbjct: 691 QTTSMLYFSCAEIGIIGAPSATVPCTNARICSYCSLAWLSFTKSILFC 548
>emb|CR353527.1| Gallus gallus finished cDNA, clone ChEST133m17
Length = 1539
Score = 72.8 bits (177), Expect = 3e-11, Method: Composition-based stats.
Identities = 71/168 (42%), Positives = 86/168 (51%), Gaps = 2/168 (1%)
Frame = -2
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R +VGS +VPT +SPPG AYC +L SA T+ GL + P SL T PGR
Sbjct: 986 SARHKVGSILVPTPISPPGAAYCKSLCSAKSDTILEKIGLHMSFPSLSL----DTIPGRT 819
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMWRR-YS 119
S + PT LR S S PGLL SK+ T+ R G G++ YS
Sbjct: 818 SIS*PTFKTPFRILPPATPPLRSSTS-QPGLLTSKDLITISLGSDVKSRKGTGIFFTIYS 642
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILFC 166
S L FSCAEIG IG +A + AR Y S A+ S T+SILFC
Sbjct: 641 QTTSMLYFSCAEIGIIGAPSATVPCTNARICSYCSLAWLSFTKSILFC 498
>gb|FJ668168.1| Daphnia pulex strain PA32 eukaryotic translation initiation factor 2
gamma subunit (eIF2gamma) mRNA, partial cds
Length = 1233
Score = 72.4 bits (176), Expect = 5e-11, Method: Composition-based stats.
Identities = 70/167 (41%), Positives = 85/167 (50%), Gaps = 2/167 (1%)
Frame = -2
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R++VGS +VPT + PPG AY S+ SA + T+R GL V P SL T PGR
Sbjct: 1007 SARLKVGSIIVPTPIKPPGTAYISSFCSAYKETIREKMGLHVSFPSESL----DTNPGRT 840
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIG-MWRRYS 119
S +CPTL LR S S PGLL S ER + R A R G+G + YS
Sbjct: 839 SISCPTLRTPFKILPPATPPLRSSTS-QPGLLTSNERIIINRGSAVKSRNGMGILLTTYS 663
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILF 165
S L FS AEIG G +A + + Y S A S T+SILF
Sbjct: 662 QITSXLYFS*AEIGITGAPSATVP*TNFKICSY*SLA*LSFTKSILF 522
>gb|FJ668165.1| Daphnia pulex strain FAT eukaryotic translation initiation factor 2
gamma subunit (eIF2gamma) mRNA, partial cds
Length = 1233
Score = 72.0 bits (175), Expect = 6e-11, Method: Composition-based stats.
Identities = 70/167 (41%), Positives = 85/167 (50%), Gaps = 2/167 (1%)
Frame = -2
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R++VGS +VPT + PPG AY S+ SA + T+R GL V P SL T PGR
Sbjct: 1007 SARLKVGSIIVPTPIKPPGTAYISSFCSAYKETIREKMGLHVSFPSESL----DTNPGRT 840
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIG-MWRRYS 119
S +CPTL LR S S PGLL S ER + R A R G+G + YS
Sbjct: 839 SISCPTLRTPFKILPPATPPLRSSTS-QPGLLTSNERIIINRGSAVKSRNGMGILLTTYS 663
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILF 165
S L FS AEIG G +A + + Y S A S T+SILF
Sbjct: 662 QITSMLYFS*AEIGITGAPSATVP*TNFKICSY*SLA*LSFTKSILF 522
>gb|FJ668164.1| Daphnia pulex strain EB1 eukaryotic translation initiation factor 2
gamma subunit (eIF2gamma) mRNA, partial cds
Length = 1233
Score = 72.0 bits (175), Expect = 6e-11, Method: Composition-based stats.
Identities = 70/167 (41%), Positives = 85/167 (50%), Gaps = 2/167 (1%)
Frame = -2
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R++VGS +VPT + PPG AY S+ SA + T+R GL V P SL T PGR
Sbjct: 1007 SARLKVGSIIVPTPIKPPGTAYISSFCSAYKETIREKMGLHVSFPSESL----DTNPGRT 840
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIG-MWRRYS 119
S +CPTL LR S S PGLL S ER + R A R G+G + YS
Sbjct: 839 SISCPTLRTPFKILPPATPPLRSSTS-QPGLLTSNERIIINRGSAVKSRNGMGILLTTYS 663
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILF 165
S L FS AEIG G +A + + Y S A S T+SILF
Sbjct: 662 QITSMLYFS*AEIGITGAPSATVP*TNFKICSY*SLA*LSFTKSILF 522
>gb|FJ668163.1| Daphnia pulex strain DISP14 eukaryotic translation initiation factor
2 gamma subunit (eIF2gamma) mRNA, partial cds
Length = 1233
Score = 72.0 bits (175), Expect = 6e-11, Method: Composition-based stats.
Identities = 70/167 (41%), Positives = 85/167 (50%), Gaps = 2/167 (1%)
Frame = -2
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R++VGS +VPT + PPG AY S+ SA + T+R GL V P SL T PGR
Sbjct: 1007 SARLKVGSIIVPTPIKPPGTAYISSFCSAYKETIREKMGLHVSFPSESL----DTNPGRT 840
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIG-MWRRYS 119
S +CPTL LR S S PGLL S ER + R A R G+G + YS
Sbjct: 839 SISCPTLRTPFKILPPATPPLRSSTS-QPGLLTSNERIIINRGSAVKSRNGMGILLTTYS 663
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILF 165
S L FS AEIG G +A + + Y S A S T+SILF
Sbjct: 662 QITSMLYFS*AEIGITGAPSATVP*TNFKICSY*SLA*LSFTKSILF 522
>gb|FJ668162.1| Daphnia pulex strain CC1 eukaryotic translation initiation factor 2
gamma subunit (eIF2gamma) mRNA, partial cds
Length = 1233
Score = 72.0 bits (175), Expect = 6e-11, Method: Composition-based stats.
Identities = 70/167 (41%), Positives = 85/167 (50%), Gaps = 2/167 (1%)
Frame = -2
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R++VGS +VPT + PPG AY S+ SA + T+R GL V P SL T PGR
Sbjct: 1007 SARLKVGSIIVPTPIKPPGTAYISSFCSAYKETIREKMGLHVSFPSESL----DTNPGRT 840
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIG-MWRRYS 119
S +CPTL LR S S PGLL S ER + R A R G+G + YS
Sbjct: 839 SISCPTLRTPFKILPPATPPLRSSTS-QPGLLTSNERIIINRGSAVKSRNGMGILLTTYS 663
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILF 165
S L FS AEIG G +A + + Y S A S T+SILF
Sbjct: 662 QITSMLYFS*AEIGITGAPSATVP*TNFKICSY*SLA*LSFTKSILF 522
>gb|FJ668161.1| Daphnia pulex strain BW102 eukaryotic translation initiation factor 2
gamma subunit (eIF2gamma) mRNA, partial cds
Length = 1233
Score = 72.0 bits (175), Expect = 6e-11, Method: Composition-based stats.
Identities = 70/167 (41%), Positives = 85/167 (50%), Gaps = 2/167 (1%)
Frame = -2
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R++VGS +VPT + PPG AY S+ SA + T+R GL V P SL T PGR
Sbjct: 1007 SARLKVGSIIVPTPIKPPGTAYISSFCSAYKETIREKMGLHVSFPSESL----DTNPGRT 840
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIG-MWRRYS 119
S +CPTL LR S S PGLL S ER + R A R G+G + YS
Sbjct: 839 SISCPTLRTPFKILPPATPPLRSSTS-QPGLLTSNERIIINRGSAVKSRNGMGILLTTYS 663
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILF 165
S L FS AEIG G +A + + Y S A S T+SILF
Sbjct: 662 QITSMLYFS*AEIGITGAPSATVP*TNFKICSY*SLA*LSFTKSILF 522
>ref|XM_002097739.1| Drosophila yakuba GE26397 (Dyak\GE26397), mRNA
Length = 3081
Score = 72.0 bits (175), Expect = 6e-11, Method: Composition-based stats.
Identities = 71/168 (42%), Positives = 84/168 (50%), Gaps = 2/168 (1%)
Frame = -2
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R VGS +VPT + PPG AYCS+ SA T+R G V P SLV T PGR
Sbjct: 2702 SARHSVGSILVPTPIRPPGTAYCSSFCSAKSETIREKIGRQVMLPSLSLV----TTPGRT 2535
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIG-MWRRYS 119
S + PTL R + S PGLL SK+R T+ R GA R G G ++ YS
Sbjct: 2534 SISWPTLSTPLRMEPPATPPFRSATS-QPGLLTSKDRMTIRRGGALKSRGGTGILFTMYS 2358
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILFC 166
S L S AEIG IG +A + Y S A+ S RSILFC
Sbjct: 2357 QSTSMLYLSWAEIGMIGAPSATVPWTNLVISSYCSFAWLSLIRSILFC 2214
>emb|CR723674.2|CNS0GLC0 Tetraodon nigroviridis full-length cDNA
Length = 1683
Score = 71.6 bits (174), Expect = 8e-11, Method: Composition-based stats.
Identities = 65/166 (39%), Positives = 79/166 (47%), Gaps = 2/166 (1%)
Frame = -1
Query: 3 RVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRIST 62
R VGS +VPT + PPG AYC +L SA T+ GL + P SL T PGR S
Sbjct: 1053 RQSVGSILVPTPIRPPGAAYCRSLCSANNETILEKMGLHISFPSWSL----ETIPGRTSI 886
Query: 63 TCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMW-RRYSSR 121
+ PTL R S S PGL SK+ T+ R G G++ YS
Sbjct: 885 SWPTLRTPFRILPPATPPFRSSTS-HPGLFTSKDLITMSRGSDVKSLMGTGIFLTMYSQT 709
Query: 122 XSTLRFSCAEIGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILFC 166
S L S AE+G +G +A + AR Y S A S TRSILFC
Sbjct: 708 TSMLYLSWAEMGMMGAPSATVPCTKARICSYCSLA*LSFTRSILFC 571
>emb|AJ715857.1| Lithobius forficatus mRNA for eukaryotic translation initiation
factor 2 gamma subunit (eIF2g gene)
Length = 1552
Score = 71.6 bits (174), Expect = 9e-11, Method: Composition-based stats.
Identities = 69/167 (41%), Positives = 83/167 (49%), Gaps = 2/167 (1%)
Frame = -1
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R VGS VPT ++PPG A C + SA R T+R GL V P S T PGR
Sbjct: 1078 SARHSVGSIFVPTPINPPGTANCKSFCSAHRETIREKMGLHVNFPSWSF----DTIPGRT 911
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMWR-RYS 119
S +CPTL LR S S PGL SKER T+ R GIG++ YS
Sbjct: 910 SISCPTLRTPLKILPPATPPLRSSTS-QPGLFTSKERITINLGSDEKSREGIGIFLVMYS 734
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILF 165
S L FSCA+IG G +A + + Y S A+ S T+SILF
Sbjct: 733 QITSMLCFSCADIGITGAPSATVP*TNFKICSYCSFAWLSFTKSILF 593
>gb|FJ638127.1| Synthetic construct Drosophila melanogaster clone BS16354 encodes
Su(var)3-9-RC
Length = 1436
Score = 71.2 bits (173), Expect = 9e-11, Method: Composition-based stats.
Identities = 70/168 (41%), Positives = 83/168 (49%), Gaps = 2/168 (1%)
Frame = -3
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R VGS +VPT + PPG AYCS+ SA T+R G V P SLV T PGR
Sbjct: 1041 SARHSVGSILVPTPIRPPGTAYCSSFCSAKSETIREKIGRQVMLPSLSLV----TTPGRT 874
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIG-MWRRYS 119
S + PT L RS + PGL SK+R T+ R GA R G G ++ YS
Sbjct: 873 SISWPTFSTPLRMEPPATPPL-RSATSQPGLFTSKDRMTIRRGGALKSRGGTGILFTMYS 697
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILFC 166
S L S AEIG IG +A + Y S A+ S RSILFC
Sbjct: 696 QSTSMLYLSWAEIGMIGAPSATVPWTNLVISSYCSFAWLSLIRSILFC 553
>gb|FJ635033.1| Synthetic construct Drosophila melanogaster clone BS05008 encodes
Su(var)3-9-RB
Length = 1460
Score = 71.2 bits (173), Expect = 9e-11, Method: Composition-based stats.
Identities = 70/168 (41%), Positives = 83/168 (49%), Gaps = 2/168 (1%)
Frame = -3
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R VGS +VPT + PPG AYCS+ SA T+R G V P SLV T PGR
Sbjct: 1065 SARHSVGSILVPTPIRPPGTAYCSSFCSAKSETIREKIGRQVMLPSLSLV----TTPGRT 898
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIG-MWRRYS 119
S + PT L RS + PGL SK+R T+ R GA R G G ++ YS
Sbjct: 897 SISWPTFSTPLRMEPPATPPL-RSATSQPGLFTSKDRMTIRRGGALKSRGGTGILFTMYS 721
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILFC 166
S L S AEIG IG +A + Y S A+ S RSILFC
Sbjct: 720 QSTSMLYLSWAEIGMIGAPSATVPWTNLVISSYCSFAWLSLIRSILFC 577
>gb|FJ633858.1| Synthetic construct Drosophila melanogaster clone BO16554 encodes
Su(var)3-9-RC
Length = 1435
Score = 71.2 bits (173), Expect = 9e-11, Method: Composition-based stats.
Identities = 70/168 (41%), Positives = 83/168 (49%), Gaps = 2/168 (1%)
Frame = -2
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R VGS +VPT + PPG AYCS+ SA T+R G V P SLV T PGR
Sbjct: 1041 SARHSVGSILVPTPIRPPGTAYCSSFCSAKSETIREKIGRQVMLPSLSLV----TTPGRT 874
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIG-MWRRYS 119
S + PT L RS + PGL SK+R T+ R GA R G G ++ YS
Sbjct: 873 SISWPTFSTPLRMEPPATPPL-RSATSQPGLFTSKDRMTIRRGGALKSRGGTGILFTMYS 697
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILFC 166
S L S AEIG IG +A + Y S A+ S RSILFC
Sbjct: 696 QSTSMLYLSWAEIGMIGAPSATVPWTNLVISSYCSFAWLSLIRSILFC 553
>gb|FJ630018.1| Synthetic construct Drosophila melanogaster clone BO05408 encodes
Su(var)3-9-RB
Length = 1459
Score = 71.2 bits (173), Expect = 9e-11, Method: Composition-based stats.
Identities = 70/168 (41%), Positives = 83/168 (49%), Gaps = 2/168 (1%)
Frame = -2
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R VGS +VPT + PPG AYCS+ SA T+R G V P SLV T PGR
Sbjct: 1065 SARHSVGSILVPTPIRPPGTAYCSSFCSAKSETIREKIGRQVMLPSLSLV----TTPGRT 898
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIG-MWRRYS 119
S + PT L RS + PGL SK+R T+ R GA R G G ++ YS
Sbjct: 897 SISWPTFSTPLRMEPPATPPL-RSATSQPGLFTSKDRMTIRRGGALKSRGGTGILFTMYS 721
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILFC 166
S L S AEIG IG +A + Y S A+ S RSILFC
Sbjct: 720 QSTSMLYLSWAEIGMIGAPSATVPWTNLVISSYCSFAWLSLIRSILFC 577
>ref|XM_002103317.1| Drosophila simulans GD20368 (Dsim\GD20368), mRNA
Length = 3075
Score = 71.2 bits (173), Expect = 9e-11, Method: Composition-based stats.
Identities = 70/168 (41%), Positives = 83/168 (49%), Gaps = 2/168 (1%)
Frame = -2
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R VGS +VPT + PPG AYCS+ SA T+R G V P SLV T PGR
Sbjct: 2696 SARHSVGSILVPTPIRPPGTAYCSSFCSAKSETIREKIGRQVMLPSLSLV----TTPGRT 2529
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIG-MWRRYS 119
S + PT L RS + PGL SK+R T+ R GA R G G ++ YS
Sbjct: 2528 SISWPTFSTPLRMEPPATPPL-RSATSQPGLFTSKDRMTIRRGGALKSRGGTGILFTMYS 2352
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILFC 166
S L S AEIG IG +A + Y S A+ S RSILFC
Sbjct: 2351 QSTSMLYLSWAEIGMIGAPSATVPWTNLVISSYCSFAWLSLIRSILFC 2208
>gb|BT012446.1| Drosophila melanogaster RE71279 full insert cDNA
Length = 1900
Score = 71.2 bits (173), Expect = 9e-11, Method: Composition-based stats.
Identities = 70/168 (41%), Positives = 83/168 (49%), Gaps = 2/168 (1%)
Frame = -3
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R VGS +VPT + PPG AYCS+ SA T+R G V P SLV T PGR
Sbjct: 1124 SARHSVGSILVPTPIRPPGTAYCSSFCSAKSETIREKIGRQVMLPSLSLV----TTPGRT 957
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIG-MWRRYS 119
S + PT L RS + PGL SK+R T+ R GA R G G ++ YS
Sbjct: 956 SISWPTFSTPLRMEPPATPPL-RSATSQPGLFTSKDRMTIRRGGALKSRGGTGILFTMYS 780
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILFC 166
S L S AEIG IG +A + Y S A+ S RSILFC
Sbjct: 779 QSTSMLYLSWAEIGMIGAPSATVPWTNLVISSYCSFAWLSLIRSILFC 636
>ref|NM_169630.1| Drosophila melanogaster suppressor of variegation 3-9 (Su(var)3-9),
transcript variant C, mRNA
Length = 1936
Score = 71.2 bits (173), Expect = 9e-11, Method: Composition-based stats.
Identities = 70/168 (41%), Positives = 83/168 (49%), Gaps = 2/168 (1%)
Frame = -3
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R VGS +VPT + PPG AYCS+ SA T+R G V P SLV T PGR
Sbjct: 1124 SARHSVGSILVPTPIRPPGTAYCSSFCSAKSETIREKIGRQVMLPSLSLV----TTPGRT 957
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIG-MWRRYS 119
S + PT L RS + PGL SK+R T+ R GA R G G ++ YS
Sbjct: 956 SISWPTFSTPLRMEPPATPPL-RSATSQPGLFTSKDRMTIRRGGALKSRGGTGILFTMYS 780
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILFC 166
S L S AEIG IG +A + Y S A+ S RSILFC
Sbjct: 779 QSTSMLYLSWAEIGMIGAPSATVPWTNLVISSYCSFAWLSLIRSILFC 636
>ref|NM_169629.1| Drosophila melanogaster suppressor of variegation 3-9 (Su(var)3-9),
transcript variant B, mRNA
Length = 1988
Score = 71.2 bits (173), Expect = 9e-11, Method: Composition-based stats.
Identities = 70/168 (41%), Positives = 83/168 (49%), Gaps = 2/168 (1%)
Frame = -3
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R VGS +VPT + PPG AYCS+ SA T+R G V P SLV T PGR
Sbjct: 1176 SARHSVGSILVPTPIRPPGTAYCSSFCSAKSETIREKIGRQVMLPSLSLV----TTPGRT 1009
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIG-MWRRYS 119
S + PT L RS + PGL SK+R T+ R GA R G G ++ YS
Sbjct: 1008 SISWPTFSTPLRMEPPATPPL-RSATSQPGLFTSKDRMTIRRGGALKSRGGTGILFTMYS 832
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILFC 166
S L S AEIG IG +A + Y S A+ S RSILFC
Sbjct: 831 QSTSMLYLSWAEIGMIGAPSATVPWTNLVISSYCSFAWLSLIRSILFC 688
>gb|AY061102.1| Drosophila melanogaster LD09025 full length cDNA
Length = 1898
Score = 71.2 bits (173), Expect = 9e-11, Method: Composition-based stats.
Identities = 70/168 (41%), Positives = 83/168 (49%), Gaps = 2/168 (1%)
Frame = -1
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R VGS +VPT + PPG AYCS+ SA T+R G V P SLV T PGR
Sbjct: 1118 SARHSVGSILVPTPIRPPGTAYCSSFCSAKSETIREKIGRQVMLPSLSLV----TTPGRT 951
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIG-MWRRYS 119
S + PT L RS + PGL SK+R T+ R GA R G G ++ YS
Sbjct: 950 SISWPTFSTPLRMEPPATPPL-RSATSQPGLFTSKDRMTIRRGGALKSRGGTGILFTMYS 774
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILFC 166
S L S AEIG IG +A + Y S A+ S RSILFC
Sbjct: 773 QSTSMLYLSWAEIGMIGAPSATVPWTNLVISSYCSFAWLSLIRSILFC 630
>emb|X80069.1|DM51KDAP D.melanogaster mRNA for 51 kDa protein
Length = 1967
Score = 71.2 bits (173), Expect = 9e-11, Method: Composition-based stats.
Identities = 70/168 (41%), Positives = 83/168 (49%), Gaps = 2/168 (1%)
Frame = -2
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R VGS +VPT + PPG AYCS+ SA T+R G V P SLV T PGR
Sbjct: 1138 SARHSVGSILVPTPIRPPGTAYCSSFCSAKSETIREKIGRQVMLPSLSLV----TTPGRT 971
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIG-MWRRYS 119
S + PT L RS + PGL SK+R T+ R GA R G G ++ YS
Sbjct: 970 SISWPTFSTPLRMEPPATPPL-RSATSQPGLFTSKDRMTIRRGGALKSRGGTGILFTMYS 794
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILFC 166
S L S AEIG IG +A + Y S A+ S RSILFC
Sbjct: 793 QSTSMLYLSWAEIGMIGAPSATVPWTNLVISSYCSFAWLSLIRSILFC 650
>gb|FJ668166.1| Daphnia pulex strain LP8 eukaryotic translation initiation factor 2
gamma subunit (eIF2gamma) mRNA, partial cds
Length = 1233
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 70/167 (41%), Positives = 84/167 (50%), Gaps = 2/167 (1%)
Frame = -2
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R++VGS +VPT + PPG AY S+ SA + T+R GL V P SL T PGR
Sbjct: 1007 SARLKVGSIIVPTPIKPPGTAYISSFCSAYKETIREKMGLHVSFPSESL----DTNPGRT 840
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIG-MWRRYS 119
S +CPTL LR S S PGLL S ER + R A R G G + YS
Sbjct: 839 SISCPTLRTPFKILPPATPPLRSSTS-QPGLLTSNERIIINRGSAVKSRNGXGILLTTYS 663
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILF 165
S L FS AEIG G +A + + Y S A S T+SILF
Sbjct: 662 QITSMLYFS*AEIGITGAPSATVP*TNFKICSY*SLA*LSFTKSILF 522
>ref|XM_001979984.1| Drosophila erecta eukaryotic translation initiation factor 2 gamma
(Dere\eIF2gamma), mRNA
Length = 1428
Score = 70.9 bits (172), Expect = 1e-10, Method: Composition-based stats.
Identities = 70/168 (41%), Positives = 83/168 (49%), Gaps = 2/168 (1%)
Frame = -2
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R VGS +VPT + PPG AYCS+ SA T+R G V P SLV T PGR
Sbjct: 1049 SARHSVGSILVPTPIRPPGTAYCSSFCSAKSETIREKIGRQVMLPSLSLV----TTPGRT 882
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIG-MWRRYS 119
S + PTL R + S PGL SK+R T+ R GA R G G ++ YS
Sbjct: 881 SIS*PTLRTPLRMEPPATPPFRSATS-QPGLFTSKDRMTIKRGGALKSRGGTGILFTMYS 705
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILFC 166
S L S AEIG IG +A + Y S A+ S RSILFC
Sbjct: 704 QSTSMLYLSWAEIGMIGAPSATVPWTNLVISSYCSFAWLSLIRSILFC 561
>ref|XM_001699982.1| Chlamydomonas reinhardtii strain CC-503 cw92 mt+
Length = 1514
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 72/170 (42%), Positives = 88/170 (51%), Gaps = 4/170 (2%)
Frame = -2
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S RV VGS+V PT M PPG A CS+ SA T+R G+ + RP SLV+ PGR
Sbjct: 1150 SARVSVGSTVRPTPMRPPGTANCSSFCSAKSDTMREKMGMHLTRPSASLVM----MPGRT 983
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMW-RRYS 119
S + P L S S PGLL SKER T++ G RTG G++ RYS
Sbjct: 982 SISWPIFSTPCRMDPPATPPLSSSTS-EPGLLTSKERITIIWGGDTKSRTGTGIFLTRYS 806
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLSKXARTWRYUSC---AFTSPTRSILFC 166
STL SCAE+GT G +A++ + SC A S RSILFC
Sbjct: 805 HTTSTLYLSCAEMGTTGAPSAIVP--WMNFLMASCWLMALGSVIRSILFC 662
>ref|XM_002195589.1| PREDICTED: Taeniopygia guttata eukaryotic translation initiation
factor 2, subunit 3 gamma, 52kDa (LOC100220349), mRNA
Length = 2147
Score = 69.7 bits (169), Expect = 3e-10, Method: Composition-based stats.
Identities = 69/168 (41%), Positives = 84/168 (50%), Gaps = 2/168 (1%)
Frame = -3
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R +VGS +VPT + PPG AYC +L SA T+ GL + P SL T PG
Sbjct: 1053 SARHKVGSILVPTPIRPPGAAYCRSLCSAKSDTILEKIGLHMSLPSLSL----ETIPGLT 886
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGM-WRRYS 119
S + PT LR S S PGLL SK+ T+ R G G+ + YS
Sbjct: 885 SISWPTFKTPFRILPPATPPLRSSTS-QPGLLTSKDLITMSLGSDVKSRKGTGIFFTMYS 709
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILFC 166
S L FSCAEIG IG +A + AR Y S A+ S T+SILFC
Sbjct: 708 QTTSMLYFSCAEIGIIGAPSATVPCTNARICSYCSLAWLSFTKSILFC 565
>gb|BC043966.1| Xenopus laevis eukaryotic translation initiation factor 2, subunit 3,
structural gene X-linked, mRNA (cDNA clone MGC:53362
IMAGE:5571125), complete cds
Length = 1748
Score = 69.3 bits (168), Expect = 4e-10, Method: Composition-based stats.
Identities = 69/168 (41%), Positives = 84/168 (50%), Gaps = 2/168 (1%)
Frame = -2
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R +VGS +VPT + PPG AYC +L SA + T+ GL + P S T PGR
Sbjct: 1063 SARHKVGSILVPTPIRPPGAAYCRSLCSANKDTILEKIGLHMSFPSLSF----ETIPGRT 896
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMW-RRYS 119
S +CPT LR S S PGLL SK+ T+ R G G++ YS
Sbjct: 895 SISCPTFNTPLRILPPATPPLRSSTS-HPGLLTSKDLITMSLGSEMKSRGGTGIFLTMYS 719
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILFC 166
S L FS AEIG IG +A + AR Y S A S T+SILFC
Sbjct: 718 QTTSILYFS*AEIGMIGAPSATVPCTNARICSYCSLA*LSLTKSILFC 575
>ref|XM_002227901.1| Branchiostoma floridae hypothetical protein (BRAFLDRAFT_125918) mRNA,
complete cds
Length = 2042
Score = 68.9 bits (167), Expect = 5e-10, Method: Composition-based stats.
Identities = 68/168 (40%), Positives = 84/168 (50%), Gaps = 2/168 (1%)
Frame = -1
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R VGS +VPT + PPG A C + SA R T+ GL + P SL T PGR
Sbjct: 1070 SARHSVGSILVPTPIRPPGTANCRSFCSANRETILEKMGLHISFPSWSL----DTIPGRT 903
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMW-RRYS 119
S +CPTL R S S PGL SK+R T+ R TG+G++ + YS
Sbjct: 902 SISCPTLRTPLRILPPATPPFRSSTS-QPGLFTSKDRITMSRGWEVKSLTGMGIFLQMYS 726
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILFC 166
S L FS AE+G G +A + R Y S A+ S TRSILFC
Sbjct: 725 QITSMLYFSWAEMGITGAPSATVPCTNLRICSYCSFAWLSFTRSILFC 582
>ref|XM_002171709.1| Schizosaccharomyces japonicus yFS275 translation initiation factor
eIF2 gamma subunit, mRNA
Length = 1347
Score = 68.9 bits (167), Expect = 5e-10, Method: Composition-based stats.
Identities = 62/143 (43%), Positives = 79/143 (55%), Gaps = 1/143 (0%)
Frame = -2
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R +VGS+VVPT + PPG A +L SA R T+R G + RP SLV T PGRI
Sbjct: 998 SARHKVGSTVVPTPIKPPGTASFRSLCSAKRETMREKMGWHLIRPSSSLV----TIPGRI 831
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMW-RRYS 119
S + P + S +P+PGLL SKER T+ R RTG+G++ YS
Sbjct: 830 SISSPR*RTPVRIEPPATPPFKSS-TPAPGLLTSKERMTMRRGADVKSRTGMGIFLTMYS 654
Query: 120 SRXSTLRFSCAEIGTIGTFNAML 142
S L F+ AEIGTIG F+A +
Sbjct: 653 RIASMLYFNWAEIGTIGAFSATV 585
>gb|BT059206.1| Salmo salar clone ssal-rgf-532-182 Eukaryotic translation initiation
factor 2 subunit 3 putative mRNA, complete cds
Length = 2109
Score = 68.9 bits (167), Expect = 5e-10, Method: Composition-based stats.
Identities = 69/163 (42%), Positives = 81/163 (49%), Gaps = 2/163 (1%)
Frame = -2
Query: 5 RVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRISTTC 64
RVGS +VPT MSPPG AYC +L SA T+ GL + P SL T PGR S +
Sbjct: 1040 RVGSILVPTPMSPPGAAYCKSLCSAKSETILEKMGLHISFPSWSL----DTMPGRTSNS* 873
Query: 65 PTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMW-RRYSSRXS 123
PTL R S S PGLL S +R T+ G G++ YS S
Sbjct: 872 PTLSTPFRILPPATPPFRSSTS-QPGLLTSNDRITISLGSEVKSLMGTGIFLTMYSHTTS 696
Query: 124 TLRFSCAEIGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILF 165
L FS AEIG IG +A + AR Y S A+ S TRSILF
Sbjct: 695 MLYFSWAEIGIIGAPSATVP*TKARICSYCSLAWLSLTRSILF 567
>ref|XM_002070447.1| Drosophila willistoni GK12089 (Dwil\GK12089), mRNA
Length = 3024
Score = 68.6 bits (166), Expect = 6e-10, Method: Composition-based stats.
Identities = 69/164 (42%), Positives = 83/164 (50%), Gaps = 2/164 (1%)
Frame = -2
Query: 5 RVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRISTTC 64
+VGS +VPT M PPG AYCS+ SA T+R G V P SLV T PGR S +
Sbjct: 2633 KVGSILVPTPMRPPGTAYCSSFCSAKSDTMREKIGRQVILPSLSLV----TTPGRTSISW 2466
Query: 65 PTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIG-MWRRYSSRXS 123
PTL RS + PGLL S +R T+ R GA R G G ++ YS S
Sbjct: 2465 PTLRTPLNMEPPATPPF-RS*TSQPGLLTSNDRITIRRGGALKSRCGTGILFTIYSHSTS 2289
Query: 124 TLRFSCAEIGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILFC 166
L FS AE+G IG +A + Y S A S T+SILFC
Sbjct: 2288 ILYFS*AEMGIIGAPSATVPWTNLVISSYCSFA*LSLTKSILFC 2157
>ref|XM_001879676.1| Laccaria bicolor S238N-H82 hypothetical protein partial mRNA
Length = 1479
Score = 68.6 bits (166), Expect = 7e-10, Method: Composition-based stats.
Identities = 70/163 (42%), Positives = 82/163 (50%), Gaps = 2/163 (1%)
Frame = -2
Query: 6 VGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRISTTCP 65
VGS +VPT M PPG A LFSA R + + GL + RP S V T PGRIST+ P
Sbjct: 1067 VGSILVPTPMRPPGTANDKRLFSACRDMILLKIGLHLFRPALSFV----TIPGRISTSWP 900
Query: 66 TLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGM-WRRYSSRXST 124
L S S +PGL SKER T+ R RTGIGM YS S
Sbjct: 899 KRRTPFRMDPPATPPLSSSTS-APGLFTSKERMTINRGSEVKSRTGIGMRLTMYSLTASM 723
Query: 125 LRFSCAEIGTIGTFNAMLSKXARTWRY-USCAFTSPTRSILFC 166
L FSCAEIGT+G +A + + S A +S RS LFC
Sbjct: 722 LYFSCAEIGTMGEDSATVPFTNADMLF*CSSACSSLIRSTLFC 594
>gb|BC088563.1| Xenopus tropicalis eukaryotic translation initiation factor 2,
subunit 3 gamma, 52kDa, mRNA (cDNA clone MGC:97748
IMAGE:6987865), complete cds
Length = 2319
Score = 68.6 bits (166), Expect = 7e-10, Method: Composition-based stats.
Identities = 69/168 (41%), Positives = 83/168 (49%), Gaps = 2/168 (1%)
Frame = -3
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R VGS +VPT + PPG AYC +L SA + T+ GL + P S T PGR
Sbjct: 1057 SARHNVGSILVPTPIRPPGAAYCRSLCSANKDTILENIGLHMSFPSLSF----ETIPGRT 890
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGM-WRRYS 119
S +CPT LR S S PGLL SK+ T+ R G G+ + YS
Sbjct: 889 SISCPTFNTPLRILPPATPPLRSSTS-HPGLLTSKDLITMSLGSEMKSRRGTGIFFTMYS 713
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILFC 166
S L FS AEIG IG +A + AR Y S A S T+SILFC
Sbjct: 712 QTTSILYFS*AEIGMIGAPSATVPCTNARICSYCSFA*LSLTKSILFC 569
>emb|CU329671.1| Schizosaccharomyces pombe chromosome II
Length = 4539804
Score = 68.2 bits (165), Expect = 9e-10, Method: Composition-based stats.
Identities = 62/143 (43%), Positives = 75/143 (52%), Gaps = 1/143 (0%)
Frame = -2
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R RVGS+VVPT + PPG A +L SA R +R G + RP S V T PGRI
Sbjct: 2188703 SARQRVGSTVVPTPIKPPGTAIFKSLCSANREIIREKIGWHLMRPSSSFV----TIPGRI 2188536
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMWRR-YS 119
S + LR S S +PGLL SKER T+ R RTG+G++ YS
Sbjct: 2188535 SISSFKRRTPVKIEPPATPPLRSSTS-APGLLTSKERITIKRGAVVKSRTGMGIFLTIYS 2188359
Query: 120 SRXSTLRFSCAEIGTIGTFNAML 142
S L S AEIGTIG F+A +
Sbjct: 2188358 RMASMLYLSWAEIGTIGEFSATV 2188290
>ref|NM_001021805.1| Schizosaccharomyces pombe translation initiation factor eIF2 gamma
subunit (tif213) partial mRNA
Length = 1341
Score = 68.2 bits (165), Expect = 9e-10, Method: Composition-based stats.
Identities = 62/143 (43%), Positives = 75/143 (52%), Gaps = 1/143 (0%)
Frame = -2
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R RVGS+VVPT + PPG A +L SA R +R G + RP S V T PGRI
Sbjct: 992 SARQRVGSTVVPTPIKPPGTAIFKSLCSANREIIREKIGWHLMRPSSSFV----TIPGRI 825
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMWRR-YS 119
S + LR S S +PGLL SKER T+ R RTG+G++ YS
Sbjct: 824 SISSFKRRTPVKIEPPATPPLRSSTS-APGLLTSKERITIKRGAVVKSRTGMGIFLTIYS 648
Query: 120 SRXSTLRFSCAEIGTIGTFNAML 142
S L S AEIGTIG F+A +
Sbjct: 647 RMASMLYLSWAEIGTIGEFSATV 579
>gb|U37354.1|SPU37354 Schizosaccharomyces pombe initiation factor eIF-2 gamma subunit mRNA,
complete cds
Length = 1680
Score = 68.2 bits (165), Expect = 9e-10, Method: Composition-based stats.
Identities = 62/143 (43%), Positives = 75/143 (52%), Gaps = 1/143 (0%)
Frame = -3
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R RVGS+VVPT + PPG A +L SA R +R G + RP S V T PGRI
Sbjct: 1249 SARQRVGSTVVPTPIKPPGTAIFKSLCSANREIIREKIGWHLMRPSSSFV----TIPGRI 1082
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMWRR-YS 119
S + LR S S +PGLL SKER T+ R RTG+G++ YS
Sbjct: 1081 SISSFKRRTPVKIEPPATPPLRSSTS-APGLLTSKERITIKRGAVVKSRTGMGIFLTIYS 905
Query: 120 SRXSTLRFSCAEIGTIGTFNAML 142
S L S AEIGTIG F+A +
Sbjct: 904 RMASMLYLSWAEIGTIGEFSATV 836
>ref|XM_001776501.1| Physcomitrella patens subsp. patens predicted protein
(PHYPADRAFT_193916) mRNA, complete cds
Length = 1958
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 60/143 (41%), Positives = 78/143 (54%), Gaps = 1/143 (0%)
Frame = -1
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S RVRVGS VVPT + PPG A S+ FSA + +R G+ + P SLV+ PGR
Sbjct: 1226 SARVRVGSMVVPTPIRPPGTANWSSFFSANKDVIREKIGVHLIPPLSSLVV----IPGRT 1059
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIG-MWRRYS 119
S CPT L S S +PGLL S +R T+M GA + +GIG ++ YS
Sbjct: 1058 SILCPTRNTPLRILPPATPPLISSTS-APGLLTSNDRITIMFGGATKFLSGIGILFTMYS 882
Query: 120 SRXSTLRFSCAEIGTIGTFNAML 142
STL S AE+GT G +A++
Sbjct: 881 HTTSTLYLS*AEMGTTGAPSAIV 813
>ref|XM_001359856.2| Drosophila pseudoobscura pseudoobscura GA19622 (Dpse\GA19622), mRNA
Length = 3033
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 69/168 (41%), Positives = 82/168 (48%), Gaps = 2/168 (1%)
Frame = -2
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R VGS +VPT + PPG AYCS+ SA T+R G V P SLV T PGR
Sbjct: 2660 SARQSVGSILVPTPIRPPGTAYCSSFCSANSETIRENMGRQVMLPSLSLV----TTPGRT 2493
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIG-MWRRYS 119
S + PT RS + PGL SKER T+ R GA R G G ++ YS
Sbjct: 2492 SISWPTFSTPLRMEPPATPPF-RSCTSQPGLFTSKERMTIRRGGALKSRCGTGILFTIYS 2316
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILFC 166
S L S AE+G IG +A + Y S A+ S RSILFC
Sbjct: 2315 QSTSMLYLSWAEMGIIGAPSATVPWTNLVISSYCSFAWLSLIRSILFC 2172
>ref|XM_002019663.1| Drosophila persimilis GL12073 (Dper\GL12073), mRNA
Length = 3015
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 69/168 (41%), Positives = 82/168 (48%), Gaps = 2/168 (1%)
Frame = -2
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R VGS +VPT + PPG AYCS+ SA T+R G V P SLV T PGR
Sbjct: 2669 SARQSVGSILVPTPIRPPGTAYCSSFCSANSETIRENMGRQVMLPSLSLV----TTPGRT 2502
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIG-MWRRYS 119
S + PT RS + PGL SKER T+ R GA R G G ++ YS
Sbjct: 2501 SISWPTFSTPLRMEPPATPPF-RSCTSQPGLFTSKERMTIRRGGALKSRCGTGILFTIYS 2325
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILFC 166
S L S AE+G IG +A + Y S A+ S RSILFC
Sbjct: 2324 QSTSMLYLSWAEMGIIGAPSATVPWTNLVISSYCSFAWLSLIRSILFC 2181
>ref|XM_001362496.1| PREDICTED: Monodelphis domestica similar to translation initiation
factor eIF-2 gamma subunit (LOC100010358), mRNA
Length = 1656
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 69/168 (41%), Positives = 82/168 (48%), Gaps = 2/168 (1%)
Frame = -3
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R +VGS VPT + PPG AYC +L SA T+ GL + P SL T PG
Sbjct: 1087 SARHKVGSIFVPTPIRPPGAAYCRSLCSAKSDTILEKIGLHMSFPSLSL----ETMPGLT 920
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMWRR-YS 119
S +CPT LR S S PGLL SK+R T+ G G++ YS
Sbjct: 919 SNSCPTFNTPLRILPPATPPLRSSTS-QPGLLTSKDRITISLGSEVKSLGGTGIFFTIYS 743
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILFC 166
S L FS AEIG IG +A + AR Y S A S T+SILFC
Sbjct: 742 QTTSILYFS*AEIGIIGAPSATVPCTNARICSYCSLA*LSFTKSILFC 599
>ref|XM_002303439.1| Populus trichocarpa predicted protein, mRNA
Length = 1670
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 60/143 (41%), Positives = 73/143 (51%), Gaps = 1/143 (0%)
Frame = -3
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S RVRVGS VVPT M PPG A CS+ SA T+ V+ G+ P SL + PGRI
Sbjct: 1149 SARVRVGSMVVPTPMRPPGTANCSSFCSAYNDTILVYIGVHFMFPASSLTM----IPGRI 982
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGM-WRRYS 119
S T L S S PGL SK+R T+M G + +GIG+ + YS
Sbjct: 981 SIN*LTFKTPLKMLPPATPPLISSTS-YPGLFTSKDRITIMLGGEVKFLSGIGIFFMMYS 805
Query: 120 SRXSTLRFSCAEIGTIGTFNAML 142
S L FS AEIGT G +A +
Sbjct: 804 HTTSMLYFS*AEIGTTGAPSATV 736
>ref|XM_001965910.1| Drosophila ananassae GF11769 (Dana\GF11769), mRNA
Length = 3063
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 68/168 (40%), Positives = 82/168 (48%), Gaps = 2/168 (1%)
Frame = -2
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R VGS +VPT + PPG AYCS+ SA T+R G V P SLV T PGR
Sbjct: 2684 SARHSVGSILVPTPIRPPGTAYCSSFCSANSETMREKIGRQVMLPSLSLV----TTPGRT 2517
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIG-MWRRYS 119
S + PT + + S PGL SK+R T+ R GA R G G ++ YS
Sbjct: 2516 SISWPTFRTPLRMEPPATPPFKSATS-HPGLFTSKDRMTINRGGALKSRCGTGILFTMYS 2340
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILFC 166
S L SCA+IG IG +A + Y S A S RSILFC
Sbjct: 2339 QSTSILYLSCADIGIIGAPSATVPCTNLVISSYCSFA*LSLIRSILFC 2196
>ref|NM_058559.5| Caenorhabditis elegans hypothetical protein (Y39G10AR.8) mRNA,
complete cds
Length = 1699
Score = 67.4 bits (163), Expect = 1e-09, Method: Composition-based stats.
Identities = 60/143 (41%), Positives = 71/143 (49%), Gaps = 1/143 (0%)
Frame = -2
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R VGS VPT M PPG AY S FSA R ++R G P V T PGR
Sbjct: 1089 SPRQSVGSIFVPTPMRPPGTAYSSWFFSANRESIREKIGRHWS*P----VAVFETIPGRT 922
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMW-RRYS 119
S +CPT + S S PGLL S +R + R G RTG G++ +RYS
Sbjct: 921 SISCPTRRIPLVNVPPATPPFKFSTS-DPGLLTSNDRIMMRRAGDLKSRTGTGIFLQRYS 745
Query: 120 SRXSTLRFSCAEIGTIGTFNAML 142
STL SCAEIG G F+A +
Sbjct: 744 QTRSTLYLSCAEIGMTGAFSATV 676
>ref|XM_313355.3| Anopheles gambiae str. PEST AGAP003597-PA (AgaP_AGAP003597) mRNA,
complete cds
Length = 2844
Score = 67.0 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 69/168 (41%), Positives = 81/168 (48%), Gaps = 2/168 (1%)
Frame = -2
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R VGS VPT +SPPG A CS+ S T+ GL V RP SL+ T PGR
Sbjct: 2537 SARQSVGSIFVPTPISPPGTANCSSFCSVYSDTIFEKMGLHVSRPSASLL----TSPGRT 2370
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGM-WRRYS 119
S + PT RS + PGL S ER T+ R + R GIG+ + YS
Sbjct: 2369 SISWPTFSTPRRIEPPATPPF-RSFTSQPGLFTSNERITIRRGASMKLRGGIGIFFVMYS 2193
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLSKXARTW-RYUSCAFTSPTRSILFC 166
S L S AEIG IG +A + T Y S A S TRSILFC
Sbjct: 2192 HSTSMLYLSWAEIGMIGAPSATVPCTNFTI*SYCSFACESFTRSILFC 2049
>emb|AM050265.1| Drosophila nasutoides partial eIF2g gene for putative translation
initiation factor 2 gamma subunit and partial su(var)3-9
gene for putative H3K9 methyltransferase
Length = 5128
Score = 67.0 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 69/168 (41%), Positives = 82/168 (48%), Gaps = 2/168 (1%)
Frame = -2
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R VGS +VPT + PPG AYCS+ SA T+R G V P S V T PGR
Sbjct: 4869 SARQSVGSILVPTPIKPPGTAYCSSFCSANSETMREKMGRQVILPSLSFV----TTPGRT 4702
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIG-MWRRYS 119
S + PT L RS + PGL S +R T+ R GA R G G ++ YS
Sbjct: 4701 SISWPTFSTPLNMEPPATPPL-RSCTSQPGLFTSNDRMTIRRGGALKSRCGTGILFTMYS 4525
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILFC 166
S L FS AEIG IG +A + Y S A S T+SILFC
Sbjct: 4524 HSTSMLYFS*AEIGIIGAPSATVP*TNFVISSYCSFA*LSLTKSILFC 4381
>gb|BC043656.1| Mus musculus eukaryotic translation initiation factor 2, subunit 3,
structural gene Y-linked, mRNA (cDNA clone MGC:49070
IMAGE:5368023), complete cds
Length = 1809
Score = 66.2 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 68/168 (40%), Positives = 82/168 (48%), Gaps = 2/168 (1%)
Frame = -3
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R VGS VPT + PPG AY +L SA R T+ GL + P SL T PG
Sbjct: 1057 SARHNVGSIFVPTPIRPPGAAY*RSLCSAKRDTILEKIGLHISFPSPSL----ETIPGLT 890
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMWRR-YS 119
S +CPT LR S S PGLL SK+R T+ R G G++ YS
Sbjct: 889 SISCPTFNTPFKILPPATPPLRSSTS-QPGLLTSKDRITISRGSEVKSLRGTGIFFTIYS 713
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILFC 166
S L F+ AEIG IG +A + A Y S A+ S T+SILFC
Sbjct: 712 HTTSILYFN*AEIGIIGAPSATVPCTNASICSYCSLAWLSFTKSILFC 569
>emb|AJ006584.1|MMU6584 Mus musculus mRNA for translation initiation factor eIF2 gamma Y
Length = 1801
Score = 66.2 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 68/168 (40%), Positives = 82/168 (48%), Gaps = 2/168 (1%)
Frame = -1
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R VGS VPT + PPG AY +L SA R T+ GL + P SL T PG
Sbjct: 1057 SARHNVGSIFVPTPIRPPGAAY*RSLCSAKRDTILEKIGLHISFPSPSL----ETIPGLT 890
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMWRR-YS 119
S +CPT LR S S PGLL SK+R T+ R G G++ YS
Sbjct: 889 SISCPTFNTPFKILPPATPPLRSSTS-QPGLLTSKDRITISRGSEVKSLRGTGIFFTIYS 713
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILFC 166
S L F+ AEIG IG +A + A Y S A+ S T+SILFC
Sbjct: 712 HTTSILYFN*AEIGIIGAPSATVPCTNASICSYCSLAWLSFTKSILFC 569
>ref|XM_001418515.1| Ostreococcus lucimarinus CCE9901 predicted protein (OSTLU_32338)
mRNA, complete cds
Length = 1614
Score = 66.2 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 67/168 (39%), Positives = 83/168 (49%), Gaps = 2/168 (1%)
Frame = -1
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S RV VGS VVPT + PPG AY S SA T+RV GL P SLV T PGR
Sbjct: 1236 SARVSVGSHVVPTPIKPPGTAY*SRFCSANSETMRVMMGLH*IFPSASLV----TMPGRT 1069
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMW-RRYS 119
S + PT S S +PGL S +R T+M G + +G G++ YS
Sbjct: 1068 SMS*PTFNTPWRIDPPATPP*ISSTS-APGLFTSNDRMTIMFGGEMKFLSGTGIFLMMYS 892
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILFC 166
S L F+CAEIG G +A++ + Y A S T+SILFC
Sbjct: 891 HTTSMLYFNCAEIGITGAPSAIVP*MNLQIVSYWFAAAFSCTKSILFC 748
>gb|CP000586.1| Ostreococcus lucimarinus CCE9901 chromosome 6, complete sequence
Length = 818664
Score = 66.2 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 67/168 (39%), Positives = 83/168 (49%), Gaps = 2/168 (1%)
Frame = +1
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S RV VGS VVPT + PPG AY S SA T+RV GL P SLV T PGR
Sbjct: 701611 SARVSVGSHVVPTPIKPPGTAY*SRFCSANSETMRVMMGLH*IFPSASLV----TMPGRT 701778
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMW-RRYS 119
S + PT S S +PGL S +R T+M G + +G G++ YS
Sbjct: 701779 SMS*PTFNTPWRIDPPATPP*ISSTS-APGLFTSNDRMTIMFGGEMKFLSGTGIFLMMYS 701955
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILFC 166
S L F+CAEIG G +A++ + Y A S T+SILFC
Sbjct: 701956 HTTSMLYFNCAEIGITGAPSAIVP*MNLQIVSYWFAAAFSCTKSILFC 702099
>emb|AJ715864.1| Forficula auricularia mRNA for eukaryotic translation initiation
factor 2 gamma subunit (eIF2g gene)
Length = 1756
Score = 65.9 bits (159), Expect = 4e-09, Method: Composition-based stats.
Identities = 65/164 (39%), Positives = 81/164 (49%), Gaps = 2/164 (1%)
Frame = -3
Query: 5 RVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRISTTC 64
RVGS +VPT + PPG A C++ SA R T+R G V P SL T PGR S +
Sbjct: 1067 RVGSILVPTPIRPPGTANCNSFCSA*RDTIREKIGRHVILPWLSL----DTSPGRTSISI 900
Query: 65 PTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMWRR-YSSRXS 123
PT R S S PGL S +R T+ R R GIG++ YSSR S
Sbjct: 899 PTFNTPLRIDPPATPPFRSSTS-QPGLFTSNDRMTIKRGSEVKSRIGIGVFLTIYSSRTS 723
Query: 124 TLRFSCAEIGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILFC 166
L F+ AE+G G +A + Y S A+ S T+SILFC
Sbjct: 722 MLYFN*AEMGITGAPSATVPITNFVICSYCSFAWPSFTKSILFC 591
>dbj|AK009448.1| Mus musculus adult male tongue cDNA, RIKEN full-length enriched
library, clone:2310021K08 product:eukaryotic translation
initiation factor 2, subunit 3, structural gene Y-linked,
full insert sequence
Length = 1764
Score = 65.5 bits (158), Expect = 6e-09, Method: Composition-based stats.
Identities = 67/168 (39%), Positives = 81/168 (48%), Gaps = 2/168 (1%)
Frame = -1
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R VGS VPT + PPG AY +L SA R T+ GL + P SL T PG
Sbjct: 1062 SARHNVGSIFVPTPIRPPGAAY*RSLCSAKRDTILEKIGLHISFPSPSL----ETIPGLT 895
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMWRR-YS 119
S +CPT LR S S PGLL SK+R + R G G++ YS
Sbjct: 894 SISCPTFNTPFKILPPATPLLRSSTS-QPGLLTSKDRIXISRGSEVKSLRGTGIFFTIYS 718
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILFC 166
S L F+ AEIG IG +A + A Y S A+ S T+SILFC
Sbjct: 717 HTTSILYFN*AEIGIIGAPSATVPCTNASICSYCSLAWLSFTKSILFC 574
>emb|AJ715863.1| Enallagma cyathigerum mRNA for eukaryotic translation initiation
factor 2 gamma subunit (eIF2g gene)
Length = 1830
Score = 65.1 bits (157), Expect = 8e-09, Method: Composition-based stats.
Identities = 69/168 (41%), Positives = 82/168 (48%), Gaps = 2/168 (1%)
Frame = -2
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R VGS +VPT ++PPG A S+ SA R T+R G V P SL T PGR
Sbjct: 1253 SARHNVGSILVPTPINPPGTAN*SSFCSAKRETIRENIGRQVSFPSESL----DTNPGRT 1086
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGM-WRRYS 119
S + PT LR S S PGL SKER T+ R G G G+ + YS
Sbjct: 1085 SISIPTFRTPQRMLPPATPPLRSSTS-HPGLFTSKERMTIRRGGDEKSLNGTGIFFTMYS 909
Query: 120 SRXSTLRFSCAEIGTIGTFNAML-SKXARTWRYUSCAFTSPTRSILFC 166
S L F+ AEIGT G +A + R Y S A S T+SILFC
Sbjct: 908 QITSMLYFN*AEIGTTGAPSATVPGTNFRI*PYCSFACPSLTKSILFC 765
>dbj|AK231727.1| Sus scrofa mRNA, clone:LNG010016C04, expressed in lung
Length = 1814
Score = 64.7 bits (156), Expect = 9e-09, Method: Composition-based stats.
Identities = 68/168 (40%), Positives = 82/168 (48%), Gaps = 2/168 (1%)
Frame = -1
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R +VGS VPT + PPG AY +L SA T+ GL + P SL T PG
Sbjct: 1073 SARHKVGSIFVPTPIRPPGAAY*RSLCSAKSDTILEKIGLHMSFPSLSL----ETIPGLT 906
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGM-WRRYS 119
S + PT LR S S PGLL SK+ T+ R G G+ + YS
Sbjct: 905 SISWPTFNTPFRILPPATPPLRSSTS-QPGLLTSKDLITISRGSEVKSLGGTGIFFTMYS 729
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILFC 166
S L FS AEIG IG +A + AR W Y S A+ S T+SILFC
Sbjct: 728 QTTSILYFS*AEIGIIGAPSATVPCTNARIWSYCSLAWLSFTKSILFC 585
>gb|AY610059.1| Sus scrofa clone Clu_6088.scr.msk.p1.Contig3, mRNA sequence
Length = 1959
Score = 64.7 bits (156), Expect = 9e-09, Method: Composition-based stats.
Identities = 68/168 (40%), Positives = 82/168 (48%), Gaps = 2/168 (1%)
Frame = -2
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R +VGS VPT + PPG AY +L SA T+ GL + P SL T PG
Sbjct: 1055 SARHKVGSIFVPTPIRPPGAAY*RSLCSAKSDTILEKIGLHMSFPSLSL----ETIPGLT 888
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGM-WRRYS 119
S + PT LR S S PGLL SK+ T+ R G G+ + YS
Sbjct: 887 SISWPTFNTPFRILPPATPPLRSSTS-QPGLLTSKDLITISRGSEVKSLGGTGIFFTMYS 711
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILFC 166
S L FS AEIG IG +A + AR W Y S A+ S T+SILFC
Sbjct: 710 QTTSILYFS*AEIGIIGAPSATVPCTNARIWSYCSLAWLSFTKSILFC 567
>ref|XM_001545363.1| Botryotinia fuckeliana B05.10 hypothetical protein (BC1G_16041)
partial mRNA
Length = 1557
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 58/137 (42%), Positives = 70/137 (51%), Gaps = 1/137 (0%)
Frame = -2
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R RVGS +VPT +SPPG AY ++LFS LRV + + G PP S T PG I
Sbjct: 1199 SARQRVGSILVPTPISPPGTAYFNSLFSELRVMILLKIG-*HLTPPFS---SRETIPGLI 1032
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMWR-RYS 119
S + P LM S+S +PGLL SKER T++ G GM R S
Sbjct: 1031 SISSPNLMTPCKILPPATPPFNSSIS-APGLLTSKERITIICGSMVKSLGGTGMLETRAS 855
Query: 120 SRXSTLRFSCAEIGTIG 136
S L F+ AEIG IG
Sbjct: 854 LTASMLNFNWAEIGIIG 804
>ref|XM_001667985.1| Caenorhabditis briggsae hypothetical protein CBG03884 partial mRNA
Length = 1410
Score = 64.3 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 60/143 (41%), Positives = 74/143 (51%), Gaps = 1/143 (0%)
Frame = -2
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R VGS VPT +SPPG AY S FSA ++R G + C + + E T PGR
Sbjct: 1049 SPRQSVGSIFVPTPISPPGTAYSS*FFSAKSESMREKIG---RHWSCPVAVFE-TIPGRT 882
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMW-RRYS 119
S +CPT R S S PGLL SK+R + R G RTG G++ +RYS
Sbjct: 881 SISCPTRRIPLVNVPPATPPFRFSTS-DPGLLTSKDRIMIKRAGDLKSRTGTGIFLQRYS 705
Query: 120 SRXSTLRFSCAEIGTIGTFNAML 142
STL S AEIG G F+A +
Sbjct: 704 QTRSTLYLS*AEIGITGAFSATV 636
>ref|XM_002227889.1| Branchiostoma floridae hypothetical protein (BRAFLDRAFT_125911) mRNA,
complete cds
Length = 1920
Score = 64.3 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 66/168 (39%), Positives = 83/168 (49%), Gaps = 2/168 (1%)
Frame = -2
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R VGS +VPT + PPG A C + SA R T+ GL + P SL T PGR
Sbjct: 1070 SARHSVGSILVPTPIRPPGTANCRSFCSANRETILEKMGLHISFPSWSL----DTIPGRT 903
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMW-RRYS 119
S + PTL + S S PGL SK+R T+ R TG+G++ + YS
Sbjct: 902 SIS*PTLRTPLRILPPATPPFKSSTS-QPGLFTSKDRITMSRGWEVKSLTGMGIFLQMYS 726
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILFC 166
S L FS AE+G G +A + R Y S A+ S TRSILFC
Sbjct: 725 QITSMLYFSWAEMGITGAPSATVPCTNLRICSYCSLAWLSFTRSILFC 582
>emb|AJ715870.1| Bombyx mori mRNA for eukaryotic translation initiation factor 2 gamma
subunit (eIF2g gene)
Length = 1553
Score = 63.9 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 65/169 (38%), Positives = 82/169 (48%), Gaps = 3/169 (1%)
Frame = -2
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R VGS VPT + PPG AYCS+ SA T+R G V P SL+ TKPGR
Sbjct: 1126 SARHSVGSIFVPTPIRPPGTAYCSSFCSANSETMRENMGRQVNLPSASLL----TKPGRT 959
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMWRR-YS 119
S + PT+ RRS + PGL S ER T++R G G G++ YS
Sbjct: 958 SISIPTVRTP*RIDPPATPP-RRSSTSQPGLFTSNERITIIRGGDVKSLRGTGIFFVIYS 782
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLSKXARTWRYUSCAFTSP--TRSILFC 166
R S L S A++G IG +A + C+ P T+SILFC
Sbjct: 781 QRTSILYLS*ADMGIIGAPSATVP-*TNFTICSCCSLACPSLTKSILFC 638
>ref|XM_001833963.1| Coprinopsis cinerea okayama7#130 hypothetical protein (CC1G_09429)
partial mRNA
Length = 1434
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 57/138 (41%), Positives = 75/138 (54%), Gaps = 1/138 (0%)
Frame = -2
Query: 6 VGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRISTTCP 65
VGS +VPT ++PPG A C FSA ++ + + GL + P SLV T PGRIST+CP
Sbjct: 1067 VGSILVPTPINPPGTANCKRFFSACKLIILLKIGLHLFLPWLSLV----TIPGRISTSCP 900
Query: 66 TLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMWRR-YSSRXST 124
+ S S +PGLL SKER T+ RTGIG++ YS S
Sbjct: 899 SRSTPRRIEPPATPPCNSSTS-APGLLTSKERITINLGSEVKSRTGIGIFFTIYSFTASM 723
Query: 125 LRFSCAEIGTIGTFNAML 142
L S AE+GT+G F+A +
Sbjct: 722 LYLSWAEMGTMGEFSATV 669
>gb|DQ120621.1| Gorilla gorilla eFI-2-gamma gene, partial cds
Length = 1413
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 67/168 (39%), Positives = 81/168 (48%), Gaps = 2/168 (1%)
Frame = -2
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R +VGS VPT + PPG AYC +L SA T+ GL + P SL T PG
Sbjct: 1052 SARHKVGSIFVPTPIRPPGAAYCRSLCSAKSETILEKIGLHMSFPSVSL----ETIPGLT 885
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGM-WRRYS 119
S + PT LR S S PGLL SK+ T+ R G G+ + YS
Sbjct: 884 SVSWPTFNTPFRILPPATPPLRSSTS-QPGLLTSKDLITISRGSEVKSLGGTGIFFTMYS 708
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILFC 166
S L FS AEIG +G +A + AR Y S A S T+SILFC
Sbjct: 707 QTTSILYFS*AEIGIMGAPSATVPWTNARICSYCSLACLSFTKSILFC 564
>ref|XM_002326559.1| Populus trichocarpa predicted protein, mRNA
Length = 1799
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 58/143 (40%), Positives = 73/143 (51%), Gaps = 1/143 (0%)
Frame = -3
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S RV+VGS VVPT + PPG A CS+ SA T+ V+ G+ P SL + PGR
Sbjct: 1161 SARVKVGSMVVPTPIRPPGTANCSSFCSAYNDTILVYIGVHFMFPASSLTM----IPGRT 994
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMWRR-YS 119
S T L S S PGLL SK+R T+M G + +GIG++ YS
Sbjct: 993 SIN*LTFKTPLRMLPPATPPLISSTS-YPGLLTSKDRITIMLGGEVKFLSGIGIFLTIYS 817
Query: 120 SRXSTLRFSCAEIGTIGTFNAML 142
S L FS AEIGT G +A +
Sbjct: 816 HTTSMLYFS*AEIGTTGAPSATV 748
>gb|BC087847.1| Homo sapiens cDNA clone IMAGE:30389268, partial cds
Length = 1854
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 67/168 (39%), Positives = 81/168 (48%), Gaps = 2/168 (1%)
Frame = -1
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R +VGS VPT + PPG AYC +L SA T+ GL + P SL T PG
Sbjct: 1050 SARHKVGSIFVPTPIRPPGAAYCRSLCSAKSETILEKIGLHMSFPSLSL----ETIPGLT 883
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGM-WRRYS 119
S + PT LR S S PGLL SK+ T+ R G G+ + YS
Sbjct: 882 SVSWPTFNTPFRILPPATPPLRSSTS-QPGLLTSKDLITISRGSEVKSLGGTGIFFTMYS 706
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILFC 166
S L FS AEIG +G +A + AR Y S A S T+SILFC
Sbjct: 705 QTTSILYFS*AEIGIMGAPSATVPWTNARICSYCSLACLSFTKSILFC 562
>gb|DQ120619.1| Homo sapiens eFI-2-gamma gene, partial cds
Length = 1413
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 67/168 (39%), Positives = 80/168 (47%), Gaps = 2/168 (1%)
Frame = -2
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R +VGS VPT + PPG AYC +L SA T+ GL + P SL T PG
Sbjct: 1052 SARHKVGSIFVPTPIRPPGAAYCRSLCSAKSETILEKIGLHMSFPSLSL----ETIPGLT 885
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIG-MWRRYS 119
S + PT LR S S PGLL SK+ T+ R G G + YS
Sbjct: 884 SVSWPTFNTPFRILPPATPPLRSSTS-QPGLLTSKDLITISRGSEVKSLGGTGNFFTMYS 708
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILFC 166
S L FS AEIG +G +A + AR Y S A S T+SILFC
Sbjct: 707 QTTSILYFS*AEIGIMGAPSATVPWTNARICSYCSLACLSFTKSILFC 564
>ref|XM_001607733.1| PREDICTED: Nasonia vitripennis similar to eukaryotic translation
initiation factor 2 gamma (LOC100123987), mRNA
Length = 1485
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 62/164 (37%), Positives = 77/164 (46%), Gaps = 2/164 (1%)
Frame = -2
Query: 5 RVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRISTTC 64
+VGS VPT +SPPG A S+ SA + T+ G V P SL T PGR S +
Sbjct: 1043 KVGSIFVPTPISPPGTANWSSFCSANKDTILENMGRQVNLPSLSL----DTNPGRTSISM 876
Query: 65 PTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMWRR-YSSRXS 123
PT + S S PGLL S + T+ R G G++ YS + S
Sbjct: 875 PTFNTPLRILPPATPPFKSSTS-HPGLLTSNDLITINRGSEVKSLIGTGIFLVIYSHKTS 699
Query: 124 TLRFSCAEIGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILFC 166
L S AEIG IG +A + R W Y S A S T+SILFC
Sbjct: 698 MLYLSWAEIGIIGAPSATVPCTNFRIWSYCSLACPSLTKSILFC 567
>ref|XM_636830.1| Dictyostelium discoideum AX4 translation initiation factor 2 gamma
(eif2G) partial mRNA
Length = 1383
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 63/163 (38%), Positives = 80/163 (49%), Gaps = 2/163 (1%)
Frame = -2
Query: 5 RVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRISTTC 64
RVGS VPT + PPG AY S+ SA R + G + P SL++ PGR S +
Sbjct: 1022 RVGSIFVPTPIKPPGTAY*SSFSSAKREIILQKIGEHLILPSNSLLI----TPGRTSISS 855
Query: 65 PTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMW-RRYSSRXS 123
P L S + PGLL S ER T++R TGIG++ YS S
Sbjct: 854 PIFNTPFKIEPPATPPLISS-TREPGLLTSNERITIIRGSDVKSLTGIGIFLTMYSQMTS 678
Query: 124 TLRFSCAEIGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILF 165
L F AEIG IG F+A++ + Y SCA S T+SILF
Sbjct: 677 ILYFI*AEIGMIGAFSAIVP*MNFKI*PYCSCAAASFTKSILF 549
>ref|XM_001494201.1| PREDICTED: Equus caballus similar to eukaryotic translation
initiation factor 2, subunit 3, structural gene X-linked
(LOC100060382), mRNA
Length = 1790
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 67/168 (39%), Positives = 82/168 (48%), Gaps = 2/168 (1%)
Frame = -2
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R +VGS VPT + PPG AY +L SA R T+ GL + P SL T PG
Sbjct: 1069 SARHKVGSIFVPTPIRPPGAAY*RSLCSAKRDTILEKIGLHMSFPSLSL----ETIPGLT 902
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGM-WRRYS 119
S + PT LR S S PGLL SK+ T+ R G G+ + YS
Sbjct: 901 SISWPTFNTPFRILPPATPPLRSSTS-QPGLLTSKDLITISRGSEVKSLGGTGIFFTMYS 725
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILFC 166
S L F+ AEIG IG +A + AR Y S A+ S T+SILFC
Sbjct: 724 QTTSILYFN*AEIGIIGAPSATVPCTNARICSYCSLAWLSFTKSILFC 581
>gb|DQ120622.1| Pongo pygmaeus eFI-2-gamma gene, partial cds
Length = 1413
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 67/168 (39%), Positives = 81/168 (48%), Gaps = 2/168 (1%)
Frame = -2
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R +VGS VPT + PPG AYC +L SA T+ GL + P SL T PG
Sbjct: 1052 SARHKVGSIFVPTPIRPPGAAYCRSLCSAKSETILEKIGLHMSFPSLSL----ETIPGLT 885
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGM-WRRYS 119
S + PT LR S S PGLL SK+ T+ R G G+ + YS
Sbjct: 884 SVSWPTFNTPFRILPPVTPPLRSSTS-QPGLLTSKDLITISRGSEVKSLGGTGIFFTMYS 708
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILFC 166
S L FS AEIG +G +A + AR Y S A S T+SILFC
Sbjct: 707 QTTSILYFS*AEIGIMGAPSATVPWTNARICSYCSLA*LSFTKSILFC 564
>dbj|AB451353.1| Homo sapiens EIF2S3 mRNA for eukaryotic translation initiation factor
2 subunit 3, partial cds, clone: FLJ08020AAAF
Length = 1416
Score = 63.2 bits (152), Expect = 3e-08, Method: Composition-based stats.
Identities = 67/168 (39%), Positives = 81/168 (48%), Gaps = 2/168 (1%)
Frame = -2
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R +VGS VPT + PPG AYC +L SA T+ GL + P SL T PG
Sbjct: 1052 SARHKVGSIFVPTPIRPPGAAYCRSLCSAKSDTILEKIGLHMSFPSLSL----ETIPGLT 885
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGM-WRRYS 119
S + PT LR S S PGLL SK+ T+ R G G+ + YS
Sbjct: 884 SISWPTFNTPFRILPPATPPLRSSTS-QPGLLTSKDLITISRGSEVKSLGGTGIFFTMYS 708
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILFC 166
S L FS AEIG +G +A + AR Y S A S T+SILFC
Sbjct: 707 QTTSILYFS*AEIGIMGAPSATVPWTNARICSYCSLA*LSFTKSILFC 564
>dbj|AB451230.1| Homo sapiens EIF2S3 mRNA for eukaryotic translation initiation factor
2 subunit 3, complete cds, clone: FLJ08020AAAN
Length = 1419
Score = 63.2 bits (152), Expect = 3e-08, Method: Composition-based stats.
Identities = 67/168 (39%), Positives = 81/168 (48%), Gaps = 2/168 (1%)
Frame = -2
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R +VGS VPT + PPG AYC +L SA T+ GL + P SL T PG
Sbjct: 1052 SARHKVGSIFVPTPIRPPGAAYCRSLCSAKSDTILEKIGLHMSFPSLSL----ETIPGLT 885
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGM-WRRYS 119
S + PT LR S S PGLL SK+ T+ R G G+ + YS
Sbjct: 884 SISWPTFNTPFRILPPATPPLRSSTS-QPGLLTSKDLITISRGSEVKSLGGTGIFFTMYS 708
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILFC 166
S L FS AEIG +G +A + AR Y S A S T+SILFC
Sbjct: 707 QTTSILYFS*AEIGIMGAPSATVPWTNARICSYCSLA*LSFTKSILFC 564
>dbj|AK290397.1| Homo sapiens cDNA FLJ78120 complete cds, highly similar to Homo
sapiens eukaryotic translation initiation factor 2,
subunit 3 gamma, 52kDa (EIF2S3), mRNA
Length = 1608
Score = 63.2 bits (152), Expect = 3e-08, Method: Composition-based stats.
Identities = 67/168 (39%), Positives = 81/168 (48%), Gaps = 2/168 (1%)
Frame = -1
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R +VGS VPT + PPG AYC +L SA T+ GL + P SL T PG
Sbjct: 1065 SARHKVGSIFVPTPIRPPGAAYCRSLCSAKSDTILEKIGLHMSFPSLSL----ETIPGLT 898
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGM-WRRYS 119
S + PT LR S S PGLL SK+ T+ R G G+ + YS
Sbjct: 897 SISWPTFNTPFRILPPATPPLRSSTS-QPGLLTSKDLITISRGSEVKSLGGTGIFFTMYS 721
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILFC 166
S L FS AEIG +G +A + AR Y S A S T+SILFC
Sbjct: 720 QTTSILYFS*AEIGIMGAPSATVPWTNARICSYCSLA*LSFTKSILFC 577
>gb|DQ894977.2| Synthetic construct Homo sapiens clone IMAGE:100009437;
FLH179988.01L; RZPDo839E09131D eukaryotic translation
initiation factor 2, subunit 3 gamma, 52kDa (EIF2S3)
gene, encodes complete protein
Length = 1459
Score = 63.2 bits (152), Expect = 3e-08, Method: Composition-based stats.
Identities = 67/168 (39%), Positives = 81/168 (48%), Gaps = 2/168 (1%)
Frame = -2
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R +VGS VPT + PPG AYC +L SA T+ GL + P SL T PG
Sbjct: 1074 SARHKVGSIFVPTPIRPPGAAYCRSLCSAKSDTILEKIGLHMSFPSLSL----ETIPGLT 907
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGM-WRRYS 119
S + PT LR S S PGLL SK+ T+ R G G+ + YS
Sbjct: 906 SISWPTFNTPFRILPPATPPLRSSTS-QPGLLTSKDLITISRGSEVKSLGGTGIFFTMYS 730
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILFC 166
S L FS AEIG +G +A + AR Y S A S T+SILFC
Sbjct: 729 QTTSILYFS*AEIGIMGAPSATVPWTNARICSYCSLA*LSFTKSILFC 586
>gb|DQ891794.2| Synthetic construct clone IMAGE:100004424; FLH179992.01X;
RZPDo839E09132D eukaryotic translation initiation factor
2, subunit 3 gamma, 52kDa (EIF2S3) gene, encodes complete
protein
Length = 1459
Score = 63.2 bits (152), Expect = 3e-08, Method: Composition-based stats.
Identities = 67/168 (39%), Positives = 81/168 (48%), Gaps = 2/168 (1%)
Frame = -2
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R +VGS VPT + PPG AYC +L SA T+ GL + P SL T PG
Sbjct: 1074 SARHKVGSIFVPTPIRPPGAAYCRSLCSAKSDTILEKIGLHMSFPSLSL----ETIPGLT 907
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGM-WRRYS 119
S + PT LR S S PGLL SK+ T+ R G G+ + YS
Sbjct: 906 SISWPTFNTPFRILPPATPPLRSSTS-QPGLLTSKDLITISRGSEVKSLGGTGIFFTMYS 730
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILFC 166
S L FS AEIG +G +A + AR Y S A S T+SILFC
Sbjct: 729 QTTSILYFS*AEIGIMGAPSATVPWTNARICSYCSLA*LSFTKSILFC 586
>ref|NM_001415.3| Homo sapiens eukaryotic translation initiation factor 2, subunit 3
gamma, 52kDa (EIF2S3), mRNA
Length = 3486
Score = 63.2 bits (152), Expect = 3e-08, Method: Composition-based stats.
Identities = 67/168 (39%), Positives = 81/168 (48%), Gaps = 2/168 (1%)
Frame = -2
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R +VGS VPT + PPG AYC +L SA T+ GL + P SL T PG
Sbjct: 1073 SARHKVGSIFVPTPIRPPGAAYCRSLCSAKSDTILEKIGLHMSFPSLSL----ETIPGLT 906
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGM-WRRYS 119
S + PT LR S S PGLL SK+ T+ R G G+ + YS
Sbjct: 905 SISWPTFNTPFRILPPATPPLRSSTS-QPGLLTSKDLITISRGSEVKSLGGTGIFFTMYS 729
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILFC 166
S L FS AEIG +G +A + AR Y S A S T+SILFC
Sbjct: 728 QTTSILYFS*AEIGIMGAPSATVPWTNARICSYCSLA*LSFTKSILFC 585
>ref|XM_001089902.1| PREDICTED: Macaca mulatta similar to eukaryotic translation
initiation factor 2, subunit 3 gamma, 52kDa (LOC698763),
mRNA
Length = 3401
Score = 63.2 bits (152), Expect = 3e-08, Method: Composition-based stats.
Identities = 67/168 (39%), Positives = 81/168 (48%), Gaps = 2/168 (1%)
Frame = -2
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R +VGS VPT + PPG AYC +L SA T+ GL + P SL T PG
Sbjct: 1111 SARHKVGSIFVPTPIRPPGAAYCRSLCSAKSDTILEKIGLHMSFPSLSL----ETIPGLT 944
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGM-WRRYS 119
S + PT LR S S PGLL SK+ T+ R G G+ + YS
Sbjct: 943 SISWPTFNTPFRILPPATPPLRSSTS-QPGLLTSKDLITISRGSEVKSLGGTGIFFTMYS 767
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILFC 166
S L FS AEIG +G +A + AR Y S A S T+SILFC
Sbjct: 766 QTTSILYFS*AEIGIMGAPSATVPWTNARICSYCSLA*LSFTKSILFC 623
>gb|BC022192.1| Homo sapiens cDNA clone IMAGE:3677347, **** WARNING: chimeric clone
****
Length = 4305
Score = 63.2 bits (152), Expect = 3e-08, Method: Composition-based stats.
Identities = 67/168 (39%), Positives = 81/168 (48%), Gaps = 2/168 (1%)
Frame = +2
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R +VGS VPT + PPG AYC +L SA T+ GL + P SL T PG
Sbjct: 2438 SARHKVGSIFVPTPIRPPGAAYCRSLCSAKSDTILEKIGLHMSFPSLSL----ETIPGLT 2605
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGM-WRRYS 119
S + PT LR S S PGLL SK+ T+ R G G+ + YS
Sbjct: 2606 SISWPTFNTPFRILPPATPPLRSSTS-QPGLLTSKDLITISRGSEVKSLGGTGIFFTMYS 2782
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILFC 166
S L FS AEIG +G +A + AR Y S A S T+SILFC
Sbjct: 2783 QTTSILYFS*AEIGIMGAPSATVPWTNARICSYCSLA*LSFTKSILFC 2926
>gb|BC019906.1| Homo sapiens eukaryotic translation initiation factor 2, subunit 3
gamma, 52kDa, mRNA (cDNA clone MGC:29889 IMAGE:4419438),
complete cds
Length = 2646
Score = 63.2 bits (152), Expect = 3e-08, Method: Composition-based stats.
Identities = 67/168 (39%), Positives = 81/168 (48%), Gaps = 2/168 (1%)
Frame = -2
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R +VGS VPT + PPG AYC +L SA T+ GL + P SL T PG
Sbjct: 1073 SARHKVGSIFVPTPIRPPGAAYCRSLCSAKSDTILEKIGLHMSFPSLSL----ETIPGLT 906
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGM-WRRYS 119
S + PT LR S S PGLL SK+ T+ R G G+ + YS
Sbjct: 905 SISWPTFNTPFRILPPATPPLRSSTS-QPGLLTSKDLITISRGSEVKSLGGTGIFFTMYS 729
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILFC 166
S L FS AEIG +G +A + AR Y S A S T+SILFC
Sbjct: 728 QTTSILYFS*AEIGIMGAPSATVPWTNARICSYCSLA*LSFTKSILFC 585
>dbj|AK222577.1| Homo sapiens mRNA for eukaryotic translation initiation factor 2,
subunit 3 gamma, 52kDa variant, clone: CAE09969
Length = 1569
Score = 63.2 bits (152), Expect = 3e-08, Method: Composition-based stats.
Identities = 67/168 (39%), Positives = 81/168 (48%), Gaps = 2/168 (1%)
Frame = -1
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R +VGS VPT + PPG AYC +L SA T+ GL + P SL T PG
Sbjct: 1065 SARHKVGSIFVPTPIRPPGAAYCRSLCSAKSDTILEKIGLHMSFPSLSL----ETIPGLT 898
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGM-WRRYS 119
S + PT LR S S PGLL SK+ T+ R G G+ + YS
Sbjct: 897 SISWPTFNTPFRILPPATPPLRSSTS-QPGLLTSKDLITISRGSEVKSLGGTGIFFTMYS 721
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILFC 166
S L FS AEIG +G +A + AR Y S A S T+SILFC
Sbjct: 720 QTTSILYFS*AEIGIMGAPSATVPWTNARICSYCSLA*LSFTKSILFC 577
>emb|CR860221.1| Pongo abelii mRNA; cDNA DKFZp469K1719 (from clone DKFZp469K1719)
Length = 2122
Score = 63.2 bits (152), Expect = 3e-08, Method: Composition-based stats.
Identities = 67/168 (39%), Positives = 81/168 (48%), Gaps = 2/168 (1%)
Frame = -1
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R +VGS VPT + PPG AYC +L SA T+ GL + P SL T PG
Sbjct: 1066 SARHKVGSIFVPTPIRPPGAAYCRSLCSAKSDTILEKIGLHMSFPSLSL----ETIPGLT 899
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGM-WRRYS 119
S + PT LR S S PGLL SK+ T+ R G G+ + YS
Sbjct: 898 SISWPTFNTPFRILPPATPPLRSSTS-QPGLLTSKDLITISRGSEVKSLGGTGIFFTMYS 722
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILFC 166
S L FS AEIG +G +A + AR Y S A S T+SILFC
Sbjct: 721 QTTSILYFS*AEIGIMGAPSATVPWTNARICSYCSLA*LSFTKSILFC 578
>gb|L19161.1|HUMIEF2G Human translation initiation factor eIF-2 gamma subunit mRNA,
complete cds
Length = 1440
Score = 63.2 bits (152), Expect = 3e-08, Method: Composition-based stats.
Identities = 67/168 (39%), Positives = 81/168 (48%), Gaps = 2/168 (1%)
Frame = -2
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R +VGS VPT + PPG AYC +L SA T+ GL + P SL T PG
Sbjct: 1052 SARHKVGSIFVPTPIRPPGAAYCRSLCSAKSDTILEKIGLHMSFPSLSL----ETIPGLT 885
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGM-WRRYS 119
S + PT LR S S PGLL SK+ T+ R G G+ + YS
Sbjct: 884 SISWPTFNTPFRILPPATPPLRSSTS-QPGLLTSKDLITISRGSEVKSLGGTGIFFTMYS 708
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILFC 166
S L FS AEIG +G +A + AR Y S A S T+SILFC
Sbjct: 707 QTTSILYFS*AEIGIMGAPSATVPWTNARICSYCSLA*LSFTKSILFC 564
>ref|XM_001869526.1| Culex quinquefasciatus conserved hypothetical protein, mRNA
Length = 1502
Score = 62.8 bits (151), Expect = 3e-08, Method: Composition-based stats.
Identities = 65/168 (38%), Positives = 81/168 (48%), Gaps = 2/168 (1%)
Frame = -1
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R VGS VPT +SPPG A C + SA T+ G V P SL+ T+PGR
Sbjct: 896 SARHSVGSIFVPTPISPPGTANCRSFCSAYSDTIFE*MG*QVSLPSPSLL----TRPGRT 729
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMWR-RYS 119
S + PT+ +S + PGL S ER T+ R + GIG++ YS
Sbjct: 728 SISWPTVSTPRKIEPPATPPF-KSFTSQPGLFTSNERITINRGAPAKFLGGIGIFLVMYS 552
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLSKXART-WRYUSCAFTSPTRSILFC 166
S L SCAEIG IG +A + T S A+ S TRSILFC
Sbjct: 551 HNTSMLYLSCAEIGMIGAPSATVPCTNLTICSCCSLAWVSFTRSILFC 408
>ref|XM_970775.1| PREDICTED: Tribolium castaneum similar to heterochromatin protein,
transcript variant 2 (LOC656650), mRNA
Length = 2969
Score = 62.8 bits (151), Expect = 3e-08, Method: Composition-based stats.
Identities = 68/168 (40%), Positives = 81/168 (48%), Gaps = 2/168 (1%)
Frame = -1
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R +VGS VPT + PPG A CS+ S R T+R G V P SL+ TKPG
Sbjct: 2483 SARHKVGSIFVPTPIKPPGTANCSSFCSV*RETIREKIGRQVSLPSESLL----TKPGLT 2316
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGM-WRRYS 119
S +CPT L RS + PGL S +R T+ R TG G+ + YS
Sbjct: 2315 SISCPTFKTPRKILPPATPPL-RSFTSHPGLFTSNDRITIRRGCEVKSLTGTGIFFVMYS 2139
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLSKXART-WRYUSCAFTSPTRSILFC 166
S L FS AEIG IG +A + T S A S TRSILFC
Sbjct: 2138 QSTSILYFSWAEIGIIGAPSATVPCTNLTICSCCSLACPSFTRSILFC 1995
>ref|XM_001149413.1| PREDICTED: Pan troglodytes similar to eFI-2-gamma, transcript variant
2 (LOC738402), mRNA
Length = 2512
Score = 62.8 bits (151), Expect = 3e-08, Method: Composition-based stats.
Identities = 66/168 (39%), Positives = 80/168 (47%), Gaps = 2/168 (1%)
Frame = -2
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R +VGS VPT + PPG AYC +L SA T+ GL + P SL T PG
Sbjct: 1305 SARHKVGSIFVPTPIRPPGAAYCRSLCSAKSETILEKIGLHMSFPSLSL----ETIPGLT 1138
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGM-WRRYS 119
S + PT LR S S PGL SK+ T+ R G G+ + YS
Sbjct: 1137 SVSWPTFNTPFRILPPATPPLRSSTS-QPGLFTSKDLITISRGSEVKSLGGTGIFFTMYS 961
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILFC 166
S L FS AEIG +G +A + AR Y S A S T+SILFC
Sbjct: 960 QTTSILYFS*AEIGIMGAPSATVPWTNARICSYCSLACLSFTKSILFC 817
>ref|XM_001149353.1| PREDICTED: Pan troglodytes similar to eFI-2-gamma, transcript variant
1 (LOC738402), mRNA
Length = 2096
Score = 62.8 bits (151), Expect = 3e-08, Method: Composition-based stats.
Identities = 66/168 (39%), Positives = 80/168 (47%), Gaps = 2/168 (1%)
Frame = -3
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R +VGS VPT + PPG AYC +L SA T+ GL + P SL T PG
Sbjct: 1305 SARHKVGSIFVPTPIRPPGAAYCRSLCSAKSETILEKIGLHMSFPSLSL----ETIPGLT 1138
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGM-WRRYS 119
S + PT LR S S PGL SK+ T+ R G G+ + YS
Sbjct: 1137 SVSWPTFNTPFRILPPATPPLRSSTS-QPGLFTSKDLITISRGSEVKSLGGTGIFFTMYS 961
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILFC 166
S L FS AEIG +G +A + AR Y S A S T+SILFC
Sbjct: 960 QTTSILYFS*AEIGIMGAPSATVPWTNARICSYCSLACLSFTKSILFC 817
>gb|DQ120620.1| Pan troglodytes eFI-2-gamma gene, partial cds
Length = 1413
Score = 62.8 bits (151), Expect = 3e-08, Method: Composition-based stats.
Identities = 66/168 (39%), Positives = 80/168 (47%), Gaps = 2/168 (1%)
Frame = -2
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R +VGS VPT + PPG AYC +L SA T+ GL + P SL T PG
Sbjct: 1052 SARHKVGSIFVPTPIRPPGAAYCRSLCSAKSETILEKIGLHMSFPSLSL----ETIPGLT 885
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGM-WRRYS 119
S + PT LR S S PGL SK+ T+ R G G+ + YS
Sbjct: 884 SVSWPTFNTPFRILPPATPPLRSSTS-QPGLFTSKDLITISRGSEVKSLGGTGIFFTMYS 708
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILFC 166
S L FS AEIG +G +A + AR Y S A S T+SILFC
Sbjct: 707 QTTSILYFS*AEIGIMGAPSATVPWTNARICSYCSLACLSFTKSILFC 564
>ref|XM_001239932.1| Coccidioides immitis RS hypothetical protein (CIMG_09554) partial
mRNA
Length = 1569
Score = 62.8 bits (151), Expect = 4e-08, Method: Composition-based stats.
Identities = 66/172 (38%), Positives = 83/172 (48%), Gaps = 6/172 (3%)
Frame = -2
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R RVGS+ VPT + PPG A + SA R R+ G + P SLV T PGRI
Sbjct: 1211 SARQRVGSTFVPTPIRPPGTANLRSFCSARRDITRLKIGRHLSLPCSSLV----TIPGRI 1044
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMW-RRYS 119
S + + + S+S PGLL SKER +M A R G GM +RYS
Sbjct: 1043 SISSLSFNTPVKMEPPATPPFKSSIS-HPGLLTSKERMIIM*GDAVKSRMGTGMCVQRYS 867
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLSKXART-----WRYUSCAFTSPTRSILFC 166
S L F+CAEIG +G +A + + WR A +S RS LFC
Sbjct: 866 LTASMLYFNCAEIGIMGDPSATVPRMNFNIDW*CWR----APSSLIRSTLFC 723
>ref|XM_001951564.1| PREDICTED: Acyrthosiphon pisum similar to translation initiation
factor 2 gamma subunit (LOC100162437), mRNA
Length = 2127
Score = 62.4 bits (150), Expect = 5e-08, Method: Composition-based stats.
Identities = 63/164 (38%), Positives = 80/164 (48%), Gaps = 3/164 (1%)
Frame = -1
Query: 6 VGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRISTTCP 65
VGS +VPT +SPPG A ++ S + T+R G V P SL TKPGR S + P
Sbjct: 1224 VGSILVPTPISPPGTAKFNSFCSVYKDTIREKIG*QVNLPSLSL----DTKPGRTSISIP 1057
Query: 66 TLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMWR-RYSSRXST 124
T LR S S PGLL S +RTT+ R G +GIG++ YS S
Sbjct: 1056 TFKTPRKILPPATPPLRSSTS-HPGLLTSNDRTTIRRGGDVKSLSGIGIFL*IYSHNTSM 880
Query: 125 LRFSCAEIGTIGTFNAMLSKXARTWRYUSCAFTSP--TRSILFC 166
L S A+IG IG +A + C+ P T+SILFC
Sbjct: 879 LYLS*ADIGIIGAPSATVP-*TNFCICSCCSLACPSFTKSILFC 751
>dbj|AP006498.2| Cyanidioschyzon merolae DNA, chromosome 16, complete genome, complete
sequence
Length = 908485
Score = 62.4 bits (150), Expect = 5e-08, Method: Composition-based stats.
Identities = 69/167 (41%), Positives = 85/167 (50%), Gaps = 2/167 (1%)
Frame = +3
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S RV VGS +VPT MSPPG AYC++L SA T+ G +K P SL++ PGRI
Sbjct: 764898 SPRVSVGSILVPTPMSPPGTAYCNSLRSACIETIFEIIGWHLKFPSASLMV----IPGRI 765065
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGM-WRRYS 119
S PT RR + SPGL SK R ++R G R G G RYS
Sbjct: 765066 SIRSPT-RSTPCMIEPPATPPRRFSTSSPGLFTSKLRIIIIRGGDTKSRRGTGTCLMRYS 765242
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLSKXA-RTWRYUSCAFTSPTRSILF 165
+ STL + AEIGTIG +A + + Y A S T+SILF
Sbjct: 765243 TTTSTLYRNWAEIGTIGACSATVPRMKFLICSYCVRAADSSTKSILF 765383
>gb|AY439391.1| Armigeres subalbatus ASAP ID: 40885 translation initiation factor 2
gamma mRNA sequence
Length = 568
Score = 62.4 bits (150), Expect = 5e-08, Method: Composition-based stats.
Identities = 61/166 (36%), Positives = 81/166 (48%), Gaps = 4/166 (2%)
Frame = -2
Query: 5 RVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRISTTC 64
+VGS +VPT M PPG A C + SA T+ G V P SL+ TKPGR S +
Sbjct: 564 KVGSILVPTPMRPPGTANCRSFCSAYSDTILEKIG*QVNFPSASLL----TKPGRTSIS* 397
Query: 65 PTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMWRR-YSSRXS 123
PT+ +S + PGLL S +R T+ R + GIG++ YS S
Sbjct: 396 PTVKTPRKIEPPATPPF-KSFTSHPGLLTSNDRITINRGADVKFLGGIGIFLVIYSHNTS 220
Query: 124 TLRFSCAEIGTIGTFNAMLSKXARTWRYUSC---AFTSPTRSILFC 166
L SCAE+G +G +A + + SC A S T+SILFC
Sbjct: 219 MLYLSCAEMGMMGAPSATVP--CTNFTICSCCSFA*VSFTKSILFC 88
>dbj|AK312247.1| Homo sapiens cDNA, FLJ92541, highly similar to Homo sapiens
eukaryotic translation initiation factor 2, subunit 3
gamma, 52kDa (EIF2S3), mRNA
Length = 1432
Score = 62.4 bits (150), Expect = 5e-08, Method: Composition-based stats.
Identities = 67/168 (39%), Positives = 81/168 (48%), Gaps = 2/168 (1%)
Frame = -2
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R +VGS VPT + PPG AYC +L SA T+ GL + P SL T PG
Sbjct: 1065 SARHKVGSIFVPTPIRPPGAAYCRSLCSAKSDTILEKIGLHMSFPSLSL----ETIPGLT 898
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGM-WRRYS 119
S + PT LR S S PGLL SK+ T+ R G G+ + YS
Sbjct: 897 SISRPTFNTPFRILPPATPPLRSSTS-QPGLLTSKDLITISRGSEVKSLGGTGIFFTMYS 721
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILFC 166
S L FS AEIG +G +A + AR Y S A S T+SILFC
Sbjct: 720 QTTSILYFS*AEIGIMGAPSATVPWTNARICSYCSLA*LSFTKSILFC 577
>gb|AC068775.52| Homo sapiens 12 BAC RP11-291B21 (Roswell Park Cancer Institute Human
BAC Library) complete sequence
Length = 161001
Score = 62.0 bits (149), Expect = 6e-08, Method: Composition-based stats.
Identities = 66/168 (39%), Positives = 80/168 (47%), Gaps = 2/168 (1%)
Frame = -2
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R +VGS VPT + PPG AYC +L SA T+ L + P SL T PG
Sbjct: 91139 SARHKVGSIFVPTPIRPPGAAYCRSLCSAKSETILEKIDLHMSFPSLSL----ETIPGLT 90972
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGM-WRRYS 119
S + PT LR S S PGLL SK+ T+ R G G+ + YS
Sbjct: 90971 SVSWPTFNTPFRILPPATPPLRSSTS-QPGLLTSKDLITISRGSEVKSLGGTGIFFTMYS 90795
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILFC 166
S L FS AEIG +G +A + AR Y S A S T+SILFC
Sbjct: 90794 QTTSILYFS*AEIGIMGAPSATVPWTNARICSYCSLACLSFTKSILFC 90651
>ref|XM_001513134.1| PREDICTED: Ornithorhynchus anatinus hypothetical protein
LOC100082513 (LOC100082513), mRNA
Length = 1173
Score = 62.0 bits (149), Expect = 6e-08, Method: Composition-based stats.
Identities = 67/168 (39%), Positives = 83/168 (49%), Gaps = 2/168 (1%)
Frame = -2
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R VGS VPT M PPG AY +L SA T+ GL + P S T PGR
Sbjct: 806 SARHSVGSIFVPTPMRPPGAAY*RSLCSAKSDTILEKMGLHMSFPSLSF----ETIPGRT 639
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGM-WRRYS 119
S++ PT LR S S PGLL SK+R T+ R+G+G+ + YS
Sbjct: 638 SSSWPTFNTPLRILPPATPPLRSSTS-QPGLLTSKDRMTMSLGSDVKSRSGMGIFFTMYS 462
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILFC 166
S L S AE+G +G +A + AR Y S A+ S TRSILFC
Sbjct: 461 QTTSMLYLSWAEMGMMGAPSATVPWTNARICSYCSLAWLSFTRSILFC 318
>emb|CR685285.2|CNS0FRPT Tetraodon nigroviridis full-length cDNA
Length = 1682
Score = 62.0 bits (149), Expect = 6e-08, Method: Composition-based stats.
Identities = 59/156 (37%), Positives = 72/156 (46%), Gaps = 2/156 (1%)
Frame = -2
Query: 13 TAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRISTTCPTLMXXXX 72
T + PPG AYC +L SA T+ GL + P SL T PGR S + PTL
Sbjct: 1006 TPIRPPGAAYCRSLCSANNETILEKMGLHISFPSWSL----ETIPGRTSISWPTLRTPFR 839
Query: 73 XXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMW-RRYSSRXSTLRFSCAE 131
R S S PGL SK+ T+ R G G++ YS S L S AE
Sbjct: 838 ILPPATPPFRSSTS-HPGLFTSKDLITMSRGSDVKSLMGTGIFLTMYSQTTSMLYLSWAE 662
Query: 132 IGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILFC 166
+G +G +A + AR Y S A S TRSILFC
Sbjct: 661 MGMMGAPSATVPCTKARICSYCSLA*LSFTRSILFC 554
>emb|CR859308.1| Pongo abelii mRNA; cDNA DKFZp469N0112 (from clone DKFZp469N0112)
Length = 3404
Score = 62.0 bits (149), Expect = 7e-08, Method: Composition-based stats.
Identities = 66/168 (39%), Positives = 81/168 (48%), Gaps = 2/168 (1%)
Frame = -3
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R ++GS VPT + PPG AYC +L SA T+ GL + P SL T PG
Sbjct: 1410 SARHKMGSIFVPTPIRPPGAAYCRSLCSAKSDTILEKIGLHMSFPSLSL----ETIPGLT 1243
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGM-WRRYS 119
S + PT LR S S PGLL SK+ T+ R G G+ + YS
Sbjct: 1242 SISWPTFNTPFRILPPATPPLRSSTS-QPGLLTSKDLITISRGSEVKSLGGTGIFFTMYS 1066
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILFC 166
S L FS AEIG +G +A + AR Y S A S T+SILFC
Sbjct: 1065 QTTSILYFS*AEIGIMGAPSATVPWTNARICSYCSLA*LSFTKSILFC 922
>gb|EU208626.1| Armigeres subalbatus ASAP ID ACN-0187293 Suppressor of variegation
3-9 mRNA sequence
Length = 538
Score = 62.0 bits (149), Expect = 7e-08, Method: Composition-based stats.
Identities = 61/166 (36%), Positives = 81/166 (48%), Gaps = 4/166 (2%)
Frame = -3
Query: 5 RVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRISTTC 64
+VGS +VPT M PPG A C + SA T+ G V P SL+ TKPGR S +
Sbjct: 533 KVGSILVPTPMRPPGTANCRSFCSAYSDTILEKIG*QVNFPSASLL----TKPGRTSIS* 366
Query: 65 PTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMWRR-YSSRXS 123
PT+ +S + PGLL S +R T+ R + GIG++ YS S
Sbjct: 365 PTVKTPRKIEPPATPPF-KSFTSHPGLLTSNDRITINRGADVKFLGGIGIFLVIYSHNTS 189
Query: 124 TLRFSCAEIGTIGTFNAMLSKXARTWRYUSC---AFTSPTRSILFC 166
L SCAE+G +G +A + + SC A S T+SILFC
Sbjct: 188 MLYLSCAEMGMMGAPSATVP--CTNFTICSCCSFA*VSFTKSILFC 57
>ref|XM_644750.1| Entamoeba histolytica HM-1:IMSS eukaryotic translation initiation
factor 2 gamma subunit, putative, mRNA
Length = 1413
Score = 61.6 bits (148), Expect = 8e-08, Method: Composition-based stats.
Identities = 52/143 (36%), Positives = 72/143 (50%), Gaps = 1/143 (0%)
Frame = -2
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R GS +VPT ++PPG A S+ SA + V +GL V C +L + KPG I
Sbjct: 1064 SARQSDGSKLVPTPINPPGTAN*SSFLSA*SEIILVNNGLQV----C*FLLSLKLKPGLI 897
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMW-RRYS 119
S + P+ + +S PGLL+S ER V+R G G+ + YS
Sbjct: 896 SISSPSFNIPCDKVPPITPPI-KS*GKVPGLLISNERIIVIRGLTLKSLCGTGIE*QIYS 720
Query: 120 SRXSTLRFSCAEIGTIGTFNAML 142
S L F+CA+IG IG F+A+L
Sbjct: 719 HTTSILYFNCAQIGIIGAFSAIL 651
>gb|BT038032.1| Zea mays full-length cDNA clone ZM_BFb0208C04 mRNA, complete cds
Length = 1752
Score = 61.6 bits (148), Expect = 8e-08, Method: Composition-based stats.
Identities = 69/170 (40%), Positives = 86/170 (50%), Gaps = 4/170 (2%)
Frame = -2
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S RVRVGS VVPT +SPPG A S+ SA T+ G+ + P S + T PGR
Sbjct: 1142 SARVRVGSMVVPTPISPPGTANWSSFCSAYSETILE*IGVHLMFPVSSFM----TMPGRT 975
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGM-WRRYS 119
S TL L S S PGLL SKER T+M G + +G+G+ + RYS
Sbjct: 974 SIFWFTLRTPLRILPPATPPLISSTS-EPGLLTSKERITIMLGGEVKFLSGMGIFFTRYS 798
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLSKXARTWRYUSC---AFTSPTRSILFC 166
S L FS A+IGT G +A++ + SC A S RSILFC
Sbjct: 797 QITSMLYFSWADIGTTGAPSAIVP--WMNFWIASC*FIAALSWIRSILFC 654
>gb|AY104708.2| Zea mays PCO146692 mRNA sequence
Length = 1910
Score = 61.6 bits (148), Expect = 8e-08, Method: Composition-based stats.
Identities = 69/170 (40%), Positives = 86/170 (50%), Gaps = 4/170 (2%)
Frame = -2
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S RVRVGS VVPT +SPPG A S+ SA T+ G+ + P S + T PGR
Sbjct: 1294 SARVRVGSMVVPTPISPPGTANWSSFCSAYSETILE*IGVHLMFPVSSFM----TMPGRT 1127
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGM-WRRYS 119
S TL L S S PGLL SKER T+M G + +G+G+ + RYS
Sbjct: 1126 SIFWFTLRTPLRILPPATPPLISSTS-EPGLLTSKERITIMLGGEVKFLSGMGIFFTRYS 950
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLSKXARTWRYUSC---AFTSPTRSILFC 166
S L FS A+IGT G +A++ + SC A S RSILFC
Sbjct: 949 QITSMLYFSWADIGTTGAPSAIVP--WMNFWIASC*FIAALSWIRSILFC 806
>emb|AJ715869.1| Scoliopterix libatrix mRNA for eukaryotic translation initiation
factor 2 gamma subunit (eIF2g gene)
Length = 1472
Score = 61.2 bits (147), Expect = 9e-08, Method: Composition-based stats.
Identities = 67/170 (39%), Positives = 86/170 (50%), Gaps = 4/170 (2%)
Frame = -3
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R VGS +VPT M PPG AY S+ SA T+R G V P SL+ T+PGR
Sbjct: 1053 SARQSVGSILVPTPMRPPGTAY*SSFCSANSDTMREKMGRHVSLPSASLL----TRPGRT 886
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMWRR-YS 119
S + PT+ LR S S PGLL S ER T++R G +G G++ YS
Sbjct: 885 SISIPTVSTPCKIEPPATPPLRSSTS-QPGLLTSNERMTIIRGGDVKSLSGTGIFFVIYS 709
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLSKXARTWRYUSC---AFTSPTRSILFC 166
S L F+ A+IG +G +A + + SC A S T+SILFC
Sbjct: 708 HSTSILYFNWADIGIMGAPSATVP--CTNFTICSCCSLACPSFTKSILFC 565
>ref|XR_042844.1| PREDICTED: Bos taurus misc_RNA (LOC782293), miscRNA
Length = 1822
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 65/167 (38%), Positives = 79/167 (47%), Gaps = 1/167 (0%)
Frame = -3
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R +VGS VPT + PPG AY + SA T+ GL + P SL T PG
Sbjct: 1067 SARHKVGSIFVPTPIRPPGAAY*RS*CSAKSDTILEKIGLHMSFPSLSL----ETIPGLT 900
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMW-RRYS 119
S + PT LR S S PGLL SK+ T+ G G++ YS
Sbjct: 899 SISWPTFNTPFRILPPATPPLRSSTS-QPGLLTSKDLITISLGSEVKSLGGTGIFFTMYS 723
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLSKXARTWRYUSCAFTSPTRSILFC 166
S L FS AEIG IG +A + AR Y S A+ S T+SILFC
Sbjct: 722 QTTSILYFS*AEIGIIGAPSATVPTNARICSYCSLAWLSFTKSILFC 582
>ref|XM_001586215.1| Sclerotinia sclerotiorum 1980 hypothetical protein (SS1G_12843)
partial mRNA
Length = 1557
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 58/137 (42%), Positives = 68/137 (49%), Gaps = 1/137 (0%)
Frame = -2
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R RVGS VPT +SPPG AY ++LFS L V + + G PP S T PG I
Sbjct: 1199 SARQRVGSIRVPTPISPPGTAYFNSLFSELSVMILLKIG-*HLTPPFS---SRETIPGLI 1032
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMWR-RYS 119
S + P LM S+S +PGLL SKER T++ G GM R S
Sbjct: 1031 SISSPNLMTPCKILPPATPPFNSSIS-APGLLTSKERITIICGSMVKSLGGTGMLETRAS 855
Query: 120 SRXSTLRFSCAEIGTIG 136
S L FS AEIG IG
Sbjct: 854 LTASMLNFSWAEIGIIG 804
>emb|AJ010980.1|DDI010980 Dictyostelium discoideum mRNA for translation initiation factor 2
gamma, partial
Length = 974
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 62/163 (38%), Positives = 79/163 (48%), Gaps = 2/163 (1%)
Frame = -1
Query: 5 RVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRISTTC 64
RVGS VPT + PPG AY S+ SA R + G + P SL++ PGR S +
Sbjct: 620 RVGSIFVPTPIKPPGTAY*SSFSSAKREIILEKIGEHLILPSNSLLI----TPGRTSISS 453
Query: 65 PTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMW-RRYSSRXS 123
P L S + PGLL S ER +++R TGIG++ YS S
Sbjct: 452 PIFNAPFKIEPPATPPLISS-TREPGLLTSNERISIIRGSDVKSLTGIGIFLTMYSQMTS 276
Query: 124 TLRFSCAEIGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILF 165
L F AEIG IG F+A++ + Y SCA S T SILF
Sbjct: 275 ILYFI*AEIGMIGAFSAIVP*MNFKI*PYCSCAAASFTISILF 147
>ref|XR_027832.2| PREDICTED: Bos taurus misc_RNA (LOC783421), miscRNA
Length = 1449
Score = 60.8 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 67/168 (39%), Positives = 80/168 (47%), Gaps = 2/168 (1%)
Frame = -3
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R +VGS VPT + PPG AY +L SA T+ GL + P SL T PG
Sbjct: 1057 SARHKVGSIFVPTPIRPPGAAY*RSLCSAKSDTILEKIGLHMSFPSLSL----ETIPGLT 890
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGM-WRRYS 119
S + PT LR S S PGLL SK+ T+ G GM + YS
Sbjct: 889 SISWPTFNTPFRILPPATPPLRSSTS-QPGLLTSKDLITISLGSEVKSLGGTGMFFTMYS 713
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILFC 166
S L FS AEIG IG +A + AR Y S A+ S T+SILFC
Sbjct: 712 QTTSILYFS*AEIGIIGAPSATVP*TNARICSYCSLAWLSFTKSILFC 569
>emb|BX814672.1|CNS0AC08 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB88ZG07 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 1558
Score = 60.8 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 61/143 (42%), Positives = 75/143 (52%), Gaps = 1/143 (0%)
Frame = -3
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S RVRVGS VVPT + PPG A S+ SA +R G+ + P SLV T PGRI
Sbjct: 1145 SARVRVGSIVVPTPIRPPGTAN*SSFCSA*SEMMRE*IGVHFELPRSSLV----TIPGRI 978
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGM-WRRYS 119
S TL L S S PGLL SK+R T++ G + +GIG+ + YS
Sbjct: 977 SINWLTLKTPRRILPPATPPLISSTS-*PGLLTSKDRITIIFGGDTKFLSGIGIFFTMYS 801
Query: 120 SRXSTLRFSCAEIGTIGTFNAML 142
S L FSCAE GTIG +A +
Sbjct: 800 HTTSMLYFSCAETGTIGAASATV 732
>emb|AJ715866.1| Locusta migratoria mRNA for eukaryotic translation initiation factor
2 gamma subunit (eIF2g gene)
Length = 1834
Score = 60.8 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 67/167 (40%), Positives = 79/167 (47%), Gaps = 2/167 (1%)
Frame = -2
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R VGS +VPT M PPG A CS+ S T+R G V+RP SL T+PGR
Sbjct: 1200 SARHSVGSILVPTPMRPPGTANCSSFCSV*SDTMREKMGRHVRRPSLSL----DTRPGRT 1033
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMW-RRYS 119
S + PT R S S PGLL S +R T+ R G G G+ YS
Sbjct: 1032 SISMPTFSTPLRILPPATPPFRSSTS-EPGLLTSNDRMTMRRGGLVKSLAGTGILVVMYS 856
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILF 165
S L FSCAE+G G +A + Y S A S TRSILF
Sbjct: 855 HSTSMLYFSCAEMGITGAPSATVPCTNFIICSYCSLACPSLTRSILF 715
>ref|NM_100298.2| Arabidopsis thaliana EIF2 GAMMA (eukaryotic translation initiation
factor 2 gamma subunit); translation factor, nucleic acid
binding (EIF2 GAMMA) mRNA, complete cds
Length = 1793
Score = 60.8 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 61/143 (42%), Positives = 75/143 (52%), Gaps = 1/143 (0%)
Frame = -3
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S RVRVGS VVPT + PPG A S+ SA +R G+ + P SLV T PGRI
Sbjct: 1230 SARVRVGSIVVPTPIRPPGTAN*SSFCSA*SEMMRE*IGVHFELPRSSLV----TIPGRI 1063
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMW-RRYS 119
S TL L S S PGLL SK+R T++ G + +GIG++ YS
Sbjct: 1062 SINWLTLKTPRRILPPATPPLISSTS-*PGLLTSKDRITIIFGGDTKFLSGIGIFLTMYS 886
Query: 120 SRXSTLRFSCAEIGTIGTFNAML 142
S L FSCAE GTIG +A +
Sbjct: 885 HTTSMLYFSCAETGTIGAASATV 817
>gb|AY092973.1| Arabidopsis thaliana strong similarity to initiation factor eIF-2,
gb|U37354 from S (At1g04170) mRNA, complete cds
Length = 1681
Score = 60.8 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 61/143 (42%), Positives = 75/143 (52%), Gaps = 1/143 (0%)
Frame = -3
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S RVRVGS VVPT + PPG A S+ SA +R G+ + P SLV T PGRI
Sbjct: 1229 SARVRVGSIVVPTPIRPPGTAN*SSFCSA*SEMMRE*IGVHFELPRSSLV----TIPGRI 1062
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMW-RRYS 119
S TL L S S PGLL SK+R T++ G + +GIG++ YS
Sbjct: 1061 SINWLTLKTPRRILPPATPPLISSTS-*PGLLTSKDRITIIFGGDTKFLSGIGIFLTMYS 885
Query: 120 SRXSTLRFSCAEIGTIGTFNAML 142
S L FSCAE GTIG +A +
Sbjct: 884 HTTSMLYFSCAETGTIGAASATV 816
>gb|AF353097.1|AF353097 Arabidopsis thaliana protein synthesis initiation factor eIF2 gamma
mRNA, complete cds
Length = 1616
Score = 60.8 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 61/143 (42%), Positives = 75/143 (52%), Gaps = 1/143 (0%)
Frame = -1
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S RVRVGS VVPT + PPG A S+ SA +R G+ + P SLV T PGRI
Sbjct: 1139 SARVRVGSIVVPTPIRPPGTAN*SSFCSA*SEMMRE*IGVHFELPRSSLV----TIPGRI 972
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMW-RRYS 119
S TL L S S PGLL SK+R T++ G + +GIG++ YS
Sbjct: 971 SINWLTLKTPRRILPPATPPLISSTS-*PGLLTSKDRITIIFGGDTKFLSGIGIFLTMYS 795
Query: 120 SRXSTLRFSCAEIGTIGTFNAML 142
S L FSCAE GTIG +A +
Sbjct: 794 HTTSMLYFSCAETGTIGAASATV 726
>gb|BT002095.1| Arabidopsis thaliana strong similarity to initiation factor eIF-2,
gb|U37354 from S (At1g04170) mRNA, complete cds
Length = 1465
Score = 60.8 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 61/143 (42%), Positives = 75/143 (52%), Gaps = 1/143 (0%)
Frame = -3
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S RVRVGS VVPT + PPG A S+ SA +R G+ + P SLV T PGRI
Sbjct: 1031 SARVRVGSIVVPTPIRPPGTAN*SSFCSA*SEMMRE*IGVHFELPRSSLV----TIPGRI 864
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMW-RRYS 119
S TL L S S PGLL SK+R T++ G + +GIG++ YS
Sbjct: 863 SINWLTLKTPRRILPPATPPLISSTS-*PGLLTSKDRITIIFGGDTKFLSGIGIFLTMYS 687
Query: 120 SRXSTLRFSCAEIGTIGTFNAML 142
S L FSCAE GTIG +A +
Sbjct: 686 HTTSMLYFSCAETGTIGAASATV 618
>gb|AY648723.1| Danio rerio eukaryotic translation initiation factor 2 gamma mRNA,
complete cds
Length = 2015
Score = 60.8 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 64/163 (39%), Positives = 78/163 (47%), Gaps = 2/163 (1%)
Frame = -2
Query: 6 VGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRISTTCP 65
VGS +VPT + PPG AY +L SA T+ GL + P S T PG S++CP
Sbjct: 1336 VGSILVPTPIRPPGAAY*RSLCSAKSETILEKMGLHINFPSWSF----ETIPGLTSSSCP 1169
Query: 66 TLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIG-MWRRYSSRXST 124
T R S S PGLL S + T+ R RTG G ++ YS S
Sbjct: 1168 TFRTPLRMLPPATPPFRSSTS-QPGLLTSNDLITISRGSEVKSRTGTGILFTMYSQTTSM 992
Query: 125 LRFSCAEIGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILFC 166
L S AEIG IG +A + AR Y S A S T+SILFC
Sbjct: 991 LYLSWAEIGIIGAPSATVPCTNARICSYCSLA*LSFTKSILFC 863
>gb|BC055248.1| Danio rerio eukaryotic translation initiation factor 2, subunit 3
gamma, mRNA (cDNA clone MGC:63805 IMAGE:3815485),
complete cds
Length = 1768
Score = 60.8 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 64/163 (39%), Positives = 78/163 (47%), Gaps = 2/163 (1%)
Frame = -3
Query: 6 VGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRISTTCP 65
VGS +VPT + PPG AY +L SA T+ GL + P S T PG S++CP
Sbjct: 1070 VGSILVPTPIRPPGAAY*RSLCSAKSETILEKMGLHINFPSWSF----ETIPGLTSSSCP 903
Query: 66 TLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIG-MWRRYSSRXST 124
T R S S PGLL S + T+ R RTG G ++ YS S
Sbjct: 902 TFRTPLRMLPPATPPFRSSTS-QPGLLTSNDLITISRGSEVKSRTGTGILFTMYSQTTSM 726
Query: 125 LRFSCAEIGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILFC 166
L S AEIG IG +A + AR Y S A S T+SILFC
Sbjct: 725 LYLSWAEIGIIGAPSATVPCTNARICSYCSLA*LSFTKSILFC 597
>emb|AJ715867.1| Aphis sambuci eIF2g gene for eukaryotic translation initiation factor
2 gamma subunit, exons 1-7
Length = 4605
Score = 60.8 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 63/164 (38%), Positives = 80/164 (48%), Gaps = 3/164 (1%)
Frame = -3
Query: 6 VGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRISTTCP 65
VGS++VPT +SPPG A ++ S + T+R G V P L TKPGR S P
Sbjct: 3928 VGSTLVPTPISPPGTAKFNSFCSVYKDTIREKIG*QVNSPSLPL----DTKPGRTSIPIP 3761
Query: 66 TLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMWR-RYSSRXST 124
TL LR S S PGLL S +RTT+ R G +GIG++ YS S
Sbjct: 3760 TLKTPRRILPPATPPLRSSTS-HPGLLTSNDRTTIRRGGDVKSLSGIGIFL*IYSHNTSM 3584
Query: 125 LRFSCAEIGTIGTFNAMLSKXARTWRYUSCAFTSP--TRSILFC 166
L S A+IG IG +A + C+ P T+SILFC
Sbjct: 3583 LYLS*ADIGIIGAPSATVP-*TNFCICSCCSLA*PSFTKSILFC 3455
>ref|XM_770662.1| Cryptococcus neoformans var. neoformans B-3501A hypothetical protein
(CNBD4840) partial mRNA
Length = 1422
Score = 60.8 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 64/167 (38%), Positives = 80/167 (47%), Gaps = 1/167 (0%)
Frame = -2
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R R GS+ VPT + PPG A SA R T+R G V+ P SLV+R PGRI
Sbjct: 1058 SARQRAGSTRVPTPIRPPGTAN*RWFCSAWRETIRDRKGRQVQIPLASLVIR----PGRI 891
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMWRRYSS 120
ST+ P L S +P+PGLL S +R T +R A G M + ++
Sbjct: 890 STSWPILKTPCKILPPATPPFNSS-TPAPGLLTSNDRITTIRGSALKS*LGGAMLQIAAT 714
Query: 121 RXSTLRFSCAEIGTIGTFNAML-SKXARTWRYUSCAFTSPTRSILFC 166
S L S AE G IG A++ S S A S T+SILFC
Sbjct: 713 TASMLNLSWAETGMIGARRAVVPSTNFLILSQCSIASLSLTKSILFC 573
>ref|XM_570286.1| Cryptococcus neoformans var. neoformans JEC21 eukaryotic translation
initiation factor 2 gamma (CND01480) partial mRNA
Length = 1666
Score = 60.8 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 64/167 (38%), Positives = 80/167 (47%), Gaps = 1/167 (0%)
Frame = -3
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R R GS+ VPT + PPG A SA R T+R G V+ P SLV+R PGRI
Sbjct: 1205 SARQRAGSTRVPTPIRPPGTAN*RWFCSAWRETIRDRKGRQVQIPLASLVIR----PGRI 1038
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMWRRYSS 120
ST+ P L S +P+PGLL S +R T +R A G M + ++
Sbjct: 1037 STSWPILKTPCKILPPATPPFNSS-TPAPGLLTSNDRITTIRGSALKS*LGGAMLQIAAT 861
Query: 121 RXSTLRFSCAEIGTIGTFNAML-SKXARTWRYUSCAFTSPTRSILFC 166
S L S AE G IG A++ S S A S T+SILFC
Sbjct: 860 TASMLNLSWAETGMIGARRAVVPSTNFLILSQCSIASLSLTKSILFC 720
>ref|XR_023980.1| PREDICTED: Pan troglodytes similar to translation initiation factor
eIF-2 gamma subunit (LOC455519), mRNA
Length = 1700
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 66/168 (39%), Positives = 80/168 (47%), Gaps = 2/168 (1%)
Frame = -1
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R +VG VPT + PPG AYC +L SA T+ GL + P SL T PG
Sbjct: 1076 SARQKVG*IFVPTPIRPPGAAYCRSLCSAKSDTILEKIGLHMSFPSLSL----ETIPGLT 909
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGM-WRRYS 119
S + PT LR S S PGLL SK+ T+ R G G+ + YS
Sbjct: 908 SISWPTFNTPFRILPPATPPLRSSTS-QPGLLTSKDLITISRGSEVKSLGGTGIFFTMYS 732
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILFC 166
S L FS AEIG +G +A + AR Y S A S T+SILFC
Sbjct: 731 QTTSILYFS*AEIGIMGAPSATVPWTNARICSYCSLA*LSFTKSILFC 588
>ref|XR_011106.1| PREDICTED: Macaca mulatta similar to eukaryotic translation
initiation factor 2, subunit 3 gamma, 52kDa (LOC700113),
mRNA
Length = 2135
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 66/168 (39%), Positives = 80/168 (47%), Gaps = 2/168 (1%)
Frame = -2
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R +VGS VPT + PPG AYC +L SA T+ GL + P SL T PG
Sbjct: 1078 SARHKVGSIFVPTPIRPPGAAYCRSLCSAKSDTILEKIGLHMSFPSLSL----ETIPGLT 911
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGM-WRRYS 119
S + PT LR S S PGLL SK+ T+ R G G+ + YS
Sbjct: 910 SISWPTFNTPFRILPPATPPLRSSTS-QPGLLTSKDLITISRGSEVKSLGGTGIFFTMYS 734
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILFC 166
S FS AEIG +G +A + AR Y S A S T+SILFC
Sbjct: 733 QTTSISYFS*AEIGIMGAPSATVPWTNARICSYCSLA*LSFTKSILFC 590
>emb|CR730006.2|CNS0GQ7W Tetraodon nigroviridis full-length cDNA
Length = 1714
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 66/168 (39%), Positives = 80/168 (47%), Gaps = 2/168 (1%)
Frame = -1
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R VGS +VPT + PPG AYC +L SA T+ GL + P SL T PGR
Sbjct: 1069 SARQSVGSILVPTPIRPPGAAYCRSLCSANNETILEKMGLHISFPSWSL----ETIPGRT 902
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMW-RRYS 119
S + PTL R S S PGL SK+ T+ R G G++ YS
Sbjct: 901 SISWPTLRTPFRILPPATPPFRSSTS-HPGLFTSKDLITMSRGSDVKSLMGTGIFLTMYS 725
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILFC 166
S L S AE+G +G +A + AR Y S A S TRSILFC
Sbjct: 724 QTTSMLYLSWAEMGMMGAPSATVPCTKARICSYCSLA*LSFTRSILFC 581
>gb|AC166553.2| Nectria haematococca clone JGIAYWI-9O2, complete sequence
Length = 38247
Score = 60.1 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 59/145 (40%), Positives = 74/145 (51%), Gaps = 1/145 (0%)
Frame = -2
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R RVGS VPT M PPG AY +L S LR T R+ G+ ++ P S T PGRI
Sbjct: 18281 SARQRVGSIRVPTPMRPPGTAYLRSLASELRETTRLKMGVHLRAPLSS----RDTIPGRI 18114
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMWRRYSS 120
S + P+L LR S+S +PGLL SK+R T+M R G GM +S
Sbjct: 18113 SISSPSLTTP*RIEPPATPPLRSSIS-APGLLTSKDRMTIM*GSMLKSRGGTGMVLTMAS 17937
Query: 121 -RXSTLRFSCAEIGTIGTFNAMLSK 144
S L S AE+G G F A + +
Sbjct: 17936 LTASMLNLSWAEMGMTGDFPATVPR 17862
>emb|CR684400.2|CNS0FR18 Tetraodon nigroviridis full-length cDNA
Length = 1811
Score = 59.7 bits (143), Expect = 3e-07, Method: Composition-based stats.
Identities = 66/168 (39%), Positives = 80/168 (47%), Gaps = 2/168 (1%)
Frame = -3
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R VGS +VPT + PPG AYC +L SA T+ GL + P SL T PGR
Sbjct: 1200 SARQSVGSILVPTPIRPPGAAYCRSLCSANNETILEKMGLHISFPSWSL----ETIPGRT 1033
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMW-RRYS 119
S + PTL R S S PGL SK+ T+ R G G++ YS
Sbjct: 1032 SISWPTLRTPFRILPPATPPFRSSTS-HPGLFTSKDLITMSRGSDVKSLMGTGIFLTMYS 856
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILFC 166
S L S AE+G +G +A + AR Y S A S TRSILFC
Sbjct: 855 QTTSMLYLSWAEMGMMGAPSATVPCTKARICSYCSLA*LSFTRSILFC 712
>ref|XM_675022.1| Plasmodium berghei strain ANKA eukaryotic translation initiation
factor 2 gamma subunit (PB000776.00.0) partial mRNA
Length = 1398
Score = 59.7 bits (143), Expect = 3e-07, Method: Composition-based stats.
Identities = 61/170 (35%), Positives = 76/170 (44%), Gaps = 4/170 (2%)
Frame = -2
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S RVR+GS VPT ++PPG AY LFSA + GL V P S + PG I
Sbjct: 1034 SARVRIGSIRVPTPINPPGTAYFKLLFSANIDNILEIIGLQVISPLSSFDI----IPGLI 867
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMWRR-YS 119
S PT S+S SPGLL SK+ T++ GI +W YS
Sbjct: 866 SI*SPTFNTPCKMLPPATPPCNVSIS-SPGLLTSKDLITIICGDEIKSLLGILIWVTIYS 690
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLSKXARTWRYUSCAF---TSPTRSILFC 166
S L F A IG IG +A + + + SC F +S S LFC
Sbjct: 689 HTTSILYFKTALIGIIGALSAAVPE--TKFLISSCCFNACSSFINSTLFC 546
>gb|BC112875.1| Bos taurus eukaryotic translation initiation factor 2, subunit 3
gamma, 52kDa, mRNA (cDNA clone MGC:137622 IMAGE:8174590),
complete cds
Length = 1804
Score = 59.7 bits (143), Expect = 3e-07, Method: Composition-based stats.
Identities = 66/168 (39%), Positives = 80/168 (47%), Gaps = 2/168 (1%)
Frame = -1
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R +VGS VPT + PPG AY +L SA T+ GL + P SL T PG
Sbjct: 1066 SARHKVGSIFVPTPIRPPGAAY*RSLCSAKSDTILEKIGLHMSFPSLSL----ETIPGLT 899
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGM-WRRYS 119
S + PT LR S S PGLL SK+ T+ G G+ + YS
Sbjct: 898 SISWPTFNTPFRILPPATPPLRSSTS-QPGLLTSKDLITISLGSEVKSLGGTGIFFTMYS 722
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILFC 166
S L FS AEIG IG +A + AR Y S A+ S T+SILFC
Sbjct: 721 QTTSILYFS*AEIGIIGAPSATVP*TNARICSYCSLAWLSFTKSILFC 578
>gb|DQ446523.1| Arabidopsis thaliana clone pENTR221-At2g18720 eukaryotic translation
initiation factor 2 subunit 3/eIF2S3/eIF-2-gamma
(At2g18720) mRNA, complete cds
Length = 1398
Score = 59.7 bits (143), Expect = 3e-07, Method: Composition-based stats.
Identities = 64/168 (38%), Positives = 80/168 (47%), Gaps = 3/168 (1%)
Frame = -2
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S RV VGS +VP + PPG A S+ SA +RV G+ + P S ++ PG I
Sbjct: 1025 SPRVSVGSMLVPIPIKPPGTAN*SSFCSAYNEVIRV*MGVHLVSPFSSFLV----IPGLI 858
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMW-RRYS 119
S CPT S S PGLL SKER T++ G TG G++ YS
Sbjct: 857 SIICPTFKTP*RILPPATPPFIPS*S-EPGLLTSKERITIILGGDTKSLTGSGIFLTMYS 681
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLSKXARTWRYUSCAFTSPT--RSILF 165
+ S L FSCAE GTIG +A + W C S + RSILF
Sbjct: 680 HKTSMLYFSCAETGTIGAPSAFVFV-INLWMSSCCLIASFSWMRSILF 540
>gb|DQ446522.1| Arabidopsis thaliana clone pENTR221-At2g18720 eukaryotic
translation initiation factor 2 subunit
3/eIF2S3/eIF-2-gamma (At2g18720) mRNA, complete cds
Length = 1311
Score = 59.7 bits (143), Expect = 3e-07, Method: Composition-based stats.
Identities = 64/168 (38%), Positives = 80/168 (47%), Gaps = 3/168 (1%)
Frame = -2
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S RV VGS +VP + PPG A S+ SA +RV G+ + P S ++ PG I
Sbjct: 938 SPRVSVGSMLVPIPIKPPGTAN*SSFCSAYNEVIRV*MGVHLVSPFSSFLV----IPGLI 771
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMW-RRYS 119
S CPT S S PGLL SKER T++ G TG G++ YS
Sbjct: 770 SIICPTFKTP*RILPPATPPFIPS*S-EPGLLTSKERITIILGGDTKSLTGSGIFLTMYS 594
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLSKXARTWRYUSCAFTSPT--RSILF 165
+ S L FSCAE GTIG +A + W C S + RSILF
Sbjct: 593 HKTSMLYFSCAETGTIGAPSAFVFV-INLWMSSCCLIASFSWMRSILF 453
>ref|NM_127428.1| Arabidopsis thaliana translation factor, nucleic acid binding
(AT2G18720) mRNA, complete cds
Length = 1465
Score = 59.7 bits (143), Expect = 3e-07, Method: Composition-based stats.
Identities = 64/168 (38%), Positives = 80/168 (47%), Gaps = 3/168 (1%)
Frame = -2
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S RV VGS +VP + PPG A S+ SA +RV G+ + P S ++ PG I
Sbjct: 1092 SPRVSVGSMLVPIPIKPPGTAN*SSFCSAYNEVIRV*MGVHLVSPFSSFLV----IPGLI 925
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMW-RRYS 119
S CPT S S PGLL SKER T++ G TG G++ YS
Sbjct: 924 SIICPTFKTP*RILPPATPPFIPS*S-EPGLLTSKERITIILGGDTKSLTGSGIFLTMYS 748
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLSKXARTWRYUSCAFTSPT--RSILF 165
+ S L FSCAE GTIG +A + W C S + RSILF
Sbjct: 747 HKTSMLYFSCAETGTIGAPSAFVFV-INLWMSSCCLIASFSWMRSILF 607
>ref|XM_537983.2| PREDICTED: Canis familiaris similar to eukaryotic translation
initiation factor 2, subunit 3, structural gene X-linked
(LOC480866), mRNA
Length = 1791
Score = 59.7 bits (143), Expect = 3e-07, Method: Composition-based stats.
Identities = 67/168 (39%), Positives = 80/168 (47%), Gaps = 2/168 (1%)
Frame = -2
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R +VGS VPT + PPG AY +L SA T+ GL + P SL T PG
Sbjct: 1061 SARHKVGSIFVPTPIRPPGAAY*RSLCSAKSDTILEKIGLHMSFPSLSL----ETIPGLT 894
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGM-WRRYS 119
S + PT LR S S PGLL SK+ T+ R G G+ + YS
Sbjct: 893 SISWPTFNTPFRILPPATPPLRSSTS-QPGLLTSKDLITISRGSEVKSLGGTGIFFTMYS 717
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILFC 166
S L FS AEIG IG +A + AR Y S A S T+SILFC
Sbjct: 716 QTTSILYFS*AEIGIIGAPSATVPCTNARICSYCSLA*LSFTKSILFC 573
>ref|XM_001630853.1| Nematostella vectensis predicted protein (NEMVEDRAFT_v1g187927)
partial mRNA
Length = 2239
Score = 59.7 bits (143), Expect = 3e-07, Method: Composition-based stats.
Identities = 63/164 (38%), Positives = 77/164 (46%), Gaps = 2/164 (1%)
Frame = -3
Query: 5 RVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRISTTC 64
RVGS +VPT + PPG AY + SA R +R GL P SL T PG S +C
Sbjct: 1124 RVGSILVPTPIRPPGAAY*RSFCSANREMMRE*IGLHCSLPSLSL----DTIPGLTSISC 957
Query: 65 PTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMW-RRYSSRXS 123
P R S S PGL S + T+ R TG G++ + YS S
Sbjct: 956 PIFNTPLRMLPPATPPFRSSTS-HPGLFTSNDLITMSRGCEVKSLTGTGIFLQMYSQITS 780
Query: 124 TLRFSCAEIGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILFC 166
L S AE+G G +AM+ R W Y S A+ S TRSILFC
Sbjct: 779 MLYLSWAEMGITGAPSAMVPCTNFRIWSY*SFAWLSLTRSILFC 648
>gb|DQ120623.1| Hylobates lar eFI-2-gamma gene, partial cds
Length = 1413
Score = 59.3 bits (142), Expect = 4e-07, Method: Composition-based stats.
Identities = 65/168 (38%), Positives = 79/168 (47%), Gaps = 2/168 (1%)
Frame = -2
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R +VGS VPT + PPG AYC +L S T+ GL + P SL T PG
Sbjct: 1052 SARHKVGSIFVPTPIRPPGAAYCRSLCSVKSETILEKIGLHMSFPSLSL----ETIPGLT 885
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGM-WRRYS 119
S + PT LR S S P LL SK+ T+ R G G+ + YS
Sbjct: 884 SVSWPTFNTPFRILPPATPPLRSSTS-QPSLLTSKDLITISRGSEVKSLGGTGIFFTMYS 708
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILFC 166
S L FS AEIG +G +A + AR Y S A S T+SILFC
Sbjct: 707 QTTSILYFS*AEIGIMGASSATVPWTNARICSYCSLA*FSFTKSILFC 564
>gb|BC158736.1| Rattus norvegicus eukaryotic translation initiation factor 2, subunit
3, structural gene X-linked, mRNA (cDNA clone MGC:187904
IMAGE:9098876), complete cds
Length = 1755
Score = 59.3 bits (142), Expect = 4e-07, Method: Composition-based stats.
Identities = 66/168 (39%), Positives = 79/168 (47%), Gaps = 2/168 (1%)
Frame = -3
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R VGS VPT + PPG AY +L SA T+ GL + P SL T PG
Sbjct: 1057 SARHNVGSIFVPTPIRPPGAAY*RSLCSAKSDTILEKIGLHISFPSLSL----ETIPGLT 890
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMWRR-YS 119
S + PT LR S S PGLL SK+R T+ R G G++ YS
Sbjct: 889 SISWPTFNTPFKILPPATPPLRSSTS-QPGLLTSKDRITISRGSEVKSLRGTGIFFTIYS 713
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILFC 166
S L F+ AEIG IG +A + A Y S A S T+SILFC
Sbjct: 712 QTTSILYFN*AEIGIIGAPSATVPCTNASICSYCSLA*LSFTKSILFC 569
>ref|XM_001712477.1| Hemiselmis andersenii eif2G (HAN_3g394) mRNA, complete cds
Length = 1302
Score = 59.3 bits (142), Expect = 4e-07, Method: Composition-based stats.
Identities = 59/172 (34%), Positives = 80/172 (46%), Gaps = 9/172 (5%)
Frame = -2
Query: 4 VRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRISTT 63
V+VGS VP ++PPG+AY FSALR +RVF G + P LV+ PG IS
Sbjct: 947 VKVGSIFVPIPINPPGIAYFKGFFSALREQIRVFMG*QIISPFLVLVV----IPGLISIF 780
Query: 64 CPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAF--SWRTGIGMWRRYSSR 121
P R+S+ PGLL+S + T+ + G F + + + S R
Sbjct: 779 SPIHKIPLIIVPPNTPP*RKSIL-QPGLLISND-LTINKNGDFLKNLEGKVISLTKNSIR 606
Query: 122 XSTLRFSCAEIGTIGTF-------NAMLSKXARTWRYUSCAFTSPTRSILFC 166
S L F CA+IG I F N ++S W + AF T+S LFC
Sbjct: 605 ISILTFLCADIGIITEFSK*DFWINFLIS-----W*FKR-AFAFETKSTLFC 468
>gb|CP000883.1| Hemiselmis andersenii chromosome 3, complete sequence; nucleomorph
Length = 179593
Score = 59.3 bits (142), Expect = 4e-07, Method: Composition-based stats.
Identities = 59/172 (34%), Positives = 80/172 (46%), Gaps = 9/172 (5%)
Frame = -3
Query: 4 VRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRISTT 63
V+VGS VP ++PPG+AY FSALR +RVF G + P LV+ PG IS
Sbjct: 29900 VKVGSIFVPIPINPPGIAYFKGFFSALREQIRVFMG*QIISPFLVLVV----IPGLISIF 29733
Query: 64 CPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAF--SWRTGIGMWRRYSSR 121
P R+S+ PGLL+S + T+ + G F + + + S R
Sbjct: 29732 SPIHKIPLIIVPPNTPP*RKSIL-QPGLLISND-LTINKNGDFLKNLEGKVISLTKNSIR 29559
Query: 122 XSTLRFSCAEIGTIGTF-------NAMLSKXARTWRYUSCAFTSPTRSILFC 166
S L F CA+IG I F N ++S W + AF T+S LFC
Sbjct: 29558 ISILTFLCADIGIITEFSK*DFWINFLIS-----W*FKR-AFAFETKSTLFC 29421
>ref|XM_001901211.1| Brugia malayi eIF2 gamma partial mRNA
Length = 1446
Score = 59.3 bits (142), Expect = 4e-07, Method: Composition-based stats.
Identities = 64/168 (38%), Positives = 75/168 (44%), Gaps = 2/168 (1%)
Frame = -2
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R VGS +VPT + PPG AYC+ SA T+R G P T PG
Sbjct: 1076 SPRHNVGSILVPTPIKPPGTAYCN*FCSANNETIRENIGRHCTFPSVDF----ETIPGLT 909
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMWRR-YS 119
S +CP R S S PGL SKER T+ R R G G + + YS
Sbjct: 908 SISCPIRRIPRKIDPPATPPFRFSTS-EPGLFTSKERITINRAADEKSRRGTGTFLQIYS 732
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILFC 166
STL FS A+IG IG +A + R Y S A S SILFC
Sbjct: 731 QTTSTLYFS*ADIGIIGAPSATVPCTKLRICSYCSLA*LSLIISILFC 588
>gb|BC139235.1| Mus musculus eukaryotic translation initiation factor 2, subunit 3,
structural gene X-linked, mRNA (cDNA clone MGC:170862
IMAGE:8862257), complete cds
Length = 1925
Score = 58.9 bits (141), Expect = 5e-07, Method: Composition-based stats.
Identities = 68/168 (40%), Positives = 79/168 (47%), Gaps = 2/168 (1%)
Frame = -1
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R +VGS VPT M PPG AY +L SA T+ GL + P SL T PG
Sbjct: 1070 SARHKVGSIFVPTPMRPPGAAY*RSLCSAKSDTILEKIGLHMSFPSLSL----ETIPGLT 903
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMWRR-YS 119
S + PT LR S S PGLL S + T+ R G G++ YS
Sbjct: 902 SISWPTFNTPFRILPPATPPLRSSTS-QPGLLTSNDLMTMRRGSEVKSLGGTGIFFTIYS 726
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILFC 166
S L FS AEIG IG +A + AR Y S A S TRSILFC
Sbjct: 725 QTTSILYFS*AEIGIIGAPSATVPCTNARICSYCSLA*LSFTRSILFC 582
>gb|BC139234.1| Mus musculus eukaryotic translation initiation factor 2, subunit 3,
structural gene X-linked, mRNA (cDNA clone MGC:170861
IMAGE:8862256), complete cds
Length = 1925
Score = 58.9 bits (141), Expect = 5e-07, Method: Composition-based stats.
Identities = 68/168 (40%), Positives = 79/168 (47%), Gaps = 2/168 (1%)
Frame = -1
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R +VGS VPT M PPG AY +L SA T+ GL + P SL T PG
Sbjct: 1070 SARHKVGSIFVPTPMRPPGAAY*RSLCSAKSDTILEKIGLHMSFPSLSL----ETIPGLT 903
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMWRR-YS 119
S + PT LR S S PGLL S + T+ R G G++ YS
Sbjct: 902 SISWPTFNTPFRILPPATPPLRSSTS-QPGLLTSNDLMTMRRGSEVKSLGGTGIFFTIYS 726
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILFC 166
S L FS AEIG IG +A + AR Y S A S TRSILFC
Sbjct: 725 QTTSILYFS*AEIGIIGAPSATVPCTNARICSYCSLA*LSFTRSILFC 582
>ref|XM_001481129.1| PREDICTED: Mus musculus similar to translation initiation factor
eIF-2 gamma subunit (LOC100048746), mRNA
Length = 1860
Score = 58.9 bits (141), Expect = 5e-07, Method: Composition-based stats.
Identities = 68/168 (40%), Positives = 79/168 (47%), Gaps = 2/168 (1%)
Frame = -2
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R +VGS VPT M PPG AY +L SA T+ GL + P SL T PG
Sbjct: 1040 SARHKVGSIFVPTPMRPPGAAY*RSLCSAKSDTILEKIGLHMSFPSLSL----ETIPGLT 873
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMWRR-YS 119
S + PT LR S S PGLL S + T+ R G G++ YS
Sbjct: 872 SISWPTFNTPFRILPPATPPLRSSTS-QPGLLTSNDLMTMRRGSEVKSLGGTGIFFTIYS 696
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILFC 166
S L FS AEIG IG +A + AR Y S A S TRSILFC
Sbjct: 695 QTTSILYFS*AEIGIIGAPSATVPCTNARICSYCSLA*LSFTRSILFC 552
>ref|XM_001472848.1| PREDICTED: Mus musculus similar to translation initiation factor
eIF-2 gamma subunit (LOC100039419), mRNA
Length = 3626
Score = 58.9 bits (141), Expect = 5e-07, Method: Composition-based stats.
Identities = 68/168 (40%), Positives = 79/168 (47%), Gaps = 2/168 (1%)
Frame = -1
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R +VGS VPT M PPG AY +L SA T+ GL + P SL T PG
Sbjct: 1076 SARHKVGSIFVPTPMRPPGAAY*RSLCSAKSDTILEKIGLHMSFPSLSL----ETIPGLT 909
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMWRR-YS 119
S + PT LR S S PGLL S + T+ R G G++ YS
Sbjct: 908 SISWPTFNTPFRILPPATPPLRSSTS-QPGLLTSNDLMTMRRGSEVKSLGGTGIFFTIYS 732
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILFC 166
S L FS AEIG IG +A + AR Y S A S TRSILFC
Sbjct: 731 QTTSILYFS*AEIGIIGAPSATVPCTNARICSYCSLA*LSFTRSILFC 588
>ref|NM_012010.3| Mus musculus eukaryotic translation initiation factor 2, subunit 3,
structural gene X-linked (Eif2s3x), mRNA
Length = 3587
Score = 58.9 bits (141), Expect = 5e-07, Method: Composition-based stats.
Identities = 68/168 (40%), Positives = 79/168 (47%), Gaps = 2/168 (1%)
Frame = -1
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R +VGS VPT M PPG AY +L SA T+ GL + P SL T PG
Sbjct: 1070 SARHKVGSIFVPTPMRPPGAAY*RSLCSAKSDTILEKIGLHMSFPSLSL----ETIPGLT 903
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMWRR-YS 119
S + PT LR S S PGLL S + T+ R G G++ YS
Sbjct: 902 SISWPTFNTPFRILPPATPPLRSSTS-QPGLLTSNDLMTMRRGSEVKSLGGTGIFFTIYS 726
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILFC 166
S L FS AEIG IG +A + AR Y S A S TRSILFC
Sbjct: 725 QTTSILYFS*AEIGIIGAPSATVPCTNARICSYCSLA*LSFTRSILFC 582
>emb|CT867957.7| Mouse DNA sequence from clone RP23-223P15 on chromosome X, complete
sequence
Length = 203028
Score = 58.9 bits (141), Expect = 5e-07, Method: Composition-based stats.
Identities = 68/168 (40%), Positives = 79/168 (47%), Gaps = 2/168 (1%)
Frame = -3
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R +VGS VPT M PPG AY +L SA T+ GL + P SL T PG
Sbjct: 11935 SARHKVGSIFVPTPMRPPGAAY*RSLCSAKSDTILEKIGLHMSFPSLSL----ETIPGLT 11768
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMWRR-YS 119
S + PT LR S S PGLL S + T+ R G G++ YS
Sbjct: 11767 SISWPTFNTPFRILPPATPPLRSSTS-QPGLLTSNDLMTMRRGSEVKSLGGTGIFFTIYS 11591
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILFC 166
S L FS AEIG IG +A + AR Y S A S TRSILFC
Sbjct: 11590 QTTSILYFS*AEIGIIGAPSATVPCTNARICSYCSLA*LSFTRSILFC 11447
>gb|BC063755.1| Mus musculus eukaryotic translation initiation factor 2, subunit 3,
structural gene X-linked, mRNA (cDNA clone MGC:70029
IMAGE:6513251), complete cds
Length = 3664
Score = 58.9 bits (141), Expect = 5e-07, Method: Composition-based stats.
Identities = 68/168 (40%), Positives = 79/168 (47%), Gaps = 2/168 (1%)
Frame = -3
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R +VGS VPT M PPG AY +L SA T+ GL + P SL T PG
Sbjct: 1070 SARHKVGSIFVPTPMRPPGAAY*RSLCSAKSDTILEKIGLHMSFPSLSL----ETIPGLT 903
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMWRR-YS 119
S + PT LR S S PGLL S + T+ R G G++ YS
Sbjct: 902 SISWPTFNTPFRILPPATPPLRSSTS-QPGLLTSNDLMTMRRGSEVKSLGGTGIFFTIYS 726
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILFC 166
S L FS AEIG IG +A + AR Y S A S TRSILFC
Sbjct: 725 QTTSILYFS*AEIGIIGAPSATVPCTNARICSYCSLA*LSFTRSILFC 582
>gb|BC036993.1| Mus musculus eukaryotic translation initiation factor 2, subunit 3,
structural gene X-linked, mRNA (cDNA clone IMAGE:5029974)
Length = 3600
Score = 58.9 bits (141), Expect = 5e-07, Method: Composition-based stats.
Identities = 68/168 (40%), Positives = 79/168 (47%), Gaps = 2/168 (1%)
Frame = -1
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R +VGS VPT M PPG AY +L SA T+ GL + P SL T PG
Sbjct: 1068 SARHKVGSIFVPTPMRPPGAAY*RSLCSAKSDTILEKIGLHMSFPSLSL----ETIPGLT 901
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMWRR-YS 119
S + PT LR S S PGLL S + T+ R G G++ YS
Sbjct: 900 SISWPTFNTPFRILPPATPPLRSSTS-QPGLLTSNDLMTMRRGSEVKSLGGTGIFFTIYS 724
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILFC 166
S L FS AEIG IG +A + AR Y S A S TRSILFC
Sbjct: 723 QTTSILYFS*AEIGIIGAPSATVPCTNARICSYCSLA*LSFTRSILFC 580
>dbj|AK128949.1| Mus musculus cDNA fis, clone TRACH3008061, highly similar to
Eukaryotic translation initiation factor 2 subunit 3
Length = 3585
Score = 58.9 bits (141), Expect = 5e-07, Method: Composition-based stats.
Identities = 68/168 (40%), Positives = 79/168 (47%), Gaps = 2/168 (1%)
Frame = -3
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R +VGS VPT M PPG AY +L SA T+ GL + P SL T PG
Sbjct: 1069 SARHKVGSIFVPTPMRPPGAAY*RSLCSAKSDTILEKIGLHMSFPSLSL----ETIPGLT 902
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMWRR-YS 119
S + PT LR S S PGLL S + T+ R G G++ YS
Sbjct: 901 SISWPTFNTPFRILPPATPPLRSSTS-QPGLLTSNDLMTMRRGSEVKSLGGTGIFFTIYS 725
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILFC 166
S L FS AEIG IG +A + AR Y S A S TRSILFC
Sbjct: 724 QTTSILYFS*AEIGIIGAPSATVPCTNARICSYCSLA*LSFTRSILFC 581
>dbj|AK150095.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched
library, clone:G530128N04 product:eukaryotic translation
initiation factor 2, subunit 3, structural gene X-linked,
full insert sequence
Length = 3588
Score = 58.9 bits (141), Expect = 5e-07, Method: Composition-based stats.
Identities = 68/168 (40%), Positives = 79/168 (47%), Gaps = 2/168 (1%)
Frame = -1
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R +VGS VPT M PPG AY +L SA T+ GL + P SL T PG
Sbjct: 1077 SARHKVGSIFVPTPMRPPGAAY*RSLCSAKSDTILEKIGLHMSFPSLSL----ETIPGLT 910
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMWRR-YS 119
S + PT LR S S PGLL S + T+ R G G++ YS
Sbjct: 909 SISWPTFNTPFRILPPATPPLRSSTS-QPGLLTSNDLMTMRRGSEVKSLGGTGIFFTIYS 733
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILFC 166
S L FS AEIG IG +A + AR Y S A S TRSILFC
Sbjct: 732 QTTSILYFS*AEIGIIGAPSATVPCTNARICSYCSLA*LSFTRSILFC 589
>dbj|AK146900.1| Mus musculus 17 days embryo stomach cDNA, RIKEN full-length enriched
library, clone:I920072J24 product:eukaryotic translation
initiation factor 2, subunit 3, structural gene X-linked,
full insert sequence
Length = 3625
Score = 58.9 bits (141), Expect = 5e-07, Method: Composition-based stats.
Identities = 68/168 (40%), Positives = 79/168 (47%), Gaps = 2/168 (1%)
Frame = -1
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R +VGS VPT M PPG AY +L SA T+ GL + P SL T PG
Sbjct: 1111 SARHKVGSIFVPTPMRPPGAAY*RSLCSAKSDTILEKIGLHMSFPSLSL----ETIPGLT 944
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMWRR-YS 119
S + PT LR S S PGLL S + T+ R G G++ YS
Sbjct: 943 SISWPTFNTPFRILPPATPPLRSSTS-QPGLLTSNDLMTMRRGSEVKSLGGTGIFFTIYS 767
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILFC 166
S L FS AEIG IG +A + AR Y S A S TRSILFC
Sbjct: 766 QTTSILYFS*AEIGIIGAPSATVPCTNARICSYCSLA*LSFTRSILFC 623
>dbj|AK165866.1| Mus musculus lung RCB-0558 LLC cDNA, RIKEN full-length enriched
library, clone:G730008O03 product:eukaryotic translation
initiation factor 2, subunit 3, structural gene X-linked,
full insert sequence
Length = 3583
Score = 58.9 bits (141), Expect = 5e-07, Method: Composition-based stats.
Identities = 68/168 (40%), Positives = 79/168 (47%), Gaps = 2/168 (1%)
Frame = -1
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R +VGS VPT M PPG AY +L SA T+ GL + P SL T PG
Sbjct: 1072 SARHKVGSIFVPTPMRPPGAAY*RSLCSAKSDTILEKIGLHMSFPSLSL----ETIPGLT 905
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMWRR-YS 119
S + PT LR S S PGLL S + T+ R G G++ YS
Sbjct: 904 SISWPTFNTPFRILPPATPPLRSSTS-QPGLLTSNDLMTMRRGSEVKSLGGTGIFFTIYS 728
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILFC 166
S L FS AEIG IG +A + AR Y S A S TRSILFC
Sbjct: 727 QTTSILYFS*AEIGIIGAPSATVPCTNARICSYCSLA*LSFTRSILFC 584
>dbj|AK010819.1| Mus musculus ES cells cDNA, RIKEN full-length enriched library,
clone:2410157E14 product:eukaryotic translation
initiation factor 2, subunit 3, structural gene
X-linked, full insert sequence
Length = 1263
Score = 58.9 bits (141), Expect = 5e-07, Method: Composition-based stats.
Identities = 68/168 (40%), Positives = 79/168 (47%), Gaps = 2/168 (1%)
Frame = -3
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R +VGS VPT M PPG AY +L SA T+ GL + P SL T PG
Sbjct: 748 SARHKVGSIFVPTPMRPPGAAY*RSLCSAKSDTILEKIGLHMSFPSLSL----ETIPGLT 581
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMWRR-YS 119
S + PT LR S S PGLL S + T+ R G G++ YS
Sbjct: 580 SISWPTFNTPFRILPPATPPLRSSTS-QPGLLTSNDLMTMRRGSEVKSLGGTGIFFTIYS 404
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILFC 166
S L FS AEIG IG +A + AR Y S A S TRSILFC
Sbjct: 403 QTTSILYFS*AEIGIIGAPSATVPCTNARICSYCSLA*LSFTRSILFC 260
>emb|AJ006587.1|MMU6587 Mus musculus mRNA for translation initiation factor eIF2 gamma X
Length = 1787
Score = 58.9 bits (141), Expect = 5e-07, Method: Composition-based stats.
Identities = 68/168 (40%), Positives = 79/168 (47%), Gaps = 2/168 (1%)
Frame = -2
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R +VGS VPT M PPG AY +L SA T+ GL + P SL T PG
Sbjct: 1060 SARHKVGSIFVPTPMRPPGAAY*RSLCSAKSDTILEKIGLHMSFPSLSL----ETIPGLT 893
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMWRR-YS 119
S + PT LR S S PGLL S + T+ R G G++ YS
Sbjct: 892 SISWPTFNTPFRILPPATPPLRSSTS-QPGLLTSNDLMTMRRGSEVKSLGGTGIFFTIYS 716
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILFC 166
S L FS AEIG IG +A + AR Y S A S TRSILFC
Sbjct: 715 QTTSILYFS*AEIGIIGAPSATVPCTNARICSYCSLA*LSFTRSILFC 572
>gb|AC125036.5| Mus musculus BAC clone RP23-330P20 from chromosome unknown, complete
sequence
Length = 223530
Score = 58.9 bits (141), Expect = 5e-07, Method: Composition-based stats.
Identities = 68/168 (40%), Positives = 79/168 (47%), Gaps = 2/168 (1%)
Frame = +1
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R +VGS VPT M PPG AY +L SA T+ GL + P SL T PG
Sbjct: 64045 SARHKVGSIFVPTPMRPPGAAY*RSLCSAKSDTILEKIGLHMSFPSLSL----ETIPGLT 64212
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMWRR-YS 119
S + PT LR S S PGLL S + T+ R G G++ YS
Sbjct: 64213 SISWPTFNTPFRILPPATPPLRSSTS-QPGLLTSNDLMTMRRGSEVKSLGGTGIFFTIYS 64389
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILFC 166
S L FS AEIG IG +A + AR Y S A S TRSILFC
Sbjct: 64390 QTTSILYFS*AEIGIIGAPSATVPCTNARICSYCSLA*LSFTRSILFC 64533
>ref|NM_001100542.1| Rattus norvegicus eukaryotic translation initiation factor 2, subunit
3, structural gene X-linked (Eif2s3x), mRNA
Length = 3689
Score = 58.9 bits (141), Expect = 5e-07, Method: Composition-based stats.
Identities = 66/164 (40%), Positives = 77/164 (46%), Gaps = 2/164 (1%)
Frame = -2
Query: 5 RVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRISTTC 64
+VGS VPT M PPG AY +L SA T+ GL + P SL T PG S +
Sbjct: 1063 KVGSIFVPTPMRPPGAAY*RSLCSAKSDTILEKMGLHMSFPSLSL----ETIPGLTSISW 896
Query: 65 PTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGM-WRRYSSRXS 123
PT LR S S PGLL S + T+ R G G+ + YS S
Sbjct: 895 PTFNTPFRILPPATPPLRSSTS-QPGLLTSNDLITIRRGSEVKSLGGTGIFFTMYSQTTS 719
Query: 124 TLRFSCAEIGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILFC 166
L FS AEIG IG +A + AR Y S A S TRSILFC
Sbjct: 718 ILYFS*AEIGIIGAPSATVPCTNARICSYCSLA*LSFTRSILFC 587
>gb|BC166783.1| Rattus norvegicus eukaryotic translation initiation factor 2, subunit
3, structural gene X-linked, mRNA (cDNA clone MGC:188564
IMAGE:7935021), complete cds
Length = 1715
Score = 58.9 bits (141), Expect = 5e-07, Method: Composition-based stats.
Identities = 66/164 (40%), Positives = 77/164 (46%), Gaps = 2/164 (1%)
Frame = -2
Query: 5 RVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRISTTC 64
+VGS VPT M PPG AY +L SA T+ GL + P SL T PG S +
Sbjct: 1045 KVGSIFVPTPMRPPGAAY*RSLCSAKSDTILEKMGLHMSFPSLSL----ETIPGLTSISW 878
Query: 65 PTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGM-WRRYSSRXS 123
PT LR S S PGLL S + T+ R G G+ + YS S
Sbjct: 877 PTFNTPFRILPPATPPLRSSTS-QPGLLTSNDLITIRRGSEVKSLGGTGIFFTMYSQTTS 701
Query: 124 TLRFSCAEIGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILFC 166
L FS AEIG IG +A + AR Y S A S TRSILFC
Sbjct: 700 ILYFS*AEIGIIGAPSATVPCTNARICSYCSLA*LSFTRSILFC 569
>gb|BC091286.1| Rattus norvegicus eukaryotic translation initiation factor 2,
subunit 3, structural gene X-linked, mRNA (cDNA clone
IMAGE:7304876), partial cds
Length = 2502
Score = 58.9 bits (141), Expect = 5e-07, Method: Composition-based stats.
Identities = 66/164 (40%), Positives = 77/164 (46%), Gaps = 2/164 (1%)
Frame = -1
Query: 5 RVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRISTTC 64
+VGS VPT M PPG AY +L SA T+ GL + P SL T PG S +
Sbjct: 846 KVGSIFVPTPMRPPGAAY*RSLCSAKSDTILEKMGLHMSFPSLSL----ETIPGLTSISW 679
Query: 65 PTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGM-WRRYSSRXS 123
PT LR S S PGLL S + T+ R G G+ + YS S
Sbjct: 678 PTFNTPFRILPPATPPLRSSTS-QPGLLTSNDLITIRRGSEVKSLGGTGIFFTMYSQTTS 502
Query: 124 TLRFSCAEIGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILFC 166
L FS AEIG IG +A + AR Y S A S TRSILFC
Sbjct: 501 ILYFS*AEIGIIGAPSATVPCTNARICSYCSLA*LSFTRSILFC 370
>emb|AJ715868.1| Cercopis vulnerata mRNA for eukaryotic translation initiation factor
2 gamma subunit (eIF2g gene)
Length = 1568
Score = 58.5 bits (140), Expect = 6e-07, Method: Composition-based stats.
Identities = 63/167 (37%), Positives = 79/167 (47%), Gaps = 2/167 (1%)
Frame = -1
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R RVGS VPT + PPG A CS+ SA T+ G V P +L T+PGR
Sbjct: 1076 SARQRVGSIFVPTPIRPPGTANCSSFCSAKSETILEKIGRHVNLP----LLSFDTRPGRT 909
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGM-WRRYS 119
S + P + S S PGLL SK+ T+ R G RTG G+ + YS
Sbjct: 908 SISIPIFNTPRRILPPATPPFKSSTS-HPGLLTSKDLITIRRGGDVKSRTGTGIFFVMYS 732
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILF 165
+ S L S AEIG G +A + + Y S A S T+SILF
Sbjct: 731 HKTSILYLS*AEIGITGAPSATVP*INFKICSYCSLA*PSLTKSILF 591
>gb|EU879974.1| Felis catus EIF2S3X mRNA, complete sequence
Length = 2409
Score = 58.5 bits (140), Expect = 6e-07, Method: Composition-based stats.
Identities = 67/168 (39%), Positives = 80/168 (47%), Gaps = 2/168 (1%)
Frame = -2
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R +VGS VPT + PPG AY +L SA T+ GL + P SL T PG
Sbjct: 1073 SARHKVGSIFVPTPIRPPGAAY*RSLCSAKSDTIFEKIGLHMSFPSLSL----ETIPGLT 906
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGM-WRRYS 119
S + PT LR S S PGLL SK+ T+ R G G+ + YS
Sbjct: 905 SISWPTFNTPFRILPPATPPLRSSTS-QPGLLTSKDLITMSRGSEVKSLGGTGIFFTMYS 729
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILFC 166
S L FS AEIG IG +A + AR Y S A S T+SILFC
Sbjct: 728 QTTSILYFS*AEIGIIGAPSATVPCTNARICSYCSLA*LSFTKSILFC 585
>dbj|AK151579.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length
enriched library, clone:I830031O12 product:eukaryotic
translation initiation factor 2, subunit 3, structural
gene X-linked, full insert sequence
Length = 3135
Score = 58.5 bits (140), Expect = 6e-07, Method: Composition-based stats.
Identities = 68/168 (40%), Positives = 79/168 (47%), Gaps = 2/168 (1%)
Frame = -2
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R +VGS VPT M PPG AY +L SA T+ GL + P SL T PG
Sbjct: 626 SARHKVGSIFVPTPMRPPGAAY*RSLCSAKSDTILEKIGLHMSFPSLSL----ETIPGLT 459
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMWRR-YS 119
S + PT LR S S PGLL S + T+ R G G++ YS
Sbjct: 458 SISWPTFNTPFRILPPATPPLRSSTS-QPGLLTSNDLMTMRRGSEVKSLGGTGIFFTIYS 282
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILFC 166
S L FS AEIG IG +A + AR Y S A S TRSILFC
Sbjct: 281 QTTSILYFS*AEIGIIGAPSATVPCTNARIRSYCSLA*LSFTRSILFC 138
>dbj|AK153568.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length
enriched library, clone:I830176J05 product:eukaryotic
translation initiation factor 2, subunit 3, structural
gene X-linked, full insert sequence
Length = 3135
Score = 58.5 bits (140), Expect = 6e-07, Method: Composition-based stats.
Identities = 68/168 (40%), Positives = 79/168 (47%), Gaps = 2/168 (1%)
Frame = -2
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R +VGS VPT M PPG AY +L SA T+ GL + P SL T PG
Sbjct: 626 SARHKVGSIFVPTPMRPPGAAY*RSLCSAKSDTILEKIGLHMSFPSLSL----ETIPGLT 459
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMWRR-YS 119
S + PT LR S S PGLL S + T+ R G G++ YS
Sbjct: 458 SISWPTFNTPFRILPPATPPLRSSTS-QPGLLTSNDLMTMRRGSEVKSLGGTGIFFTIYS 282
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILFC 166
S L FS AEIG IG +A + AR Y S A S TRSILFC
Sbjct: 281 QTTSILYFS*AEIGIIGAPSATVPCTNARIRSYCSLA*LSFTRSILFC 138
>ref|XM_753413.1| Ustilago maydis 521 hypothetical protein (UM02359.1) partial mRNA
Length = 1365
Score = 58.5 bits (140), Expect = 7e-07, Method: Composition-based stats.
Identities = 64/168 (38%), Positives = 83/168 (49%), Gaps = 2/168 (1%)
Frame = -2
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R +VGS +VPT ++PPG A C +L SA + R GL P SLV T PGR
Sbjct: 1007 SARHKVGSILVPTPINPPGTANCKSLCSASNDSTREKIGLQ*ILPSLSLV----TIPGRT 840
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGM-WRRYS 119
S + P ++ R S + +PGLL SK+R T+ R G RTG G YS
Sbjct: 839 SIS*P-ILSTPERIDPPATPPRSSSTSAPGLLTSKDRITIRRGGEVKSRTGTGTRLTMYS 663
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLSKXARTWRYU-SCAFTSPTRSILFC 166
S L SCAE+GT+G +A + + S A S +S LFC
Sbjct: 662 LTASMLYLSCAEMGTMGAPSATVPLTKLMIDFQCSSAACSRIKSTLFC 519
>ref|XM_001482340.1| Pichia guilliermondii ATCC 6260 eukaryotic translation initiation
factor 2 gamma subunit partial mRNA
Length = 1647
Score = 58.5 bits (140), Expect = 8e-07, Method: Composition-based stats.
Identities = 64/164 (39%), Positives = 82/164 (50%), Gaps = 3/164 (1%)
Frame = -2
Query: 6 VGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRISTTCP 65
VGS+ VP ++PPG A +L SA VT+ GL P SLV T PG IS + P
Sbjct: 1274 VGSTFVPKPINPPGTANFKSLCSANNVTI*EKMGLH*IFPLSSLV----TIPGLISISSP 1107
Query: 66 TLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWR--TGIGMWRRYSSRXS 123
L + S+S PGLL SKER T+ R A R TGI + + + S
Sbjct: 1106 ILNTPFKMEPPATPPFKSSIS-EPGLLTSKERITINRGDAEKSRGGTGIELTMNWFTA-S 933
Query: 124 TLRFSCAEIGTIGTFNAMLSKXA-RTWRYUSCAFTSPTRSILFC 166
L F+ AEIGTIG +AM+ + + S A +S RS LFC
Sbjct: 932 MLYFNWAEIGTIGAPSAMVPLIKFKIDFWCSNADSSLIRSTLFC 801
>dbj|AK286795.1| Glycine max cDNA, clone: GMFL01-36-N09
Length = 1852
Score = 58.2 bits (139), Expect = 8e-07, Method: Composition-based stats.
Identities = 56/143 (39%), Positives = 72/143 (50%), Gaps = 1/143 (0%)
Frame = -2
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S RV+VGS VVPT + PPG A S+ SA T+ + G+ + P SL T PGR
Sbjct: 1182 SARVKVGSIVVPTPIRPPGTAN*SSFCSAYNETILEYMGVHLIFPLSSLT----TMPGRT 1015
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMWRR-YS 119
S T L S S PGLL S +R T+M G + +GIG++ YS
Sbjct: 1014 SMN*LTFKTPLRMLPPATPPLISSTS-*PGLLTSNDRITIMLGGETKFLSGIGIFFTIYS 838
Query: 120 SRXSTLRFSCAEIGTIGTFNAML 142
S L F+CAEIGT G +A +
Sbjct: 837 HTTSILYFNCAEIGTTGAPSATV 769
>ref|XM_001271648.1| Aspergillus clavatus NRRL 1 translation initiation factor EF-2 gamma
subunit, putative (ACLA_046890), partial mRNA
Length = 1551
Score = 58.2 bits (139), Expect = 8e-07, Method: Composition-based stats.
Identities = 69/168 (41%), Positives = 83/168 (49%), Gaps = 2/168 (1%)
Frame = -2
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R RVGS+ VPT + PPG A +L SA T R G P SLV T+PGRI
Sbjct: 1193 SARHRVGSTRVPTPIRPPGTANFRSLCSAKSETTREKMGRH*ILPFSSLV----TRPGRI 1026
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMWR-RYS 119
S + L S+S +PGLL SKER T+M A RTG GM RYS
Sbjct: 1025 SISSFNLSTPVRIEPPATPPFSSSIS-APGLLTSKERMTIM*GEAVKSRTGTGMCETRYS 849
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLSKXARTWRYUSC-AFTSPTRSILFC 166
S L SCAEIG +G +A + + + C A +S RS LFC
Sbjct: 848 LTASMLYLSCAEIGMMGEPSATVPRMNFRIDW*CCKAPSSLIRSTLFC 705
>ref|XM_001220676.1| Chaetomium globosum CBS 148.51 hypothetical protein (CHGG_01456)
partial mRNA
Length = 1542
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 56/143 (39%), Positives = 71/143 (49%), Gaps = 1/143 (0%)
Frame = -2
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R RVGS VPT + PPG AY +L S L T+R+ G+ ++ P S T PGRI
Sbjct: 1181 SARQRVGSIRVPTPIRPPGTAYLRSLASELSDTIRLKMGVHLRLPLSS----RDTIPGRI 1014
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMWRRYSS 120
S + P+ L S+S +PGLL SK+R T+M GIGM +S
Sbjct: 1013 SISSPSFSRPCKILPPATPPLSSSIS-APGLLTSKDRITIMCGSIEKSLGGIGMVLTIAS 837
Query: 121 -RXSTLRFSCAEIGTIGTFNAML 142
S L S AEIG IG A +
Sbjct: 836 LMASILNLSWAEIGMIGDLPATV 768
>ref|XM_001746957.1| Monosiga brevicollis MX1 predicted protein MONBRDRAFT_32961 mRNA,
complete cds
Length = 1937
Score = 57.8 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 70/168 (41%), Positives = 80/168 (47%), Gaps = 2/168 (1%)
Frame = -1
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R VGS VPT + PPG AY S+ FSAL G+ + P SL T PGR
Sbjct: 1298 SARQMVGSIKVPTPIRPPGTAYSSSFFSALSDNTSERIGMHLSLPWSSL----DTIPGRT 1131
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMWRR-YS 119
S + P L LR S S PG L SKER T+ R G R G G+ + YS
Sbjct: 1130 SIS*PRLSTPCRILPPATPPLRSSTS-QPGRLTSKERITIRRGGEIKSRLGTGICEQMYS 954
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLSKXART-WRYUSCAFTSPTRSILFC 166
S L S AEIGT G +AM+ T S A S TRSILFC
Sbjct: 953 LMTSML*RS*AEIGTTGALSAMVPLTKSTICPCCSLACASLTRSILFC 810
>gb|DQ206596.1| Monosiga brevicollis isolate TOA6 eukaryotic translation initiation
factor 2 mRNA, partial cds
Length = 996
Score = 57.8 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 70/168 (41%), Positives = 80/168 (47%), Gaps = 2/168 (1%)
Frame = -2
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R VGS VPT + PPG AY S+ FSAL G+ + P SL T PGR
Sbjct: 632 SARQMVGSIKVPTPIRPPGTAYSSSFFSALSDNTSERIGMHLSLPWSSL----DTIPGRT 465
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMWRR-YS 119
S + P L LR S S PG L SKER T+ R G R G G+ + YS
Sbjct: 464 SIS*PRLSTPCRILPPATPPLRSSTS-QPGRLTSKERITIRRGGEIKSRLGTGICEQMYS 288
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLSKXART-WRYUSCAFTSPTRSILFC 166
S L S AEIGT G +AM+ T S A S TRSILFC
Sbjct: 287 LMTSML*RS*AEIGTTGALSAMVPLTKSTICPCCSLACASLTRSILFC 144
>emb|AM920437.1| Penicillium chrysogenum Wisconsin 54-1255 complete genome, contig Pc00c22
Length = 6387817
Score = 57.8 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 60/145 (41%), Positives = 73/145 (50%), Gaps = 1/145 (0%)
Frame = -3
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R VGS+ VPT + PPG A +L SA R T+R G P SLV T+PGRI
Sbjct: 4489625 SARQSVGSTRVPTPIKPPGTANLRSLCSAKRDTMREKMGRHWILPCSSLV----TRPGRI 4489458
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGM-WRRYS 119
S + + L S+S +PGLL S ER +M A R GIGM W R S
Sbjct: 4489457 SISSFSFTTPVRMEPPATPPLSSSIS-APGLLTSNERMIIM*GVASKLRRGIGMVWTRAS 4489281
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLSK 144
S L FSCAEIG G +A + +
Sbjct: 4489280 LTASMLYFSCAEIGMTGDPSATVPR 4489206
>ref|XM_001401525.1| Aspergillus niger CBS 513.88 hypothetical protein (An04g01940)
partial mRNA
Length = 1542
Score = 57.8 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 66/168 (39%), Positives = 81/168 (48%), Gaps = 2/168 (1%)
Frame = -2
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R RVGS+ VPT + PPG A +L SA R R G P SLV T+PGRI
Sbjct: 1184 SARHRVGSTRVPTPIKPPGTANLRSLCSAKRDMTREKMGRH*ILPFSSLV----TRPGRI 1017
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMWR-RYS 119
S + S+S +PGL SKER T+M A RTG GM RYS
Sbjct: 1016 SISSFCFRTPVKIEPPATPPFSSSIS-APGLFTSKERMTIMWGEAVKSRTGTGMCETRYS 840
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLSKXARTWRYUSC-AFTSPTRSILFC 166
S L SCAE+G IG +A + + + C A +S +S LFC
Sbjct: 839 LTASMLYLSCAEMGMIGEPSATVPRMNFKIDW*CCRAPSSLIKSTLFC 696
>emb|AM270071.1| Aspergillus niger contig An04c0100, complete genome
Length = 205464
Score = 57.8 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 66/168 (39%), Positives = 81/168 (48%), Gaps = 2/168 (1%)
Frame = -1
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R RVGS+ VPT + PPG A +L SA R R G P SLV T+PGRI
Sbjct: 46377 SARHRVGSTRVPTPIKPPGTANLRSLCSAKRDMTREKMGRH*ILPFSSLV----TRPGRI 46210
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMWR-RYS 119
S + S+S +PGL SKER T+M A RTG GM RYS
Sbjct: 46209 SISSFCFRTPVKIEPPATPPFSSSIS-APGLFTSKERMTIMWGEAVKSRTGTGMCETRYS 46033
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLSKXARTWRYUSC-AFTSPTRSILFC 166
S L SCAE+G IG +A + + + C A +S +S LFC
Sbjct: 46032 LTASMLYLSCAEMGMIGEPSATVPRMNFKIDW*CCRAPSSLIKSTLFC 45889
>emb|CU676477.1| Synthetic construct Homo sapiens gateway clone IMAGE:100017336 3'
read EIF2S3 mRNA
Length = 1172
Score = 57.8 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 62/167 (37%), Positives = 76/167 (45%), Gaps = 2/167 (1%)
Frame = +2
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R +VGS VPT + PPG AYC +L SA T+ GL + P SL T PG
Sbjct: 383 SARHKVGSIFVPTPIRPPGAAYCRSLCSAKSDTILEKIGLHMSFPSLSL----ETIPGLT 550
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGM-WRRYS 119
S + PT LR S S PGLL SK+ T+ R G G+ + YS
Sbjct: 551 SISWPTFNTPFRILPPATPPLRSSTS-QPGLLTSKDLITISRGSEVKSLGGTGIFFTMYS 727
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILF 165
S L FS AEI +G +A + AR Y A T T+S F
Sbjct: 728 QTTSILYFS*AEIEIMGAPSATVPWTNARICSYCPLA*TFFTKSFYF 868
>ref|XM_002112854.1| Trichoplax adhaerens eukaryotic translation initiation factor 2
gamma, mRNA
Length = 1478
Score = 57.8 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 64/168 (38%), Positives = 78/168 (46%), Gaps = 2/168 (1%)
Frame = -1
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R VGS VPT + PPG AY + FSA R T+ G+ P L T PG
Sbjct: 1079 SPRQSVGSIFVPTPIRPPGTAYWRSFFSAYRDTILDTIGVQTISPS----LFFDTMPGLT 912
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMW-RRYS 119
S +CPT S S PGLL SKER T+ R A TG G++ + YS
Sbjct: 911 SISCPTFNTP*RILPPATPPFNSSTS-LPGLLTSKERMTIKRGSARKSLTGNGIFLQMYS 735
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILFC 166
S L FS A+IG G +A + + Y S A S +SILFC
Sbjct: 734 HTTSMLYFSWADIGITGADSATVP*TNFVIFSYWSLA*PSLIKSILFC 591
>gb|AY087689.1| Arabidopsis thaliana clone 37699 mRNA, complete sequence
Length = 1709
Score = 57.8 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 60/143 (41%), Positives = 74/143 (51%), Gaps = 1/143 (0%)
Frame = -3
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S RVRVGS VVPT + P G A S+ SA +R G+ + P SLV T PGRI
Sbjct: 1146 SARVRVGSIVVPTPIRPSGTAN*SSFCSA*SEMMRE*IGVHFELPRSSLV----TIPGRI 979
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMW-RRYS 119
S TL L S S PGLL SK+R T++ G + +GIG++ YS
Sbjct: 978 SINWLTLKTPRRILPPATPPLISSTS-*PGLLTSKDRITIIFGGDTKFLSGIGIFLTMYS 802
Query: 120 SRXSTLRFSCAEIGTIGTFNAML 142
S L FSCAE GTIG +A +
Sbjct: 801 HTTSMLYFSCAETGTIGAASATV 733
>gb|EU879975.1| Felis catus EIF2S3Y mRNA, complete sequence
Length = 2561
Score = 57.8 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 66/168 (39%), Positives = 79/168 (47%), Gaps = 2/168 (1%)
Frame = -2
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R +VGS VPT + PPG AY +L SA T+ GL + P SL T PG
Sbjct: 1072 SARHKVGSIFVPTPIRPPGAAY*RSLCSAKSDTILEKIGLHMSFPSLSL----ETMPGLT 905
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMWRR-YS 119
S + PT LR S S PGLL SK+ T+ R G G++ YS
Sbjct: 904 SISWPTFNTPFKILPPATPPLRSSTS-QPGLLTSKDLITISRGSEVKSLRGTGIFFTIYS 728
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILFC 166
S L FS AEIG IG +A + A Y S A S T+SILFC
Sbjct: 727 QTTSILYFS*AEIGIIGAPSATVPCTNASICSYCSLA*LSFTKSILFC 584
>gb|BT066809.1| Zea mays full-length cDNA clone ZM_BFb0077K11 mRNA, complete cds
Length = 1773
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 68/170 (40%), Positives = 85/170 (50%), Gaps = 4/170 (2%)
Frame = -3
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S RVRVGS VVPT +SPPG A S+ SA T+ G+ + P S + T PGR
Sbjct: 1201 SARVRVGSMVVPTPISPPGTANWSSFCSA*SETILE*IGVHLMFPFSSFI----TMPGRT 1034
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGM-WRRYS 119
S TL L S S PGLL SKER T+M G + +G+G+ + YS
Sbjct: 1033 SIFWFTLRTPLRILPPATPPLISSTS-EPGLLTSKERITIMLGGEVKFLSGMGIFFTMYS 857
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLSKXARTWRYUSC---AFTSPTRSILFC 166
S L FS A+IGT G +A++ + SC A S RSILFC
Sbjct: 856 QITSMLYFSWADIGTTGAPSAIVP--WMNFWIASC*FIAALSWIRSILFC 713
>gb|EU966655.1| Zea mays clone 295952 eukaryotic translation initiation factor 2
gamma subunit mRNA, complete cds
Length = 1708
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 68/170 (40%), Positives = 85/170 (50%), Gaps = 4/170 (2%)
Frame = -3
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S RVRVGS VVPT +SPPG A S+ SA T+ G+ + P S + T PGR
Sbjct: 1196 SARVRVGSMVVPTPISPPGTANWSSFCSA*SETILE*IGVHLMFPFSSFI----TMPGRT 1029
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGM-WRRYS 119
S TL L S S PGLL SKER T+M G + +G+G+ + YS
Sbjct: 1028 SIFWFTLRTPLRILPPATPPLISSTS-EPGLLTSKERITIMLGGEVKFLSGMGIFFTMYS 852
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLSKXARTWRYUSC---AFTSPTRSILFC 166
S L FS A+IGT G +A++ + SC A S RSILFC
Sbjct: 851 QITSMLYFSWADIGTTGAPSAIVP--WMNFWIASC*FIAALSWIRSILFC 708
>ref|XM_781988.2| PREDICTED: Strongylocentrotus purpuratus similar to translation
initiation factor 2 gamma subunit (LOC582011), mRNA
Length = 1347
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 66/167 (39%), Positives = 78/167 (46%), Gaps = 2/167 (1%)
Frame = -2
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R RVGS VPT + PPG A + FSA R T+ GL L T PGR
Sbjct: 1040 SARHRVGSIFVPTPIRPPGTANWRSFFSAKRDTILEKMGL----H*SLPSLSLDTMPGRT 873
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMWR-RYS 119
S +CPT RS++ PGL SK+R T+ RTGIG++ YS
Sbjct: 872 SISCPTFNTPLRILPPATPPF-RSLTSQPGLFTSKDRITMSLGSEVKSRTGIGIFLVMYS 696
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILF 165
S L FS AEIG G +A + R Y S A S TRSILF
Sbjct: 695 QMTSILCFS*AEIGMTGAPSATVP*TNFRICSYCSLA*LSLTRSILF 555
>ref|XM_001178408.1| PREDICTED: Strongylocentrotus purpuratus similar to translation
initiation factor 2 gamma subunit (LOC582011), mRNA
Length = 1347
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 66/167 (39%), Positives = 78/167 (46%), Gaps = 2/167 (1%)
Frame = -2
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R RVGS VPT + PPG A + FSA R T+ GL L T PGR
Sbjct: 1040 SARHRVGSIFVPTPIRPPGTANWRSFFSAKRDTILEKMGL----H*SLPSLSLDTMPGRT 873
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMWR-RYS 119
S +CPT RS++ PGL SK+R T+ RTGIG++ YS
Sbjct: 872 SISCPTFNTPLRILPPATPPF-RSLTSQPGLFTSKDRITMSLGSEVKSRTGIGIFLVMYS 696
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILF 165
S L FS AEIG G +A + R Y S A S TRSILF
Sbjct: 695 QMTSILCFS*AEIGMTGAPSATVP*TNFRICSYCSLA*LSLTRSILF 555
>ref|XM_002162203.1| PREDICTED: Hydra magnipapillata similar to eukaryotic translation
initiation factor 2, subunit 3, structural gene Y-linked
(LOC100213814), mRNA
Length = 1391
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 62/170 (36%), Positives = 80/170 (47%), Gaps = 4/170 (2%)
Frame = -1
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R VGS +VPT + PPG AYC +L SA + T+ G P S PGRI
Sbjct: 923 SARHNVGSILVPTPIRPPGAAYCKSLCSANKDTIFENMGWHRSLPSESF----EIMPGRI 756
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMWRRY-S 119
S + T + S S PGL S +R T+ R R G G++ + S
Sbjct: 755 SISWLTFKIPLRILPPATPPFKSSTS-QPGLFTSNDRITIKRG*DLKSRIGTGIFLQI*S 579
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLSKXARTWRYUSC---AFTSPTRSILFC 166
S L F+ A+IGTIG +A++ R R SC A S T+SILFC
Sbjct: 578 QITSILYFN*ADIGTIGDPSAIVPLTNR--RICSCCSFA*VSLTKSILFC 435
>emb|AJ715862.1| Lepismachilis sp. VK-2004 mRNA for eukaryotic translation initiation
factor 2 gamma subunit (eIF2g gene)
Length = 1703
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 66/168 (39%), Positives = 78/168 (46%), Gaps = 2/168 (1%)
Frame = -2
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R VGS VPT + PPG A + SA T+ G V P SL T+PGR
Sbjct: 1069 SARQSVGSIFVPTPIRPPGTANWRSFCSAQSDTILX*IGRHVSFPSSSL----DTRPGRT 902
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMWRR-YS 119
S + PTL LR S S PGL S ER T+ R R G G++ YS
Sbjct: 901 SISIPTLSTPRRILPPATPPLRSSTS-QPGLFTSNERITMRRGCDVKSRRGTGIFLVIYS 725
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILFC 166
S L SCA+IG G +A + R Y S A+ S TRSILFC
Sbjct: 724 QITSMLYLSCADIGITGAPSATVP*TNLRICSYCSFAWLSLTRSILFC 581
>ref|XM_959373.2| Neurospora crassa OR74A eukaryotic translation initiation factor 2
gamma subunit partial mRNA
Length = 1509
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 57/145 (39%), Positives = 74/145 (51%), Gaps = 1/145 (0%)
Frame = -2
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R RVGS VPT M PPG AY +L S LR T+ + G+ ++ P S V T PGRI
Sbjct: 1178 SARQRVGSMRVPTPMRPPGTAYLRSLASELRETILLKMGVHLRSPFSSRV----TIPGRI 1011
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMWRRYSS 120
S + P+L L S+S +PGLL SKER T++ G GM +S
Sbjct: 1010 SISSPSLRTPWRMEPPATPPLSSSIS-APGLLTSKERMTIIWGSMEKSLGGTGMVLTMAS 834
Query: 121 -RXSTLRFSCAEIGTIGTFNAMLSK 144
S L S AE+G +G F A + +
Sbjct: 833 LMASMLNLSWAEMGMMGDFPATVPR 759
>emb|BX815768.1|CNS0ABJW Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS92ZD08 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1506
Score = 42.0 bits (97), Expect(2) = 2e-06, Method: Composition-based stats.
Identities = 26/55 (47%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Frame = -2
Query: 89 PGLLMSKERTTVMRTGAFSWRTGIGMW-RRYSSRXSTLRFSCAEIGTIGTFNAML 142
PGLL SK+R T++ G + +GIG++ YS S L FSCAE GTIG +A +
Sbjct: 830 PGLLTSKDRITIIFGGDTKFLSGIGIFLTMYSHTTSMLYFSCAETGTIGAASATV 666
Score = 35.0 bits (79), Expect(2) = 2e-06, Method: Composition-based stats.
Identities = 32/67 (47%), Positives = 37/67 (55%)
Frame = -3
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S RVRVGS VVPT + PPG A S+ SA +R G+ + P SLV T PGRI
Sbjct: 1078 SARVRVGSIVVPTPIRPPGTAN*SSFCSA*SEMMRE*IGVHFELPRSSLV----TIPGRI 911
Query: 61 STTCPTL 67
S TL
Sbjct: 910 SINWLTL 890
>gb|FJ627276.1| Bos taurus Eif2s3y mRNA, partial cds
Length = 1081
Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 65/168 (38%), Positives = 80/168 (47%), Gaps = 2/168 (1%)
Frame = -3
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R +VGS VPT + PPG AY +L SA T+ GL + P SL T PG
Sbjct: 995 SARHKVGSIFVPTPIRPPGAAY*RSLCSAKSDTILEKIGLHMSFPSLSL----ETIPGLT 828
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMWRR-YS 119
S + T L RS++ PGLL SK+ T+ R G G++ YS
Sbjct: 827 SISWLTFNTPFKILPPATPPL-RSLTSQPGLLTSKDLITISRGSEVKSLRGTGIFLTIYS 651
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILFC 166
S L FS AEIG IG +A + AR Y S A S T+SILFC
Sbjct: 650 QTTSILYFS*AEIGIIGAPSATVPCTNARICSYCSLA*LSFTKSILFC 507
>ref|XM_719183.1| Plasmodium yoelii yoelii str. 17XNL translation initiation factor
eIF-2 (PY04028) partial mRNA
Length = 1398
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 61/170 (35%), Positives = 76/170 (44%), Gaps = 4/170 (2%)
Frame = -2
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S RVR+GS VPT ++PPG AY LFSA + GL V P S + PG I
Sbjct: 1034 SARVRIGSIRVPTPINPPGTAYFKLLFSANIDNILEIIGLQVISPFSSFDI----IPGLI 867
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMW-RRYS 119
S PT S+S SPGLL SK+ T++ GI +W YS
Sbjct: 866 SI*SPTFNTPCKILPPATPPCNVSIS-SPGLLTSKDLITIICGDEIKSLLGILIWVTMYS 690
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLSKXARTWRYUSCAF---TSPTRSILFC 166
S L F A IG IG +A + + + SC F +S S LFC
Sbjct: 689 HTTSILYFKTALIGIIGALSAAVPE--TKFLISSCCFNACSSFINSTLFC 546
>ref|NM_001072831.1| Oryza sativa (japonica cultivar-group) Os12g0176800 (Os12g0176800)
mRNA, complete cds
Length = 1899
Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 57/143 (39%), Positives = 73/143 (51%), Gaps = 1/143 (0%)
Frame = -1
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S RV+VGS VVPT + PPG A S+ SA T+ G+ + P S + T PGR
Sbjct: 1182 SARVKVGSMVVPTPIRPPGTANWSSFCSA*SETILE*IGVHLMLPLSSFI----TIPGRT 1015
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGM-WRRYS 119
S TL L S S PGLL SKER T+M G + +G+G+ + YS
Sbjct: 1014 SMFWLTLKTPLRMLPPATPPLISSTS-EPGLLTSKERITIMFGGEVKFLSGMGIFFTMYS 838
Query: 120 SRXSTLRFSCAEIGTIGTFNAML 142
S L FS A+IGT G +AM+
Sbjct: 837 QITSMLYFS*ADIGTTGAPSAMV 769
>dbj|AK069023.1| Oryza sativa Japonica Group cDNA clone:J023003F18, full insert
sequence
Length = 1900
Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 57/143 (39%), Positives = 73/143 (51%), Gaps = 1/143 (0%)
Frame = -1
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S RV+VGS VVPT + PPG A S+ SA T+ G+ + P S + T PGR
Sbjct: 1183 SARVKVGSMVVPTPIRPPGTANWSSFCSA*SETILE*IGVHLMLPLSSFI----TIPGRT 1016
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGM-WRRYS 119
S TL L S S PGLL SKER T+M G + +G+G+ + YS
Sbjct: 1015 SMFWLTLKTPLRMLPPATPPLISSTS-EPGLLTSKERITIMFGGEVKFLSGMGIFFTMYS 839
Query: 120 SRXSTLRFSCAEIGTIGTFNAML 142
S L FS A+IGT G +AM+
Sbjct: 838 QITSMLYFS*ADIGTTGAPSAMV 770
>ref|XM_001821269.1| Aspergillus oryzae RIB40 hypothetical protein partial mRNA
Length = 1542
Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 62/145 (42%), Positives = 75/145 (51%), Gaps = 1/145 (0%)
Frame = -2
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R RVGS+ VPT + PPG A +L SA R T R G P SLV T+PGRI
Sbjct: 1184 SARHRVGSTRVPTPIRPPGTANFRSLCSAKRETTREKMGRH*ILPFSSLV----TRPGRI 1017
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMWR-RYS 119
ST+ +L S+S +PGL S ER T+M A RTG GMW RYS
Sbjct: 1016 STSSLSLSTPVRMEPPATPPFSSSIS-APGLFTSNERMTIMCGEAVKSRTGTGMWETRYS 840
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLSK 144
S L FS AE+G IG +A + +
Sbjct: 839 LTASMLYFS*AEMGIIGEPSATVPR 765
>dbj|AB225679.1| Aspergillus oryzae cDNA, contig sequence: AoEST2534
Length = 1869
Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 62/145 (42%), Positives = 75/145 (51%), Gaps = 1/145 (0%)
Frame = -3
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R RVGS+ VPT + PPG A +L SA R T R G P SLV T+PGRI
Sbjct: 1282 SARHRVGSTRVPTPIRPPGTANFRSLCSAKRETTREKMGRH*ILPFSSLV----TRPGRI 1115
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMWR-RYS 119
ST+ +L S+S +PGL S ER T+M A RTG GMW RYS
Sbjct: 1114 STSSLSLSTPVRMEPPATPPFSSSIS-APGLFTSNERMTIMCGEAVKSRTGTGMWETRYS 938
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLSK 144
S L FS AE+G IG +A + +
Sbjct: 937 LTASMLYFS*AEMGIIGEPSATVPR 863
>dbj|AP007157.1| Aspergillus oryzae RIB40 genomic DNA, SC023
Length = 2661830
Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 62/145 (42%), Positives = 75/145 (51%), Gaps = 1/145 (0%)
Frame = +2
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R RVGS+ VPT + PPG A +L SA R T R G P SLV T+PGRI
Sbjct: 2127872 SARHRVGSTRVPTPIRPPGTANFRSLCSAKRETTREKMGRH*ILPFSSLV----TRPGRI 2128039
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMWR-RYS 119
ST+ +L S+S +PGL S ER T+M A RTG GMW RYS
Sbjct: 2128040 STSSLSLSTPVRMEPPATPPFSSSIS-APGLFTSNERMTIMCGEAVKSRTGTGMWETRYS 2128216
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLSK 144
S L FS AE+G IG +A + +
Sbjct: 2128217 LTASMLYFS*AEMGIIGEPSATVPR 2128291
>ref|XM_739230.1| Plasmodium chabaudi chabaudi eukaryotic translation initiation
factor 2 gamma subunit (PC000063.03.0) partial mRNA
Length = 849
Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 57/159 (35%), Positives = 72/159 (45%), Gaps = 1/159 (0%)
Frame = -2
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S RVR+GS VPT ++PPG AY LFSA + GL V P S + PG I
Sbjct: 485 SARVRIGSIRVPTPINPPGTAYFKLLFSANIDNILEIIGLHVISPFSSFDI----IPGLI 318
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMWRR-YS 119
S PT S+S SPGLL SK+ T++ GI +W YS
Sbjct: 317 SI*SPTFNTPCKILPPATPPCNPSIS-SPGLLTSKDLITIICGDEIKSLLGILIWVTIYS 141
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLSKXARTWRYUSCAFTS 158
S L F A IG IG +A + + +R SC F +
Sbjct: 140 HTTSMLYFKTALIGIIGALSAAVPE--TKFRISSCCFNA 30
>gb|AE017344.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 4, complete
sequence
Length = 1783081
Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 54/142 (38%), Positives = 69/142 (48%)
Frame = +1
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R R GS+ VPT + PPG A SA R T+R G V+ P SLV+R PGRI
Sbjct: 414511 SARQRAGSTRVPTPIRPPGTAN*RWFCSAWRETIRDRKGRQVQIPLASLVIR----PGRI 414678
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMWRRYSS 120
ST+ P L S +P+PGLL S +R T +R A G M + ++
Sbjct: 414679 STSWPILKTPCKILPPATPPFNSS-TPAPGLLTSNDRITTIRGSALKS*LGGAMLQIAAT 414855
Query: 121 RXSTLRFSCAEIGTIGTFNAML 142
S L S AE G IG A++
Sbjct: 414856 TASMLNLSWAETGMIGARRAVV 414921
>ref|XM_001912981.1| Podospora anserina DSM 980 hypothetical protein (PODANSg10065)
partial mRNA
Length = 1530
Score = 56.2 bits (134), Expect = 4e-06, Method: Composition-based stats.
Identities = 55/139 (39%), Positives = 72/139 (51%), Gaps = 1/139 (0%)
Frame = -2
Query: 5 RVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRISTTC 64
RVGS VPT + PPG AY S+L S LR T+R+ G+ ++ P S V T PGRIS +
Sbjct: 1160 RVGSMRVPTPIRPPGTAYFSSLASELRDTIRLKMGVHLRSPLSSRV----TMPGRISISS 993
Query: 65 PTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMWRRYSS-RXS 123
P+L L S+S +PGLL S +R T+M G+GM +S S
Sbjct: 992 PSLSRP*RTEPPATPPLSSSIS-APGLLTSNDRMTIMWGSMEKSLGGMGMVLTIASLMAS 816
Query: 124 TLRFSCAEIGTIGTFNAML 142
L S AE+G IG A +
Sbjct: 815 MLNLSWAEMGIIGDLPATV 759
>emb|CU633438.1| Podospora anserina genomic DNA chromosome 1, supercontig 1
Length = 3103080
Score = 56.2 bits (134), Expect = 4e-06, Method: Composition-based stats.
Identities = 55/139 (39%), Positives = 72/139 (51%), Gaps = 1/139 (0%)
Frame = +3
Query: 5 RVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRISTTC 64
RVGS VPT + PPG AY S+L S LR T+R+ G+ ++ P S V T PGRIS +
Sbjct: 2833068 RVGSMRVPTPIRPPGTAYFSSLASELRDTIRLKMGVHLRSPLSSRV----TMPGRISISS 2833235
Query: 65 PTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMWRRYSS-RXS 123
P+L L S+S +PGLL S +R T+M G+GM +S S
Sbjct: 2833236 PSLSRP*RTEPPATPPLSSSIS-APGLLTSNDRMTIMWGSMEKSLGGMGMVLTIASLMAS 2833412
Query: 124 TLRFSCAEIGTIGTFNAML 142
L S AE+G IG A +
Sbjct: 2833413 MLNLSWAEMGIIGDLPATV 2833469
>emb|BX817816.1|CNS0AB86 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL43ZC08 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 1477
Score = 55.8 bits (133), Expect = 4e-06, Method: Composition-based stats.
Identities = 56/143 (39%), Positives = 73/143 (51%), Gaps = 1/143 (0%)
Frame = -2
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S RV+ GS VVPT + PPG A S+ SA +R G+ + P LV T PGRI
Sbjct: 1059 SARVKFGSIVVPTPIRPPGTAN*SSFCSA*SEMMRDLIGVHFEWPRSFLV----TIPGRI 892
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMW-RRYS 119
S TL L S S PGLL SK+R T++ G + +GIG++ YS
Sbjct: 891 SINWLTLKTPRRKLPPATPPLISSTS-*PGLLTSKDRITIIFGGNTKFLSGIGIFLTMYS 715
Query: 120 SRXSTLRFSCAEIGTIGTFNAML 142
+ L FSCA+ GTIG +A +
Sbjct: 714 HTTTMLYFSCAKKGTIGAASATV 646
>gb|BT030491.1| Bos taurus eukaryotic translation initiation factor 2, subunit 3
gamma, 52kDa (EIF2S3), mRNA, complete cds
Length = 1936
Score = 55.8 bits (133), Expect = 5e-06, Method: Composition-based stats.
Identities = 65/168 (38%), Positives = 79/168 (47%), Gaps = 2/168 (1%)
Frame = -2
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R +VGS VPT + PPG AY +L SA T+ GL + P SL T PG
Sbjct: 1050 SARHKVGSIFVPTPIRPPGAAY*RSLCSAKSDTILEKIGLHMSFPSLSL----ETIPGLT 883
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGM-WRRYS 119
S + PT LR S S PGLL SK+ T+ G G+ + YS
Sbjct: 882 SISWPTFNTPFRILPPATPPLRSSTS-QPGLLTSKDLITISLGSEVKSLGGTGIFFTMYS 706
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILFC 166
S L FS AEIG IG +A + AR S A+ S T+SILFC
Sbjct: 705 QTTSILYFS*AEIGIIGAPSATVP*TNARICS*CSLAWLSFTKSILFC 562
>ref|XM_001214623.1| Aspergillus terreus NIH2624 eukaryotic translation initiation factor
2 gamma subunit (ATEG_05445) partial mRNA
Length = 1536
Score = 55.5 bits (132), Expect = 5e-06, Method: Composition-based stats.
Identities = 68/168 (40%), Positives = 84/168 (50%), Gaps = 2/168 (1%)
Frame = -2
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R RVGS+ VPT + PPG A +L SA R T R G P S V T+PGRI
Sbjct: 1178 SARQRVGSTRVPTPIRPPGTANLRSLCSANRETTREKMGRHWILPFSSFV----TRPGRI 1011
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMW-RRYS 119
S + + R S+S +PGLL SKER T+M A RTG GM RYS
Sbjct: 1010 SISSFSFSTPVRMEPPATPPFRSSIS-APGLLTSKERMTIM*GEAVKSRTGTGMCDTRYS 834
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLSKXARTWRYUSC-AFTSPTRSILFC 166
S L FS AE+G +G +A + + + C A +S RS LFC
Sbjct: 833 LTASMLYFSWAEMGIMGEPSATVPRMNFRIDW*CCRAPSSRIRSTLFC 690
>ref|XM_001540316.1| Ajellomyces capsulatus NAm1 eukaryotic translation initiation factor
2 gamma subunit (HCAG_04206) partial mRNA
Length = 1515
Score = 55.5 bits (132), Expect = 6e-06, Method: Composition-based stats.
Identities = 58/145 (40%), Positives = 73/145 (50%), Gaps = 1/145 (0%)
Frame = -2
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R VGS+ VPT M PPG A + SA R R+ G P SLV T PGRI
Sbjct: 1157 SARQSVGSTRVPTPMRPPGTANFRSFCSARREMTRLKMGRHWILPCSSLV----TIPGRI 990
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMW-RRYS 119
S + P+L R S+S +PGLL S +R +M A+ RTG GM RYS
Sbjct: 989 SISSPSLSTPVRILPPATPPRRSSIS-APGLLTSNDRMMIMCGAAWKSRTGTGMCDTRYS 813
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLSK 144
S L F+ AE+G IG +A + +
Sbjct: 812 LTASMLYFNWAEMGMIGDPSATVPR 738
>emb|CU227742.1| Populus EST from severe drought-stressed leaves
Length = 1371
Score = 55.1 bits (131), Expect = 8e-06, Method: Composition-based stats.
Identities = 50/129 (38%), Positives = 63/129 (48%), Gaps = 1/129 (0%)
Frame = -2
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S RV+VGS VVPT + PPG A CS+ SA T+ V+ G+ P S + PGR
Sbjct: 374 SARVKVGSMVVPTPIRPPGTANCSSFCSAYNDTILVYIGVHFMLPASSFTM----IPGRT 207
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMWRR-YS 119
S T L S S PGLL SK+R T+M G + +GIG++ YS
Sbjct: 206 SIN*LTFKTPLRMLPPATPPLISSTS-YPGLLTSKDRITIMLGGEIKFLSGIGIFLTIYS 30
Query: 120 SRXSTLRFS 128
S L FS
Sbjct: 29 HTTSMLYFS 3
>ref|XM_002296319.1| Thalassiosira pseudonana CCMP1335 chromosome 7 translation initiation
factor eIF-2, gamma subunit (THAPS_7322) mRNA, complete
cds
Length = 1452
Score = 54.3 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 61/170 (35%), Positives = 80/170 (47%), Gaps = 4/170 (2%)
Frame = -2
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S RV VGS VPT ++PPG AY +L SA ++ +R GL P S T PG
Sbjct: 1091 SARVNVGSIRVPTPINPPGTAY*RSLLSAYKLEIRENMGLHTTVVPPSSFSFLVTIPGLT 912
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMW-RRYS 119
S + PTL R ++ PGL SK R T+ R TG G+ +YS
Sbjct: 911 SISSPTLSTPCKMDPPATPPCRL-LTSCPGLFTSKLRMTINRGTLVKSLTGTGIL*TKYS 735
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLSKXARTWRYUSC---AFTSPTRSILFC 166
STL F+ A IG +G +A + +R SC A + T+S LFC
Sbjct: 734 QTRSTLYFNTALIGKMGALSATVP--TTNFRICSCCAIAASILTKSTLFC 591
>gb|CP001160.1| Thalassiosira pseudonana CCMP1335 chromosome 7, complete sequence
Length = 1992434
Score = 54.3 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 61/170 (35%), Positives = 80/170 (47%), Gaps = 4/170 (2%)
Frame = +2
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S RV VGS VPT ++PPG AY +L SA ++ +R GL P S T PG
Sbjct: 1917191 SARVNVGSIRVPTPINPPGTAY*RSLLSAYKLEIRENMGLHTTVVPPSSFSFLVTIPGLT 1917370
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMW-RRYS 119
S + PTL R ++ PGL SK R T+ R TG G+ +YS
Sbjct: 1917371 SISSPTLSTPCKMDPPATPPCRL-LTSCPGLFTSKLRMTINRGTLVKSLTGTGIL*TKYS 1917547
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLSKXARTWRYUSC---AFTSPTRSILFC 166
STL F+ A IG +G +A + +R SC A + T+S LFC
Sbjct: 1917548 QTRSTLYFNTALIGKMGALSATVP--TTNFRICSCCAIAASILTKSTLFC 1917691
>gb|CP000505.1| Thermofilum pendens Hrk 5, complete genome
Length = 1781889
Score = 54.3 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 50/143 (34%), Positives = 69/143 (48%), Gaps = 1/143 (0%)
Frame = +1
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S V +GS VVPTA SPPG A+ S LR + V++G P +++ PG I
Sbjct: 510850 SALVTLGSRVVPTATSPPGYAFSSGWSPVLREVMVVYTGS*TSCPSFLILM-----PGLI 511014
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMWRRYS- 119
S +CPT RS + PGLL SK+R T + G G+GM+ +
Sbjct: 511015 SISCPT-SNLP*TIVPPSTPPTRSFALVPGLLTSKDRITNILGGLEKSLLGVGMYSSIAH 511191
Query: 120 SRXSTLRFSCAEIGTIGTFNAML 142
+R S A+ GTIG F+A +
Sbjct: 511192 TRASMFALCSADTGTIGAFSAQV 511260
>ref|NM_001073765.1| Oryza sativa (japonica cultivar-group) Os12g0607100 (Os12g0607100)
mRNA, complete cds
Length = 2077
Score = 54.3 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 56/143 (39%), Positives = 72/143 (50%), Gaps = 1/143 (0%)
Frame = -1
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S RV+VGS VVPT + PPG A S+ SA T+ G+ + P S + T PGR
Sbjct: 1291 SARVKVGSMVVPTPIRPPGTANWSSFCSA*SETILE*IGVHLMLPLSSFI----TMPGRT 1124
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGM-WRRYS 119
S TL L S S PGLL SKER T+M G + +G+G+ + YS
Sbjct: 1123 SMFWFTLKTPLRMLPPATPPLISSTS-EPGLLTSKERMTIMFGGEVKFLSGMGIFFTMYS 947
Query: 120 SRXSTLRFSCAEIGTIGTFNAML 142
S L S A+IGT G +AM+
Sbjct: 946 HITSMLYLS*ADIGTTGAPSAMV 878
>dbj|AK122105.1| Oryza sativa Japonica Group cDNA clone:J033126A16, full insert
sequence
Length = 2078
Score = 54.3 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 56/143 (39%), Positives = 72/143 (50%), Gaps = 1/143 (0%)
Frame = -1
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S RV+VGS VVPT + PPG A S+ SA T+ G+ + P S + T PGR
Sbjct: 1292 SARVKVGSMVVPTPIRPPGTANWSSFCSA*SETILE*IGVHLMLPLSSFI----TMPGRT 1125
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGM-WRRYS 119
S TL L S S PGLL SKER T+M G + +G+G+ + YS
Sbjct: 1124 SMFWFTLKTPLRMLPPATPPLISSTS-EPGLLTSKERMTIMFGGEVKFLSGMGIFFTMYS 948
Query: 120 SRXSTLRFSCAEIGTIGTFNAML 142
S L S A+IGT G +AM+
Sbjct: 947 HITSMLYLS*ADIGTTGAPSAMV 879
>dbj|AK061482.1| Oryza sativa Japonica Group cDNA clone:006-308-H02, full insert
sequence
Length = 1072
Score = 54.3 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 56/143 (39%), Positives = 72/143 (50%), Gaps = 1/143 (0%)
Frame = -1
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S RV+VGS VVPT + PPG A S+ SA T+ G+ + P S + T PGR
Sbjct: 508 SARVKVGSMVVPTPIRPPGTANWSSFCSA*SETILE*IGVHLMLPLSSFI----TMPGRT 341
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGM-WRRYS 119
S TL L S S PGLL SKER T+M G + +G+G+ + YS
Sbjct: 340 SMFWFTLKTPLRMLPPATPPLISSTS-EPGLLTSKERMTIMFGGEVKFLSGMGIFFTMYS 164
Query: 120 SRXSTLRFSCAEIGTIGTFNAML 142
S L S A+IGT G +AM+
Sbjct: 163 HITSMLYLS*ADIGTTGAPSAMV 95
>gb|EF678455.1| Picea sitchensis clone WS02922_I23 unknown mRNA
Length = 2005
Score = 54.3 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 62/170 (36%), Positives = 82/170 (48%), Gaps = 4/170 (2%)
Frame = -2
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S RV VGS VVPT + PPG A C++ SA + G+ + P SL T PGR
Sbjct: 1245 SARVSVGSIVVPTPIRPPGTANCNSFCSA*SEIILEKMGVHLMLPLSSLT----TMPGRT 1078
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIG-MWRRYS 119
S T S S +PGL SK+ T++ G+ R+G+G ++ YS
Sbjct: 1077 SIF*FTFNTPFSILPPATPPFISSTS-APGLFTSKDLITIILGGSTKLRSGMGILFVMYS 901
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLSKXARTWRYUSC---AFTSPTRSILFC 166
S L F+CA+IGT G +AM+ + SC A S RSILFC
Sbjct: 900 QTTSMLYFNCADIGTTGAPSAMVP--WINF*IASCWLIATLSWIRSILFC 757
>gb|EF676456.1| Picea sitchensis clone WS02738_E16 unknown mRNA
Length = 1929
Score = 54.3 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 62/170 (36%), Positives = 82/170 (48%), Gaps = 4/170 (2%)
Frame = -2
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S RV VGS VVPT + PPG A C++ SA + G+ + P SL T PGR
Sbjct: 1196 SARVSVGSIVVPTPIRPPGTANCNSFCSA*SEIILEKMGVHLMLPLSSLT----TMPGRT 1029
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIG-MWRRYS 119
S T S S +PGL SK+ T++ G+ R+G+G ++ YS
Sbjct: 1028 SIF*FTFNTPFSILPPATPPFISSTS-APGLFTSKDLITIILGGSTKLRSGMGILFVMYS 852
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLSKXARTWRYUSC---AFTSPTRSILFC 166
S L F+CA+IGT G +AM+ + SC A S RSILFC
Sbjct: 851 QTTSMLYFNCADIGTTGAPSAMVP--WINF*IASCWLIATLSWIRSILFC 708
>emb|CR380955.2| Candida glabrata strain CBS138 chromosome I complete sequence
Length = 1100349
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 61/164 (37%), Positives = 80/164 (48%), Gaps = 2/164 (1%)
Frame = -1
Query: 5 RVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRISTTC 64
+VGS+ VPT + PPG A + SA R T+ GL P SLV T PG IS +
Sbjct: 813318 KVGSTFVPTPIRPPGTANFKSFCSANRETMLEKIGLHWILPLSSLV----TIPGLISISS 813151
Query: 65 PTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMWRRYSS-RXS 123
P L + S+S +PGLL SKER T+ R + G G+ +S S
Sbjct: 813150 PNLNTPFKMEPPATPPFKSSIS-APGLLTSKERMTIKRGESMKSLGGTGIVFTINSLTAS 812974
Query: 124 TLRFSCAEIGTIGTFNAMLSKXA-RTWRYUSCAFTSPTRSILFC 166
L F+ AEIGTIG +A++ R S A +S +S LFC
Sbjct: 812973 MLYFN*AEIGTIGAPSAIVPLINFRIDFSCSSALSSRIKSTLFC 812842
>ref|XM_447610.1| Candida glabrata CBS138 hypothetical protein (CAGL0I08327g) partial
mRNA
Length = 1557
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 61/164 (37%), Positives = 80/164 (48%), Gaps = 2/164 (1%)
Frame = -2
Query: 5 RVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRISTTC 64
+VGS+ VPT + PPG A + SA R T+ GL P SLV T PG IS +
Sbjct: 1196 KVGSTFVPTPIRPPGTANFKSFCSANRETMLEKIGLHWILPLSSLV----TIPGLISISS 1029
Query: 65 PTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMWRRYSS-RXS 123
P L + S+S +PGLL SKER T+ R + G G+ +S S
Sbjct: 1028 PNLNTPFKMEPPATPPFKSSIS-APGLLTSKERMTIKRGESMKSLGGTGIVFTINSLTAS 852
Query: 124 TLRFSCAEIGTIGTFNAMLSKXA-RTWRYUSCAFTSPTRSILFC 166
L F+ AEIGTIG +A++ R S A +S +S LFC
Sbjct: 851 MLYFN*AEIGTIGAPSAIVPLINFRIDFSCSSALSSRIKSTLFC 720
>ref|XM_453532.1| Kluyveromyces lactis NRRL Y-1140, KLLA0D10571g hypothetical protein
partial mRNA
Length = 1563
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 63/163 (38%), Positives = 80/163 (49%), Gaps = 2/163 (1%)
Frame = -2
Query: 6 VGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRISTTCP 65
VGS++VPT + PPG A +L SA R T+ GL P SLV T PG IS + P
Sbjct: 1193 VGSTLVPTPIKPPGTANFRSLCSANRETILEKIGLH*ILP*SSLV----TIPGLISISSP 1026
Query: 66 TLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIG-MWRRYSSRXST 124
L + S+S +PGLL SKER T+ A G G ++ S S
Sbjct: 1025 NLKTPVKMEPPATPPFKSSIS-APGLLTSKERMTINLGDAKKSL*GTGILFTMNSFTASM 849
Query: 125 LRFSCAEIGTIGTFNAMLSKXARTWRY-USCAFTSPTRSILFC 166
L F+ AEIGTIG +AM+ + S A +S RS LFC
Sbjct: 848 LYFNWAEIGTIGAPSAMVPLINFKIDF*CSRAESSLIRSTLFC 720
>emb|CR382124.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome D complete sequence
Length = 1715506
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 63/163 (38%), Positives = 80/163 (49%), Gaps = 2/163 (1%)
Frame = +1
Query: 6 VGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRISTTCP 65
VGS++VPT + PPG A +L SA R T+ GL P SLV T PG IS + P
Sbjct: 898666 VGSTLVPTPIKPPGTANFRSLCSANRETILEKIGLH*ILP*SSLV----TIPGLISISSP 898833
Query: 66 TLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIG-MWRRYSSRXST 124
L + S+S +PGLL SKER T+ A G G ++ S S
Sbjct: 898834 NLKTPVKMEPPATPPFKSSIS-APGLLTSKERMTINLGDAKKSL*GTGILFTMNSFTASM 899010
Query: 125 LRFSCAEIGTIGTFNAMLSKXARTWRY-USCAFTSPTRSILFC 166
L F+ AEIGTIG +AM+ + S A +S RS LFC
Sbjct: 899011 LYFNWAEIGTIGAPSAMVPLINFKIDF*CSRAESSLIRSTLFC 899139
>ref|XM_001093771.1| PREDICTED: Macaca mulatta similar to eukaryotic translation
initiation factor 2, subunit 3, structural gene X-linked
(LOC705415), mRNA
Length = 2549
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 51/133 (38%), Positives = 64/133 (48%), Gaps = 1/133 (0%)
Frame = -1
Query: 5 RVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRISTTC 64
+VGS VPT + PPG AYC +L SA T+ GL + P SL T PG S +
Sbjct: 491 KVGSIFVPTPIKPPGAAYCRSLCSAKSDTILEKIGLHMSFPSLSL----ETIPGLTSISW 324
Query: 65 PTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGM-WRRYSSRXS 123
PT LR S S PGLL SK+ T+ R + G G+ + YS S
Sbjct: 323 PTFNTPFRILPPATPPLRSSTS-QPGLLTSKDLITISRGSEVNSLGGTGIFFTMYSQTTS 147
Query: 124 TLRFSCAEIGTIG 136
L F+ AEIG +G
Sbjct: 146 MLYFN*AEIGIMG 108
>ref|XM_656982.1| Aspergillus nidulans FGSC A4 hypothetical protein AN4470.2 partial
mRNA
Length = 1545
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 57/145 (39%), Positives = 73/145 (50%), Gaps = 1/145 (0%)
Frame = -2
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R RVGS+ VPT ++PPG A +L SA + T R G P SLV T+PGRI
Sbjct: 1187 SARQRVGSTRVPTPINPPGTANFRSLCSANKDTTREKIGRHWILPFSSLV----TRPGRI 1020
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMWR-RYS 119
S + L S+S +PGL SK+R T+M A RTG GM RYS
Sbjct: 1019 SISSFNLRTPVKMEPPATPPFSSSIS-APGLFTSKDRITIM*GDAVKSRTGTGMCETRYS 843
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLSK 144
S L S AE+G +G +A + +
Sbjct: 842 LTASMLYLS*AEMGMMGEPSATVPR 768
>emb|AJ290965.1|LDE290965 Leptinotarsa decemlineata partial mRNA for heterochromatin protein
(Su(var)3-9 gene)
Length = 2875
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 59/169 (34%), Positives = 80/169 (47%), Gaps = 3/169 (1%)
Frame = -3
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R VGS VPT + PPG A CS+ SA + T+ G V P SL+ T+PG
Sbjct: 2516 SARQSVGSIFVPTPIRPPGTANCSSFCSANKDTILEKMGRQVNFPSGSLL----TRPGLT 2349
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMWR-RYS 119
S + PTL L RS + PGLL S + T+ R +G G++ YS
Sbjct: 2348 SIS*PTLSTPLKILPPATPPL-RSFTSQPGLLTSNDLITIRRGSDVKSLSGTGIFFIMYS 2172
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLSKXARTWRYUSCAFTSP--TRSILFC 166
+ S L F+ A++G +G +A + C+ P TRSILFC
Sbjct: 2171 HKTSVLYFN*ADMGIMGAPSATVP-*TNFTICSCCSLACPSFTRSILFC 2028
>emb|AJ290964.1|LDE290964 Leptinotarsa decemlineata mRNA for eukaryotic translation initiation
factor 2 gamma (eIF-2g gene)
Length = 1577
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 59/169 (34%), Positives = 80/169 (47%), Gaps = 3/169 (1%)
Frame = -1
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R VGS VPT + PPG A CS+ SA + T+ G V P SL+ T+PG
Sbjct: 1085 SARQSVGSIFVPTPIRPPGTANCSSFCSANKDTILEKMGRQVNFPSGSLL----TRPGLT 918
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMWR-RYS 119
S + PTL L RS + PGLL S + T+ R +G G++ YS
Sbjct: 917 SIS*PTLSTPLKILPPATPPL-RSFTSQPGLLTSNDLITIRRGSDVKSLSGTGIFFIMYS 741
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLSKXARTWRYUSCAFTSP--TRSILFC 166
+ S L F+ A++G +G +A + C+ P TRSILFC
Sbjct: 740 HKTSVLYFN*ADMGIMGAPSATVP-*TNFTICSCCSLACPSFTRSILFC 597
>gb|EF085085.1| Picea sitchensis clone WS02910_N24 unknown mRNA
Length = 1901
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 53/143 (37%), Positives = 72/143 (50%), Gaps = 1/143 (0%)
Frame = -2
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S RV VGS VVPT + PPG A C++ SA + G+ + P SL T PGR
Sbjct: 1300 SARVSVGSIVVPTPIRPPGTANCNSFCSA*SEIILEKIGVHLMLPFSSLT----TMPGRT 1133
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIG-MWRRYS 119
S T S S +PGL SK+ T++ G+ +R+G+G ++ YS
Sbjct: 1132 SIF*FTFNTPFSILPPATPPFISSTS-APGLFTSKDLITIILGGSTKFRSGMGILFTMYS 956
Query: 120 SRXSTLRFSCAEIGTIGTFNAML 142
S L FSCA+IGT G +AM+
Sbjct: 955 QTTSMLYFSCADIGTTGAPSAMV 887
>ref|XR_035891.2| PREDICTED: Equus caballus misc_RNA (LOC100057368), miscRNA
Length = 1893
Score = 53.1 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 66/168 (39%), Positives = 78/168 (46%), Gaps = 2/168 (1%)
Frame = -2
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R +VGS VPT + PPG AY +L S+ R + GL V P SL T PG
Sbjct: 1508 SARHKVGSIFVPTPIRPPGAAY*RSLCSSKRDAILEKIGLNVSFPSLSL----ETIPGLT 1341
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGM-WRRYS 119
S + PT LR S S PGLL SK TV G G+ + YS
Sbjct: 1340 SISWPTFNTPFRMLPPATPPLRSSTS-QPGLLTSKYLITVS*GSEVKSLEGTGIFFAMYS 1164
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILFC 166
S L FS AEIG IG +A + AR Y S A+ T+SILFC
Sbjct: 1163 QTASILYFS*AEIGIIGASSATVPCTNARICSYCSLAWLF-TKSILFC 1023
>ref|XR_030332.1| PREDICTED: Monodelphis domestica similar to translation initiation
factor eIF-2 gamma subunit (LOC100016859), mRNA
Length = 1520
Score = 53.1 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 41/100 (41%), Positives = 50/100 (50%)
Frame = -3
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R +VGS VPT + PPG AYC +L SA T+ GL + P SL T PG
Sbjct: 1152 SARHKVGSIFVPTPIRPPGAAYCRSLCSAKSDTILEKIGLHMSFPSLSL----ETMPGLT 985
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTV 100
S +CPT LR S S PGLL SK++ T+
Sbjct: 984 SNSCPTFNTPLRILPPATPPLRSSTS-QPGLLTSKDQITI 868
>gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome
Length = 5751492
Score = 53.1 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 62/164 (37%), Positives = 81/164 (49%), Gaps = 2/164 (1%)
Frame = -2
Query: 4 VRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRISTT 63
VRVGS VPTA SPPG+A + + A + V G+ + P + PG IS++
Sbjct: 4549184 VRVGSR*VPTARSPPGVASSTFVGPA*MDEIVVTIGIHLVLPSVVTFI-----PGLISSS 4549020
Query: 64 CPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMW-RRYSSRX 122
P R S +PGLLMSK+R M G + TG+G+W R S R
Sbjct: 4549019 SPG*STPSVRVPPITPP-RISSIEAPGLLMSKDRAINMLAGLSTLCTGVGIWVSRASIRT 4548843
Query: 123 STLRFSCAEIGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILF 165
S L F AEIG IG F+A + + W S +F+ TRSILF
Sbjct: 4548842 SMLIFCWAEIGIIGAFSATVPLTNSFIWW*FSTSFSLDTRSILF 4548711
>ref|NM_202838.1| Arabidopsis thaliana eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative (AT4G18330) mRNA, complete cds
Length = 1659
Score = 52.8 bits (125), Expect = 4e-05, Method: Composition-based stats.
Identities = 56/143 (39%), Positives = 69/143 (48%), Gaps = 1/143 (0%)
Frame = -2
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S RV VGS VVPT + PPG A S+ SA +R G+ + P SL + PG I
Sbjct: 1145 SARVSVGSMVVPTPIRPPGTAN*SSFCSAYSEVIRE*IGVHFEFPCSSLPV----IPGLI 978
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMW-RRYS 119
S + T S PGLL SKER T++ G TGIG++ YS
Sbjct: 977 SISWFTFKTPWRILPPATPPF-IS*PAEPGLLTSKERITIIFGGDTKSLTGIGIFLTMYS 801
Query: 120 SRXSTLRFSCAEIGTIGTFNAML 142
S L FSCAE GTIG +A +
Sbjct: 800 LTTSMLYFSCAETGTIGASSAFV 732
>ref|XM_001681230.1| Leishmania major translation initiation factor eif-2b gamma subunit,
putative (LmjF09.1090) partial mRNA
Length = 1806
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 63/190 (33%), Positives = 80/190 (42%), Gaps = 25/190 (13%)
Frame = -2
Query: 2 CRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVL---------- 51
CRVR GSSVVP AM PPG A C++ FSA T V SG P
Sbjct: 1142 CRVRDGSSVVPIAMRPPGTANCNSFFSAWSRTTVVRSGTAYSSPGGGEAT*ANSRPDKTS 963
Query: 52 ----------RERTKPGRISTTCPTLMXXXXXXXXXXXXLRRSMSPS---PGLLMSKERT 98
R + PG IS + PT L + +PS PG SKER+
Sbjct: 962 ARLGSTPSRRRSTSSPGMISISSPTHKTPAATVPPMTPPL-SAFAPSPAGPGSDTSKERS 786
Query: 99 TVMRTGAFSWRTGIGMWRRYSSRXSTLRFSCAEIGTIG--TFNAMLSKXARTWRYUSCAF 156
T M S R G GM R SS+ CA++G G + ++++ Y + A
Sbjct: 785 TFMYCAWCSCRRGRGMCTR*SSKKLMFACCCAQMGITGALAYAVLVAR*W*IMLYCAAAR 606
Query: 157 TSPTRSILFC 166
+ TRS LFC
Sbjct: 605 SLLTRSTLFC 576
>ref|XM_001112836.1| PREDICTED: Macaca mulatta similar to eukaryotic translation
initiation factor 2, subunit 3 gamma, 52kDa, transcript
variant 2 (LOC716052), mRNA
Length = 2584
Score = 52.4 bits (124), Expect = 6e-05, Method: Composition-based stats.
Identities = 62/168 (36%), Positives = 76/168 (45%), Gaps = 2/168 (1%)
Frame = -3
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R +VGS VPT + PG AYC + SA T+ GL + P L T PG +
Sbjct: 1052 SARHKVGSIFVPTPIRLPGAAYCRS*CSAKSDTILEKIGLHMSFPSLFL----ETIPGLL 885
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGM-WRRYS 119
PT LR S S PGLL SK+ T+ R G+ + YS
Sbjct: 884 CPAWPTFNTPFSILPPATPPLRSSTS-QPGLLTSKDLITISRGSEVKSLGDTGIFFTMYS 708
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILFC 166
S L FS AEIG +G +A + AR Y S A S T+SILFC
Sbjct: 707 QTTSILYFS*AEIGIMGAPSATVPWTNARICLYCSLA*LSFTKSILFC 564
>gb|AE014187.1| Plasmodium falciparum 3D7 chromosome 14, complete sequence
Length = 3291006
Score = 52.0 bits (123), Expect = 6e-05, Method: Composition-based stats.
Identities = 59/170 (34%), Positives = 75/170 (44%), Gaps = 4/170 (2%)
Frame = -1
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S V++GS +VPT +SPPG AY LFSA + GL V P S + PG I
Sbjct: 428223 SALVKIGSILVPTPISPPGTAYFKLLFSANIERICEMIGLHVISPLSSFDI----IPGLI 428056
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGM-WRRYS 119
S PT + S+S SPGL S ER T++ GI + YS
Sbjct: 428055 SILSPTFNTPCNILPPATPPCKVSIS-SPGLFTSNERITIICGDDIKSLLGILI*VTIYS 427879
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLSKXARTWRYUSCAF---TSPTRSILFC 166
S L F A IG IG +A + + + SC F +S S LFC
Sbjct: 427878 QTTSILYFKTALIGIIGALSAAVPE--TKFLISSCCFNACSSLINSTLFC 427735
>ref|XM_001348241.1| Plasmodium falciparum 3D7 eukaryotic translation initiation factor 2
gamma subunit, putative (PF14_0104) partial mRNA
Length = 1398
Score = 52.0 bits (123), Expect = 6e-05, Method: Composition-based stats.
Identities = 59/170 (34%), Positives = 75/170 (44%), Gaps = 4/170 (2%)
Frame = -2
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S V++GS +VPT +SPPG AY LFSA + GL V P S + PG I
Sbjct: 1034 SALVKIGSILVPTPISPPGTAYFKLLFSANIERICEMIGLHVISPLSSFDI----IPGLI 867
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGM-WRRYS 119
S PT + S+S SPGL S ER T++ GI + YS
Sbjct: 866 SILSPTFNTPCNILPPATPPCKVSIS-SPGLFTSNERITIICGDDIKSLLGILI*VTIYS 690
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLSKXARTWRYUSCAF---TSPTRSILFC 166
S L F A IG IG +A + + + SC F +S S LFC
Sbjct: 689 QTTSILYFKTALIGIIGALSAAVPE--TKFLISSCCFNACSSLINSTLFC 546
>gb|BT013206.1| Lycopersicon esculentum clone 134415F, mRNA sequence
Length = 1794
Score = 52.0 bits (123), Expect = 6e-05, Method: Composition-based stats.
Identities = 51/155 (32%), Positives = 73/155 (47%), Gaps = 13/155 (8%)
Frame = -1
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S RV VGS VVPT M PPG A S+ SA T+ + G+ + P S T PGRI
Sbjct: 1143 SARVNVGSIVVPTPMRPPGTAN*SSFCSANNDTILEYIGVHLMLPLSSFT----TIPGRI 976
Query: 61 ST-----TCPTLMXXXXXXXXXXXXLRRSMSP-------SPGLLMSKERTTVMRTGAFSW 108
S + P ++ + +P PGL S +R T++ G +
Sbjct: 975 SIS*LTFSTPCIISLIAEIEKDAFKILPPATPPLISSTSKPGLFTSNDRITIIFGGEMKF 796
Query: 109 RTGIGMWRR-YSSRXSTLRFSCAEIGTIGTFNAML 142
+G+G++ YS S L F+CA+IGT G +A +
Sbjct: 795 LSGMGIFFTIYSQTTSMLYFNCADIGTTGAPSATV 691
>ref|XM_363666.2| Magnaporthe grisea 70-15 hypothetical protein (MGG_01592) partial
mRNA
Length = 1542
Score = 51.6 bits (122), Expect = 7e-05, Method: Composition-based stats.
Identities = 57/163 (34%), Positives = 79/163 (48%), Gaps = 2/163 (1%)
Frame = -2
Query: 6 VGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRISTTCP 65
VGS VPT + PPG AY S+L S + T+ + G+ + P S V T PG IS + P
Sbjct: 1169 VGSMRVPTPIRPPGTAYLSSLASEFKDTILLKIGVHWRSPLSSRV----TMPGLISISSP 1002
Query: 66 TLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIG-MWRRYSSRXST 124
+ R S+S +PGLL SK+R T++ G G + S+ ST
Sbjct: 1001 SFNIPCKILPPATPPFRSSIS-APGLLTSKDRITII*GSTEKSLGGTGTVLTMASTTAST 825
Query: 125 LRFSCAEIGTIGTFNAMLSKXARTWRYUSC-AFTSPTRSILFC 166
L SCAE+G +G F A + + C A +S +S LFC
Sbjct: 824 LNLSCAEMGMMGLFPATVPLINFRMDW*CC*AASSLIKSTLFC 696
>ref|XM_001794019.1| Phaeosphaeria nodorum SN15 hypothetical protein partial mRNA
Length = 1789
Score = 51.6 bits (122), Expect = 8e-05, Method: Composition-based stats.
Identities = 55/145 (37%), Positives = 69/145 (47%), Gaps = 1/145 (0%)
Frame = -3
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R RVGS+ VPT + PPG A +L SA + T GL P S T PG I
Sbjct: 1145 SARHRVGSTRVPTPIKPPGTANFRSLCSANKDTTLEKMGLHWILPALSF----DTIPGLI 978
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIG-MWRRYS 119
S + P L S+S +PGLL S +R T+M A RTG G + R S
Sbjct: 977 SISSPNLSTPVKILPPATPPFSSSIS-APGLLTSNDRMTIMWGFAEKSRTGTGILLMRCS 801
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLSK 144
S L FS AE+G IG +A + +
Sbjct: 800 LMESMLNFSWAEMGMIGDPSATVPR 726
>ref|XR_045590.1| PREDICTED: Sus scrofa misc_RNA (LOC100151974), miscRNA
Length = 1404
Score = 51.6 bits (122), Expect = 9e-05, Method: Composition-based stats.
Identities = 60/166 (36%), Positives = 74/166 (44%), Gaps = 2/166 (1%)
Frame = -2
Query: 3 RVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRIST 62
R +VGS VPT + PG AY +L S T+ GL + P S T PG S
Sbjct: 1052 RHKVGSIFVPTPIRAPGAAY*RSLCSTKSDTILEKIGLHMSFPSQSF----ETIPGLTSI 885
Query: 63 TCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMWRR-YSSR 121
+ PT LR S + PGLL SK+ T+ R G++ YS
Sbjct: 884 SWPTFNPPFKILPPAIPPLR*SSTSQPGLLTSKDLITISRGSEVKSLRDTGIFFTIYSQT 705
Query: 122 XSTLRFSCAEIGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILFC 166
S L FS AEIG IG + + AR Y S A S T+SILFC
Sbjct: 704 TSILYFS*AEIGIIGAPSVTVPCTNARICSYCSLA*LSFTKSILFC 567
>ref|XM_001707652.1| Giardia lamblia ATCC 50803 Translation initiation factor 2 gamma
subunit (GL50803_2970) partial mRNA
Length = 1437
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 66/172 (38%), Positives = 81/172 (47%), Gaps = 6/172 (3%)
Frame = -2
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S RV GS VP AMSPPGMA S+ SAL + V G P S ++ PGRI
Sbjct: 1049 SWRVYEGSMKVPMAMSPPGMA*RSSFSSALMEIIFVMRG*HEHLPVFSFMM---VYPGRI 879
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIG-MWRRYS 119
ST P+L SMS PGLL SKER T+ G+ R GIG ++ +
Sbjct: 878 STVSPSLNMP*RSVPPATPPRMLSMS-YPGLLTSKERITMKSGGSVRSRFGIGSLFTMWW 702
Query: 120 SRXSTLRFSCAEIGTIG---TFNAMLS--KXARTWRYUSCAFTSPTRSILFC 166
S STL A++G + FN M W + SC+ RSILFC
Sbjct: 701 STRSTLYPLTADVGMMWGFLVFNDMFR*LTIC*WWLFASCSL---MRSILFC 555
>gb|EU028334.1| Lactuca sativa EIF2 gamma protein mRNA, partial cds
Length = 1400
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 56/143 (39%), Positives = 71/143 (49%), Gaps = 1/143 (0%)
Frame = -1
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S RVRVGS +VPT PPG A S+ SA +R + + + P SLV T PG I
Sbjct: 1031 SARVRVGSILVPTPNRPPGTAN*SSF*SA*SEMMREYIEVHFELPRSSLV----TIPGLI 864
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMW-RRYS 119
S TL L S S PGLL SK+R T++ G + +GI ++ YS
Sbjct: 863 SINWLTLKTPRRILPPATPPLISSTS-*PGLLTSKDRITIIFGGDTKFLSGIVIFLTMYS 687
Query: 120 SRXSTLRFSCAEIGTIGTFNAML 142
S L FSCAE TIG +A +
Sbjct: 686 HTTSMLYFSCAETETIGAASATV 618
>gb|AY087392.1| Arabidopsis thaliana clone 34867 mRNA, complete sequence
Length = 1537
Score = 40.4 bits (93), Expect(2) = 1e-04, Method: Composition-based stats.
Identities = 28/55 (50%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Frame = -2
Query: 89 PGLLMSKERTTVMRTGAFSWRTGIGMW-RRYSSRXSTLRFSCAEIGTIGTFNAML 142
PGLL SKER T++ G TGIG++ YS S L FSCAE GTIG +A +
Sbjct: 849 PGLLTSKERITIIFGGDTKSLTGIGIFLTMYSLTTSMLYFSCAETGTIGASSAFV 685
Score = 30.4 bits (67), Expect(2) = 1e-04, Method: Composition-based stats.
Identities = 22/49 (44%), Positives = 27/49 (55%)
Frame = -3
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSL 49
S RV VGS VVPT + PPG A S+ SA +R G+ + P SL
Sbjct: 1085 SARVSVGSMVVPTPIRPPGTAN*SSFCSAYSEVIRE*IGVHFEFPCSSL 939
>ref|XM_626738.1| Cryptosporidium parvum Iowa II eIF2G GTpase. eukaryotic translation
initiation factor 2 gamma subunit (ZnR+GTpase)
(cgd3_1650) mRNA, partial cds
Length = 1425
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 59/164 (35%), Positives = 75/164 (45%), Gaps = 2/164 (1%)
Frame = -2
Query: 4 VRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRISTT 63
V+VGS VPT +SPP AY +L SA R+T+ GL V P SL+ PG S +
Sbjct: 1049 VKVGSIFVPTPISPPETAYFKSLCSAKRLTILDLIGLQVNSPSASLL----*MPGLTSIS 882
Query: 64 CPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMWRR-YSSRX 122
P L L S SPGL SK+ ++ G+G+ + YS R
Sbjct: 881 SPILRTPLIIDPPATPPLIF*AS-SPGLFTSKDLIIIILGDDVKSLIGMGICVQIYSQRT 705
Query: 123 STLRFSCAEIGTIGTFNAML-SKXARTWRYUSCAFTSPTRSILF 165
S L F AEIG IG A + + + Y SCA S S LF
Sbjct: 704 SMLNFKTAEIGIIGASCAEVPATKSLICLYCSCA*ASLINSTLF 573
>gb|AC025716.2| Caenorhabditis elegans cosmid Y39G10AR, complete sequence
Length = 132558
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 48/120 (40%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Frame = -2
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S R VGS VPT M PPG AY S FSA R ++R G P V T PGR
Sbjct: 33620 SPRQSVGSIFVPTPMRPPGTAYSSWFFSANRESIREKIGRHWS*P----VAVFETIPGRT 33453
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMW-RRYS 119
S +CPT + S S PGLL S +R + R G RTG G++ +RYS
Sbjct: 33452 SISCPTRRIPLVNVPPATPPFKFSTS-DPGLLTSNDRIMMRRAGDLKSRTGTGIFLQRYS 33276
>ref|XM_001385096.1| Pichia stipitis CBS 6054 hypothetical protein partial mRNA
Length = 1653
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 57/166 (34%), Positives = 81/166 (48%), Gaps = 4/166 (2%)
Frame = -2
Query: 5 RVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRISTTC 64
+VGS++VPT ++PPG A +L SA + T+ GL P S V T PG IS +
Sbjct: 1199 KVGSTLVPTPINPPGTANFKSLCSANKDTILEKIGLH*ILPLSSFV----TIPGLISISS 1032
Query: 65 PTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMWRRYSSRX-- 122
P L + S+S +PGLL SK+ T+ A G GM ++
Sbjct: 1031 PILKTPLKIDPPATPPFKSSIS-APGLLTSKDLMTINLGEAEKSLGGTGM--EFTIN*LT 861
Query: 123 -STLRFSCAEIGTIGTFNAMLSK-XARTWRYUSCAFTSPTRSILFC 166
S L F+ AEIGTIG +A++ + + S A +S +S LFC
Sbjct: 860 ASMLYFNWAEIGTIGAPSAIVPLINVKIDFWCSKADSSLIKSTLFC 723
>gb|CP000499.1| Pichia stipitis CBS 6054 chromosome 5, complete sequence
Length = 1725948
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 57/166 (34%), Positives = 81/166 (48%), Gaps = 4/166 (2%)
Frame = +1
Query: 5 RVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRISTTC 64
+VGS++VPT ++PPG A +L SA + T+ GL P S V T PG IS +
Sbjct: 675280 KVGSTLVPTPINPPGTANFKSLCSANKDTILEKIGLH*ILPLSSFV----TIPGLISISS 675447
Query: 65 PTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMWRRYSSRX-- 122
P L + S+S +PGLL SK+ T+ A G GM ++
Sbjct: 675448 PILKTPLKIDPPATPPFKSSIS-APGLLTSKDLMTINLGEAEKSLGGTGM--EFTIN*LT 675618
Query: 123 -STLRFSCAEIGTIGTFNAMLSK-XARTWRYUSCAFTSPTRSILFC 166
S L F+ AEIGTIG +A++ + + S A +S +S LFC
Sbjct: 675619 ASMLYFNWAEIGTIGAPSAIVPLINVKIDFWCSKADSSLIKSTLFC 675756
>ref|NM_117943.2| Arabidopsis thaliana eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative (AT4G18330) mRNA, complete cds
Length = 1646
Score = 40.4 bits (93), Expect(2) = 1e-04, Method: Composition-based stats.
Identities = 28/55 (50%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Frame = -1
Query: 89 PGLLMSKERTTVMRTGAFSWRTGIGMW-RRYSSRXSTLRFSCAEIGTIGTFNAML 142
PGLL SKER T++ G TGIG++ YS S L FSCAE GTIG +A +
Sbjct: 896 PGLLTSKERITIIFGGDTKSLTGIGIFLTMYSLTTSMLYFSCAETGTIGASSAFV 732
Score = 29.6 bits (65), Expect(2) = 1e-04, Method: Composition-based stats.
Identities = 22/49 (44%), Positives = 27/49 (55%)
Frame = -2
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSL 49
S RV VGS VVPT + PPG A S+ SA +R G+ + P SL
Sbjct: 1132 SARVSVGSMVVPTPIRPPGTAN*SSFCSAYSEVIRE*IGVHFEFPCSSL 986
>ref|XM_661743.1| Cryptosporidium hominis TU502 translation initiation factor eIF-2
(Chro.30199) partial mRNA
Length = 1392
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 59/164 (35%), Positives = 75/164 (45%), Gaps = 2/164 (1%)
Frame = -2
Query: 4 VRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRISTT 63
V+VGS VPT +SPP AY +L SA R+T+ GL V P SL+ PG S +
Sbjct: 1016 VKVGSIFVPTPISPPETAYFKSLCSAKRLTILDLIGLQVNSPSASLL----*IPGLTSIS 849
Query: 64 CPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMWRR-YSSRX 122
P L L S SPGL SK+ ++ G+G+ + YS R
Sbjct: 848 SPILRTPLIIDPPATPPLIF*AS-SPGLFTSKDLIIIILGDDVKSLIGMGICVQIYSQRT 672
Query: 123 STLRFSCAEIGTIGTFNAML-SKXARTWRYUSCAFTSPTRSILF 165
S L F AEIG IG A + + + Y SCA S S LF
Sbjct: 671 SMLNFKTAEIGIIGASCAEVPATKSLICLYCSCA*ASLINSTLF 540
>ref|XM_001643484.1| Vanderwaltozyma polyspora DSM 70294 hypothetical protein
(Kpol_1008p14) partial mRNA
Length = 1584
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 58/163 (35%), Positives = 77/163 (47%), Gaps = 2/163 (1%)
Frame = -2
Query: 6 VGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRISTTCP 65
VGS++VPT + PPG A + SA + T+ GL P SLV T PG IS + P
Sbjct: 1214 VGSTLVPTPIKPPGTANFKSFCSANKDTMLEKIGLH*ILPLSSLV----TIPGLISISSP 1047
Query: 66 TLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMWRRYSS-RXST 124
L + S+S PGLL S ER T+ R G G+ +S S
Sbjct: 1046 NLKTPFKIEPPATPPFKPSIS-VPGLLTSNERITIKRGEIMKSLGGTGIVLTINSLTASM 870
Query: 125 LRFSCAEIGTIGTFNAMLSKXARTWRYU-SCAFTSPTRSILFC 166
L F+ AEIGTIG +A++ + S A +S +S LFC
Sbjct: 869 LYFN*AEIGTIGAPSAIVPLINFKIDFSCSNALSSLIKSTLFC 741
>gb|U18778.1|SCE9537 Saccharomyces cerevisiae chromosome V cosmids 9537, 9581, 9495, 9867,
and lambda clone 5898
Length = 66030
Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 58/164 (35%), Positives = 79/164 (48%), Gaps = 2/164 (1%)
Frame = -2
Query: 5 RVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRISTTC 64
+VGS++VPT + PPG A + SA + T+ GL P SLV T PG IS +
Sbjct: 54557 KVGSTLVPTPIRPPGTANFKSFCSANKETMLEKIGLH*ILPLSSLV----TIPGLISISS 54390
Query: 65 PTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMWRRYSS-RXS 123
P L R S+S +PGLL S ER T+ G G+ +S S
Sbjct: 54389 PNLKTPFKIEPPATPPFRSSIS-APGLLTSNERITINLGEIIKSLGGTGIVLTINSLTAS 54213
Query: 124 TLRFSCAEIGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILFC 166
L F+ A+IGTIG +AM+ + + S A +S +S LFC
Sbjct: 54212 MLYFN*ADIGTIGAPSAMVPLMNFKMDFWCSKALSSRIKSTLFC 54081
>gb|L04268.1|YSCGCD11NR Saccharomyces cerevisiae negative regulator of GCN4 (GCD11) gene,
complete cds
Length = 2647
Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 58/164 (35%), Positives = 79/164 (48%), Gaps = 2/164 (1%)
Frame = -1
Query: 5 RVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRISTTC 64
+VGS++VPT + PPG A + SA + T+ GL P SLV T PG IS +
Sbjct: 1675 KVGSTLVPTPIRPPGTANFKSFCSANKETMLEKIGLH*ILPLSSLV----TIPGLISISS 1508
Query: 65 PTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMWRRYSS-RXS 123
P L R S+S +PGLL S ER T+ G G+ +S S
Sbjct: 1507 PNLKTPFKIEPPATPPFRSSIS-APGLLTSNERITINLGEIIKSLGGTGIVLTINSLTAS 1331
Query: 124 TLRFSCAEIGTIGTFNAMLS-KXARTWRYUSCAFTSPTRSILFC 166
L F+ A+IGTIG +AM+ + + S A +S +S LFC
Sbjct: 1330 MLYFN*ADIGTIGAPSAMVPLMNFKMDFWCSKALSSRIKSTLFC 1199
>ref|XM_002260856.1| Plasmodium knowlesi strain H eukaryotic translation initiation factor
(PKH_133710) mRNA, complete cds
Length = 1398
Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 59/170 (34%), Positives = 74/170 (43%), Gaps = 4/170 (2%)
Frame = -2
Query: 1 SCRVRVGSSVVPTAMSPPGMAYCSTLFSALRVTVRVFSGLXVKRPPCSLVLRERTKPGRI 60
S V++GS VPT ++PPG AY LFSA + GL V P SL PG I
Sbjct: 1034 SALVKIGSIRVPTPINPPGTAYFKLLFSANMDNICDMIGLQVISPFSSL----EIIPGLI 867
Query: 61 STTCPTLMXXXXXXXXXXXXLRRSMSPSPGLLMSKERTTVMRTGAFSWRTGIGMW-RRYS 119
S PT S+S SPGLL S +R T++ GI + YS
Sbjct: 866 SILSPTFNTPCRILPPATPPCNVSIS-SPGLLTSNDRITIICGDDMKSLFGILICVTMYS 690
Query: 120 SRXSTLRFSCAEIGTIGTFNAMLSKXARTWRYUSCAF---TSPTRSILFC 166
S L F A IG IG +A + + + SC F +S S LFC
Sbjct: 689 HTTSMLYFKTALIGMIGALSAAVPE--TKFLISSCCFKACSSLINSTLFC 546
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.337 0.140 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 584952685
Number of extensions: 8536131
Number of successful extensions: 65282
Number of sequences better than 10: 33
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 65209
Number of HSP's successfully gapped: 35
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 15 (7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (19.6 bits)
S2: 78 (34.7 bits)
Query= gi|154333023|ref|NC_009301.1|:subseq(421455,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 9
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
ref|XM_001562677.1| Leishmania braziliensis MHOM/BR/75/M2904 euk... 152 3e-35
emb|AM494946.1| Leishmania braziliensis chromosome 9 152 3e-35
ref|XM_001463533.1| Leishmania infantum JPCM5 eukaryotic transla... 75 1e-11
emb|AM502227.1| Leishmania infantum chromosome 9 75 1e-11
ref|XM_001681229.1| Leishmania major eukaryotic translation init... 69 4e-10
>ref|XM_001562677.1| Leishmania braziliensis MHOM/BR/75/M2904 eukaryotic translation
initiation factor 2 subunit, putative (LbrM09_V2.1130)
partial mRNA
Length = 1440
Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats.
Identities = 130/166 (78%), Positives = 130/166 (78%)
Frame = -3
Query: 1 PVALGSDRASCRRRUVHQGWRTVARYSPPUEXPCVSSADCRUSGRLVRWCSVSAPSQDGS 60
PVALGSDRASCRRR VHQGWRTVARYSPP E PCVSSADCR SGRLVRWCSVSAPSQDGS
Sbjct: 1072 PVALGSDRASCRRR*VHQGWRTVARYSPP*E*PCVSSADCR*SGRLVRWCSVSAPSQDGS 893
Query: 61 XXXXXXXXXXXUQCHQPRRLXGAQCRPHPACUCQRSARXXXXXXXXXXXXXXXXXXDTLV 120
QCHQPRRL GAQCRPHPAC CQRSAR DTLV
Sbjct: 892 PPPAPL**HPA*QCHQPRRL*GAQCRPHPAC*CQRSARPSCAPAPLAGAPASGCGGDTLV 713
Query: 121 DNPRCASAAPKSARSAHSTRCCPSRRGPGGTDRAPLPRPQGQSCSA 166
DNPRCASAAPKSARSAHSTRCCPSRRGPGGTDRAPLPRPQGQSCSA
Sbjct: 712 DNPRCASAAPKSARSAHSTRCCPSRRGPGGTDRAPLPRPQGQSCSA 575
>emb|AM494946.1| Leishmania braziliensis chromosome 9
Length = 556710
Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats.
Identities = 130/166 (78%), Positives = 130/166 (78%)
Frame = +3
Query: 1 PVALGSDRASCRRRUVHQGWRTVARYSPPUEXPCVSSADCRUSGRLVRWCSVSAPSQDGS 60
PVALGSDRASCRRR VHQGWRTVARYSPP E PCVSSADCR SGRLVRWCSVSAPSQDGS
Sbjct: 421458 PVALGSDRASCRRR*VHQGWRTVARYSPP*E*PCVSSADCR*SGRLVRWCSVSAPSQDGS 421637
Query: 61 XXXXXXXXXXXUQCHQPRRLXGAQCRPHPACUCQRSARXXXXXXXXXXXXXXXXXXDTLV 120
QCHQPRRL GAQCRPHPAC CQRSAR DTLV
Sbjct: 421638 PPPAPL**HPA*QCHQPRRL*GAQCRPHPAC*CQRSARPSCAPAPLAGAPASGCGGDTLV 421817
Query: 121 DNPRCASAAPKSARSAHSTRCCPSRRGPGGTDRAPLPRPQGQSCSA 166
DNPRCASAAPKSARSAHSTRCCPSRRGPGGTDRAPLPRPQGQSCSA
Sbjct: 421818 DNPRCASAAPKSARSAHSTRCCPSRRGPGGTDRAPLPRPQGQSCSA 421955
>ref|XM_001463533.1| Leishmania infantum JPCM5 eukaryotic translation initiation factor 2
subunit, putative (LinJ09.1130) partial mRNA
Length = 1440
Score = 74.7 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 72/149 (48%), Positives = 80/149 (53%)
Frame = -3
Query: 18 QGWRTVARYSPPUEXPCVSSADCRUSGRLVRWCSVSAPSQDGSXXXXXXXXXXXUQCHQP 77
Q WRT RYSPP PC SA R SGR RW VSAP QDGS HQP
Sbjct: 1021 QEWRTAVRYSPP*A*PCAFSAGYR*SGRPARWSCVSAPGQDGSPPPVPP**RLA*LSHQP 842
Query: 78 RRLXGAQCRPHPACUCQRSARXXXXXXXXXXXXXXXXXXDTLVDNPRCASAAPKSARSAH 137
R G+QCRP AC C+++AR TL +PRCASAAP+SA+SAH
Sbjct: 841 RHPSGSQCRPRLAC*CRKNARLSCAPAPSAGAPASGCGGGTLGGSPRCASAAPRSAQSAH 662
Query: 138 STRCCPSRRGPGGTDRAPLPRPQGQSCSA 166
S RCC RR GGT R P P Q +SC A
Sbjct: 661 SRRCCRGRREHGGTGRVPSPHRQDRSCFA 575
>emb|AM502227.1| Leishmania infantum chromosome 9
Length = 570592
Score = 74.7 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 72/149 (48%), Positives = 80/149 (53%)
Frame = +2
Query: 18 QGWRTVARYSPPUEXPCVSSADCRUSGRLVRWCSVSAPSQDGSXXXXXXXXXXXUQCHQP 77
Q WRT RYSPP PC SA R SGR RW VSAP QDGS HQP
Sbjct: 428657 QEWRTAVRYSPP*A*PCAFSAGYR*SGRPARWSCVSAPGQDGSPPPVPP**RLA*LSHQP 428836
Query: 78 RRLXGAQCRPHPACUCQRSARXXXXXXXXXXXXXXXXXXDTLVDNPRCASAAPKSARSAH 137
R G+QCRP AC C+++AR TL +PRCASAAP+SA+SAH
Sbjct: 428837 RHPSGSQCRPRLAC*CRKNARLSCAPAPSAGAPASGCGGGTLGGSPRCASAAPRSAQSAH 429016
Query: 138 STRCCPSRRGPGGTDRAPLPRPQGQSCSA 166
S RCC RR GGT R P P Q +SC A
Sbjct: 429017 SRRCCRGRREHGGTGRVPSPHRQDRSCFA 429103
>ref|XM_001681229.1| Leishmania major eukaryotic translation initiation factor 2 subunit,
putative (LmjF09.1070) partial mRNA
Length = 1440
Score = 68.9 bits (167), Expect = 4e-10, Method: Composition-based stats.
Identities = 75/149 (50%), Positives = 81/149 (54%)
Frame = -3
Query: 18 QGWRTVARYSPPUEXPCVSSADCRUSGRLVRWCSVSAPSQDGSXXXXXXXXXXXUQCHQP 77
Q WRT RYSPP E PC SA CR SG RW VSAP + GS CHQP
Sbjct: 1021 QEWRTAVRYSPP*E*PCAFSAGCR*SGCPARWSCVSAPGRGGSPPPAPP**HPA*LCHQP 842
Query: 78 RRLXGAQCRPHPACUCQRSARXXXXXXXXXXXXXXXXXXDTLVDNPRCASAAPKSARSAH 137
+QCRPH AC CQ SAR TL +PRCASAAP+SA+SAH
Sbjct: 841 PHPSDSQCRPHLAC*CQTSARPSCVLAPSVGAPASGCGGGTLGGSPRCASAAPRSAQSAH 662
Query: 138 STRCCPSRRGPGGTDRAPLPRPQGQSCSA 166
S RCC RR GGT R P P QG+SCSA
Sbjct: 661 SRRCCRGRRAHGGTGRVPSPHRQGRSCSA 575
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.328 0.135 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 730938647
Number of extensions: 14497466
Number of successful extensions: 279521
Number of sequences better than 10: 30
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 278352
Number of HSP's successfully gapped: 45
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 15 (7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.0 bits)
S2: 78 (34.7 bits)
Query= gi|154333023|ref|NC_009301.1|:subseq(446277,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 9:[revcomp]
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
ref|XM_001562597.1| Leishmania braziliensis MHOM/BR/75/M2904 hyp... 210 1e-52
emb|AM494946.1| Leishmania braziliensis chromosome 9 210 1e-52
ref|XM_001463448.1| Leishmania infantum JPCM5 hypothetical prote... 88 1e-15
emb|AM502227.1| Leishmania infantum chromosome 9 88 1e-15
ref|XM_001681152.1| Leishmania major hypothetical protein, conse... 77 2e-12
ref|XM_001463449.1| Leishmania infantum JPCM5 hypothetical prote... 72 6e-11
ref|XM_001562598.1| Leishmania braziliensis MHOM/BR/75/M2904 hyp... 70 2e-10
ref|XM_001681153.1| Leishmania major hypothetical protein, conse... 63 3e-08
ref|XM_001562599.1| Leishmania braziliensis MHOM/BR/75/M2904 hyp... 56 3e-06
ref|XM_001463450.1| Leishmania infantum JPCM5 hypothetical prote... 52 4e-05
ref|XM_001681154.1| Leishmania major hypothetical protein, conse... 47 0.002
emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome comple... 39 0.61
>ref|XM_001562597.1| Leishmania braziliensis MHOM/BR/75/M2904 hypothetical protein,
conserved (LbrM09_V2.0310) partial mRNA
Length = 2352
Score = 210 bits (534), Expect = 1e-52, Method: Composition-based stats.
Identities = 135/166 (81%), Positives = 135/166 (81%)
Frame = -3
Query: 1 GCPAAAHQTQSPGGGRCCGAPARPAGETGCCSWSKSSRPAPAPRRSVYRGUWTGSQXXXX 60
GCPAAAHQTQSPGGGRCCGAPARPAGETGCCSWSKSSRPAPAPRRSVYRG WTGSQ
Sbjct: 2182 GCPAAAHQTQSPGGGRCCGAPARPAGETGCCSWSKSSRPAPAPRRSVYRG*WTGSQRRRA 2003
Query: 61 XXXXXXXXXXXXXXXXXXXXXXXXXHEVSLETSLSCAPQXFGSAPRPSVRPARHRHSKDY 120
HEVSLETSLSCAPQ FGSAPRPSVRPARHRHSKDY
Sbjct: 2002 GPRRASA**RAAAAHA*QRRLQSAQHEVSLETSLSCAPQ*FGSAPRPSVRPARHRHSKDY 1823
Query: 121 GHAGTLSVLCTQGYTWWTQDRKLPSVAQTHPADRIQLPSPPGLTSS 166
GHAGTLSVLCTQGYTWWTQDRKLPSVAQTHPADRIQLPSPPGLTSS
Sbjct: 1822 GHAGTLSVLCTQGYTWWTQDRKLPSVAQTHPADRIQLPSPPGLTSS 1685
>emb|AM494946.1| Leishmania braziliensis chromosome 9
Length = 556710
Score = 210 bits (534), Expect = 1e-52, Method: Composition-based stats.
Identities = 135/166 (81%), Positives = 135/166 (81%)
Frame = -1
Query: 1 GCPAAAHQTQSPGGGRCCGAPARPAGETGCCSWSKSSRPAPAPRRSVYRGUWTGSQXXXX 60
GCPAAAHQTQSPGGGRCCGAPARPAGETGCCSWSKSSRPAPAPRRSVYRG WTGSQ
Sbjct: 110433 GCPAAAHQTQSPGGGRCCGAPARPAGETGCCSWSKSSRPAPAPRRSVYRG*WTGSQRRRA 110254
Query: 61 XXXXXXXXXXXXXXXXXXXXXXXXXHEVSLETSLSCAPQXFGSAPRPSVRPARHRHSKDY 120
HEVSLETSLSCAPQ FGSAPRPSVRPARHRHSKDY
Sbjct: 110253 GPRRASA**RAAAAHA*QRRLQSAQHEVSLETSLSCAPQ*FGSAPRPSVRPARHRHSKDY 110074
Query: 121 GHAGTLSVLCTQGYTWWTQDRKLPSVAQTHPADRIQLPSPPGLTSS 166
GHAGTLSVLCTQGYTWWTQDRKLPSVAQTHPADRIQLPSPPGLTSS
Sbjct: 110073 GHAGTLSVLCTQGYTWWTQDRKLPSVAQTHPADRIQLPSPPGLTSS 109936
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 50/56 (89%), Positives = 51/56 (91%)
Frame = -1
Query: 1 GCPAAAHQTQSPGGGRCCGAPARPAGETGCCSWSKSSRPAPAPRRSVYRGUWTGSQ 56
GCPAAAHQTQSPGGGRCCGAPARPAGETG SWSKSSRPAPA RSVY+G WTGSQ
Sbjct: 115548 GCPAAAHQTQSPGGGRCCGAPARPAGETGSYSWSKSSRPAPAQSRSVYQG*WTGSQ 115381
Score = 56.2 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 39/50 (78%), Positives = 39/50 (78%)
Frame = -2
Query: 1 GCPAAAHQTQSPGGGRCCGAPARPAGETGCCSWSKSSRPAPAPRRSVYRG 50
GC AAAHQTQSP GRCC APARPAGETG SWSKSSRPAPA RS R
Sbjct: 120944 GCLAAAHQTQSPADGRCCAAPARPAGETGSYSWSKSSRPAPAQSRSSGRA 120795
>ref|XM_001463448.1| Leishmania infantum JPCM5 hypothetical protein, conserved
(LinJ09.0280) partial mRNA
Length = 2760
Score = 87.8 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 74/175 (42%), Positives = 86/175 (49%), Gaps = 17/175 (9%)
Frame = -3
Query: 1 GCPAAAHQTQSPGGGRCCGAPARPAGETGCCSWSKSSRPAPAPRRSVYRGUWTGSQXXXX 60
GCPAA HQ SPGGGRCCGAPARPAG TG CSWS+SSRPAPAPRRS +RG WTGSQ
Sbjct: 2590 GCPAAVHQRLSPGGGRCCGAPARPAGGTGSCSWSRSSRPAPAPRRSAHRG*WTGSQRRRA 2411
Query: 61 XXXXXXXXXXXXXXXXXXXXXXXXXHEVSLETSLSCAPQXFGSAPRPSVRPARHRHSKDY 120
+ +LE+ C Q SAPRP+V R KD
Sbjct: 2410 GQRRARVGSAAAAARV*RRQLQSAQDDAALESRPRCVSQEPASAPRPAVPCPNPRGLKDC 2231
Query: 121 GHAGTLSVLCTQGYTW-----------------WTQDRKLPSVAQTHPADRIQLP 158
+ + +L G WTQ + P +A+THPAD Q P
Sbjct: 2230 EYVRSFRLLHAHGAVTRWSLSSSLWSRPQSSRRWTQRTRFPVIARTHPADWAQPP 2066
>emb|AM502227.1| Leishmania infantum chromosome 9
Length = 570592
Score = 87.8 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 74/175 (42%), Positives = 86/175 (49%), Gaps = 17/175 (9%)
Frame = -3
Query: 1 GCPAAAHQTQSPGGGRCCGAPARPAGETGCCSWSKSSRPAPAPRRSVYRGUWTGSQXXXX 60
GCPAA HQ SPGGGRCCGAPARPAG TG CSWS+SSRPAPAPRRS +RG WTGSQ
Sbjct: 96026 GCPAAVHQRLSPGGGRCCGAPARPAGGTGSCSWSRSSRPAPAPRRSAHRG*WTGSQRRRA 95847
Query: 61 XXXXXXXXXXXXXXXXXXXXXXXXXHEVSLETSLSCAPQXFGSAPRPSVRPARHRHSKDY 120
+ +LE+ C Q SAPRP+V R KD
Sbjct: 95846 GQRRARVGSAAAAARV*RRQLQSAQDDAALESRPRCVSQEPASAPRPAVPCPNPRGLKDC 95667
Query: 121 GHAGTLSVLCTQGYTW-----------------WTQDRKLPSVAQTHPADRIQLP 158
+ + +L G WTQ + P +A+THPAD Q P
Sbjct: 95666 EYVRSFRLLHAHGAVTRWSLSSSLWSRPQSSRRWTQRTRFPVIARTHPADWAQPP 95502
Score = 72.0 bits (175), Expect = 6e-11, Method: Composition-based stats.
Identities = 47/55 (85%), Positives = 49/55 (89%)
Frame = -3
Query: 1 GCPAAAHQTQSPGGGRCCGAPARPAGETGCCSWSKSSRPAPAPRRSVYRGUWTGS 55
GCPAAAHQ SPGGGRCCGAPARPAG TG CSWS+SSRPAPAPRRS +RG WTGS
Sbjct: 101153 GCPAAAHQRLSPGGGRCCGAPARPAGGTGSCSWSRSSRPAPAPRRSAHRG*WTGS 100989
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 36/50 (72%), Positives = 37/50 (74%)
Frame = -3
Query: 1 GCPAAAHQTQSPGGGRCCGAPARPAGETGCCSWSKSSRPAPAPRRSVYRG 50
GCPAAAHQ S GRCC APARPAG TG CSWS+SSRPAPA RS R
Sbjct: 106421 GCPAAAHQRLSSADGRCCAAPARPAGGTGFCSWSRSSRPAPAQSRSSGRA 106272
>ref|XM_001681152.1| Leishmania major hypothetical protein, conserved (LmjF09.0320)
partial mRNA
Length = 2757
Score = 76.6 bits (187), Expect = 2e-12, Method: Composition-based stats.
Identities = 47/56 (83%), Positives = 49/56 (87%)
Frame = -3
Query: 1 GCPAAAHQTQSPGGGRCCGAPARPAGETGCCSWSKSSRPAPAPRRSVYRGUWTGSQ 56
GCPAAAHQ SPGGGRCCGAPA PAG TG CSWS+SSRPAPAPRRS +RG WTGSQ
Sbjct: 2587 GCPAAAHQRLSPGGGRCCGAPALPAGGTGSCSWSRSSRPAPAPRRSAHRG*WTGSQ 2420
>ref|XM_001463449.1| Leishmania infantum JPCM5 hypothetical protein, conserved
(LinJ09.0290) partial mRNA
Length = 2550
Score = 72.0 bits (175), Expect = 6e-11, Method: Composition-based stats.
Identities = 47/55 (85%), Positives = 49/55 (89%)
Frame = -3
Query: 1 GCPAAAHQTQSPGGGRCCGAPARPAGETGCCSWSKSSRPAPAPRRSVYRGUWTGS 55
GCPAAAHQ SPGGGRCCGAPARPAG TG CSWS+SSRPAPAPRRS +RG WTGS
Sbjct: 2395 GCPAAAHQRLSPGGGRCCGAPARPAGGTGSCSWSRSSRPAPAPRRSAHRG*WTGS 2231
>ref|XM_001562598.1| Leishmania braziliensis MHOM/BR/75/M2904 hypothetical protein,
conserved (LbrM09_V2.0320) partial mRNA
Length = 2538
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 50/56 (89%), Positives = 51/56 (91%)
Frame = -3
Query: 1 GCPAAAHQTQSPGGGRCCGAPARPAGETGCCSWSKSSRPAPAPRRSVYRGUWTGSQ 56
GCPAAAHQTQSPGGGRCCGAPARPAGETG SWSKSSRPAPA RSVY+G WTGSQ
Sbjct: 2407 GCPAAAHQTQSPGGGRCCGAPARPAGETGSYSWSKSSRPAPAQSRSVYQG*WTGSQ 2240
>ref|XM_001681153.1| Leishmania major hypothetical protein, conserved (LmjF09.0330)
partial mRNA
Length = 2541
Score = 62.8 bits (151), Expect = 3e-08, Method: Composition-based stats.
Identities = 46/56 (82%), Positives = 48/56 (85%)
Frame = -3
Query: 1 GCPAAAHQTQSPGGGRCCGAPARPAGETGCCSWSKSSRPAPAPRRSVYRGUWTGSQ 56
GCPAAAHQ SPGGGRCCGAPA PAG T CSWS+SSRPAPAPRRS +RG WTGSQ
Sbjct: 2386 GCPAAAHQRLSPGGGRCCGAPALPAGGTESCSWSRSSRPAPAPRRSAHRG*WTGSQ 2219
>ref|XM_001562599.1| Leishmania braziliensis MHOM/BR/75/M2904 hypothetical protein,
conserved (LbrM09_V2.0330) partial mRNA
Length = 3093
Score = 56.2 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 39/50 (78%), Positives = 39/50 (78%)
Frame = -3
Query: 1 GCPAAAHQTQSPGGGRCCGAPARPAGETGCCSWSKSSRPAPAPRRSVYRG 50
GC AAAHQTQSP GRCC APARPAGETG SWSKSSRPAPA RS R
Sbjct: 2917 GCLAAAHQTQSPADGRCCAAPARPAGETGSYSWSKSSRPAPAQSRSSGRA 2768
>ref|XM_001463450.1| Leishmania infantum JPCM5 hypothetical protein, conserved
(LinJ09.0300) partial mRNA
Length = 2982
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 36/50 (72%), Positives = 37/50 (74%)
Frame = -3
Query: 1 GCPAAAHQTQSPGGGRCCGAPARPAGETGCCSWSKSSRPAPAPRRSVYRG 50
GCPAAAHQ S GRCC APARPAG TG CSWS+SSRPAPA RS R
Sbjct: 2809 GCPAAAHQRLSSADGRCCAAPARPAGGTGFCSWSRSSRPAPAQSRSSGRA 2660
>ref|XM_001681154.1| Leishmania major hypothetical protein, conserved (LmjF09.0340)
partial mRNA
Length = 3195
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 32/46 (69%), Positives = 33/46 (71%)
Frame = -3
Query: 1 GCPAAAHQTQSPGGGRCCGAPARPAGETGCCSWSKSSRPAPAPRRS 46
GCPAAAHQ S GRCC AP PAG TG CSWS+SSRP PA RS
Sbjct: 2938 GCPAAAHQRLSSADGRCCAAPVLPAGGTGSCSWSRSSRPVPAQSRS 2801
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence
Length = 3716413
Score = 38.9 bits (89), Expect = 0.61, Method: Composition-based stats.
Identities = 22/43 (51%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Frame = +1
Query: 5 AAHQTQSPGGGRCCGAPARPAGETGC-CSWSKSSRPAPAPRRS 46
A + SPG CG P RPAG C +W++S+RPAPA RRS
Sbjct: 2166754 ARRRRPSPGSPGGCGRP-RPAGLRNCGWTWTRSARPAPAGRRS 2166879
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.319 0.132 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 687241396
Number of extensions: 13597557
Number of successful extensions: 172653
Number of sequences better than 10: 50
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 171642
Number of HSP's successfully gapped: 65
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 16 (7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 78 (34.7 bits)
Query= gi|154333023|ref|NC_009301.1|:subseq(446277,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 9:[revcomp]
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
ref|XM_001562597.1| Leishmania braziliensis MHOM/BR/75/M2904 hyp... 297 7e-79
emb|AM494946.1| Leishmania braziliensis chromosome 9 297 7e-79
ref|XM_001681152.1| Leishmania major hypothetical protein, conse... 142 3e-32
ref|XM_001463448.1| Leishmania infantum JPCM5 hypothetical prote... 136 2e-30
emb|AM502227.1| Leishmania infantum chromosome 9 136 2e-30
ref|XM_001562598.1| Leishmania braziliensis MHOM/BR/75/M2904 hyp... 133 2e-29
ref|XM_001463449.1| Leishmania infantum JPCM5 hypothetical prote... 111 6e-23
ref|XM_001681153.1| Leishmania major hypothetical protein, conse... 108 7e-22
ref|XM_001562599.1| Leishmania braziliensis MHOM/BR/75/M2904 hyp... 82 4e-14
ref|XM_001463450.1| Leishmania infantum JPCM5 hypothetical prote... 71 9e-11
ref|XM_001681154.1| Leishmania major hypothetical protein, conse... 67 2e-09
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 37 1.8
emb|AL606655.3|OSJN00103 Oryza sativa genomic DNA, chromosome 4,... 37 1.8
gb|AC110690.6| Rattus norvegicus BAC CH230-290M8 (Children's Ho... 37 2.3
gb|AC124450.3| Mus musculus BAC clone RP24-215C4 from chromosome... 37 2.7
gb|AC123857.4| Mus musculus BAC clone RP23-344L21 from chromosom... 37 2.7
emb|CU062644.16| M.truncatula DNA sequence from clone MTH2-155M7... 37 2.8
gb|AC147563.4| Mus musculus BAC clone RP23-231H21 from chromosom... 36 3.3
gb|AC122810.4| Mus musculus BAC clone RP23-276H4 from chromosome... 36 3.3
dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 36 5.3
>ref|XM_001562597.1| Leishmania braziliensis MHOM/BR/75/M2904 hypothetical protein,
conserved (LbrM09_V2.0310) partial mRNA
Length = 2352
Score = 297 bits (761), Expect = 7e-79, Method: Composition-based stats.
Identities = 165/166 (99%), Positives = 165/166 (99%)
Frame = -1
Query: 1 DALLRHTKRSHQAAEDVVALRRGQRAKQDAVAGVKVVDQHPHLVVAYIEGDGLVVKGGAQ 60
DALLRHTKRSHQAAEDVVALRRGQRAKQDAVAGVKVVDQHPHLVVAYIEGDGLVVKGGAQ
Sbjct: 2181 DALLRHTKRSHQAAEDVVALRRGQRAKQDAVAGVKVVDQHPHLVVAYIEGDGLVVKGGAQ 2002
Query: 61 GHVERARDEGLQQRTRDSVGFNQLNTRFLWRQVCLALHNNSALHHDLLFGLQGTVTQRTT 120
GHVERARDEGLQQRTRDSVGFNQLNTRFLWRQVCLALHNNSALHHDLLFGLQGTVTQRTT
Sbjct: 2001 GHVERARDEGLQQRTRDSVGFNQLNTRFLWRQVCLALHNNSALHHDLLFGLQGTVTQRTT 1822
Query: 121 ATLAPSQCCAPRVTRGGRRTESFHRSRRPILQTGYSFPRPQAURVH 166
ATLAPSQCCAPRVTRGGRRTESFHRSRRPILQTGYSFPRPQA RVH
Sbjct: 1821 ATLAPSQCCAPRVTRGGRRTESFHRSRRPILQTGYSFPRPQA*RVH 1684
>emb|AM494946.1| Leishmania braziliensis chromosome 9
Length = 556710
Score = 297 bits (761), Expect = 7e-79, Method: Composition-based stats.
Identities = 165/166 (99%), Positives = 165/166 (99%)
Frame = -2
Query: 1 DALLRHTKRSHQAAEDVVALRRGQRAKQDAVAGVKVVDQHPHLVVAYIEGDGLVVKGGAQ 60
DALLRHTKRSHQAAEDVVALRRGQRAKQDAVAGVKVVDQHPHLVVAYIEGDGLVVKGGAQ
Sbjct: 110432 DALLRHTKRSHQAAEDVVALRRGQRAKQDAVAGVKVVDQHPHLVVAYIEGDGLVVKGGAQ 110253
Query: 61 GHVERARDEGLQQRTRDSVGFNQLNTRFLWRQVCLALHNNSALHHDLLFGLQGTVTQRTT 120
GHVERARDEGLQQRTRDSVGFNQLNTRFLWRQVCLALHNNSALHHDLLFGLQGTVTQRTT
Sbjct: 110252 GHVERARDEGLQQRTRDSVGFNQLNTRFLWRQVCLALHNNSALHHDLLFGLQGTVTQRTT 110073
Query: 121 ATLAPSQCCAPRVTRGGRRTESFHRSRRPILQTGYSFPRPQAURVH 166
ATLAPSQCCAPRVTRGGRRTESFHRSRRPILQTGYSFPRPQA RVH
Sbjct: 110072 ATLAPSQCCAPRVTRGGRRTESFHRSRRPILQTGYSFPRPQA*RVH 109935
Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats.
Identities = 75/79 (94%), Positives = 77/79 (97%)
Frame = -2
Query: 1 DALLRHTKRSHQAAEDVVALRRGQRAKQDAVAGVKVVDQHPHLVVAYIEGDGLVVKGGAQ 60
DALLRHTKRSHQAAEDVVALRRGQRAKQD +AGVKVVDQHPH VVAYI+GDGLVVKGGAQ
Sbjct: 115547 DALLRHTKRSHQAAEDVVALRRGQRAKQDLIAGVKVVDQHPHRVVAYIKGDGLVVKGGAQ 115368
Query: 61 GHVERARDEGLQQRTRDSV 79
GHVERARDEGLQQRTRDSV
Sbjct: 115367 GHVERARDEGLQQRTRDSV 115311
Score = 86.7 bits (213), Expect = 2e-15, Method: Composition-based stats.
Identities = 50/79 (63%), Positives = 56/79 (70%)
Frame = -3
Query: 1 DALLRHTKRSHQAAEDVVALRRGQRAKQDAVAGVKVVDQHPHLVVAYIEGDGLVVKGGAQ 60
DALLRHTKRSHQ DVV LRRGQRAKQD +AGVKVVDQHPH VVA +E D L +K A+
Sbjct: 120943 DALLRHTKRSHQPTVDVVQLRRGQRAKQDLIAGVKVVDQHPHRVVAQVERDSLSIKHRAK 120764
Query: 61 GHVERARDEGLQQRTRDSV 79
V D+G QQ+ V
Sbjct: 120763 Q*VRLGGDDGAQQQVTAEV 120707
>ref|XM_001681152.1| Leishmania major hypothetical protein, conserved (LmjF09.0320)
partial mRNA
Length = 2757
Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 101/182 (55%), Positives = 113/182 (62%), Gaps = 17/182 (9%)
Frame = -1
Query: 1 DALLRHTKRSHQAAEDVVALRRGQRAKQDAVAGVKVVDQHPHLVVAYIEGDGLVVKGGAQ 60
DALLRHTK HQAAEDVVALRR QRA+QD VAGV+VVDQHP L VA+IEGDGLVVKG AQ
Sbjct: 2586 DALLRHTKGCHQAAEDVVALRRCQRAEQDLVAGVEVVDQHPRLGVAHIEGDGLVVKGDAQ 2407
Query: 61 GHVERARDEGLQQRTRDSVGFNQLNTRFLWRQVCLALHNNSALHHDLLFGLQGTVTQRTT 120
G +ERA D+ LQQRT D V FNQ T LW + + + LH L F ++ R
Sbjct: 2406 GDIERAWDQRLQQRTCDGVRFNQHKTMLLWGRGRVVFCKSLLLHQGLRFRVRIPAA*RIA 2227
Query: 121 ATLAPSQCC------------AP----RVTRG-GRRTESFHRSRRPILQTGYSFPRPQAU 163
+T AP CC AP R G GRR F RSR PILQTG+S P QA
Sbjct: 2226 STGAPFDCCTLTAL*RLGRSRAPFGQGRAAPGAGRRGLDFRRSRGPILQTGHSRPCFQAR 2047
Query: 164 RV 165
RV
Sbjct: 2046 RV 2041
>ref|XM_001463448.1| Leishmania infantum JPCM5 hypothetical protein, conserved
(LinJ09.0280) partial mRNA
Length = 2760
Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats.
Identities = 94/175 (53%), Positives = 106/175 (60%), Gaps = 17/175 (9%)
Frame = -1
Query: 1 DALLRHTKRSHQAAEDVVALRRGQRAKQDAVAGVKVVDQHPHLVVAYIEGDGLVVKGGAQ 60
DALLR+TK HQAAEDVVALRRGQRA+QD VAGV+VVDQHPHL VA+IEGDGLVVKG AQ
Sbjct: 2589 DALLRYTKGCHQAAEDVVALRRGQRAEQDLVAGVEVVDQHPHLGVAHIEGDGLVVKGDAQ 2410
Query: 61 GHVERARDEGLQQRTRDSVGFNQLNTRFLWRQVCLALHNNSALHHDLLFGLQGTVTQRTT 120
G+VERA D+ LQQR D V FNQ T L + + + H LLF +Q R
Sbjct: 2409 GNVERAWDQRLQQRACDGVSFNQHKTMLL*SRGRVVFRKSLLPHQGLLFRVQIPAA*RIA 2230
Query: 121 ATLAPSQCCAP-----------------RVTRGGRRTESFHRSRRPILQTGYSFP 158
+T AP CC P R GRR F SR ILQTG+S P
Sbjct: 2229 STCAPFGCCTPTAL*RVGRSRAPFGRGRRAPGAGRRGLDFR*SRGHILQTGHSRP 2065
>emb|AM502227.1| Leishmania infantum chromosome 9
Length = 570592
Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats.
Identities = 94/175 (53%), Positives = 106/175 (60%), Gaps = 17/175 (9%)
Frame = -1
Query: 1 DALLRHTKRSHQAAEDVVALRRGQRAKQDAVAGVKVVDQHPHLVVAYIEGDGLVVKGGAQ 60
DALLR+TK HQAAEDVVALRRGQRA+QD VAGV+VVDQHPHL VA+IEGDGLVVKG AQ
Sbjct: 96025 DALLRYTKGCHQAAEDVVALRRGQRAEQDLVAGVEVVDQHPHLGVAHIEGDGLVVKGDAQ 95846
Query: 61 GHVERARDEGLQQRTRDSVGFNQLNTRFLWRQVCLALHNNSALHHDLLFGLQGTVTQRTT 120
G+VERA D+ LQQR D V FNQ T L + + + H LLF +Q R
Sbjct: 95845 GNVERAWDQRLQQRACDGVSFNQHKTMLL*SRGRVVFRKSLLPHQGLLFRVQIPAA*RIA 95666
Query: 121 ATLAPSQCCAP-----------------RVTRGGRRTESFHRSRRPILQTGYSFP 158
+T AP CC P R GRR F SR ILQTG+S P
Sbjct: 95665 STCAPFGCCTPTAL*RVGRSRAPFGRGRRAPGAGRRGLDFR*SRGHILQTGHSRP 95501
Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats.
Identities = 64/79 (81%), Positives = 69/79 (87%)
Frame = -1
Query: 1 DALLRHTKRSHQAAEDVVALRRGQRAKQDAVAGVKVVDQHPHLVVAYIEGDGLVVKGGAQ 60
DALLRHTK HQAAEDVVALRRGQRA+QD VAGV+VVDQHPHL VA+IEGDGLVVKG AQ
Sbjct: 101152 DALLRHTKGCHQAAEDVVALRRGQRAEQDLVAGVEVVDQHPHLGVAHIEGDGLVVKGDAQ 100973
Query: 61 GHVERARDEGLQQRTRDSV 79
G+VERA D+ LQQR D V
Sbjct: 100972 GNVERAWDQRLQQRACDGV 100916
Score = 73.2 bits (178), Expect = 2e-11, Method: Composition-based stats.
Identities = 39/56 (69%), Positives = 44/56 (78%)
Frame = -1
Query: 1 DALLRHTKRSHQAAEDVVALRRGQRAKQDAVAGVKVVDQHPHLVVAYIEGDGLVVK 56
DALLRHTK HQ DVV LRRGQRA+QD VAGV+VVDQHPH VVA +E D L ++
Sbjct: 106420 DALLRHTKGCHQPTVDVVQLRRGQRAEQDFVAGVEVVDQHPHRVVAQVERDSLPIE 106253
>ref|XM_001562598.1| Leishmania braziliensis MHOM/BR/75/M2904 hypothetical protein,
conserved (LbrM09_V2.0320) partial mRNA
Length = 2538
Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats.
Identities = 75/79 (94%), Positives = 77/79 (97%)
Frame = -1
Query: 1 DALLRHTKRSHQAAEDVVALRRGQRAKQDAVAGVKVVDQHPHLVVAYIEGDGLVVKGGAQ 60
DALLRHTKRSHQAAEDVVALRRGQRAKQD +AGVKVVDQHPH VVAYI+GDGLVVKGGAQ
Sbjct: 2406 DALLRHTKRSHQAAEDVVALRRGQRAKQDLIAGVKVVDQHPHRVVAYIKGDGLVVKGGAQ 2227
Query: 61 GHVERARDEGLQQRTRDSV 79
GHVERARDEGLQQRTRDSV
Sbjct: 2226 GHVERARDEGLQQRTRDSV 2170
>ref|XM_001463449.1| Leishmania infantum JPCM5 hypothetical protein, conserved
(LinJ09.0290) partial mRNA
Length = 2550
Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats.
Identities = 64/79 (81%), Positives = 69/79 (87%)
Frame = -1
Query: 1 DALLRHTKRSHQAAEDVVALRRGQRAKQDAVAGVKVVDQHPHLVVAYIEGDGLVVKGGAQ 60
DALLRHTK HQAAEDVVALRRGQRA+QD VAGV+VVDQHPHL VA+IEGDGLVVKG AQ
Sbjct: 2394 DALLRHTKGCHQAAEDVVALRRGQRAEQDLVAGVEVVDQHPHLGVAHIEGDGLVVKGDAQ 2215
Query: 61 GHVERARDEGLQQRTRDSV 79
G+VERA D+ LQQR D V
Sbjct: 2214 GNVERAWDQRLQQRACDGV 2158
>ref|XM_001681153.1| Leishmania major hypothetical protein, conserved (LmjF09.0330)
partial mRNA
Length = 2541
Score = 108 bits (269), Expect = 7e-22, Method: Composition-based stats.
Identities = 61/79 (77%), Positives = 67/79 (84%)
Frame = -1
Query: 1 DALLRHTKRSHQAAEDVVALRRGQRAKQDAVAGVKVVDQHPHLVVAYIEGDGLVVKGGAQ 60
DALLRHTK HQAAEDVVALRR QRA+Q+ AGV+VVDQHPHL VA+IEGDGLVVKG AQ
Sbjct: 2385 DALLRHTKGCHQAAEDVVALRRCQRAEQNLAAGVEVVDQHPHLGVAHIEGDGLVVKGDAQ 2206
Query: 61 GHVERARDEGLQQRTRDSV 79
G +ERA D+ LQQRT D V
Sbjct: 2205 GDIERAWDQRLQQRTCDGV 2149
>ref|XM_001562599.1| Leishmania braziliensis MHOM/BR/75/M2904 hypothetical protein,
conserved (LbrM09_V2.0330) partial mRNA
Length = 3093
Score = 82.4 bits (202), Expect = 4e-14, Method: Composition-based stats.
Identities = 50/79 (63%), Positives = 56/79 (70%)
Frame = -1
Query: 1 DALLRHTKRSHQAAEDVVALRRGQRAKQDAVAGVKVVDQHPHLVVAYIEGDGLVVKGGAQ 60
DALLRHTKRSHQ DVV LRRGQRAKQD +AGVKVVDQHPH VVA +E D L +K A+
Sbjct: 2916 DALLRHTKRSHQPTVDVVQLRRGQRAKQDLIAGVKVVDQHPHRVVAQVERDSLSIKHRAK 2737
Query: 61 GHVERARDEGLQQRTRDSV 79
V D+G QQ+ V
Sbjct: 2736 Q*VRLGGDDGAQQQVTAEV 2680
>ref|XM_001463450.1| Leishmania infantum JPCM5 hypothetical protein, conserved
(LinJ09.0300) partial mRNA
Length = 2982
Score = 71.2 bits (173), Expect = 9e-11, Method: Composition-based stats.
Identities = 39/56 (69%), Positives = 44/56 (78%)
Frame = -1
Query: 1 DALLRHTKRSHQAAEDVVALRRGQRAKQDAVAGVKVVDQHPHLVVAYIEGDGLVVK 56
DALLRHTK HQ DVV LRRGQRA+QD VAGV+VVDQHPH VVA +E D L ++
Sbjct: 2808 DALLRHTKGCHQPTVDVVQLRRGQRAEQDFVAGVEVVDQHPHRVVAQVERDSLPIE 2641
>ref|XM_001681154.1| Leishmania major hypothetical protein, conserved (LmjF09.0340)
partial mRNA
Length = 3195
Score = 66.6 bits (161), Expect = 2e-09, Method: Composition-based stats.
Identities = 42/79 (53%), Positives = 52/79 (65%)
Frame = -1
Query: 1 DALLRHTKRSHQAAEDVVALRRGQRAKQDAVAGVKVVDQHPHLVVAYIEGDGLVVKGGAQ 60
DALLRHTK HQ DVV LR QRA+QD VAGV+VVDQ+PH VVA ++ D L ++ A+
Sbjct: 2937 DALLRHTKGCHQPTVDVVQLRCCQRAEQDLVAGVEVVDQYPHRVVAQVQRDSLPIEHRAE 2758
Query: 61 GHVERARDEGLQQRTRDSV 79
V D G QQ+ + V
Sbjct: 2757 QQV*LG*DCGAQQQVAEVV 2701
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4
Length = 35498469
Score = 37.4 bits (85), Expect = 1.8, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Frame = -2
Query: 33 GVKVVDQHPHLVVAYIEGDGLVVKGGAQGHVERARD--EGLQQRTRDSVGFNQLNTRFLW 90
GV+ +D+ L+VAY G L + G Q H D +G + ++ S G NQL T W
Sbjct: 3640304 GVQAIDRLSSLLVAYSAGFVLCSRRGEQIHGTTDSDAFQGTKANSKISQGDNQLWTHVFW 3640125
Query: 91 RQVC 94
RQ C
Sbjct: 3640124 RQWC 3640113
>emb|AL606655.3|OSJN00103 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0040D15,
complete sequence
Length = 130618
Score = 37.4 bits (85), Expect = 1.8, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Frame = -2
Query: 33 GVKVVDQHPHLVVAYIEGDGLVVKGGAQGHVERARD--EGLQQRTRDSVGFNQLNTRFLW 90
GV+ +D+ L+VAY G L + G Q H D +G + ++ S G NQL T W
Sbjct: 106596 GVQAIDRLSSLLVAYSAGFVLCSRRGEQIHGTTDSDAFQGTKANSKISQGDNQLWTHVFW 106417
Query: 91 RQVC 94
RQ C
Sbjct: 106416 RQWC 106405
>gb|AC110690.6| Rattus norvegicus BAC CH230-290M8 (Children's Hospital Oakland Research
Institute Rat (BN/SsNHsd/MCW) BAC library) complete
sequence
Length = 170529
Score = 37.0 bits (84), Expect = 2.3, Method: Composition-based stats.
Identities = 28/82 (34%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Frame = +3
Query: 52 GLVVKGGAQGHVERARDEGLQQRTRDSVGFNQLNTRFLW--RQVCLALHNNSALHHDLLF 109
GLV +G +G E AR R R S+G L T +W R+ +L N + HH L
Sbjct: 165795 GLVWRGEMEGREELARGYDRGVRVRKSLGPMMLGTSVVWGRREALGSLWNPVSNHHTL-- 165968
Query: 110 GLQGTVTQRTTATLAPSQCCAP 131
R T ++A S CC P
Sbjct: 165969 --------RKTCSVALSDCCLP 166010
>gb|AC124450.3| Mus musculus BAC clone RP24-215C4 from chromosome 13, complete sequence
Length = 157531
Score = 36.6 bits (83), Expect = 2.7, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = -3
Query: 128 CCAPRVTRGGRRTESFHRSRRPILQTGYSFPRPQ 161
CC R+ GRR SF R P+ Y+FPR Q
Sbjct: 145046 CCHARLNPSGRRASSFARDEPPLFSFSYTFPRKQ 144945
>gb|AC123857.4| Mus musculus BAC clone RP23-344L21 from chromosome 13, complete sequence
Length = 192371
Score = 36.6 bits (83), Expect = 2.7, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = +3
Query: 128 CCAPRVTRGGRRTESFHRSRRPILQTGYSFPRPQ 161
CC R+ GRR SF R P+ Y+FPR Q
Sbjct: 161196 CCHARLNPSGRRASSFARDEPPLFSFSYTFPRKQ 161297
>emb|CU062644.16| M.truncatula DNA sequence from clone MTH2-155M7 on chromosome 3,
complete sequence
Length = 68238
Score = 36.6 bits (83), Expect = 2.8, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +3
Query: 100 NSALHHDLLFGLQGTVTQRTTATLAPSQCCAPRVTRGGRR 139
NS + H L+F L + T TL+P++CC GGRR
Sbjct: 3540 NSNMSHPLIFNLLFVLCTLDTTTLSPTRCCYCSFLHGGRR 3659
>gb|AC147563.4| Mus musculus BAC clone RP23-231H21 from chromosome 10, complete
sequence
Length = 236428
Score = 36.2 bits (82), Expect = 3.3, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 27/55 (49%)
Frame = -1
Query: 104 HHDLLFGLQGTVTQRTTATLAPSQCCAPRVTRGGRRTESFHRSRRPILQTGYSFP 158
HH ++ LQ T L + CCAPR++R SF S RP+ G+S P
Sbjct: 69703 HHFVVINLQPKYTPAMKTQLNMNTCCAPRLSRPNATLPSF-TSMRPLRTCGFSRP 69542
>gb|AC122810.4| Mus musculus BAC clone RP23-276H4 from chromosome 10, complete sequence
Length = 177681
Score = 36.2 bits (82), Expect = 3.3, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 27/55 (49%)
Frame = -3
Query: 104 HHDLLFGLQGTVTQRTTATLAPSQCCAPRVTRGGRRTESFHRSRRPILQTGYSFP 158
HH ++ LQ T L + CCAPR++R SF S RP+ G+S P
Sbjct: 55534 HHFVVINLQPKYTPAMKTQLNMNTCCAPRLSRPNATLPSF-TSMRPLRTCGFSRP 55373
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
Length = 7036071
Score = 35.8 bits (81), Expect = 5.3, Method: Composition-based stats.
Identities = 49/166 (29%), Positives = 63/166 (37%), Gaps = 23/166 (13%)
Frame = +3
Query: 8 KRSHQAAEDVVALRRGQRAKQDAVAGVKVVDQHPHLVV------------AYIE------ 49
+R H+A V R Q + + VK+V PHLV A+IE
Sbjct: 546192 RRRHRALRHVAEKREMQEMAEVEMNHVKIVGAFPHLVEHRQMRRDLGLQRAWIEAKRPLA 546371
Query: 50 -----GDGLVVKGGAQGHVERARDEGLQQRTRDSVGFNQLNTRFLWRQVCLALHNNSALH 104
G GL V G Q HV DEG Q D++G WR + + S LH
Sbjct: 546372 AGHEFGGGLRVAAGEQRHVVAEVDEGFGQVGNDALG----APVEPWRNGFVQWRDMSDLH 546539
Query: 105 HDLLFGLQGTVTQRTTATLAPSQCCAPRVTRGGRRTESFHRSRRPI 150
G T+ + + P+ RV R RRT RS RPI
Sbjct: 546540 GPAFPQCAGHGTKCFSRRIVPAHW---RVRRNDRRTFDV-RSSRPI 546665
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.323 0.135 4.00e-310
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 507478327
Number of extensions: 7028711
Number of successful extensions: 45485
Number of sequences better than 10: 1
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 45469
Number of HSP's successfully gapped: 1
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 16 (7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 78 (34.7 bits)
Query= gi|154333023|ref|NC_009301.1|:subseq(446277,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 9:[revcomp]
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
ref|XM_001562597.1| Leishmania braziliensis MHOM/BR/75/M2904 hyp... 249 3e-64
emb|AM494946.1| Leishmania braziliensis chromosome 9 249 3e-64
emb|AM502227.1| Leishmania infantum chromosome 9 120 1e-25
ref|XM_001681152.1| Leishmania major hypothetical protein, conse... 115 7e-24
ref|XM_001463448.1| Leishmania infantum JPCM5 hypothetical prote... 110 1e-22
ref|XM_001562598.1| Leishmania braziliensis MHOM/BR/75/M2904 hyp... 105 5e-21
ref|XM_001463449.1| Leishmania infantum JPCM5 hypothetical prote... 80 2e-13
ref|XM_001681153.1| Leishmania major hypothetical protein, conse... 79 5e-13
ref|XM_001562599.1| Leishmania braziliensis MHOM/BR/75/M2904 hyp... 49 4e-04
ref|XM_001681154.1| Leishmania major hypothetical protein, conse... 46 0.003
ref|XM_001463450.1| Leishmania infantum JPCM5 hypothetical prote... 46 0.003
ref|XM_811955.1| Trypanosoma cruzi strain CL Brener hypothetical... 37 2.2
gb|AC160946.6| Mus musculus 10 BAC RP23-175G6 (Roswell Park Canc... 35 9.6
gb|AC153965.4| Mus musculus 10 BAC RP24-377E21 (Roswell Park Can... 35 9.6
>ref|XM_001562597.1| Leishmania braziliensis MHOM/BR/75/M2904 hypothetical protein,
conserved (LbrM09_V2.0310) partial mRNA
Length = 2352
Score = 249 bits (635), Expect = 3e-64, Method: Composition-based stats.
Identities = 149/166 (89%), Positives = 149/166 (89%)
Frame = -2
Query: 1 MPCCGTPNAVTRRRKMLWRSGAASGRNRMLXLEXKXXXXXXXXXXXXXXVMDWXSKAARR 60
MPCCGTPNAVTRRRKMLWRSGAASGRNRML LE K VMDW SKAARR
Sbjct: 2180 MPCCGTPNAVTRRRKMLWRSGAASGRNRML*LE*K**TSTRTSS*RISRVMDW*SKAARR 2001
Query: 61 ATSSERVMKGCSSARVTASASISSTRGFSGDKSVLRSTIIRLCTTTFCSACKAPSLKGLR 120
ATSSERVMKGCSSARVTASASISSTRGFSGDKSVLRSTIIRLCTTTFCSACKAPSLKGLR
Sbjct: 2000 ATSSERVMKGCSSARVTASASISSTRGFSGDKSVLRSTIIRLCTTTFCSACKAPSLKGLR 1821
Query: 121 PRWHPLSVVHPGLHVVDAGQKASIGRADPSCRPDTASLAPRLDEFI 166
PRWHPLSVVHPGLHVVDAGQKASIGRADPSCRPDTASLAPRLDEFI
Sbjct: 1820 PRWHPLSVVHPGLHVVDAGQKASIGRADPSCRPDTASLAPRLDEFI 1683
>emb|AM494946.1| Leishmania braziliensis chromosome 9
Length = 556710
Score = 249 bits (635), Expect = 3e-64, Method: Composition-based stats.
Identities = 149/166 (89%), Positives = 149/166 (89%)
Frame = -3
Query: 1 MPCCGTPNAVTRRRKMLWRSGAASGRNRMLXLEXKXXXXXXXXXXXXXXVMDWXSKAARR 60
MPCCGTPNAVTRRRKMLWRSGAASGRNRML LE K VMDW SKAARR
Sbjct: 110431 MPCCGTPNAVTRRRKMLWRSGAASGRNRML*LE*K**TSTRTSS*RISRVMDW*SKAARR 110252
Query: 61 ATSSERVMKGCSSARVTASASISSTRGFSGDKSVLRSTIIRLCTTTFCSACKAPSLKGLR 120
ATSSERVMKGCSSARVTASASISSTRGFSGDKSVLRSTIIRLCTTTFCSACKAPSLKGLR
Sbjct: 110251 ATSSERVMKGCSSARVTASASISSTRGFSGDKSVLRSTIIRLCTTTFCSACKAPSLKGLR 110072
Query: 121 PRWHPLSVVHPGLHVVDAGQKASIGRADPSCRPDTASLAPRLDEFI 166
PRWHPLSVVHPGLHVVDAGQKASIGRADPSCRPDTASLAPRLDEFI
Sbjct: 110071 PRWHPLSVVHPGLHVVDAGQKASIGRADPSCRPDTASLAPRLDEFI 109934
Score = 105 bits (262), Expect = 5e-21, Method: Composition-based stats.
Identities = 61/79 (77%), Positives = 62/79 (78%)
Frame = -3
Query: 1 MPCCGTPNAVTRRRKMLWRSGAASGRNRMLXLEXKXXXXXXXXXXXXXXVMDWXSKAARR 60
MPCCGTPNAVTRRRKMLWRSGAASGRNR+L LE K VMDW SKAARR
Sbjct: 115546 MPCCGTPNAVTRRRKMLWRSGAASGRNRIL*LE*K**TSTRTES*RISRVMDW*SKAARR 115367
Query: 61 ATSSERVMKGCSSARVTAS 79
ATSSERVMKGCSSARVTAS
Sbjct: 115366 ATSSERVMKGCSSARVTAS 115310
Score = 49.3 bits (116), Expect = 4e-04, Method: Composition-based stats.
Identities = 28/36 (77%), Positives = 29/36 (80%)
Frame = -1
Query: 1 MPCCGTPNAVTRRRKMLWRSGAASGRNRMLXLEXKX 36
MPCCGTPNAVT RR ML SGAASGRNR+L LE K
Sbjct: 120942 MPCCGTPNAVTSRR*MLCSSGAASGRNRIL*LE*K* 120835
>emb|AM502227.1| Leishmania infantum chromosome 9
Length = 570592
Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats.
Identities = 91/183 (49%), Positives = 101/183 (55%), Gaps = 18/183 (9%)
Frame = -2
Query: 1 MPCCGTPNAVTRRRKMLWRSGAASGRNRMLXLEXKXXXXXXXXXXXXXXVMDWXSKAARR 60
MPCCGTP AVTRRRKMLWRSGAASGRNR+L LE K VMDW SKA RR
Sbjct: 96024 MPCCGTPKAVTRRRKMLWRSGAASGRNRIL*LE*K**TSTRTSA*RTSRVMDW*SKATRR 95845
Query: 61 ATSSERVMKGCSSARVTASASISSTRGFSGDKSVLRSTIIRLCTTTFCSACKAPSLKGLR 120
ATSS R + GCSSARVTASASIS+ R S ++ L T CS K+P LKGLR
Sbjct: 95844 ATSSARGISGCSSARVTASASISTRRCCSRVEAALCFARACFRTKACCSVSKSPRLKGLR 95665
Query: 121 PRWHPLSVVHP-----------------GLHVVDAGQKASIGRADPSCRPDTASL-APRL 162
R + P L +DA S RAD SCR TA+L A +L
Sbjct: 95664 VRALLSAAARPRRCDALVALELPLVEAAELQALDAEDSISGDRADTSCRLGTAALPASKL 95485
Query: 163 DEF 165
EF
Sbjct: 95484 GEF 95476
Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 55/79 (69%), Positives = 57/79 (72%)
Frame = -2
Query: 1 MPCCGTPNAVTRRRKMLWRSGAASGRNRMLXLEXKXXXXXXXXXXXXXXVMDWXSKAARR 60
MPCCGTP AVTRRRKMLWRSGAASGRNR+L LE K VMDW SKA RR
Sbjct: 101151 MPCCGTPKAVTRRRKMLWRSGAASGRNRIL*LE*K**TSTRTSA*RTSRVMDW*SKATRR 100972
Query: 61 ATSSERVMKGCSSARVTAS 79
ATSS R + GCSSARVTAS
Sbjct: 100971 ATSSARGISGCSSARVTAS 100915
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 26/36 (72%), Positives = 27/36 (75%)
Frame = -2
Query: 1 MPCCGTPNAVTRRRKMLWRSGAASGRNRMLXLEXKX 36
MPCCGTP AV RR ML SGAASGRNR+L LE K
Sbjct: 106419 MPCCGTPKAVISRR*MLCSSGAASGRNRIL*LE*K* 106312
>ref|XM_001681152.1| Leishmania major hypothetical protein, conserved (LmjF09.0320)
partial mRNA
Length = 2757
Score = 115 bits (287), Expect = 7e-24, Method: Composition-based stats.
Identities = 91/182 (50%), Positives = 104/182 (57%), Gaps = 17/182 (9%)
Frame = -2
Query: 1 MPCCGTPNAVTRRRKMLWRSGAASGRNRMLXLEXKXXXXXXXXXXXXXXVMDWXSKAARR 60
MPCCGTP AVTRRRKMLWRSGAASGRNR+L LE K VMDW SKA RR
Sbjct: 2585 MPCCGTPKAVTRRRKMLWRSGAASGRNRIL*LE*K**TSTRASA*RTSRVMDW*SKATRR 2406
Query: 61 ATSSERVMKGCSSARVTASASISSTRGFSGDKSVLRSTIIRLCTTTFCSACKAPSLKGLR 120
ATSS R + GCSSARVTASASIS+ SG ++ L CT S C++P LKGL+
Sbjct: 2405 ATSSARGISGCSSARVTASASISTRLCCSGVEAALCFARACCCTKACGSVCESPRLKGLQ 2226
Query: 121 P-----------RWHPLSVVH------PGLHVVDAGQKASIGRADPSCRPDTASLAPRLD 163
R L+ + L +DA S RADPSCR DTA+ A +L
Sbjct: 2225 ALALLSTAARSRRCDALAALELPLVKVAQLQALDAEDSISGDRADPSCRLDTAAPASKLG 2046
Query: 164 EF 165
EF
Sbjct: 2045 EF 2040
>ref|XM_001463448.1| Leishmania infantum JPCM5 hypothetical protein, conserved
(LinJ09.0280) partial mRNA
Length = 2760
Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats.
Identities = 91/183 (49%), Positives = 101/183 (55%), Gaps = 18/183 (9%)
Frame = -2
Query: 1 MPCCGTPNAVTRRRKMLWRSGAASGRNRMLXLEXKXXXXXXXXXXXXXXVMDWXSKAARR 60
MPCCGTP AVTRRRKMLWRSGAASGRNR+L LE K VMDW SKA RR
Sbjct: 2588 MPCCGTPKAVTRRRKMLWRSGAASGRNRIL*LE*K**TSTRTSA*RTSRVMDW*SKATRR 2409
Query: 61 ATSSERVMKGCSSARVTASASISSTRGFSGDKSVLRSTIIRLCTTTFCSACKAPSLKGLR 120
ATSS R + GCSSARVTASASIS+ R S ++ L T CS K+P LKGLR
Sbjct: 2408 ATSSARGISGCSSARVTASASISTRRCCSRVEAALCFARACFRTKACCSVSKSPRLKGLR 2229
Query: 121 PRWHPLSVVHP-----------------GLHVVDAGQKASIGRADPSCRPDTASL-APRL 162
R + P L +DA S RAD SCR TA+L A +L
Sbjct: 2228 VRALLSAAARPRRCDALVALELPLVEAAELQALDAEDSISGDRADTSCRLGTAALPASKL 2049
Query: 163 DEF 165
EF
Sbjct: 2048 GEF 2040
>ref|XM_001562598.1| Leishmania braziliensis MHOM/BR/75/M2904 hypothetical protein,
conserved (LbrM09_V2.0320) partial mRNA
Length = 2538
Score = 105 bits (262), Expect = 5e-21, Method: Composition-based stats.
Identities = 61/79 (77%), Positives = 62/79 (78%)
Frame = -2
Query: 1 MPCCGTPNAVTRRRKMLWRSGAASGRNRMLXLEXKXXXXXXXXXXXXXXVMDWXSKAARR 60
MPCCGTPNAVTRRRKMLWRSGAASGRNR+L LE K VMDW SKAARR
Sbjct: 2405 MPCCGTPNAVTRRRKMLWRSGAASGRNRIL*LE*K**TSTRTES*RISRVMDW*SKAARR 2226
Query: 61 ATSSERVMKGCSSARVTAS 79
ATSSERVMKGCSSARVTAS
Sbjct: 2225 ATSSERVMKGCSSARVTAS 2169
>ref|XM_001463449.1| Leishmania infantum JPCM5 hypothetical protein, conserved
(LinJ09.0290) partial mRNA
Length = 2550
Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 55/79 (69%), Positives = 57/79 (72%)
Frame = -2
Query: 1 MPCCGTPNAVTRRRKMLWRSGAASGRNRMLXLEXKXXXXXXXXXXXXXXVMDWXSKAARR 60
MPCCGTP AVTRRRKMLWRSGAASGRNR+L LE K VMDW SKA RR
Sbjct: 2393 MPCCGTPKAVTRRRKMLWRSGAASGRNRIL*LE*K**TSTRTSA*RTSRVMDW*SKATRR 2214
Query: 61 ATSSERVMKGCSSARVTAS 79
ATSS R + GCSSARVTAS
Sbjct: 2213 ATSSARGISGCSSARVTAS 2157
>ref|XM_001681153.1| Leishmania major hypothetical protein, conserved (LmjF09.0330)
partial mRNA
Length = 2541
Score = 79.0 bits (193), Expect = 5e-13, Method: Composition-based stats.
Identities = 55/79 (69%), Positives = 57/79 (72%)
Frame = -2
Query: 1 MPCCGTPNAVTRRRKMLWRSGAASGRNRMLXLEXKXXXXXXXXXXXXXXVMDWXSKAARR 60
MPCCGTP AVTRRRKMLWRSGAASGRNR+L LE K VMDW SKA RR
Sbjct: 2384 MPCCGTPKAVTRRRKMLWRSGAASGRNRILQLE*K**TSTRTSA*RTSRVMDW*SKATRR 2205
Query: 61 ATSSERVMKGCSSARVTAS 79
ATSS R + GCSSARVTAS
Sbjct: 2204 ATSSARGISGCSSARVTAS 2148
>ref|XM_001562599.1| Leishmania braziliensis MHOM/BR/75/M2904 hypothetical protein,
conserved (LbrM09_V2.0330) partial mRNA
Length = 3093
Score = 49.3 bits (116), Expect = 4e-04, Method: Composition-based stats.
Identities = 28/36 (77%), Positives = 29/36 (80%)
Frame = -2
Query: 1 MPCCGTPNAVTRRRKMLWRSGAASGRNRMLXLEXKX 36
MPCCGTPNAVT RR ML SGAASGRNR+L LE K
Sbjct: 2915 MPCCGTPNAVTSRR*MLCSSGAASGRNRIL*LE*K* 2808
>ref|XM_001681154.1| Leishmania major hypothetical protein, conserved (LmjF09.0340)
partial mRNA
Length = 3195
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 26/36 (72%), Positives = 27/36 (75%)
Frame = -2
Query: 1 MPCCGTPNAVTRRRKMLWRSGAASGRNRMLXLEXKX 36
MPCCGTP AV RR ML SGAASGRNR+L LE K
Sbjct: 2936 MPCCGTPKAVISRR*MLCSSGAASGRNRIL*LE*K* 2829
>ref|XM_001463450.1| Leishmania infantum JPCM5 hypothetical protein, conserved
(LinJ09.0300) partial mRNA
Length = 2982
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 26/36 (72%), Positives = 27/36 (75%)
Frame = -2
Query: 1 MPCCGTPNAVTRRRKMLWRSGAASGRNRMLXLEXKX 36
MPCCGTP AV RR ML SGAASGRNR+L LE K
Sbjct: 2807 MPCCGTPKAVISRR*MLCSSGAASGRNRIL*LE*K* 2700
>ref|XM_811955.1| Trypanosoma cruzi strain CL Brener hypothetical protein partial mRNA
Length = 2542
Score = 37.0 bits (84), Expect = 2.2, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 32/74 (43%)
Frame = -3
Query: 4 CGTPNAVTRRRKMLWRSGAASGRNRMLXLEXKXXXXXXXXXXXXXXVMDWXSKAARRATS 63
CG P VTRR KML RSG A G + L E K D S AR S
Sbjct: 2453 CGIPKTVTRRLKMLLRSGVAKGFSNNLNAEKK**TTVRTES*LKSKSKDCCSNTARSCVS 2274
Query: 64 SERVMKGCSSARVT 77
++ M GC S VT
Sbjct: 2273 TKVGMVGCRSTSVT 2232
>gb|AC160946.6| Mus musculus 10 BAC RP23-175G6 (Roswell Park Cancer Institute (C57BL/6J
Female) Mouse BAC Library) complete sequence
Length = 192628
Score = 34.7 bits (78), Expect = 9.6, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Frame = -3
Query: 67 VMKGCSSARVTASASISSTRGFSGDKSVLRSTIIRLCTTTFCSACKAPSLKGLRP--RWH 124
+M+ S +V S+ S RG +G S ST +R C T F S C + L+P +W
Sbjct: 185558 IMEHVSLLQVITSSGYMSRRGIAGSSSTTMSTFLRKCQTDFQSGCTS-----LQPHQQWR 185394
Query: 125 --PLSVVHPGLHVV 136
PLS HP H++
Sbjct: 185393 SVPLS-PHPCQHLL 185355
>gb|AC153965.4| Mus musculus 10 BAC RP24-377E21 (Roswell Park Cancer Institute
(C57BL/6J Male) Mouse BAC Library) complete sequence
Length = 166350
Score = 34.7 bits (78), Expect = 9.6, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Frame = -2
Query: 67 VMKGCSSARVTASASISSTRGFSGDKSVLRSTIIRLCTTTFCSACKAPSLKGLRP--RWH 124
+M+ S +V S+ S RG +G S ST +R C T F S C + L+P +W
Sbjct: 43325 IMEHVSLLQVITSSGYMSRRGIAGSSSTTMSTFLRKCQTDFQSGCTS-----LQPHQQWR 43161
Query: 125 --PLSVVHPGLHVV 136
PLS HP H++
Sbjct: 43160 SVPLS-PHPCQHLL 43122
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.335 0.139 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 621042732
Number of extensions: 9457556
Number of successful extensions: 148384
Number of sequences better than 10: 8
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 148196
Number of HSP's successfully gapped: 8
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 15 (7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (19.6 bits)
S2: 78 (34.7 bits)
Query= gi|154333023|ref|NC_009301.1|:subseq(59248,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 9
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
ref|XM_001562581.1| Leishmania braziliensis MHOM/BR/75/M2904 kin... 236 2e-60
emb|AM494946.1| Leishmania braziliensis chromosome 9 235 3e-60
ref|XM_001681124.1| Leishmania major kinesin, putative (LmjF09.0... 99 4e-19
ref|XM_001463435.1| Leishmania infantum JPCM5 kinesin, putative ... 88 8e-16
emb|AM502227.1| Leishmania infantum chromosome 9 88 8e-16
>ref|XM_001562581.1| Leishmania braziliensis MHOM/BR/75/M2904 kinesin, putative
(LbrM09_V2.0150) partial mRNA
Length = 3264
Score = 236 bits (602), Expect = 2e-60, Method: Composition-based stats.
Identities = 163/166 (98%), Positives = 163/166 (98%)
Frame = +3
Query: 1 AAHHQGSQEPPHDIASAALSYRWSPPQHQCEVEELTRRRRDPVNHQLRAARARANGKGVG 60
AAHHQGSQEPPHDIASAALSYRWSPPQHQCEVEELTRRRRDPVNHQLRAARARANGKGVG
Sbjct: 2598 AAHHQGSQEPPHDIASAALSYRWSPPQHQCEVEELTRRRRDPVNHQLRAARARANGKGVG 2777
Query: 61 RAAGVPPHPPNRSNNUCLQVEQCQGGFHTAALASSRCTAV*UAGPVRAHSPSQGKARCGG 120
RAAGVPPHPPNRSNN CLQVEQCQGGFHTAALASSRCTAV* AGPVRAHSPSQGKARCGG
Sbjct: 2778 RAAGVPPHPPNRSNN*CLQVEQCQGGFHTAALASSRCTAV**AGPVRAHSPSQGKARCGG 2957
Query: 121 NASTAAGVPPHVRUCRTATGRIR*PHREPQRSTQVPHTAGSPTAAC 166
NASTAAGVPPHVR CRTATGRIR*PHREPQRSTQVPHTAGSPTAAC
Sbjct: 2958 NASTAAGVPPHVR*CRTATGRIR*PHREPQRSTQVPHTAGSPTAAC 3095
>emb|AM494946.1| Leishmania braziliensis chromosome 9
Length = 556710
Score = 235 bits (600), Expect = 3e-60, Method: Composition-based stats.
Identities = 163/166 (98%), Positives = 163/166 (98%)
Frame = +2
Query: 1 AAHHQGSQEPPHDIASAALSYRWSPPQHQCEVEELTRRRRDPVNHQLRAARARANGKGVG 60
AAHHQGSQEPPHDIASAALSYRWSPPQHQCEVEELTRRRRDPVNHQLRAARARANGKGVG
Sbjct: 59249 AAHHQGSQEPPHDIASAALSYRWSPPQHQCEVEELTRRRRDPVNHQLRAARARANGKGVG 59428
Query: 61 RAAGVPPHPPNRSNNUCLQVEQCQGGFHTAALASSRCTAV*UAGPVRAHSPSQGKARCGG 120
RAAGVPPHPPNRSNN CLQVEQCQGGFHTAALASSRCTAV* AGPVRAHSPSQGKARCGG
Sbjct: 59429 RAAGVPPHPPNRSNN*CLQVEQCQGGFHTAALASSRCTAV**AGPVRAHSPSQGKARCGG 59608
Query: 121 NASTAAGVPPHVRUCRTATGRIR*PHREPQRSTQVPHTAGSPTAAC 166
NASTAAGVPPHVR CRTATGRIR*PHREPQRSTQVPHTAGSPTAAC
Sbjct: 59609 NASTAAGVPPHVR*CRTATGRIR*PHREPQRSTQVPHTAGSPTAAC 59746
>ref|XM_001681124.1| Leishmania major kinesin, putative (LmjF09.0120) mRNA, complete cds
Length = 3198
Score = 99.4 bits (246), Expect = 4e-19, Method: Composition-based stats.
Identities = 86/165 (52%), Positives = 101/165 (61%)
Frame = +3
Query: 1 AAHHQGSQEPPHDIASAALSYRWSPPQHQCEVEELTRRRRDPVNHQLRAARARANGKGVG 60
AAHHQGSQE P I A S W+ H+ ELTRR D +HQLRAAR RAN +GVG
Sbjct: 2517 AAHHQGSQELPRVIVLAGFSSTWASQ*HRRCPAELTRRDAD--DHQLRAARLRANTEGVG 2690
Query: 61 RAAGVPPHPPNRSNNUCLQVEQCQGGFHTAALASSRCTAV*UAGPVRAHSPSQGKARCGG 120
RAA V P P +R++ C+QV G A L S CT+V AGP RAHS SQG+ + G
Sbjct: 2691 RAASVSPCPADRASR*CIQVAPR*GWLCAATLTGSSCTSVYRAGPARAHSSSQGEKQREG 2870
Query: 121 NASTAAGVPPHVRUCRTATGRIR*PHREPQRSTQVPHTAGSPTAA 165
STAA VPPHV R+ATG R P+R P++ Q PH A TAA
Sbjct: 2871 ATSTAASVPPHVCRPRSATG*ARQPYRGPEQGAQAPHAALLSTAA 3005
>ref|XM_001463435.1| Leishmania infantum JPCM5 kinesin, putative (LinJ09.0150) mRNA,
complete cds
Length = 3255
Score = 88.2 bits (217), Expect = 8e-16, Method: Composition-based stats.
Identities = 83/165 (50%), Positives = 98/165 (59%)
Frame = +3
Query: 1 AAHHQGSQEPPHDIASAALSYRWSPPQHQCEVEELTRRRRDPVNHQLRAARARANGKGVG 60
AAH QGSQE PH I +S W+ H+ EL RRRRD +HQ+RAAR AN +G G
Sbjct: 2511 AAHRQGSQELPHVIVLVGISCAWASQ*HRWCPAELMRRRRDADDHQVRAARLGANTEGAG 2690
Query: 61 RAAGVPPHPPNRSNNUCLQVEQCQGGFHTAALASSRCTAV*UAGPVRAHSPSQGKARCGG 120
+A GV P P +R++ C+QV GG A L SRC AV AGP RAH SQG + GG
Sbjct: 2691 QATGVSPRPADRASR*CIQVAPR*GGLCAATLTGSRCAAVHRAGPARAHGSSQGAKQHGG 2870
Query: 121 NASTAAGVPPHVRUCRTATGRIR*PHREPQRSTQVPHTAGSPTAA 165
ASTAA PPH R A G R P+R P++ Q H A SPTAA
Sbjct: 2871 AASTAASAPPHARRPCAAAG*ARQPYRGPEQGAQALHAALSPTAA 3005
>emb|AM502227.1| Leishmania infantum chromosome 9
Length = 570592
Score = 88.2 bits (217), Expect = 8e-16, Method: Composition-based stats.
Identities = 83/165 (50%), Positives = 98/165 (59%)
Frame = +2
Query: 1 AAHHQGSQEPPHDIASAALSYRWSPPQHQCEVEELTRRRRDPVNHQLRAARARANGKGVG 60
AAH QGSQE PH I +S W+ H+ EL RRRRD +HQ+RAAR AN +G G
Sbjct: 61598 AAHRQGSQELPHVIVLVGISCAWASQ*HRWCPAELMRRRRDADDHQVRAARLGANTEGAG 61777
Query: 61 RAAGVPPHPPNRSNNUCLQVEQCQGGFHTAALASSRCTAV*UAGPVRAHSPSQGKARCGG 120
+A GV P P +R++ C+QV GG A L SRC AV AGP RAH SQG + GG
Sbjct: 61778 QATGVSPRPADRASR*CIQVAPR*GGLCAATLTGSRCAAVHRAGPARAHGSSQGAKQHGG 61957
Query: 121 NASTAAGVPPHVRUCRTATGRIR*PHREPQRSTQVPHTAGSPTAA 165
ASTAA PPH R A G R P+R P++ Q H A SPTAA
Sbjct: 61958 AASTAASAPPHARRPCAAAG*ARQPYRGPEQGAQALHAALSPTAA 62092
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.323 0.132 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 714629186
Number of extensions: 14343720
Number of successful extensions: 136149
Number of sequences better than 10: 75
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 135530
Number of HSP's successfully gapped: 96
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 16 (7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.0 bits)
S2: 78 (34.7 bits)
Query= gi|154333023|ref|NC_009301.1|:subseq(59248,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 9
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
ref|XM_001562581.1| Leishmania braziliensis MHOM/BR/75/M2904 kin... 263 1e-68
emb|AM494946.1| Leishmania braziliensis chromosome 9 263 1e-68
ref|XM_001681124.1| Leishmania major kinesin, putative (LmjF09.0... 179 4e-43
ref|XM_001463435.1| Leishmania infantum JPCM5 kinesin, putative ... 176 3e-42
emb|AM502227.1| Leishmania infantum chromosome 9 176 3e-42
ref|XM_816245.1| Trypanosoma cruzi strain CL Brener kinesin part... 61 2e-07
ref|XM_811939.1| Trypanosoma cruzi strain CL Brener kinesin part... 60 3e-07
gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome 36 4.2
ref|NM_001070977.1| Oryza sativa (japonica cultivar-group) Os10g... 35 7.8
gb|AC092548.10| Oryza sativa chromosome 10 BAC OSJNBa0073L01 gen... 35 7.8
dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 35 7.8
gb|AF070485.1| Canis familiaris dystrophin mRNA, complete cds 35 9.6
>ref|XM_001562581.1| Leishmania braziliensis MHOM/BR/75/M2904 kinesin, putative
(LbrM09_V2.0150) partial mRNA
Length = 3264
Score = 263 bits (673), Expect = 1e-68, Method: Composition-based stats.
Identities = 166/166 (100%), Positives = 166/166 (100%)
Frame = +1
Query: 1 PRIIKARKNPHMTSPPLHFHIGGPHRSINVKLKSSRDGDATQSTINFELQELERMEKELA 60
PRIIKARKNPHMTSPPLHFHIGGPHRSINVKLKSSRDGDATQSTINFELQELERMEKELA
Sbjct: 2599 PRIIKARKNPHMTSPPLHFHIGGPHRSINVKLKSSRDGDATQSTINFELQELERMEKELA 2778
Query: 61 ELLEYRRILLTAQTTDASKWNSAKEGFIRRLSQVHAALQSSEPGQSEHTALLKEKHDVEE 120
ELLEYRRILLTAQTTDASKWNSAKEGFIRRLSQVHAALQSSEPGQSEHTALLKEKHDVEE
Sbjct: 2779 ELLEYRRILLTAQTTDASKWNSAKEGFIRRLSQVHAALQSSEPGQSEHTALLKEKHDVEE 2958
Query: 121 MLRQLQAFHHMFADAEQQLAEFDNRIENLNEARKFHTQRVRRLQRA 166
MLRQLQAFHHMFADAEQQLAEFDNRIENLNEARKFHTQRVRRLQRA
Sbjct: 2959 MLRQLQAFHHMFADAEQQLAEFDNRIENLNEARKFHTQRVRRLQRA 3096
>emb|AM494946.1| Leishmania braziliensis chromosome 9
Length = 556710
Score = 263 bits (673), Expect = 1e-68, Method: Composition-based stats.
Identities = 166/166 (100%), Positives = 166/166 (100%)
Frame = +3
Query: 1 PRIIKARKNPHMTSPPLHFHIGGPHRSINVKLKSSRDGDATQSTINFELQELERMEKELA 60
PRIIKARKNPHMTSPPLHFHIGGPHRSINVKLKSSRDGDATQSTINFELQELERMEKELA
Sbjct: 59250 PRIIKARKNPHMTSPPLHFHIGGPHRSINVKLKSSRDGDATQSTINFELQELERMEKELA 59429
Query: 61 ELLEYRRILLTAQTTDASKWNSAKEGFIRRLSQVHAALQSSEPGQSEHTALLKEKHDVEE 120
ELLEYRRILLTAQTTDASKWNSAKEGFIRRLSQVHAALQSSEPGQSEHTALLKEKHDVEE
Sbjct: 59430 ELLEYRRILLTAQTTDASKWNSAKEGFIRRLSQVHAALQSSEPGQSEHTALLKEKHDVEE 59609
Query: 121 MLRQLQAFHHMFADAEQQLAEFDNRIENLNEARKFHTQRVRRLQRA 166
MLRQLQAFHHMFADAEQQLAEFDNRIENLNEARKFHTQRVRRLQRA
Sbjct: 59610 MLRQLQAFHHMFADAEQQLAEFDNRIENLNEARKFHTQRVRRLQRA 59747
>ref|XM_001681124.1| Leishmania major kinesin, putative (LmjF09.0120) mRNA, complete cds
Length = 3198
Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats.
Identities = 112/166 (67%), Positives = 128/166 (77%)
Frame = +1
Query: 1 PRIIKARKNPHMTSPPLHFHIGGPHRSINVKLKSSRDGDATQSTINFELQELERMEKELA 60
P IIK KN H +S FH G H SI+ L+SSRD ATQ+TIN ELQ+LER++KEL
Sbjct: 2518 PHIIKVHKNSHASSSWPGFHPHGLHSSIDGALQSSRD--ATQTTINCELQDLERIQKELV 2691
Query: 61 ELLEYRRILLTAQTTDASKWNSAKEGFIRRLSQVHAALQSSEPGQSEHTALLKEKHDVEE 120
ELL YRR LLTA DASKW+ AK+GF RRLSQV AALQS+EPGQ EHTALLKEK++V+E
Sbjct: 2692 ELLVYRRALLTAPAADASKWHRAKDGFARRLSQVQAALQSTEPGQREHTALLKEKNNVKE 2871
Query: 121 MLRQLQAFHHMFADAEQQLAEFDNRIENLNEARKFHTQRVRRLQRA 166
LRQLQAF HMFAD QQLAE DNRIE+LN A + HTQR +LQRA
Sbjct: 2872 QLRQLQAFRHMFADPAQQLAELDNRIEDLNRAHRLHTQRFCQLQRA 3009
>ref|XM_001463435.1| Leishmania infantum JPCM5 kinesin, putative (LinJ09.0150) mRNA,
complete cds
Length = 3255
Score = 176 bits (445), Expect = 3e-42, Method: Composition-based stats.
Identities = 109/166 (65%), Positives = 128/166 (77%)
Frame = +1
Query: 1 PRIIKARKNPHMTSPPLHFHIGGPHRSINVKLKSSRDGDATQSTINFELQELERMEKELA 60
P I+KARKN HM+S FH G H SI+ L+SS GDATQ+TI ELQ LE+++KELA
Sbjct: 2512 PHIVKARKNFHMSSSWSGFHAHGLHSSIDGALQSSCAGDATQTTIKCELQGLEQIQKELA 2691
Query: 61 ELLEYRRILLTAQTTDASKWNSAKEGFIRRLSQVHAALQSSEPGQSEHTALLKEKHDVEE 120
+LL YRR LLTAQ DASKW+ AKEGF RRLSQV AALQS+EPGQ E TALLKE+ +EE
Sbjct: 2692 KLLVYRRALLTAQAVDASKWHRAKEGFARRLSQVRAALQSTEPGQRERTALLKEQSSMEE 2871
Query: 121 MLRQLQAFHHMFADAEQQLAEFDNRIENLNEARKFHTQRVRRLQRA 166
LRQLQA HHM AD QQLAE D+RIE+LN A + +TQR R+LQR+
Sbjct: 2872 QLRQLQALHHMLADPAQQLAELDSRIEDLNRAHRLYTQRFRQLQRS 3009
>emb|AM502227.1| Leishmania infantum chromosome 9
Length = 570592
Score = 176 bits (445), Expect = 3e-42, Method: Composition-based stats.
Identities = 109/166 (65%), Positives = 128/166 (77%)
Frame = +3
Query: 1 PRIIKARKNPHMTSPPLHFHIGGPHRSINVKLKSSRDGDATQSTINFELQELERMEKELA 60
P I+KARKN HM+S FH G H SI+ L+SS GDATQ+TI ELQ LE+++KELA
Sbjct: 61599 PHIVKARKNFHMSSSWSGFHAHGLHSSIDGALQSSCAGDATQTTIKCELQGLEQIQKELA 61778
Query: 61 ELLEYRRILLTAQTTDASKWNSAKEGFIRRLSQVHAALQSSEPGQSEHTALLKEKHDVEE 120
+LL YRR LLTAQ DASKW+ AKEGF RRLSQV AALQS+EPGQ E TALLKE+ +EE
Sbjct: 61779 KLLVYRRALLTAQAVDASKWHRAKEGFARRLSQVRAALQSTEPGQRERTALLKEQSSMEE 61958
Query: 121 MLRQLQAFHHMFADAEQQLAEFDNRIENLNEARKFHTQRVRRLQRA 166
LRQLQA HHM AD QQLAE D+RIE+LN A + +TQR R+LQR+
Sbjct: 61959 QLRQLQALHHMLADPAQQLAELDSRIEDLNRAHRLYTQRFRQLQRS 62096
>ref|XM_816245.1| Trypanosoma cruzi strain CL Brener kinesin partial mRNA
Length = 2694
Score = 60.8 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 49/129 (37%), Positives = 69/129 (53%), Gaps = 6/129 (4%)
Frame = +1
Query: 42 QSTINFELQELERMEKELAELLEYRRILLTA------QTTDASKWNSAKEGFIRRLSQVH 95
Q I+ EL L +EKEL EL R L + + +KW A +GF+ RL Q+
Sbjct: 2221 QKEIDVELISLINLEKELDELTADRDELRDSVREAQERAGGMTKWKDAMKGFMMRLQQLE 2400
Query: 96 AALQSSEPGQSEHTALLKEKHDVEEMLRQLQAFHHMFADAEQQLAEFDNRIENLNEARKF 155
L S + +EK +EE LRQL+ + A A +QL E DN I++L EARK+
Sbjct: 2401 RNLHSEALNEEIRLEYSREKASIEEKLRQLELLEPVLAQASKQLEEMDNNIDSLQEARKY 2580
Query: 156 HTQRVRRLQ 164
H +RVR++Q
Sbjct: 2581 HLRRVRQMQ 2607
>ref|XM_811939.1| Trypanosoma cruzi strain CL Brener kinesin partial mRNA
Length = 2694
Score = 59.7 bits (143), Expect = 3e-07, Method: Composition-based stats.
Identities = 49/129 (37%), Positives = 68/129 (52%), Gaps = 6/129 (4%)
Frame = +1
Query: 42 QSTINFELQELERMEKELAELLEYRRILLTA------QTTDASKWNSAKEGFIRRLSQVH 95
Q I+ EL L +EKEL EL R L + + +KW A GF+ RL Q+
Sbjct: 2221 QKEIDVELISLINLEKELDELTADRDELRDSVREAQERAGGMTKWKDAMNGFMMRLQQLE 2400
Query: 96 AALQSSEPGQSEHTALLKEKHDVEEMLRQLQAFHHMFADAEQQLAEFDNRIENLNEARKF 155
L S + +EK +EE LRQL+ + A A +QL E DN I++L EARK+
Sbjct: 2401 RNLHSEVLNEEIRLEYNREKASIEEKLRQLELLEPVLAQASKQLEEMDNNIDSLQEARKY 2580
Query: 156 HTQRVRRLQ 164
H +RVR++Q
Sbjct: 2581 HLRRVRQMQ 2607
>gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome
Length = 5751492
Score = 35.8 bits (81), Expect = 4.2, Method: Composition-based stats.
Identities = 34/124 (27%), Positives = 52/124 (41%), Gaps = 4/124 (3%)
Frame = -2
Query: 13 TSPPLHFHIGGPHRSINVKLKSSRDGD--ATQSTINFELQELERMEKELAELLEYRRILL 70
TSPP F G P N+ + G +TI F +++ R K+ E++ I
Sbjct: 2980157 TSPPGKFSFGNPLPKKNMPAIMAAHGSPYVATTTIGFP-RDMIRKVKKATEIMGPTYIHA 2979981
Query: 71 TAQTTDASKWNSAKEGFIRRLSQVHA--ALQSSEPGQSEHTALLKEKHDVEEMLRQLQAF 128
A T ++++K + RL+ L E GQ +K VEE LR + F
Sbjct: 2979980 HAPCTTGWGFDTSKTLEVARLAVETCLWPLYEMENGQITQARKIKNPRPVEEYLRAQKRF 2979801
Query: 129 HHMF 132
H+F
Sbjct: 2979800 QHLF 2979789
>ref|NM_001070977.1| Oryza sativa (japonica cultivar-group) Os10g0363700 (Os10g0363700)
mRNA, complete cds
Length = 5883
Score = 35.0 bits (79), Expect = 7.8, Method: Composition-based stats.
Identities = 32/137 (23%), Positives = 67/137 (48%)
Frame = +1
Query: 28 INVKLKSSRDGDATQSTINFELQELERMEKELAELLEYRRILLTAQTTDASKWNSAKEGF 87
+++K K D DA + +NF + +E++EKEL ++ +I AQ K++
Sbjct: 3232 LDMKQKYQLDFDAMKEKLNFSEEHMEKLEKELQDMTHKFKISSEAQ----EKYSIINADL 3399
Query: 88 IRRLSQVHAALQSSEPGQSEHTALLKEKHDVEEMLRQLQAFHHMFADAEQQLAEFDNRIE 147
RL+++ LQ SE+ AL+++ D+ ++ + + A++E++ ++
Sbjct: 3400 TSRLAEMEGQLQHI---TSENEALVEKLKDIAAIVEEHERTKVTLAESEEENKTLTLSLQ 3570
Query: 148 NLNEARKFHTQRVRRLQ 164
+ +EA +R LQ
Sbjct: 3571 SKDEAMMQMENEIRSLQ 3621
>gb|AC092548.10| Oryza sativa chromosome 10 BAC OSJNBa0073L01 genomic sequence, complete
sequence
Length = 179199
Score = 35.0 bits (79), Expect = 7.8, Method: Composition-based stats.
Identities = 32/137 (23%), Positives = 67/137 (48%)
Frame = -1
Query: 28 INVKLKSSRDGDATQSTINFELQELERMEKELAELLEYRRILLTAQTTDASKWNSAKEGF 87
+++K K D DA + +NF + +E++EKEL ++ +I AQ K++
Sbjct: 125961 LDMKQKYQLDFDAMKEKLNFSEEHMEKLEKELQDMTHKFKISSEAQ----EKYSIINADL 125794
Query: 88 IRRLSQVHAALQSSEPGQSEHTALLKEKHDVEEMLRQLQAFHHMFADAEQQLAEFDNRIE 147
RL+++ LQ SE+ AL+++ D+ ++ + + A++E++ ++
Sbjct: 125793 TSRLAEMEGQLQHI---TSENEALVEKLKDIAAIVEEHERTKVTLAESEEENKTLTLSLQ 125623
Query: 148 NLNEARKFHTQRVRRLQ 164
+ +EA +R LQ
Sbjct: 125622 SKDEAMMQMENEIRSLQ 125572
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10
Length = 22685906
Score = 35.0 bits (79), Expect = 7.8, Method: Composition-based stats.
Identities = 32/137 (23%), Positives = 67/137 (48%)
Frame = -1
Query: 28 INVKLKSSRDGDATQSTINFELQELERMEKELAELLEYRRILLTAQTTDASKWNSAKEGF 87
+++K K D DA + +NF + +E++EKEL ++ +I AQ K++
Sbjct: 10795193 LDMKQKYQLDFDAMKEKLNFSEEHMEKLEKELQDMTHKFKISSEAQ----EKYSIINADL 10795026
Query: 88 IRRLSQVHAALQSSEPGQSEHTALLKEKHDVEEMLRQLQAFHHMFADAEQQLAEFDNRIE 147
RL+++ LQ SE+ AL+++ D+ ++ + + A++E++ ++
Sbjct: 10795025 TSRLAEMEGQLQHI---TSENEALVEKLKDIAAIVEEHERTKVTLAESEEENKTLTLSLQ 10794855
Query: 148 NLNEARKFHTQRVRRLQ 164
+ +EA +R LQ
Sbjct: 10794854 SKDEAMMQMENEIRSLQ 10794804
>gb|AF070485.1| Canis familiaris dystrophin mRNA, complete cds
Length = 13887
Score = 34.7 bits (78), Expect = 9.6, Method: Composition-based stats.
Identities = 30/125 (24%), Positives = 59/125 (47%)
Frame = +2
Query: 32 LKSSRDGDATQSTINFELQELERMEKELAELLEYRRILLTAQTTDASKWNSAKEGFIRRL 91
LK+ ++ I ++ ++ E+ E L+ RR+ LT D+++W AKE + L
Sbjct: 7883 LKNKTSNQEARTIITDRIERIQSQWDEVQEHLQNRRLQLTEMLKDSTQWLEAKEEAEQVL 8062
Query: 92 SQVHAALQSSEPGQSEHTALLKEKHDVEEMLRQLQAFHHMFADAEQQLAEFDNRIENLNE 151
Q A L+S + A+ K+ + +++ + L+ + + D LA R + ++
Sbjct: 8063 GQARAKLESWKEAPYTVDAIQKKITETKQLAKDLRQW-QINVDVANDLALKLLRDYSADD 8239
Query: 152 ARKFH 156
RK H
Sbjct: 8240 TRKVH 8254
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.317 0.129 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 448884048
Number of extensions: 4887073
Number of successful extensions: 36848
Number of sequences better than 10: 20
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 36829
Number of HSP's successfully gapped: 54
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 16 (7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 78 (34.7 bits)
Query= gi|154333023|ref|NC_009301.1|:subseq(59248,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 9
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
ref|XM_001562581.1| Leishmania braziliensis MHOM/BR/75/M2904 kin... 185 4e-45
emb|AM494946.1| Leishmania braziliensis chromosome 9 185 4e-45
ref|XM_001463435.1| Leishmania infantum JPCM5 kinesin, putative ... 96 5e-18
emb|AM502227.1| Leishmania infantum chromosome 9 96 5e-18
ref|XM_001681124.1| Leishmania major kinesin, putative (LmjF09.0... 84 2e-14
ref|XM_002157453.1| PREDICTED: Hydra magnipapillata similar to C... 42 0.076
>ref|XM_001562581.1| Leishmania braziliensis MHOM/BR/75/M2904 kinesin, putative
(LbrM09_V2.0150) partial mRNA
Length = 3264
Score = 185 bits (469), Expect = 4e-45, Method: Composition-based stats.
Identities = 150/166 (90%), Positives = 150/166 (90%)
Frame = +2
Query: 1 RASSRLARTPTUHRLRCTFISVVPTAASMUSURAHATATRPXXXXXXXXXXXXEWKRSWQ 60
RASSRLARTPT HRLRCTFISVVPTAASM S RAHATATRP EWKRSWQ
Sbjct: 2600 RASSRLARTPT*HRLRCTFISVVPTAASM*S*RAHATATRPSQPSTSSCKS*SEWKRSWQ 2779
Query: 61 SCWSTAASSXPLKQLMPPSGTVPRRVSYGGSRKFTLHCSLVSRASPSTQPFSRKSTMWRK 120
SCWSTAASS PLKQLMPPSGTVPRRVSYGGSRKFTLHCSLVSRASPSTQPFSRKSTMWRK
Sbjct: 2780 SCWSTAASS*PLKQLMPPSGTVPRRVSYGGSRKFTLHCSLVSRASPSTQPFSRKSTMWRK 2959
Query: 121 CFDSCRRSTTCSLMPNSNWPNSITASRTSTKHASSTHSGFADCSVQ 166
CFDSCRRSTTCSLMPNSNWPNSITASRTSTKHASSTHSGFADCSVQ
Sbjct: 2960 CFDSCRRSTTCSLMPNSNWPNSITASRTSTKHASSTHSGFADCSVQ 3097
>emb|AM494946.1| Leishmania braziliensis chromosome 9
Length = 556710
Score = 185 bits (469), Expect = 4e-45, Method: Composition-based stats.
Identities = 150/166 (90%), Positives = 150/166 (90%)
Frame = +1
Query: 1 RASSRLARTPTUHRLRCTFISVVPTAASMUSURAHATATRPXXXXXXXXXXXXEWKRSWQ 60
RASSRLARTPT HRLRCTFISVVPTAASM S RAHATATRP EWKRSWQ
Sbjct: 59251 RASSRLARTPT*HRLRCTFISVVPTAASM*S*RAHATATRPSQPSTSSCKS*SEWKRSWQ 59430
Query: 61 SCWSTAASSXPLKQLMPPSGTVPRRVSYGGSRKFTLHCSLVSRASPSTQPFSRKSTMWRK 120
SCWSTAASS PLKQLMPPSGTVPRRVSYGGSRKFTLHCSLVSRASPSTQPFSRKSTMWRK
Sbjct: 59431 SCWSTAASS*PLKQLMPPSGTVPRRVSYGGSRKFTLHCSLVSRASPSTQPFSRKSTMWRK 59610
Query: 121 CFDSCRRSTTCSLMPNSNWPNSITASRTSTKHASSTHSGFADCSVQ 166
CFDSCRRSTTCSLMPNSNWPNSITASRTSTKHASSTHSGFADCSVQ
Sbjct: 59611 CFDSCRRSTTCSLMPNSNWPNSITASRTSTKHASSTHSGFADCSVQ 59748
>ref|XM_001463435.1| Leishmania infantum JPCM5 kinesin, putative (LinJ09.0150) mRNA,
complete cds
Length = 3255
Score = 95.5 bits (236), Expect = 5e-18, Method: Composition-based stats.
Identities = 80/166 (48%), Positives = 92/166 (55%)
Frame = +2
Query: 1 RASSRLARTPTUHRLRCTFISVVPTAASMUSURAHATATRPXXXXXXXXXXXXEWKRSWQ 60
R SSRLART T HRL F+ + T ASM RAHA ATR +++RSW
Sbjct: 2513 RTSSRLARTSTCHRLGRDFMRMGFTVASMVPCRAHAPATRRRRPSSASCKAWSKYRRSWP 2692
Query: 61 SCWSTAASSXPLKQLMPPSGTVPRRVSYGGSRKFTLHCSLVSRASPSTQPFSRKSTMWRK 120
S W AA P K LM PSGT RR G S +F L CS SRAS S + FSR WR
Sbjct: 2693 SYWCIAAPC*PRKPLMHPSGTALRRALRGDSHRFALRCSPPSRASASARLFSRSKAAWRS 2872
Query: 121 CFDSCRRSTTCSLMPNSNWPNSITASRTSTKHASSTHSGFADCSVQ 166
FDSC+RSTTCS S+W +S SRT T T S FA+CS +
Sbjct: 2873 SFDSCKRSTTCSPTLRSSWLSSTAVSRT*TGRTGFTRSAFANCSAR 3010
>emb|AM502227.1| Leishmania infantum chromosome 9
Length = 570592
Score = 95.5 bits (236), Expect = 5e-18, Method: Composition-based stats.
Identities = 80/166 (48%), Positives = 92/166 (55%)
Frame = +1
Query: 1 RASSRLARTPTUHRLRCTFISVVPTAASMUSURAHATATRPXXXXXXXXXXXXEWKRSWQ 60
R SSRLART T HRL F+ + T ASM RAHA ATR +++RSW
Sbjct: 61600 RTSSRLARTSTCHRLGRDFMRMGFTVASMVPCRAHAPATRRRRPSSASCKAWSKYRRSWP 61779
Query: 61 SCWSTAASSXPLKQLMPPSGTVPRRVSYGGSRKFTLHCSLVSRASPSTQPFSRKSTMWRK 120
S W AA P K LM PSGT RR G S +F L CS SRAS S + FSR WR
Sbjct: 61780 SYWCIAAPC*PRKPLMHPSGTALRRALRGDSHRFALRCSPPSRASASARLFSRSKAAWRS 61959
Query: 121 CFDSCRRSTTCSLMPNSNWPNSITASRTSTKHASSTHSGFADCSVQ 166
FDSC+RSTTCS S+W +S SRT T T S FA+CS +
Sbjct: 61960 SFDSCKRSTTCSPTLRSSWLSSTAVSRT*TGRTGFTRSAFANCSAR 62097
>ref|XM_001681124.1| Leishmania major kinesin, putative (LmjF09.0120) mRNA, complete cds
Length = 3198
Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 80/166 (48%), Positives = 90/166 (54%)
Frame = +2
Query: 1 RASSRLARTPTUHRLRCTFISVVPTAASMUSURAHATATRPXXXXXXXXXXXXEWKRSWQ 60
R SSR RTPT HRL FI + T AS RAHAT R E++RSW
Sbjct: 2519 RTSSRFTRTPTRHRLGRVFIHMGFTVASTVPCRAHATRRR--RPSTASCKT*SEYRRSWS 2692
Query: 61 SCWSTAASSXPLKQLMPPSGTVPRRVSYGGSRKFTLHCSLVSRASPSTQPFSRKSTMWRK 120
SC A P + LM PSGT R G S +F LH SL SRAS STQ FSR+ T R
Sbjct: 2693 SC*CIAVPC*PRQPLMHPSGTALRMALRGDSHRFKLHFSLPSRASASTQLFSRRKTT*RS 2872
Query: 121 CFDSCRRSTTCSLMPNSNWPNSITASRTSTKHASSTHSGFADCSVQ 166
FDSC+RS TC P SNW +S T SRT T ST S F +CS +
Sbjct: 2873 NFDSCKRSATCLPTPLSNWLSSTTVSRT*TGRTGSTRSAFVNCSAR 3010
>ref|XM_002157453.1| PREDICTED: Hydra magnipapillata similar to Carboxypeptidase A2
(LOC100205686), mRNA
Length = 1389
Score = 41.6 bits (96), Expect = 0.076, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 23/43 (53%)
Frame = +1
Query: 117 MWRKCFDSCRRSTTCSLMPNSNWPNSITASRTSTKHASSTHSG 159
MWRK +CR S C + PN NW N+ + TST S + G
Sbjct: 718 MWRKTRSNCRISRCCGVDPNRNWANNFGGAGTSTDQCSEIYRG 846
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.321 0.123 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 641521597
Number of extensions: 11068266
Number of successful extensions: 110372
Number of sequences better than 10: 52
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 110031
Number of HSP's successfully gapped: 63
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 16 (7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.0 bits)
S2: 78 (34.7 bits)
Query= gi|154333356|ref|NC_009302.1|:subseq(49119,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 10:[revcomp]
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
emb|AM494945.1| Leishmania braziliensis chromosome 8 181 5e-44
emb|AM494947.1| Leishmania braziliensis chromosome 10 167 8e-40
>emb|AM494945.1| Leishmania braziliensis chromosome 8
Length = 470112
Score = 181 bits (460), Expect = 5e-44, Method: Composition-based stats.
Identities = 103/166 (62%), Positives = 103/166 (62%)
Frame = +3
Query: 1 VQVSKALVCRLEDLAQSTRPEATLSAESWYPPAPAARRSGCRLGTRCGVRVHFLRXXXXX 60
VQVSKALVCRLED AQSTRPEATLSAESWYPPAPAARRSGCRLGTRCGVRVHFLR
Sbjct: 449901 VQVSKALVCRLEDHAQSTRPEATLSAESWYPPAPAARRSGCRLGTRCGVRVHFLRLCPPS 450080
Query: 61 XXXXXXXXXXXXXXXXXXRRVCRVHRUALPPHVRVGAIGWPPFFRGXXXXXXXXXXXXXX 120
RRVCRVHR ALPPHVRVGAIGWPPFFRG
Sbjct: 450081 PAPGPPPCGAAAAPPLPARRVCRVHR*ALPPHVRVGAIGWPPFFRGARVALSRACRLAAL 450260
Query: 121 XXXXXXXXXXXFHPARLSHATRPLXXXXXXXXXXXXSLLCEDPTRP 166
FHPARLSHA RPL SLLCEDPTRP
Sbjct: 450261 SPTSLSVSPLPFHPARLSHAARPLTTNTHAHAAAPTSLLCEDPTRP 450398
Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats.
Identities = 103/166 (62%), Positives = 104/166 (62%)
Frame = +3
Query: 1 VQVSKALVCRLEDLAQSTRPEATLSAESWYPPAPAARRSGCRLGTRCGVRVHFLRXXXXX 60
VQVSKAL+CRLEDLAQSTRPEATLSAESWYPPAPAARRSGCRLGTRCGVRVHFLR
Sbjct: 446751 VQVSKALICRLEDLAQSTRPEATLSAESWYPPAPAARRSGCRLGTRCGVRVHFLRLCPPS 446930
Query: 61 XXXXXXXXXXXXXXXXXXRRVCRVHRUALPPHVRVGAIGWPPFFRGXXXXXXXXXXXXXX 120
RRVCRVHR ALPPHVRVGAIGWPPFFRG
Sbjct: 446931 PAPGPPPCGAAAAPPLPARRVCRVHR*ALPPHVRVGAIGWPPFFRGARVALSRACRLAAL 447110
Query: 121 XXXXXXXXXXXFHPARLSHATRPLXXXXXXXXXXXXSLLCEDPTRP 166
FHPARLSHA RPL SLLCEDPTRP
Sbjct: 447111 SPTSLSVSPLPFHPARLSHAARPLTTNTHAHAAAPTSLLCEDPTRP 447248
Score = 93.6 bits (231), Expect = 2e-17, Method: Composition-based stats.
Identities = 52/54 (96%), Positives = 53/54 (98%)
Frame = +1
Query: 1 VQVSKALVCRLEDLAQSTRPEATLSAESWYPPAPAARRSGCRLGTRCGVRVHFL 54
VQVSKALVCRLED AQSTRPEATLSAESWYPPAPAARRSGCRLGTRCGVRV+FL
Sbjct: 398086 VQVSKALVCRLEDHAQSTRPEATLSAESWYPPAPAARRSGCRLGTRCGVRVNFL 398247
Score = 83.2 bits (204), Expect = 2e-14, Method: Composition-based stats.
Identities = 50/55 (90%), Positives = 52/55 (94%), Gaps = 1/55 (1%)
Frame = +3
Query: 1 VQVSKALVCRLEDLAQSTRPEATLSAESWYPPAPAA-RRSGCRLGTRCGVRVHFL 54
VQVSKAL+CRLED AQSTRPEATLSAESW PPAPAA RRSGCRLGTRCGVRV+FL
Sbjct: 401895 VQVSKALICRLEDHAQSTRPEATLSAESWCPPAPAARRRSGCRLGTRCGVRVNFL 402059
Score = 75.9 bits (185), Expect = 4e-12, Method: Composition-based stats.
Identities = 40/78 (51%), Positives = 40/78 (51%)
Frame = +3
Query: 89 LPPHVRVGAIGWPPFFRGXXXXXXXXXXXXXXXXXXXXXXXXXFHPARLSHATRPLXXXX 148
LPPHVRVGAIGWPPFFRG FHPARLSHA RPL
Sbjct: 443868 LPPHVRVGAIGWPPFFRGARVALSRACRLAALSPTSLSVSPLPFHPARLSHAARPLTTNT 444047
Query: 149 XXXXXXXXSLLCEDPTRP 166
SLLCEDPTRP
Sbjct: 444048 HAHAAAPTSLLCEDPTRP 444101
Score = 37.0 bits (84), Expect = 2.1, Method: Composition-based stats.
Identities = 19/35 (54%), Positives = 19/35 (54%)
Frame = +2
Query: 132 FHPARLSHATRPLXXXXXXXXXXXXSLLCEDPTRP 166
FHPARLSHA RPL SLLCED P
Sbjct: 398396 FHPARLSHAARPLTTNTHAHAAAPTSLLCEDSPPP 398500
>emb|AM494947.1| Leishmania braziliensis chromosome 10
Length = 612479
Score = 167 bits (424), Expect = 8e-40, Method: Composition-based stats.
Identities = 105/166 (63%), Positives = 105/166 (63%)
Frame = -1
Query: 1 VQVSKALVCRLEDLAQSTRPEATLSAESWYPPAPAARRSGCRLGTRCGVRVHFLRXXXXX 60
VQVSKALVCRLEDLAQSTRPEATLSAESWYPPAPAARRSGCRLGTRCGVRVHFLR
Sbjct: 563360 VQVSKALVCRLEDLAQSTRPEATLSAESWYPPAPAARRSGCRLGTRCGVRVHFLRLCPPS 563181
Query: 61 XXXXXXXXXXXXXXXXXXRRVCRVHRUALPPHVRVGAIGWPPFFRGXXXXXXXXXXXXXX 120
RRVCRVHR ALPPHVRVGAIGWPPFFRG
Sbjct: 563180 PAPGPPPCGAAAAPPLPARRVCRVHR*ALPPHVRVGAIGWPPFFRGARVALSRACRLAAL 563001
Query: 121 XXXXXXXXXXXFHPARLSHATRPLXXXXXXXXXXXXSLLCEDPTRP 166
FHPARLSHATRPL SLLCEDPTRP
Sbjct: 563000 SPTSLSVSPLPFHPARLSHATRPLTTNTHAHAAAPTSLLCEDPTRP 562863
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.327 0.139 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 475729655
Number of extensions: 5246898
Number of successful extensions: 61708
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 61685
Number of HSP's successfully gapped: 0
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 15 (7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.0 bits)
S2: 78 (34.7 bits)
Query= gi|154333356|ref|NC_009302.1|:subseq(49119,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 10:[revcomp]
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
emb|AM494945.1| Leishmania braziliensis chromosome 8 162 3e-38
emb|AM494947.1| Leishmania braziliensis chromosome 10 162 4e-38
>emb|AM494945.1| Leishmania braziliensis chromosome 8
Length = 470112
Score = 162 bits (410), Expect = 3e-38, Method: Composition-based stats.
Identities = 111/166 (66%), Positives = 111/166 (66%)
Frame = +1
Query: 1 CRCLRPSSAGWRTSPRARALRPHSQQSHGTRPRPLLGEADAGLGRAAASVCTSSDCXXXX 60
CRCLRPSSAGWRTSPRARALRPHSQQSHGTRPRPLLGEADAGLGRAAASVCTSSDC
Sbjct: 446752 CRCLRPSSAGWRTSPRARALRPHSQQSHGTRPRPLLGEADAGLGRAAASVCTSSDCALRP 446931
Query: 61 XXXXXXXXXXXXXXXXXXGVCVASTGERFLRTCVWAPSDGPPSFAVRVSHSRVXXXXXXX 120
GVCVASTGERFLRTCVWAPSDGPPSFAVRVSHSRV
Sbjct: 446932 LRPAPLRVALLPLPRCRRGVCVASTGERFLRTCVWAPSDGPPSFAVRVSHSRVPAASPHS 447111
Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXTRTHTRQHQRVCFAKTRLAL 166
TRTHTRQHQRVCFAKTRLAL
Sbjct: 447112 PPPLSPSLLSPSTLPASLMPPALSPPTRTHTRQHQRVCFAKTRLAL 447249
Score = 161 bits (408), Expect = 6e-38, Method: Composition-based stats.
Identities = 109/166 (65%), Positives = 110/166 (66%)
Frame = +1
Query: 1 CRCLRPSSAGWRTSPRARALRPHSQQSHGTRPRPLLGEADAGLGRAAASVCTSSDCXXXX 60
CRCLRPSSAGWRT+PRARALRPHSQQSHGTRPRPLLGEADAGLGRAAASVC SSDC
Sbjct: 449902 CRCLRPSSAGWRTTPRARALRPHSQQSHGTRPRPLLGEADAGLGRAAASVCISSDCALRP 450081
Query: 61 XXXXXXXXXXXXXXXXXXGVCVASTGERFLRTCVWAPSDGPPSFAVRVSHSRVXXXXXXX 120
GVCVASTGERFLRTCVWAPSDGPPSFAVRVSHSRV
Sbjct: 450082 LRPAPLRVALLPLPRCRRGVCVASTGERFLRTCVWAPSDGPPSFAVRVSHSRVPAASPHS 450261
Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXTRTHTRQHQRVCFAKTRLAL 166
TRTHTRQHQRVCFAKTRLAL
Sbjct: 450262 PPPLSPSLLSPSTLPASLMPPALSPPTRTHTRQHQRVCFAKTRLAL 450399
Score = 93.2 bits (230), Expect = 2e-17, Method: Composition-based stats.
Identities = 53/56 (94%), Positives = 54/56 (96%)
Frame = +2
Query: 1 CRCLRPSSAGWRTSPRARALRPHSQQSHGTRPRPLLGEADAGLGRAAASVCTSSDC 56
CRCLRPSSAGWRT+PRARALRPHSQQSHGTRPRPLLGEADAGLGRAAASV SSDC
Sbjct: 398087 CRCLRPSSAGWRTTPRARALRPHSQQSHGTRPRPLLGEADAGLGRAAASV*ISSDC 398254
Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 52/57 (91%), Positives = 53/57 (92%), Gaps = 1/57 (1%)
Frame = +1
Query: 1 CRCLRPSSAGWRTSPRARALRPHSQQSHGTRPRPLLG-EADAGLGRAAASVCTSSDC 56
CRCLRPSSAGWRT+PRARALRPHSQQSHG RPRPLLG EADAGLGRAAASV SSDC
Sbjct: 401896 CRCLRPSSAGWRTTPRARALRPHSQQSHGARPRPLLGEEADAGLGRAAASV*ISSDC 402066
Score = 68.9 bits (167), Expect = 5e-10, Method: Composition-based stats.
Identities = 45/78 (57%), Positives = 45/78 (57%)
Frame = +1
Query: 89 FLRTCVWAPSDGPPSFAVRVSHSRVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTR 148
FLRTCVWAPSDGPPSFAVRVSHSRV TR
Sbjct: 443869 FLRTCVWAPSDGPPSFAVRVSHSRVPAASPHSPPPLSPSLLSPSTLPASLMPPALSPPTR 444048
Query: 149 THTRQHQRVCFAKTRLAL 166
THTRQHQRVCFAKTRLAL
Sbjct: 444049 THTRQHQRVCFAKTRLAL 444102
Score = 35.4 bits (80), Expect = 6.1, Method: Composition-based stats.
Identities = 18/20 (90%), Positives = 18/20 (90%)
Frame = -1
Query: 147 TRTHTRQHQRVCFAKTRLAL 166
TRTHTRQHQR C AKTRLAL
Sbjct: 465027 TRTHTRQHQRHCCAKTRLAL 464968
>emb|AM494947.1| Leishmania braziliensis chromosome 10
Length = 612479
Score = 162 bits (409), Expect = 4e-38, Method: Composition-based stats.
Identities = 111/166 (66%), Positives = 111/166 (66%)
Frame = -2
Query: 1 CRCLRPSSAGWRTSPRARALRPHSQQSHGTRPRPLLGEADAGLGRAAASVCTSSDCXXXX 60
CRCLRPSSAGWRTSPRARALRPHSQQSHGTRPRPLLGEADAGLGRAAASVCTSSDC
Sbjct: 563359 CRCLRPSSAGWRTSPRARALRPHSQQSHGTRPRPLLGEADAGLGRAAASVCTSSDCALRP 563180
Query: 61 XXXXXXXXXXXXXXXXXXGVCVASTGERFLRTCVWAPSDGPPSFAVRVSHSRVXXXXXXX 120
GVCVASTGERFLRTCVWAPSDGPPSFAVRVSHSRV
Sbjct: 563179 LRPAPLRVALLPLPRCRRGVCVASTGERFLRTCVWAPSDGPPSFAVRVSHSRVPAASPHS 563000
Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXTRTHTRQHQRVCFAKTRLAL 166
TRTHTRQHQRVCFAKTRLAL
Sbjct: 562999 PPPLSPSLLSPSTLPASLMPPALSPPTRTHTRQHQRVCFAKTRLAL 562862
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.323 0.131 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 489028764
Number of extensions: 6042707
Number of successful extensions: 76087
Number of sequences better than 10: 9
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 76029
Number of HSP's successfully gapped: 9
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 16 (7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.0 bits)
S2: 78 (34.7 bits)
Query= gi|154333356|ref|NC_009302.1|:subseq(49119,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 10:[revcomp]
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
emb|AM494947.1| Leishmania braziliensis chromosome 10 134 1e-29
emb|AM494945.1| Leishmania braziliensis chromosome 8 134 1e-29
>emb|AM494947.1| Leishmania braziliensis chromosome 10
Length = 612479
Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats.
Identities = 100/151 (66%), Positives = 100/151 (66%)
Frame = -3
Query: 16 EHAPUGHTLSRVMVPARARCXEKRMPAWDALRRPCALPPTVPSVPCARPPSVWRCCRSPA 75
EHAP GHTLSRVMVPARARC EKRMPAWDALRRPCALPPTVPSVPCARPPSVWRCCRSPA
Sbjct: 563313 EHAP*GHTLSRVMVPARARC*EKRMPAWDALRRPCALPPTVPSVPCARPPSVWRCCRSPA 563134
Query: 76 AGXXXXXXXXXXXXXXXXXGRHRMAPLLSRCACRTLACXXXXXXXXXXXXXXXXXXXXXX 135
AG GRHRMAPLLSRCACRTLAC
Sbjct: 563133 AGAACVSRPPVSASSARACGRHRMAPLLSRCACRTLACLPPRRTLPHLSLRLSSPLPPCP 562954
Query: 136 XXXXXXXXXXQHARTRGSTNEFALRRPDSPS 166
QHARTRGSTNEFALRRPDSPS
Sbjct: 562953 PLSCHPPSHHQHARTRGSTNEFALRRPDSPS 562861
>emb|AM494945.1| Leishmania braziliensis chromosome 8
Length = 470112
Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats.
Identities = 100/151 (66%), Positives = 100/151 (66%)
Frame = +2
Query: 16 EHAPUGHTLSRVMVPARARCXEKRMPAWDALRRPCALPPTVPSVPCARPPSVWRCCRSPA 75
EHAP GHTLSRVMVPARARC EKRMPAWDALRRPCALPPTVPSVPCARPPSVWRCCRSPA
Sbjct: 446798 EHAP*GHTLSRVMVPARARC*EKRMPAWDALRRPCALPPTVPSVPCARPPSVWRCCRSPA 446977
Query: 76 AGXXXXXXXXXXXXXXXXXGRHRMAPLLSRCACRTLACXXXXXXXXXXXXXXXXXXXXXX 135
AG GRHRMAPLLSRCACRTLAC
Sbjct: 446978 AGAACVSRPPVSASSARACGRHRMAPLLSRCACRTLACLPPRRTLPHLSLRLSSPLPPCP 447157
Query: 136 XXXXXXXXXXQHARTRGSTNEFALRRPDSPS 166
QHARTRGSTNEFALRRPDSPS
Sbjct: 447158 PLSCRPPSHHQHARTRGSTNEFALRRPDSPS 447250
Score = 132 bits (333), Expect = 3e-29, Method: Composition-based stats.
Identities = 99/151 (65%), Positives = 99/151 (65%)
Frame = +2
Query: 16 EHAPUGHTLSRVMVPARARCXEKRMPAWDALRRPCALPPTVPSVPCARPPSVWRCCRSPA 75
EHAP GHTLSRVMVPARARC EKRMPAWDALRRPCA PPTVPSVPCARPPSVWRCCRSPA
Sbjct: 449948 EHAP*GHTLSRVMVPARARC*EKRMPAWDALRRPCAFPPTVPSVPCARPPSVWRCCRSPA 450127
Query: 76 AGXXXXXXXXXXXXXXXXXGRHRMAPLLSRCACRTLACXXXXXXXXXXXXXXXXXXXXXX 135
AG GRHRMAPLLSRCACRTLAC
Sbjct: 450128 AGAACVSRPPVSASSARACGRHRMAPLLSRCACRTLACLPPRRTLPHLSLRLSSPLPPCP 450307
Query: 136 XXXXXXXXXXQHARTRGSTNEFALRRPDSPS 166
QHARTRGSTNEFALRRPDSPS
Sbjct: 450308 PLSCRPPSHHQHARTRGSTNEFALRRPDSPS 450400
Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 57/63 (90%), Positives = 57/63 (90%), Gaps = 1/63 (1%)
Frame = +2
Query: 16 EHAPUGHTLSRVMVPARARCXEK-RMPAWDALRRPCALPPTVPSVPCARPPSVWRCCRSP 74
EHAP GHTLSRVMVPARARC EK RMPAWDALRRPC P TVPSVPCARPPSVWRCCRSP
Sbjct: 401942 EHAP*GHTLSRVMVPARARC*EKKRMPAWDALRRPCEFPLTVPSVPCARPPSVWRCCRSP 402121
Query: 75 AAG 77
AAG
Sbjct: 402122 AAG 402130
Score = 79.3 bits (194), Expect = 3e-13, Method: Composition-based stats.
Identities = 57/62 (91%), Positives = 57/62 (91%)
Frame = +3
Query: 16 EHAPUGHTLSRVMVPARARCXEKRMPAWDALRRPCALPPTVPSVPCARPPSVWRCCRSPA 75
EHAP GHTLSRVMVPARARC EKRMPAWDALRRPC P TVPSVPCARPPSVWRCCRSPA
Sbjct: 398133 EHAP*GHTLSRVMVPARARC*EKRMPAWDALRRPCEFPLTVPSVPCARPPSVWRCCRSPA 398312
Query: 76 AG 77
AG
Sbjct: 398313 AG 398318
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 40/72 (55%), Positives = 40/72 (55%)
Frame = +2
Query: 95 GRHRMAPLLSRCACRTLACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQHARTRGST 154
GRHRMAPLLSRCACRTLAC QHARTRGST
Sbjct: 443888 GRHRMAPLLSRCACRTLACLPPRRTLPHLSLRLSSPLPPCPPLSCRPPSHHQHARTRGST 444067
Query: 155 NEFALRRPDSPS 166
NEFALRRPDSPS
Sbjct: 444068 NEFALRRPDSPS 444103
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.330 0.137 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 457016635
Number of extensions: 7569358
Number of successful extensions: 133179
Number of sequences better than 10: 20
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 132635
Number of HSP's successfully gapped: 20
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 15 (7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.0 bits)
S2: 78 (34.7 bits)
Query= gi|154333587|ref|NC_009303.1|:subseq(397492,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 11:[revcomp]
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
ref|XM_001562921.1| Leishmania braziliensis MHOM/BR/75/M2904 hyp... 301 5e-80
emb|AM494948.1| Leishmania braziliensis chromosome 11 301 5e-80
>ref|XM_001562921.1| Leishmania braziliensis MHOM/BR/75/M2904 hypothetical protein,
unknown function (LbrM11_V2.0360) partial mRNA
Length = 2697
Score = 301 bits (770), Expect = 5e-80, Method: Composition-based stats.
Identities = 163/165 (98%), Positives = 163/165 (98%)
Frame = -2
Query: 1 TKHSWPILAATCCVIICGTLRVRSTTAIUETIELLAKRSLKLLYAPASFVRSFTMAKVPG 60
TKHSWPILAATCCVIICGTLRVRSTTAI ETIELLAKRSLKLLYAPASFVRSFTMAKVPG
Sbjct: 1793 TKHSWPILAATCCVIICGTLRVRSTTAI*ETIELLAKRSLKLLYAPASFVRSFTMAKVPG 1614
Query: 61 PSVIRCAAESKLVFLGEGRATLYFWSQUVMLPFMKYSSMSSVLNSHGWLGCCKSFSPSAK 120
PSVIRCAAESKLVFLGEGRATLYFWSQ VMLPFMKYSSMSSVLNSHGWLGCCKSFSPSAK
Sbjct: 1613 PSVIRCAAESKLVFLGEGRATLYFWSQ*VMLPFMKYSSMSSVLNSHGWLGCCKSFSPSAK 1434
Query: 121 PAWPVYSAVLIRLNMFGPDGT*MVGAGSTLPDTFTNCGWMRTPYC 165
PAWPVYSAVLIRLNMFGPDGT*MVGAGSTLPDTFTNCGWMRTPYC
Sbjct: 1433 PAWPVYSAVLIRLNMFGPDGT*MVGAGSTLPDTFTNCGWMRTPYC 1299
>emb|AM494948.1| Leishmania braziliensis chromosome 11
Length = 558624
Score = 301 bits (770), Expect = 5e-80, Method: Composition-based stats.
Identities = 163/165 (98%), Positives = 163/165 (98%)
Frame = -2
Query: 1 TKHSWPILAATCCVIICGTLRVRSTTAIUETIELLAKRSLKLLYAPASFVRSFTMAKVPG 60
TKHSWPILAATCCVIICGTLRVRSTTAI ETIELLAKRSLKLLYAPASFVRSFTMAKVPG
Sbjct: 161132 TKHSWPILAATCCVIICGTLRVRSTTAI*ETIELLAKRSLKLLYAPASFVRSFTMAKVPG 160953
Query: 61 PSVIRCAAESKLVFLGEGRATLYFWSQUVMLPFMKYSSMSSVLNSHGWLGCCKSFSPSAK 120
PSVIRCAAESKLVFLGEGRATLYFWSQ VMLPFMKYSSMSSVLNSHGWLGCCKSFSPSAK
Sbjct: 160952 PSVIRCAAESKLVFLGEGRATLYFWSQ*VMLPFMKYSSMSSVLNSHGWLGCCKSFSPSAK 160773
Query: 121 PAWPVYSAVLIRLNMFGPDGT*MVGAGSTLPDTFTNCGWMRTPYC 165
PAWPVYSAVLIRLNMFGPDGT*MVGAGSTLPDTFTNCGWMRTPYC
Sbjct: 160772 PAWPVYSAVLIRLNMFGPDGT*MVGAGSTLPDTFTNCGWMRTPYC 160638
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.328 0.137 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 645296641
Number of extensions: 9312714
Number of successful extensions: 77990
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 77969
Number of HSP's successfully gapped: 0
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 15 (7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.0 bits)
S2: 78 (34.7 bits)
Query= gi|154333587|ref|NC_009303.1|:subseq(397492,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 11:[revcomp]
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
ref|XM_001562921.1| Leishmania braziliensis MHOM/BR/75/M2904 hyp... 91 1e-16
emb|AM494948.1| Leishmania braziliensis chromosome 11 91 1e-16
>ref|XM_001562921.1| Leishmania braziliensis MHOM/BR/75/M2904 hypothetical protein,
unknown function (LbrM11_V2.0360) partial mRNA
Length = 2697
Score = 91.3 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 83/144 (57%), Positives = 83/144 (57%)
Frame = -3
Query: 23 GPPRPSEKQXSFLQXXXXXXXXXXXXXXXXXXWQKCPAPLUYXXXXXXXXXXXXXXXXXC 82
GPPRPSEKQ SFLQ WQKCPAPL Y C
Sbjct: 1726 GPPRPSEKQ*SFLQSAP*SCCTPLPPLCAASPWQKCPAPL*YAAQPSRSSSSSERAEPRC 1547
Query: 83 TSGANEUCYHSUSTRPUAVSXTHMXXXXXXXXXXXXXXXXXXCTQRCXSGUTCSAPTVRR 142
TSGANE CYHS STRP AVS THM CTQRC SG TCSAPTVRR
Sbjct: 1546 TSGANE*CYHS*STRP*AVS*THMAGSDAASPSAQAQSQPGPCTQRC*SG*TCSAPTVRR 1367
Query: 143 WWGPAVPCPTPSQTAAGCERRTAE 166
WWGPAVPCPTPSQTAAGCERRTAE
Sbjct: 1366 WWGPAVPCPTPSQTAAGCERRTAE 1295
>emb|AM494948.1| Leishmania braziliensis chromosome 11
Length = 558624
Score = 91.3 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 83/144 (57%), Positives = 83/144 (57%)
Frame = -3
Query: 23 GPPRPSEKQXSFLQXXXXXXXXXXXXXXXXXXWQKCPAPLUYXXXXXXXXXXXXXXXXXC 82
GPPRPSEKQ SFLQ WQKCPAPL Y C
Sbjct: 161065 GPPRPSEKQ*SFLQSAP*SCCTPLPPLCAASPWQKCPAPL*YAAQPSRSSSSSERAEPRC 160886
Query: 83 TSGANEUCYHSUSTRPUAVSXTHMXXXXXXXXXXXXXXXXXXCTQRCXSGUTCSAPTVRR 142
TSGANE CYHS STRP AVS THM CTQRC SG TCSAPTVRR
Sbjct: 160885 TSGANE*CYHS*STRP*AVS*THMAGSDAASPSAQAQSQPGPCTQRC*SG*TCSAPTVRR 160706
Query: 143 WWGPAVPCPTPSQTAAGCERRTAE 166
WWGPAVPCPTPSQTAAGCERRTAE
Sbjct: 160705 WWGPAVPCPTPSQTAAGCERRTAE 160634
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.333 0.137 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 405807580
Number of extensions: 4734804
Number of successful extensions: 83815
Number of sequences better than 10: 2
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 83694
Number of HSP's successfully gapped: 2
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 15 (7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (19.6 bits)
S2: 78 (34.7 bits)
Query= gi|154333587|ref|NC_009303.1|:subseq(397492,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 11:[revcomp]
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
ref|XM_001562921.1| Leishmania braziliensis MHOM/BR/75/M2904 hyp... 266 1e-69
emb|AM494948.1| Leishmania braziliensis chromosome 11 266 1e-69
>ref|XM_001562921.1| Leishmania braziliensis MHOM/BR/75/M2904 hypothetical protein,
unknown function (LbrM11_V2.0360) partial mRNA
Length = 2697
Score = 266 bits (681), Expect = 1e-69, Method: Composition-based stats.
Identities = 154/166 (92%), Positives = 154/166 (92%)
Frame = -1
Query: 1 EAQLANXXXXXXXXXXXXVAREVHHGHLRNNRASCKALLEVVVRPCLLCAQLHHGKSARP 60
EAQLAN VAREVHHGHLRNNRASCKALLEVVVRPCLLCAQLHHGKSARP
Sbjct: 1791 EAQLANLSSHLLRDHLRHVAREVHHGHLRNNRASCKALLEVVVRPCLLCAQLHHGKSARP 1612
Query: 61 LCDTLRSRVEARLPRRGQSHVVLLEPMSDVTIHEVLVHEQCLKLTWLARMLQVLQPKRKA 120
LCDTLRSRVEARLPRRGQSHVVLLEPMSDVTIHEVLVHEQCLKLTWLARMLQVLQPKRKA
Sbjct: 1611 LCDTLRSRVEARLPRRGQSHVVLLEPMSDVTIHEVLVHEQCLKLTWLARMLQVLQPKRKA 1432
Query: 121 SLARVLSGVNPVEHVRPRRYVDGGGRQYPARHLHKLRLDANAVLLK 166
SLARVLSGVNPVEHVRPRRYVDGGGRQYPARHLHKLRLDANAVLLK
Sbjct: 1431 SLARVLSGVNPVEHVRPRRYVDGGGRQYPARHLHKLRLDANAVLLK 1294
>emb|AM494948.1| Leishmania braziliensis chromosome 11
Length = 558624
Score = 266 bits (681), Expect = 1e-69, Method: Composition-based stats.
Identities = 154/166 (92%), Positives = 154/166 (92%)
Frame = -1
Query: 1 EAQLANXXXXXXXXXXXXVAREVHHGHLRNNRASCKALLEVVVRPCLLCAQLHHGKSARP 60
EAQLAN VAREVHHGHLRNNRASCKALLEVVVRPCLLCAQLHHGKSARP
Sbjct: 161130 EAQLANLSSHLLRDHLRHVAREVHHGHLRNNRASCKALLEVVVRPCLLCAQLHHGKSARP 160951
Query: 61 LCDTLRSRVEARLPRRGQSHVVLLEPMSDVTIHEVLVHEQCLKLTWLARMLQVLQPKRKA 120
LCDTLRSRVEARLPRRGQSHVVLLEPMSDVTIHEVLVHEQCLKLTWLARMLQVLQPKRKA
Sbjct: 160950 LCDTLRSRVEARLPRRGQSHVVLLEPMSDVTIHEVLVHEQCLKLTWLARMLQVLQPKRKA 160771
Query: 121 SLARVLSGVNPVEHVRPRRYVDGGGRQYPARHLHKLRLDANAVLLK 166
SLARVLSGVNPVEHVRPRRYVDGGGRQYPARHLHKLRLDANAVLLK
Sbjct: 160770 SLARVLSGVNPVEHVRPRRYVDGGGRQYPARHLHKLRLDANAVLLK 160633
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.325 0.136 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 551590616
Number of extensions: 8911568
Number of successful extensions: 65909
Number of sequences better than 10: 5
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 65871
Number of HSP's successfully gapped: 5
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 15 (7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.0 bits)
S2: 78 (34.7 bits)
Query= gi|154333587|ref|NC_009303.1|:subseq(416579,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 11:[revcomp]
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
ref|XM_001562918.1| Leishmania braziliensis MHOM/BR/75/M2904 ste... 271 5e-71
emb|AM494948.1| Leishmania braziliensis chromosome 11 271 5e-71
ref|XM_001687598.1| Leishmania major strain Friedlin stearic aci... 206 2e-51
ref|XM_001464197.1| Leishmania infantum JPCM5 stearic acid desat... 205 5e-51
emb|AM502232.1| Leishmania infantum chromosome 14 205 5e-51
ref|XM_001565446.1| Leishmania braziliensis MHOM/BR/75/M2904 fat... 71 1e-10
emb|AM494961.1| Leishmania braziliensis chromosome 24 71 1e-10
ref|XM_842337.1| Trypanosoma brucei TREU927 fatty acid desaturas... 69 4e-10
gb|AC159405.1| Trypanosoma brucei chromosome 8 clone RPCI93-11J1... 69 4e-10
gb|AC159423.1| Trypanosoma brucei chromosome 8 clone RPCI93-26E1... 64 1e-08
ref|XM_797211.1| Trypanosoma cruzi strain CL Brener fatty acid d... 64 2e-08
ref|XM_001465988.1| Leishmania infantum JPCM5 fatty-acid desatur... 63 3e-08
emb|AM502242.1| Leishmania infantum chromosome 24 63 3e-08
ref|XM_001683691.1| Leishmania major fatty-acid desaturase, puta... 62 5e-08
emb|AM920435.1| Penicillium chrysogenum Wisconsin 54-1255 comple... 60 3e-07
gb|AF510861.1| Emericella nidulans stearic acid desaturase (sdeA... 57 2e-06
ref|XM_659243.1| Aspergillus nidulans FGSC A4 hypothetical prote... 55 7e-06
ref|XM_001261538.1| Neosartorya fischeri NRRL 181 stearoyl-CoA d... 55 8e-06
emb|Y10421.1|CCATCOLE1 C.curvatus strain ATCC 20509 Ole1 gene 55 8e-06
emb|X85963.1|HCOLE1DOW H.capsulatum Ole1 gene (strain DOWNS) 54 1e-05
ref|XM_001909612.1| Podospora anserina DSM 980 hypothetical prot... 53 3e-05
emb|CU638743.1| Podospora anserina genomic DNA chromosome 3, sup... 53 3e-05
ref|XM_002152086.1| Penicillium marneffei ATCC 18224 stearic aci... 53 3e-05
gb|CP000961.1| Shewanella woodyi ATCC 51908, complete genome 53 3e-05
ref|XM_001803798.1| Phaeosphaeria nodorum SN15 hypothetical pro... 52 7e-05
ref|XM_001215520.1| Aspergillus terreus NIH2624 acyl-CoA desatur... 50 2e-04
gb|AY576801.2| Hortaea werneckii putative delta-9 desaturase pro... 50 2e-04
ref|XM_001273427.1| Aspergillus clavatus NRRL 1 stearoyl-CoA des... 50 3e-04
ref|XM_001840393.1| Coprinopsis cinerea okayama7#130 hypothetica... 50 4e-04
gb|BT065846.1| Zea mays full-length cDNA clone ZM_BFc0136L10 mRN... 49 4e-04
ref|XM_001817469.1| Aspergillus oryzae RIB40 hypothetical protei... 49 4e-04
dbj|AP007151.1| Aspergillus oryzae RIB40 genomic DNA, SC005 49 4e-04
dbj|AB110447.1| Lentinula edodes Le-FAD1 mRNA for delta 9-fatty ... 49 5e-04
gb|DQ901954.2| Aureobasidium pullulans putative delta-9 desatura... 49 5e-04
emb|Y10422.1|CCCBSOLE1 C.curvatus strain CBS 570 Ole1 gene 49 7e-04
ref|XM_743825.1| Aspergillus fumigatus Af293 stearic acid desatu... 49 7e-04
dbj|AK108952.1| Oryza sativa Japonica Group cDNA clone:002-153-C... 49 8e-04
ref|XM_001941493.1| Pyrenophora tritici-repentis Pt-1C-BFP acyl-... 48 8e-04
emb|BX842654.1| Bdellovibrio bacteriovorus complete genome, stra... 48 0.001
ref|XM_767859.1| Cryptococcus neoformans var. neoformans B-3501A... 48 0.001
ref|XM_567496.1| Cryptococcus neoformans var. neoformans JEC21 s... 48 0.001
ref|XM_001391245.1| Aspergillus niger CBS 513.88 hypothetical pr... 48 0.001
emb|AM270121.1| Aspergillus niger contig An07c0030, complete genome 48 0.001
emb|CR378677.1| Photobacterium profundum SS9 chromosome 2; segme... 48 0.001
ref|XM_752009.1| Ustilago maydis 521 hypothetical protein (UM009... 47 0.002
dbj|AP007159.1| Aspergillus oryzae RIB40 genomic DNA, SC026 46 0.004
gb|CP000388.1| Pseudoalteromonas atlantica T6c, complete genome 46 0.004
gb|EU857727.1| Hortaea werneckii delta-9 desaturase isoenzyme B ... 46 0.005
emb|AJ278339.1|MAL278339 Mortierella alpina scd3 gene for putati... 46 0.005
ref|XM_001936590.1| Pyrenophora tritici-repentis Pt-1C-BFP acyl-... 46 0.005
dbj|AK119943.1| Oryza sativa Japonica Group cDNA clone:002-184-B... 45 0.006
dbj|BA000038.2| Vibrio vulnificus YJ016 DNA, chromosome II, comp... 45 0.007
emb|AM411538.1| Mortierella alpina partial mRNA for delta9 fatty... 45 0.008
dbj|AB015612.1| Mortierella alpina gene for delta-9 fatty acid d... 45 0.008
dbj|AB015611.1| Mortierella alpina mRNA for delta-9 fatty acid d... 45 0.008
dbj|AB196774.1| Mortierella alpina gene for omega9 fatty acid de... 45 0.009
ref|XM_001909169.1| Podospora anserina DSM 980 hypothetical prot... 45 0.010
gb|CP000302.1| Shewanella denitrificans OS217, complete genome 44 0.012
ref|XM_501496.1| Yarrowia lipolytica YALI0C05951p (YALI0C05951g)... 44 0.012
emb|CR382129.1| Yarrowia lipolytica strain CLIB122 chromosome C ... 44 0.012
gb|CP000851.1| Shewanella pealeana ATCC 700345, complete genome 44 0.012
emb|FM954973.2| Vibrio splendidus LGP32 chromosome 2 44 0.014
gb|CP000644.1| Aeromonas salmonicida subsp. salmonicida A449, co... 44 0.014
dbj|AB226115.1| Aspergillus oryzae cDNA, contig sequence: AoEST2972 44 0.017
dbj|AP006495.2| Cyanidioschyzon merolae DNA, chromosome 13, comp... 44 0.026
dbj|AB006677.1| Cyanidioschyzon merolae CmFAD9 gene for delta-9 ... 44 0.026
ref|XM_001528022.1| Lodderomyces elongisporus NRRL YB-4239 acyl-... 43 0.026
gb|CP000606.1| Shewanella loihica PV-4, complete genome 43 0.028
emb|Y18553.1|MAL18553 Mortierella alpina ole1 gene for stearoyl-... 43 0.029
gb|AE016796.1| Vibrio vulnificus CMCP6 chromosome II, complete s... 43 0.039
dbj|AP007174.1| Aspergillus oryzae RIB40 genomic DNA, SC103 42 0.044
gb|CP000444.1| Shewanella sp. MR-7, complete genome 42 0.046
ref|XM_001547712.1| Botryotinia fuckeliana B05.10 acyl-CoA desat... 42 0.049
emb|CR382138.2| Debaryomyces hansenii strain CBS767 chromosome F... 42 0.053
ref|XM_460535.1| Debaryomyces hansenii CBS767 hypothetical prote... 42 0.053
gb|AF085500.2|AF085500 Mortierella alpina delta nine desaturase ... 42 0.063
ref|XM_001822481.1| Aspergillus oryzae RIB40 hypothetical protei... 42 0.065
dbj|AB226022.1| Aspergillus oryzae cDNA, contig sequence: AoEST2878 42 0.065
dbj|AP007162.1| Aspergillus oryzae RIB40 genomic DNA, SC102 42 0.065
gb|EU017503.1| Pichia pastoris delta 9-fatty acid desaturase mRN... 42 0.091
gb|CP000469.1| Shewanella sp. ANA-3, complete genome 41 0.13
ref|XM_001884806.1| Laccaria bicolor S238N-H82 delta 9-fatty aci... 41 0.14
ref|XM_386360.1| Gibberella zeae PH-1 hypothetical protein parti... 41 0.15
gb|CP000753.1| Shewanella baltica OS185, complete genome 41 0.17
emb|CR954246.1| Pseudoalteromonas haloplanktis str. TAC125 chrom... 40 0.20
dbj|AK107670.1| Oryza sativa Japonica Group cDNA clone:002-131-H... 40 0.20
ref|XM_001822150.1| Aspergillus oryzae RIB40 hypothetical protei... 40 0.21
gb|AE014299.1| Shewanella oneidensis MR-1, complete genome 40 0.23
ref|XM_452447.1| Kluyveromyces lactis NRRL Y-1140, KLLA0C05566g ... 40 0.24
emb|CR382123.1| Kluyveromyces lactis strain NRRL Y-1140 chromoso... 40 0.24
ref|XM_001834887.1| Coprinopsis cinerea okayama7#130 hypothetica... 40 0.31
emb|X85962.1|HCOLE1G21 H.capsulatum Ole1 gene (strain G217B) 40 0.34
dbj|AB071696.1| Saccharomyces kluyveri Sk-SDS23 gene and Sk-OLE1... 40 0.37
emb|Y18554.1|MAL18554 Mortierella alpina ole2 gene for stearoyl-... 39 0.39
gb|CP000507.1| Shewanella amazonensis SB2B, complete genome 39 0.41
ref|XM_001805791.1| Phaeosphaeria nodorum SN15 hypothetical pro... 39 0.45
ref|XM_363864.1| Magnaporthe grisea 70-15 conserved hypothetical... 39 0.50
gb|AE017340.1| Idiomarina loihiensis L2TR, complete genome 39 0.51
emb|CU468230.2| Acinetobacter baumannii str. SDF, complete genome 39 0.58
gb|CP000521.1| Acinetobacter baumannii ATCC 17978, complete genome 39 0.58
ref|XM_001826811.1| Aspergillus oryzae RIB40 hypothetical protei... 39 0.60
gb|AY693010.1| Saccharomyces cerevisiae clone FLH112791.01X YGL0... 39 0.60
emb|Z72577.1|SCYGL055W S.cerevisiae chromosome VII reading frame... 39 0.60
gb|J05676.1|YSCOLE1 Saccharomyces cerevisiae delta-9 fatty acid ... 39 0.60
ref|XM_956731.2| Neurospora crassa OR74A acyl-CoA desaturase 1 p... 39 0.64
emb|CR543861.1| Acinetobacter sp. ADP1 complete genome 39 0.71
emb|CR380955.2| Candida glabrata strain CBS138 chromosome I comp... 39 0.73
ref|XM_447271.1| Candida glabrata CBS138 hypothetical protein (C... 39 0.73
gb|CP000510.1| Psychromonas ingrahamii 37, complete genome 39 0.74
ref|XM_001879546.1| Laccaria bicolor S238N-H82 delta 9-fatty aci... 39 0.78
ref|XM_001224011.1| Chaetomium globosum CBS 148.51 hypothetical ... 39 0.78
gb|CP001133.1| Vibrio fischeri MJ11 chromosome II, complete sequ... 38 0.86
gb|AE016814.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10... 38 0.94
ref|NM_207817.1| Ashbya gossypii ATCC 10895 hypothetical protein... 38 0.94
ref|NM_208049.1| Ashbya gossypii ATCC 10895 hypothetical protein... 38 0.98
dbj|AB195980.1| Mortierella alpina gene for omega9 fatty acid de... 37 1.5
gb|CP001172.1| Acinetobacter baumannii AB307-0294, complete genome 37 1.6
gb|CP001182.1| Acinetobacter baumannii AB0057, complete genome 37 1.6
emb|CU459141.1| Acinetobacter baumannii str. AYE, complete genome 37 1.6
gb|CP000790.1| Vibrio harveyi ATCC BAA-1116 chromosome II, compl... 37 1.6
dbj|BA000032.2| Vibrio parahaemolyticus RIMD 2210633 DNA, chromo... 37 1.6
dbj|AB024576.1| Pichia angusta H-OLE1 gene for delta9-fatty acid... 37 1.7
gb|CP000446.1| Shewanella sp. MR-4, complete genome 37 1.7
gb|CP000863.1| Acinetobacter baumannii ACICU, complete genome 37 1.9
ref|XM_001383175.1| Pichia stipitis CBS 6054 stearoyl-CoA desatu... 37 2.0
gb|CP000496.1| Pichia stipitis CBS 6054 chromosome 2, complete s... 37 2.0
gb|AE017350.1| Cryptococcus neoformans var. neoformans JEC21 chr... 37 2.3
gb|CP001252.1| Shewanella baltica OS223, complete genome 37 2.4
gb|CP000891.1| Shewanella baltica OS195, complete genome 37 2.4
gb|CP000563.1| Shewanella baltica OS155, complete genome 37 2.6
emb|AL111134.1|CNS0193B Botrytis cinerea strain T4 cDNA library 36 4.1
dbj|D83185.1| Pichia angusta DNA for delta 9-fatty acid desatura... 36 4.7
gb|CP000021.2| Vibrio fischeri ES114 chromosome II, complete seq... 36 4.7
gb|AC232887.1| Oryza officinalis clone OO__Ba0042E14, complete s... 36 5.3
gb|AC217194.1| Oryza minuta clone OM__Ba0116F20, complete sequence 36 5.3
gb|CP000713.1| Psychrobacter sp. PRwf-1, complete genome 35 5.9
gb|CP000472.1| Shewanella piezotolerans WP3, complete genome 35 8.6
gb|CP000931.1| Shewanella halifaxensis HAW-EB4, complete genome 35 8.6
gb|CP000786.1| Leptospira biflexa serovar Patoc strain 'Patoc 1 ... 35 9.2
gb|CP000777.1| Leptospira biflexa serovar Patoc strain 'Patoc 1 ... 35 9.2
>ref|XM_001562918.1| Leishmania braziliensis MHOM/BR/75/M2904 stearic acid desaturase
(LbrM11_V2.0330) partial mRNA
Length = 1383
Score = 271 bits (693), Expect = 5e-71, Method: Composition-based stats.
Identities = 163/166 (98%), Positives = 163/166 (98%)
Frame = -2
Query: 1 VAGTSSRLTSFAASTNPRSCVRTACIAAARSITARGARCKLSQKPRKLQRKMYHFVTSMW 60
VAGTSSRLTSFAASTNPRSCVRTACIAAARSITARGARCKLSQKPRKLQRKMYHFVTSMW
Sbjct: 1022 VAGTSSRLTSFAASTNPRSCVRTACIAAARSITARGARCKLSQKPRKLQRKMYHFVTSMW 843
Query: 61 CHRUPLR*SFGNWWUKLW*PSPRLMIAKRVESCGVKSSEYGRVAPKKRVCARLLIKKENW 120
CHR PLR*SFGNWW KLW*PSPRLMIAKRVESCGVKSSEYGRVAPKKRVCARLLIKKENW
Sbjct: 842 CHR*PLR*SFGNWW*KLW*PSPRLMIAKRVESCGVKSSEYGRVAPKKRVCARLLIKKENW 663
Query: 121 CTRKILSHTTQKNAPNHSPVVAPATTRGIRIPVMVAITAKYLRUNS 166
CTRKILSHTTQKNAPNHSPVVAPATTRGIRIPVMVAITAKYLR NS
Sbjct: 662 CTRKILSHTTQKNAPNHSPVVAPATTRGIRIPVMVAITAKYLR*NS 525
>emb|AM494948.1| Leishmania braziliensis chromosome 11
Length = 558624
Score = 271 bits (693), Expect = 5e-71, Method: Composition-based stats.
Identities = 163/166 (98%), Positives = 163/166 (98%)
Frame = -3
Query: 1 VAGTSSRLTSFAASTNPRSCVRTACIAAARSITARGARCKLSQKPRKLQRKMYHFVTSMW 60
VAGTSSRLTSFAASTNPRSCVRTACIAAARSITARGARCKLSQKPRKLQRKMYHFVTSMW
Sbjct: 142045 VAGTSSRLTSFAASTNPRSCVRTACIAAARSITARGARCKLSQKPRKLQRKMYHFVTSMW 141866
Query: 61 CHRUPLR*SFGNWWUKLW*PSPRLMIAKRVESCGVKSSEYGRVAPKKRVCARLLIKKENW 120
CHR PLR*SFGNWW KLW*PSPRLMIAKRVESCGVKSSEYGRVAPKKRVCARLLIKKENW
Sbjct: 141865 CHR*PLR*SFGNWW*KLW*PSPRLMIAKRVESCGVKSSEYGRVAPKKRVCARLLIKKENW 141686
Query: 121 CTRKILSHTTQKNAPNHSPVVAPATTRGIRIPVMVAITAKYLRUNS 166
CTRKILSHTTQKNAPNHSPVVAPATTRGIRIPVMVAITAKYLR NS
Sbjct: 141685 CTRKILSHTTQKNAPNHSPVVAPATTRGIRIPVMVAITAKYLR*NS 141548
>ref|XM_001687598.1| Leishmania major strain Friedlin stearic acid desaturase, putative
(LmjF14.0510) partial mRNA
Length = 1404
Score = 206 bits (524), Expect = 2e-51, Method: Composition-based stats.
Identities = 129/165 (78%), Positives = 135/165 (81%)
Frame = -2
Query: 2 AGTSSRLTSFAASTNPRSCVRTACIAAARSITARGARCKLSQKPRKLQRKMYHFVTSMWC 61
AGTSS T AS + R C+ TAC AAARS T RGARC+LSQKPRKL MYHFV SMWC
Sbjct: 1019 AGTSSCFTFSTAS*SLRPCMHTACAAAARSTTVRGARCRLSQKPRKLHINMYHFVISMWC 840
Query: 62 HRUPLR*SFGNWWUKLW*PSPRLMIAKRVESCGVKSSEYGRVAPKKRVCARLLIKKENWC 121
HR PLR*SFGNWW LW*PSPR MIAK ESCGV S YGRVAPK+ VCARLL+KKENWC
Sbjct: 839 HR*PLR*SFGNWWW*LW*PSPRFMIAKTTESCGVLLSAYGRVAPKRSVCARLLMKKENWC 660
Query: 122 TRKILSHTTQKNAPNHSPVVAPATTRGIRIPVMVAITAKYLRUNS 166
TRKILSHTTQKNAP HSPVVAPAT RGIRIPVMVA+ AKYLR NS
Sbjct: 659 TRKILSHTTQKNAPAHSPVVAPATMRGIRIPVMVAMAAKYLRWNS 525
>ref|XM_001464197.1| Leishmania infantum JPCM5 stearic acid desaturase, putative
(LinJ14.0520) partial mRNA
Length = 1404
Score = 205 bits (521), Expect = 5e-51, Method: Composition-based stats.
Identities = 130/165 (78%), Positives = 134/165 (81%)
Frame = -2
Query: 2 AGTSSRLTSFAASTNPRSCVRTACIAAARSITARGARCKLSQKPRKLQRKMYHFVTSMWC 61
AGTSS T AS + R CV TAC AAARS T RGARCKLSQKPRKL MYHFV SMW
Sbjct: 1019 AGTSSCFTFSTAS*SLRPCVHTACTAAARSTTVRGARCKLSQKPRKLHINMYHFVISMWY 840
Query: 62 HRUPLR*SFGNWWUKLW*PSPRLMIAKRVESCGVKSSEYGRVAPKKRVCARLLIKKENWC 121
HR PLR*SFGNWW LW*PSPR MIAK ESCGV SS YG VAPK+ VCARLL+KKENWC
Sbjct: 839 HR*PLR*SFGNWWW*LW*PSPRFMIAKTTESCGVLSSAYGLVAPKRSVCARLLMKKENWC 660
Query: 122 TRKILSHTTQKNAPNHSPVVAPATTRGIRIPVMVAITAKYLRUNS 166
TRKILSHTTQKNAP HSPVVAPAT RGIRIPVMVA+ AKYLR NS
Sbjct: 659 TRKILSHTTQKNAPAHSPVVAPATMRGIRIPVMVAMAAKYLRWNS 525
>emb|AM502232.1| Leishmania infantum chromosome 14
Length = 646237
Score = 205 bits (521), Expect = 5e-51, Method: Composition-based stats.
Identities = 130/165 (78%), Positives = 134/165 (81%)
Frame = +1
Query: 2 AGTSSRLTSFAASTNPRSCVRTACIAAARSITARGARCKLSQKPRKLQRKMYHFVTSMWC 61
AGTSS T AS + R CV TAC AAARS T RGARCKLSQKPRKL MYHFV SMW
Sbjct: 190852 AGTSSCFTFSTAS*SLRPCVHTACTAAARSTTVRGARCKLSQKPRKLHINMYHFVISMWY 191031
Query: 62 HRUPLR*SFGNWWUKLW*PSPRLMIAKRVESCGVKSSEYGRVAPKKRVCARLLIKKENWC 121
HR PLR*SFGNWW LW*PSPR MIAK ESCGV SS YG VAPK+ VCARLL+KKENWC
Sbjct: 191032 HR*PLR*SFGNWWW*LW*PSPRFMIAKTTESCGVLSSAYGLVAPKRSVCARLLMKKENWC 191211
Query: 122 TRKILSHTTQKNAPNHSPVVAPATTRGIRIPVMVAITAKYLRUNS 166
TRKILSHTTQKNAP HSPVVAPAT RGIRIPVMVA+ AKYLR NS
Sbjct: 191212 TRKILSHTTQKNAPAHSPVVAPATMRGIRIPVMVAMAAKYLRWNS 191346
>ref|XM_001565446.1| Leishmania braziliensis MHOM/BR/75/M2904 fatty-acid desaturase,
putative (LbrM24_V2.2330) partial mRNA
Length = 1293
Score = 70.9 bits (172), Expect = 1e-10, Method: Composition-based stats.
Identities = 56/130 (43%), Positives = 68/130 (52%)
Frame = -2
Query: 31 SITARGARCKLSQKPRKLQRKMYHFVTSMWCHRUPLR*SFGNWWUKLW*PSPRLMIAKRV 90
S+T+ G R + P +M H V S W H PLR*S+ N W KLW*PSP++ A
Sbjct: 905 SMTSFGVRTRFLAPPTNEAARMIHLVGS*WYHLMPLR*SWANSWWKLW*PSPKVKSAHTN 726
Query: 91 ESCGVKSSEYGRVAPKKRVCARLLIKKENWCTRKILSHTTQKNAPNHSPVVAPATTRGIR 150
ESC SE +APK+ V ARLLIKK W T I + K P+ SP P T G
Sbjct: 725 ESCDEWRSE*FCIAPKRLV*ARLLIKKVQWWTNTIFARAA*KYPPSQSPQPRPQTIVGRM 546
Query: 151 IPVMVAITAK 160
P +AI K
Sbjct: 545 TPESIAILKK 516
>emb|AM494961.1| Leishmania braziliensis chromosome 24
Length = 847824
Score = 70.9 bits (172), Expect = 1e-10, Method: Composition-based stats.
Identities = 56/130 (43%), Positives = 68/130 (52%)
Frame = +2
Query: 31 SITARGARCKLSQKPRKLQRKMYHFVTSMWCHRUPLR*SFGNWWUKLW*PSPRLMIAKRV 90
S+T+ G R + P +M H V S W H PLR*S+ N W KLW*PSP++ A
Sbjct: 794675 SMTSFGVRTRFLAPPTNEAARMIHLVGS*WYHLMPLR*SWANSWWKLW*PSPKVKSAHTN 794854
Query: 91 ESCGVKSSEYGRVAPKKRVCARLLIKKENWCTRKILSHTTQKNAPNHSPVVAPATTRGIR 150
ESC SE +APK+ V ARLLIKK W T I + K P+ SP P T G
Sbjct: 794855 ESCDEWRSE*FCIAPKRLV*ARLLIKKVQWWTNTIFARAA*KYPPSQSPQPRPQTIVGRM 795034
Query: 151 IPVMVAITAK 160
P +AI K
Sbjct: 795035 TPESIAILKK 795064
>ref|XM_842337.1| Trypanosoma brucei TREU927 fatty acid desaturase, putative
(Tb927.8.6000) partial mRNA
Length = 1296
Score = 69.3 bits (168), Expect = 4e-10, Method: Composition-based stats.
Identities = 55/129 (42%), Positives = 68/129 (52%)
Frame = -2
Query: 32 ITARGARCKLSQKPRKLQRKMYHFVTSMWCHRUPLR*SFGNWWUKLW*PSPRLMIAKRVE 91
I + G R +P +M HFV S H PLR*S+ N W KL PSP++ A+ E
Sbjct: 914 IISFGVRTSRLARPTNSHSRMTHFVGS**YHLIPLR*SWLNSW*KL*YPSPKVRRAQTTE 735
Query: 92 SCGVKSSEYGRVAPKKRVCARLLIKKENWCTRKILSHTTQKNAPNHSPVVAPATTRGIRI 151
SCGV SEY APK+ V ARLL+KK CT I K P+ SP P T+ G +
Sbjct: 734 SCGVWRSEYVCTAPKRSV*ARLLMKKVQ*CTNTIFRIAA*K*PPSQSPHPRPQTSVGRIM 555
Query: 152 PVMVAITAK 160
P +AI K
Sbjct: 554 PDAMAILKK 528
>gb|AC159405.1| Trypanosoma brucei chromosome 8 clone RPCI93-11J15, complete sequence
Length = 164873
Score = 69.3 bits (168), Expect = 4e-10, Method: Composition-based stats.
Identities = 55/129 (42%), Positives = 68/129 (52%)
Frame = +2
Query: 32 ITARGARCKLSQKPRKLQRKMYHFVTSMWCHRUPLR*SFGNWWUKLW*PSPRLMIAKRVE 91
I + G R +P +M HFV S H PLR*S+ N W KL PSP++ A+ E
Sbjct: 114332 IISFGVRTSRLARPTNSHSRMTHFVGS**YHLIPLR*SWLNSW*KL*YPSPKVRRAQTTE 114511
Query: 92 SCGVKSSEYGRVAPKKRVCARLLIKKENWCTRKILSHTTQKNAPNHSPVVAPATTRGIRI 151
SCGV SEY APK+ V ARLL+KK CT I K P+ SP P T+ G +
Sbjct: 114512 SCGVWRSEYVCTAPKRSV*ARLLMKKVQ*CTNTIFRIAA*K*PPSQSPHPRPQTSVGRIM 114691
Query: 152 PVMVAITAK 160
P +AI K
Sbjct: 114692 PDAMAILKK 114718
>gb|AC159423.1| Trypanosoma brucei chromosome 8 clone RPCI93-26E13, complete sequence
Length = 147087
Score = 64.3 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 54/129 (41%), Positives = 67/129 (51%)
Frame = -2
Query: 32 ITARGARCKLSQKPRKLQRKMYHFVTSMWCHRUPLR*SFGNWWUKLW*PSPRLMIAKRVE 91
I + G R +P +M HFV S H PLR*S+ N KL PSP++ A+ E
Sbjct: 139088 IISFGVRTSRLARPTNSHSRMTHFVGS**YHLIPLR*SWLNS**KL*YPSPKVRRAQTTE 138909
Query: 92 SCGVKSSEYGRVAPKKRVCARLLIKKENWCTRKILSHTTQKNAPNHSPVVAPATTRGIRI 151
SCGV SEY APK+ V ARLL+KK CT I K P+ SP P T+ G +
Sbjct: 138908 SCGVWRSEYVCTAPKRSV*ARLLMKKVQ*CTNTIFRIAA*K*PPSQSPHPRPQTSVGRIM 138729
Query: 152 PVMVAITAK 160
P +AI K
Sbjct: 138728 PDAMAILKK 138702
>ref|XM_797211.1| Trypanosoma cruzi strain CL Brener fatty acid desaturase partial mRNA
Length = 1302
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 64/163 (39%), Positives = 79/163 (48%), Gaps = 3/163 (1%)
Frame = -2
Query: 1 VAGTSSRLTSFAASTNPRSCVRTAC---IAAARSITARGARCKLSQKPRKLQRKMYHFVT 57
V G+SS F+ S+ C+RT SIT+ G R + R+M H V
Sbjct: 1010 VVGSSSSPNRFSRSS---ICLRTPLYWRFFTFLSITSLGVRMRCEAILSHSHRRMVHLVG 840
Query: 58 SMWCHRUPLR*SFGNWWUKLW*PSPRLMIAKRVESCGVKSSEYGRVAPKKRVCARLLIKK 117
S H PLR*S N W KLW PSP + A+ +ES V SE APKK V ARLL+KK
Sbjct: 839 SK*YHLMPLR*SCANSW*KLWYPSPNVKSAQTMES*EVLRSE*FCTAPKKLVWARLLMKK 660
Query: 118 ENWCTRKILSHTTQKNAPNHSPVVAPATTRGIRIPVMVAITAK 160
WCT + K P+ SP P + G IP +AI K
Sbjct: 659 VQWCTNTTFASPA*KYPPSQSPQPRPQISVGRIIPDNIAILKK 531
>ref|XM_001465988.1| Leishmania infantum JPCM5 fatty-acid desaturase (LinJ24.1640)
partial mRNA
Length = 1296
Score = 63.2 bits (152), Expect = 3e-08, Method: Composition-based stats.
Identities = 56/135 (41%), Positives = 68/135 (50%)
Frame = -2
Query: 31 SITARGARCKLSQKPRKLQRKMYHFVTSMWCHRUPLR*SFGNWWUKLW*PSPRLMIAKRV 90
S+T+ G R + PR +M H V S W H PLR*S+ N W KL *PSP++ A
Sbjct: 908 SMTSFGVRTRFLAPPRNDTARMIHLVGS*WYHLIPLR*SWANSWWKL**PSPKVNSAHTK 729
Query: 91 ESCGVKSSEYGRVAPKKRVCARLLIKKENWCTRKILSHTTQKNAPNHSPVVAPATTRGIR 150
ESC SE A K+ V ARLL+KK W T I + K P+ SP P T G
Sbjct: 728 ESCDEWRSE*FCTAAKRFV*ARLLMKKVQW*TNTIFARAA*KYPPSQSPQPRPQITVGRM 549
Query: 151 IPVMVAITAKYLRUN 165
P +AI K L N
Sbjct: 548 TPESIAILKKCLCWN 504
>emb|AM502242.1| Leishmania infantum chromosome 24
Length = 608846
Score = 63.2 bits (152), Expect = 3e-08, Method: Composition-based stats.
Identities = 56/135 (41%), Positives = 68/135 (50%)
Frame = +2
Query: 31 SITARGARCKLSQKPRKLQRKMYHFVTSMWCHRUPLR*SFGNWWUKLW*PSPRLMIAKRV 90
S+T+ G R + PR +M H V S W H PLR*S+ N W KL *PSP++ A
Sbjct: 584699 SMTSFGVRTRFLAPPRNDTARMIHLVGS*WYHLIPLR*SWANSWWKL**PSPKVNSAHTK 584878
Query: 91 ESCGVKSSEYGRVAPKKRVCARLLIKKENWCTRKILSHTTQKNAPNHSPVVAPATTRGIR 150
ESC SE A K+ V ARLL+KK W T I + K P+ SP P T G
Sbjct: 584879 ESCDEWRSE*FCTAAKRFV*ARLLMKKVQW*TNTIFARAA*KYPPSQSPQPRPQITVGRM 585058
Query: 151 IPVMVAITAKYLRUN 165
P +AI K L N
Sbjct: 585059 TPESIAILKKCLCWN 585103
>ref|XM_001683691.1| Leishmania major fatty-acid desaturase, putative (LmjF24.2250)
partial mRNA
Length = 1356
Score = 62.4 bits (150), Expect = 5e-08, Method: Composition-based stats.
Identities = 56/135 (41%), Positives = 68/135 (50%)
Frame = -2
Query: 31 SITARGARCKLSQKPRKLQRKMYHFVTSMWCHRUPLR*SFGNWWUKLW*PSPRLMIAKRV 90
S+T+ G R + PR +M H V S W H PLR*S+ N W KL *PSP++ A
Sbjct: 968 SMTSFGVRTRFLAPPRNDTARMIHLVGS*WYHLIPLR*SWANSWWKL**PSPKVNNAHTK 789
Query: 91 ESCGVKSSEYGRVAPKKRVCARLLIKKENWCTRKILSHTTQKNAPNHSPVVAPATTRGIR 150
ESC SE A K+ V ARLL+KK W T I + K P+ SP P T G
Sbjct: 788 ESCDEWRSE*FCTAAKRFV*ARLLMKKVQW*TNTIFARAA*KYPPSQSPQPRPQITVGRM 609
Query: 151 IPVMVAITAKYLRUN 165
P +AI K L N
Sbjct: 608 TPESIAILKKCLCWN 564
>emb|AM920435.1| Penicillium chrysogenum Wisconsin 54-1255 complete genome, contig Pc00c20
Length = 3652229
Score = 59.7 bits (143), Expect = 3e-07, Method: Composition-based stats.
Identities = 46/112 (41%), Positives = 57/112 (50%)
Frame = +1
Query: 44 KPRKLQRKMYHFVTSMWCHRUPLR*SFGNWWUKLW*PSPRLMIAKRVESCGVKSSEYGRV 103
+P LQ +M H V S WCH LR*S GN W KLW*PSPR+ A + S G S G
Sbjct: 317005 RPSCLQVQMVHLVGSYWCHSMALR*SEGNSWWKLW*PSPRVTRAVMMWSRGELRSSKGWS 317184
Query: 104 APKKRVCARLLIKKENWCTRKILSHTTQKNAPNHSPVVAPATTRGIRIPVMV 155
+ A L +K CT+KI N P SP PAT+ G P+++
Sbjct: 317185 PSQ---WASELTQKVACCTKKIRRIPAYTNPPYQSPQPRPATSIGTIRPIVI 317331
>gb|AF510861.1| Emericella nidulans stearic acid desaturase (sdeA) gene, complete cds
Length = 2219
Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 46/111 (41%), Positives = 57/111 (51%)
Frame = -2
Query: 44 KPRKLQRKMYHFVTSMWCHRUPLR*SFGNWWUKLW*PSPRLMIAKRVESCGVKSSEYGRV 103
+P Q +M H V S WCH LR*S GN W KLW*PSPR+ A S G S G
Sbjct: 1531 RPSCFQAQMDHLVGSYWCHSMALR*SEGNSWWKLW*PSPRVTRAVITWSRGELRSSKGW- 1355
Query: 104 APKKRVCARLLIKKENWCTRKILSHTTQKNAPNHSPVVAPATTRGIRIPVM 154
+P +R A+ L +K T+KI PN SP PAT+ G P++
Sbjct: 1354 SPSQR--AKELTQKVACWTKKIRRMPAYTKPPNQSPHPRPATSIGTANPIV 1208
>ref|XM_659243.1| Aspergillus nidulans FGSC A4 hypothetical protein AN6731.2 partial
mRNA
Length = 1368
Score = 55.1 bits (131), Expect = 7e-06, Method: Composition-based stats.
Identities = 44/111 (39%), Positives = 54/111 (48%)
Frame = -2
Query: 44 KPRKLQRKMYHFVTSMWCHRUPLR*SFGNWWUKLW*PSPRLMIAKRVESCGVKSSEYGRV 103
+P Q +M H V S WCH LR*S GN W KLW*PSPR+ A S G S G
Sbjct: 869 RPSCFQAQMDHLVGSYWCHSMALR*SEGNSWWKLW*PSPRVTRAVITWSRGELRSSKGWS 690
Query: 104 APKKRVCARLLIKKENWCTRKILSHTTQKNAPNHSPVVAPATTRGIRIPVM 154
+ A+ L +K T+KI PN SP PAT+ G P++
Sbjct: 689 PSQ---WAKELTQKVACWTKKIRRMPAYTKPPNQSPHPRPATSIGTANPIV 546
>ref|XM_001261538.1| Neosartorya fischeri NRRL 181 stearoyl-CoA desaturase (NFIA_027160)
partial mRNA
Length = 1371
Score = 55.1 bits (131), Expect = 8e-06, Method: Composition-based stats.
Identities = 45/111 (40%), Positives = 54/111 (48%)
Frame = -2
Query: 44 KPRKLQRKMYHFVTSMWCHRUPLR*SFGNWWUKLW*PSPRLMIAKRVESCGVKSSEYGRV 103
+P Q +M H V S WCH LR*S GN W KLW*PSPR+ A S G S G
Sbjct: 872 RPSCFQIQMVHLVGSYWCHSMALR*SEGNSWWKLW*PSPRVTRAVIT*SLGELRSSKGWS 693
Query: 104 APKKRVCARLLIKKENWCTRKILSHTTQKNAPNHSPVVAPATTRGIRIPVM 154
+ AR L +K T+KI PN SP PAT+ G P++
Sbjct: 692 PSQ---WARELTQKVAC*TKKIRRIPA*MKPPNQSPQPRPATSMGTTSPII 549
>emb|Y10421.1|CCATCOLE1 C.curvatus strain ATCC 20509 Ole1 gene
Length = 2059
Score = 55.1 bits (131), Expect = 8e-06, Method: Composition-based stats.
Identities = 45/122 (36%), Positives = 58/122 (47%)
Frame = -2
Query: 32 ITARGARCKLSQKPRKLQRKMYHFVTSMWCHRUPLR*SFGNWWUKLW*PSPRLMIAKRVE 91
I+ G + +P +M HFV S W H LR S GNWW KLW*PSP + A
Sbjct: 1200 ISLSGNFLRCEARPS*AMVQMNHFVGSYWYHLMALRKSMGNWWWKLW*PSPTVTSAVIKW 1021
Query: 92 SCGVKSSEYGRVAPKKRVCARLLIKKENWCTRKILSHTTQKNAPNHSPVVAPATTRGIRI 151
S GV G V+P + A L +K W T+ + +K P+ SP PAT G
Sbjct: 1020 SLGVCLLSKG-VSPSQ--WASELTQKVEWWTKTRRAAPAKKRPPHQSPQPRPATRVGKAR 850
Query: 152 PV 153
P+
Sbjct: 849 PM 844
>emb|X85963.1|HCOLE1DOW H.capsulatum Ole1 gene (strain DOWNS)
Length = 1590
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 44/110 (40%), Positives = 54/110 (49%)
Frame = -1
Query: 44 KPRKLQRKMYHFVTSMWCHRUPLR*SFGNWWUKLW*PSPRLMIAKRVESCGVKSSEYGRV 103
+P Q ++ H V S WCH LR*S GN W KLW*PSPR+ A + S G S G
Sbjct: 1020 RPSCFQIQIVHLVGSYWCHSMALR*SEGNSWWKLW*PSPRVTRAVTMWSRGELRSSKGWS 841
Query: 104 APKKRVCARLLIKKENWCTRKILSHTTQKNAPNHSPVVAPATTRGIRIPV 153
+ AR L +K T+KI PN SP P T+ G IP+
Sbjct: 840 PSQ---WARELTQKVACWTKKIRRMPA*MKPPNQSPQPRPLTSMGKTIPM 700
>ref|XM_001909612.1| Podospora anserina DSM 980 hypothetical protein (PODANSg6683)
partial mRNA
Length = 1314
Score = 53.1 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 47/118 (39%), Positives = 56/118 (47%)
Frame = -2
Query: 32 ITARGARCKLSQKPRKLQRKMYHFVTSMWCHRUPLR*SFGNWWUKLW*PSPRLMIAKRVE 91
I+ G C P + R M HFV S H PLR*S GNWW KLW PSP + +A +
Sbjct: 914 ISFWGKVCSCVDNPSRELR*MNHFVGSY*YHLIPLR*STGNWWWKLWYPSPAVTMAVKKW 735
Query: 92 SCGVKSSEYGRVAPKKRVCARLLIKKENWCTRKILSHTTQKNAPNHSPVVAPATTRGI 149
GV S G +PK V AR L+ T LS + P SP PAT G+
Sbjct: 734 LRGVCLSSNG-ASPK--VWARELMHMMLCWTIVSLSMAA*QMPPAQSPQKYPATAAGM 570
>emb|CU638743.1| Podospora anserina genomic DNA chromosome 3, supercontig 2
Length = 3035657
Score = 53.1 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 47/118 (39%), Positives = 56/118 (47%)
Frame = +2
Query: 32 ITARGARCKLSQKPRKLQRKMYHFVTSMWCHRUPLR*SFGNWWUKLW*PSPRLMIAKRVE 91
I+ G C P + R M HFV S H PLR*S GNWW KLW PSP + +A +
Sbjct: 2303171 ISFWGKVCSCVDNPSRELR*MNHFVGSY*YHLIPLR*STGNWWWKLWYPSPAVTMAVKKW 2303350
Query: 92 SCGVKSSEYGRVAPKKRVCARLLIKKENWCTRKILSHTTQKNAPNHSPVVAPATTRGI 149
GV S G +PK V AR L+ T LS + P SP PAT G+
Sbjct: 2303351 LRGVCLSSNG-ASPK--VWARELMHMMLCWTIVSLSMAA*QMPPAQSPQKYPATAAGM 2303515
Score = 44.7 bits (104), Expect = 0.010, Method: Composition-based stats.
Identities = 31/78 (39%), Positives = 38/78 (48%)
Frame = -2
Query: 24 ACIAAARSITARGARCKLSQKPRKLQRKMYHFVTSMWCHRUPLR*SFGNWWUKLW*PSPR 83
+C + SI+ G +L +PR +M H V S H LR S GN W KLW*PSPR
Sbjct: 847387 SCWSLPFSISFWGNVLRLYARPRNFMIEMNHLVGSYCHHSIALRKSLGNSWWKLW*PSPR 847208
Query: 84 LMIAKRVESCGVKSSEYG 101
+ A S G S G
Sbjct: 847207 VTRAVMT*SLGELRSSKG 847154
>ref|XM_002152086.1| Penicillium marneffei ATCC 18224 stearic acid desaturase (SdeA),
putative, mRNA
Length = 1830
Score = 53.1 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 45/114 (39%), Positives = 54/114 (47%)
Frame = -3
Query: 44 KPRKLQRKMYHFVTSMWCHRUPLR*SFGNWWUKLW*PSPRLMIAKRVESCGVKSSEYGRV 103
+P LQ +M H V S WCH LR*S GN W KLW PSPR+M A S G S G
Sbjct: 1099 RPSCLQVQMNHLVGSYWCHSIALR*SEGNSWWKLWYPSPRVMRAVMTWSRGELRSSNGWS 920
Query: 104 APKKRVCARLLIKKENWCTRKILSHTTQKNAPNHSPVVAPATTRGIRIPVMVAI 157
+ A+ L +K T+KI P+ SP PAT G P+ I
Sbjct: 919 PSQ---WAKELTQKVACWTKKIRKMPA*TKPPHQSPQPRPATIMGKTRPMNATI 767
>gb|CP000961.1| Shewanella woodyi ATCC 51908, complete genome
Length = 5935403
Score = 53.1 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 50/127 (39%), Positives = 60/127 (47%), Gaps = 1/127 (0%)
Frame = -3
Query: 18 RSCVRTACIAA-ARSITARGARCKLSQKPRKLQRKMYHFVTSMWCHRUPLR*SFGNWWUK 76
R CVR +CI + A SI + G + P +L+ + HFV S R PLR*SF W K
Sbjct: 5690370 RFCVRLSCICSLALSIRSCGVTRRSLASPPQLKAFINHFVGSYCHQRIPLR*SFSKMWWK 5690191
Query: 77 LW*PSPRLMIAKRVESCGVKSSEYGRVAPKKRVCARLLIKKENWCTRKILSHTTQKNAPN 136
L PSP + A S V S YG + A LIKK WCT LS N N
Sbjct: 5690190 L*YPSP*VSSAITPLSLAVFLSVYGWLP---HT*ASELIKKVQWCTTTSLSSPAINNMAN 5690020
Query: 137 HSPVVAP 143
SP+ P
Sbjct: 5690019 ISPLSQP 5689999
>ref|XM_001803798.1| Phaeosphaeria nodorum SN15 hypothetical protein partial mRNA
Length = 1845
Score = 51.6 bits (122), Expect = 7e-05, Method: Composition-based stats.
Identities = 52/154 (33%), Positives = 68/154 (44%)
Frame = -3
Query: 1 VAGTSSRLTSFAASTNPRSCVRTACIAAARSITARGARCKLSQKPRKLQRKMYHFVTSMW 60
+ G+ SR T ++ S +C SI+ +L +P L +M H V S W
Sbjct: 1246 MTGSWSRGTPQSSLARFWSIFFWSCWTRPFSISLERNCLRLEARPSLLHSQMDHLVGSYW 1067
Query: 61 CHRUPLR*SFGNWWUKLW*PSPRLMIAKRVESCGVKSSEYGRVAPKKRVCARLLIKKENW 120
CH LR*S GN W KLW*PSPR+ A S G S G + A L +K
Sbjct: 1066 CHSMALR*SEGNSWWKLW*PSPRVTRAVMTWSRGELRSSKGWSPSQ---*ASELTQKVAC 896
Query: 121 CTRKILSHTTQKNAPNHSPVVAPATTRGIRIPVM 154
T+KI P SP + PAT G P++
Sbjct: 895 WTKKIRRIPA*MKPPIQSPHMRPATAEGKIKPMV 794
>ref|XM_001215520.1| Aspergillus terreus NIH2624 acyl-CoA desaturase (ATEG_06342)
partial mRNA
Length = 1356
Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 42/110 (38%), Positives = 53/110 (48%)
Frame = -2
Query: 44 KPRKLQRKMYHFVTSMWCHRUPLR*SFGNWWUKLW*PSPRLMIAKRVESCGVKSSEYGRV 103
+P Q +M H V S WCH LR*S GN W KLW PSPR+ A S G S G
Sbjct: 857 RPSCFQIQMDHLVGSYWCHSMALR*SEGNSWWKLWYPSPRVTRAVMTWSRGELRSSKGWS 678
Query: 104 APKKRVCARLLIKKENWCTRKILSHTTQKNAPNHSPVVAPATTRGIRIPV 153
+ AR L +K T+K+ P+ SP PAT+ G +P+
Sbjct: 677 PSQ---WARELTQKVACWTKKMRRIPA*TKPPHQSPQPRPATSIGTTMPM 537
>gb|AY576801.2| Hortaea werneckii putative delta-9 desaturase protein A (OLE1) gene,
complete cds
Length = 4116
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 40/105 (38%), Positives = 49/105 (46%)
Frame = -1
Query: 44 KPRKLQRKMYHFVTSMWCHRUPLR*SFGNWWUKLW*PSPRLMIAKRVESCGVKSSEYGRV 103
+P +M H V S WCH LR*S GN W KLW*PSP + A S G+ S G
Sbjct: 3222 RPSCFHAQMDHLVGSYWCHSIALR*SDGNSWWKLW*PSPSVTRAVMTWSRGLLRSSNGWS 3043
Query: 104 APKKRVCARLLIKKENWCTRKILSHTTQKNAPNHSPVVAPATTRG 148
+ CAR +K T+K+ N P SP P T +G
Sbjct: 3042 PSQ---CAREFTQKVAC*TKKMRRIPA*MNPPIQSPQPRPLTKQG 2917
>ref|XM_001273427.1| Aspergillus clavatus NRRL 1 stearoyl-CoA desaturase (ACLA_007610),
partial mRNA
Length = 1371
Score = 49.7 bits (117), Expect = 3e-04, Method: Composition-based stats.
Identities = 43/110 (39%), Positives = 53/110 (48%)
Frame = -2
Query: 44 KPRKLQRKMYHFVTSMWCHRUPLR*SFGNWWUKLW*PSPRLMIAKRVESCGVKSSEYGRV 103
+P Q +M H V S WCH LR*S GN W KLW*PSPR+ A S G S G
Sbjct: 872 RPSCFQIQMDHLVGSYWCHSMALR*SEGNSWWKLW*PSPRVTRAVMT*SLGELRSSKG*S 693
Query: 104 APKKRVCARLLIKKENWCTRKILSHTTQKNAPNHSPVVAPATTRGIRIPV 153
+ A L +K T+KI P+ SP PAT+ G+ P+
Sbjct: 692 PSQ---WASELTQKVAC*TKKIRRIPA*MKPPHQSPQPRPATSMGMARPM 552
>ref|XM_001840393.1| Coprinopsis cinerea okayama7#130 hypothetical protein (CC1G_11602)
partial mRNA
Length = 915
Score = 49.7 bits (117), Expect = 4e-04, Method: Composition-based stats.
Identities = 39/97 (40%), Positives = 51/97 (52%)
Frame = -2
Query: 31 SITARGARCKLSQKPRKLQRKMYHFVTSMWCHRUPLR*SFGNWWUKLW*PSPRLMIAKRV 90
S++ + RC+ +P Q +M H V S W H R*S GNWW KLW*PSP + A
Sbjct: 461 SLSGKTLRCE--ARPSFWQVQMNHLVGSYWYHLIAFR*SMGNWWWKLW*PSPMVAKAVMT 288
Query: 91 ESCGVKSSEYGRVAPKKRVCARLLIKKENWCTRKILS 127
S GV S G V+P + A L +K W T+ L+
Sbjct: 287 WSRGVCLSSKG-VSPSQ--*ASELTQKVEW*TKHNLN 186
>gb|BT065846.1| Zea mays full-length cDNA clone ZM_BFc0136L10 mRNA, complete cds
Length = 1689
Score = 49.3 bits (116), Expect = 4e-04, Method: Composition-based stats.
Identities = 47/120 (39%), Positives = 56/120 (46%)
Frame = -3
Query: 44 KPRKLQRKMYHFVTSMWCHRUPLR*SFGNWWUKLW*PSPRLMIAKRVESCGVKSSEYGRV 103
+P Q +M H V S WCH LR*S GN W KLW PSPR+ A S G S G
Sbjct: 904 RPSCFQAQMLHLVGSYWCHSIALR*SEGNSWWKLWYPSPRVTRAVMTWSRGELRSSKGWS 725
Query: 104 APKKRVCARLLIKKENWCTRKILSHTTQKNAPNHSPVVAPATTRGIRIPVMVAITAKYLR 163
+ AR L +K T+KI P+ SP P T+ G P MV T + LR
Sbjct: 724 PSQ---WARELTQKVACWTKKIRRIPA*TKPPHQSPQPRPDTSMGTIRP-MVKTTLR*LR 557
>ref|XM_001817469.1| Aspergillus oryzae RIB40 hypothetical protein partial mRNA
Length = 1371
Score = 49.3 bits (116), Expect = 4e-04, Method: Composition-based stats.
Identities = 42/111 (37%), Positives = 53/111 (47%)
Frame = -2
Query: 44 KPRKLQRKMYHFVTSMWCHRUPLR*SFGNWWUKLW*PSPRLMIAKRVESCGVKSSEYGRV 103
+P Q +M H V S WCH LR*S GN W KLW PSPR+ A S G S G
Sbjct: 872 RPSCFQIQMLHLVGSYWCHSIALR*SEGNSWWKLWYPSPRVTRAVMTWSRGELRSSNGWS 693
Query: 104 APKKRVCARLLIKKENWCTRKILSHTTQKNAPNHSPVVAPATTRGIRIPVM 154
+ A+ L +K T+KI P+ SP PAT+ G P++
Sbjct: 692 PSQ---*AKELTQKVACWTKKIRRIPA*TKPPHQSPQPRPATSIGTNRPMV 549
>dbj|AP007151.1| Aspergillus oryzae RIB40 genomic DNA, SC005
Length = 4429080
Score = 49.3 bits (116), Expect = 4e-04, Method: Composition-based stats.
Identities = 42/111 (37%), Positives = 53/111 (47%)
Frame = -3
Query: 44 KPRKLQRKMYHFVTSMWCHRUPLR*SFGNWWUKLW*PSPRLMIAKRVESCGVKSSEYGRV 103
+P Q +M H V S WCH LR*S GN W KLW PSPR+ A S G S G
Sbjct: 1193362 RPSCFQIQMLHLVGSYWCHSIALR*SEGNSWWKLWYPSPRVTRAVMTWSRGELRSSNGWS 1193183
Query: 104 APKKRVCARLLIKKENWCTRKILSHTTQKNAPNHSPVVAPATTRGIRIPVM 154
+ A+ L +K T+KI P+ SP PAT+ G P++
Sbjct: 1193182 PSQ---*AKELTQKVACWTKKIRRIPA*TKPPHQSPQPRPATSIGTNRPMV 1193039
>dbj|AB110447.1| Lentinula edodes Le-FAD1 mRNA for delta 9-fatty acid desaturase,
complete cds
Length = 1650
Score = 49.3 bits (116), Expect = 5e-04, Method: Composition-based stats.
Identities = 44/123 (35%), Positives = 57/123 (46%)
Frame = -1
Query: 31 SITARGARCKLSQKPRKLQRKMYHFVTSMWCHRUPLR*SFGNWWUKLW*PSPRLMIAKRV 90
S++ + RC+ KP ++ H V S W H *S GNWW KLW PSP + A +
Sbjct: 1032 SLSGKTLRCE--AKPNLANTQIVHLVGSYWYHLMAFL*SMGNWWWKLWYPSPIVTNAVIM 859
Query: 91 ESCGVKSSEYGRVAPKKRVCARLLIKKENWCTRKILSHTTQKNAPNHSPVVAPATTRGIR 150
S GV S G V+P + CA L +K CT+ N P SP AT G
Sbjct: 858 WSRGVCLSSKG-VSPSQ--CASELTQKVE*CTKTNRMTPA*MNPPLASPHPT*ATIDGSM 688
Query: 151 IPV 153
P+
Sbjct: 687 KPM 679
>gb|DQ901954.2| Aureobasidium pullulans putative delta-9 desaturase (Ole1) gene,
complete cds
Length = 2655
Score = 48.9 bits (115), Expect = 5e-04, Method: Composition-based stats.
Identities = 34/87 (39%), Positives = 44/87 (50%)
Frame = -3
Query: 1 VAGTSSRLTSFAASTNPRSCVRTACIAAARSITARGARCKLSQKPRKLQRKMYHFVTSMW 60
+ G SR ++S RS +C SI+ + +P Q +M H V S W
Sbjct: 2176 ITGRDSRGVPQSSSARLRSIFFWSC*TRPFSISLERNCLRS*ARPSCFQVQMDHLVGSYW 1997
Query: 61 CHRUPLR*SFGNWWUKLW*PSPRLMIA 87
CH LR*S GN W KLW*PSPR+ +A
Sbjct: 1996 CHSMALR*SEGNSWWKLW*PSPRVTMA 1916
>emb|Y10422.1|CCCBSOLE1 C.curvatus strain CBS 570 Ole1 gene
Length = 1942
Score = 48.5 bits (114), Expect = 7e-04, Method: Composition-based stats.
Identities = 42/122 (34%), Positives = 54/122 (44%)
Frame = -3
Query: 32 ITARGARCKLSQKPRKLQRKMYHFVTSMWCHRUPLR*SFGNWWUKLW*PSPRLMIAKRVE 91
I+ G + +P +M H V S W H LR S GNWW KLW*PSP + A
Sbjct: 1481 ISLSGNFLRCEARPTLDMVQMNHLVGSYWYHLMALRKSMGNWWWKLW*PSPTVTSAVIKW 1302
Query: 92 SCGVKSSEYGRVAPKKRVCARLLIKKENWCTRKILSHTTQKNAPNHSPVVAPATTRGIRI 151
S GV G V+P + A L + W T+ + + P SP PAT G
Sbjct: 1301 SLGVCLLSKG-VSPSQ--WASELTQNVEWWTKTRRAAPAKSRPPFQSPQPRPATRVGKTR 1131
Query: 152 PV 153
P+
Sbjct: 1130 PM 1125
>ref|XM_743825.1| Aspergillus fumigatus Af293 stearic acid desaturase (SdeA),
putative (AFUA_7G05920), partial mRNA
Length = 1371
Score = 48.5 bits (114), Expect = 7e-04, Method: Composition-based stats.
Identities = 44/110 (40%), Positives = 52/110 (47%)
Frame = -2
Query: 44 KPRKLQRKMYHFVTSMWCHRUPLR*SFGNWWUKLW*PSPRLMIAKRVESCGVKSSEYGRV 103
+P Q +M H V S WCH LR*S GN KLW*PSPR+ A S G S G
Sbjct: 872 RPSCFQIQMVHLVGSYWCHSMALR*SEGNS*WKLW*PSPRVTRAVIT*SLGELRSSKG*S 693
Query: 104 APKKRVCARLLIKKENWCTRKILSHTTQKNAPNHSPVVAPATTRGIRIPV 153
+ AR L +K T+KI PN SP PAT+ G P+
Sbjct: 692 PSQ---WARELTQKVAC*TKKIRRIPA*MKPPNQSPQPRPATSMGTTSPI 552
>dbj|AK108952.1| Oryza sativa Japonica Group cDNA clone:002-153-C06, full insert
sequence
Length = 1861
Score = 48.5 bits (114), Expect = 8e-04, Method: Composition-based stats.
Identities = 38/101 (37%), Positives = 49/101 (48%)
Frame = -3
Query: 1 VAGTSSRLTSFAASTNPRSCVRTACIAAARSITARGARCKLSQKPRKLQRKMYHFVTSMW 60
+ G+ SR T ++ S +C SI+ +L +P LQ +M H V S W
Sbjct: 1262 ITGSWSRGTPQSSLARFWSIFFWSCWTRPFSISLERNCLRLEARPSLLQSQMDHLVGSYW 1083
Query: 61 CHRUPLR*SFGNWWUKLW*PSPRLMIAKRVESCGVKSSEYG 101
CH LR*S GN KLW*PSPR+ A S G+ S G
Sbjct: 1082 CHSMALR*SEGNS*WKLW*PSPRVTSAVMTWSLGLLRSSNG 960
>ref|XM_001941493.1| Pyrenophora tritici-repentis Pt-1C-BFP acyl-CoA desaturase
(Delta(9)-desaturase, mRNA
Length = 1565
Score = 48.1 bits (113), Expect = 8e-04, Method: Composition-based stats.
Identities = 29/62 (46%), Positives = 34/62 (54%)
Frame = -1
Query: 40 KLSQKPRKLQRKMYHFVTSMWCHRUPLR*SFGNWWUKLW*PSPRLMIAKRVESCGVKSSE 99
+L +P +M H V S WCH LR*S GN W KLW*PSPR+ A S G+ S
Sbjct: 854 RLEARPSLDHSQMDHLVGSYWCHSIALR*SEGNSWWKLW*PSPRVTSAVMTWSLGLLRSS 675
Query: 100 YG 101
G
Sbjct: 674 KG 669
>emb|BX842654.1| Bdellovibrio bacteriovorus complete genome, strain HD100; segment 9/11
Length = 344249
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 49/146 (33%), Positives = 67/146 (45%)
Frame = -3
Query: 12 AASTNPRSCVRTACIAAARSITARGARCKLSQKPRKLQRKMYHFVTSMWCHRUPLR*SFG 71
+A++ R R + + RS+ AR P L+ ++ H V S W H PLR*S
Sbjct: 197361 SAASACRRAFRISTLEIWRSLVAR---------PMALKVRITHLVGSQWYHLIPLR*SIW 197209
Query: 72 NWWUKLW*PSPRLMIAKRVESCGVKSSEYGRVAPKKRVCARLLIKKENWCTRKILSHTTQ 131
N W KLW*PSP + IA ES S E +V R L+KK + R +
Sbjct: 197208 NLWWKLW*PSP*VRIATNQESRAEISLE---*VCLPKVWQRELMKKVDC*VRAMRRPPAI 197038
Query: 132 KNAPNHSPVVAPATTRGIRIPVMVAI 157
PN P+ P T+ G PV +A+
Sbjct: 197037 TRPPNQEPIAQP-TSIGKMNPVRIAM 196963
>ref|XM_767859.1| Cryptococcus neoformans var. neoformans B-3501A hypothetical protein
(CNBJ2280) partial mRNA
Length = 1785
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 44/118 (37%), Positives = 55/118 (46%)
Frame = -2
Query: 36 GARCKLSQKPRKLQRKMYHFVTSMWCHRUPLR*SFGNWWUKLW*PSPRLMIAKRVESCGV 95
G R K +P +M H V S W H R S GN W KLW*PSP + A + S G
Sbjct: 1070 GKRFK*EARPS*DMVQMNHLVGSYWNHLIAFRKS*GN*WWKLW*PSPMVQRAVMIWSRGE 891
Query: 96 KSSEYGRVAPKKRVCARLLIKKENWCTRKILSHTTQKNAPNHSPVVAPATTRGIRIPV 153
G +P + AR L +K W T+ L+ +K P SP PATT G P+
Sbjct: 890 CLLSKG-CSPSQ--WARELTQKVEWWTKHNLAAPAKKKPPLQSPQPRPATTVGRTKPI 726
>ref|XM_567496.1| Cryptococcus neoformans var. neoformans JEC21 stearoyl-CoA
9-desaturase (CNJ01180) partial mRNA
Length = 2106
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 44/118 (37%), Positives = 55/118 (46%)
Frame = -2
Query: 36 GARCKLSQKPRKLQRKMYHFVTSMWCHRUPLR*SFGNWWUKLW*PSPRLMIAKRVESCGV 95
G R K +P +M H V S W H R S GN W KLW*PSP + A + S G
Sbjct: 1220 GKRFK*EARPS*DMVQMNHLVGSYWNHLIAFRKS*GN*WWKLW*PSPMVQRAVMIWSRGE 1041
Query: 96 KSSEYGRVAPKKRVCARLLIKKENWCTRKILSHTTQKNAPNHSPVVAPATTRGIRIPV 153
G +P + AR L +K W T+ L+ +K P SP PATT G P+
Sbjct: 1040 CLLSKG-CSPSQ--WARELTQKVEWWTKHNLAAPAKKKPPLQSPQPRPATTVGRTKPI 876
>ref|XM_001391245.1| Aspergillus niger CBS 513.88 hypothetical protein (An07g01960)
partial mRNA
Length = 1371
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 47/120 (39%), Positives = 56/120 (46%)
Frame = -2
Query: 44 KPRKLQRKMYHFVTSMWCHRUPLR*SFGNWWUKLW*PSPRLMIAKRVESCGVKSSEYGRV 103
+P Q +M H V S WCH LR*S GN W KLW PSPR+ A S G S G
Sbjct: 872 RPSCFQAQMLHLVGSYWCHSIALR*SEGNSW*KLWYPSPRVTRAVMTWSRGELRSSKGWS 693
Query: 104 APKKRVCARLLIKKENWCTRKILSHTTQKNAPNHSPVVAPATTRGIRIPVMVAITAKYLR 163
+ AR L +K T+KI P+ SP P T+ G P MV T + LR
Sbjct: 692 PSQ---WARELTQKVAC*TKKIRRIPA*TKPPHQSPQPRPETSMGTIRP-MVKTTLR*LR 525
>emb|AM270121.1| Aspergillus niger contig An07c0030, complete genome
Length = 76886
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 47/120 (39%), Positives = 56/120 (46%)
Frame = -1
Query: 44 KPRKLQRKMYHFVTSMWCHRUPLR*SFGNWWUKLW*PSPRLMIAKRVESCGVKSSEYGRV 103
+P Q +M H V S WCH LR*S GN W KLW PSPR+ A S G S G
Sbjct: 32930 RPSCFQAQMLHLVGSYWCHSIALR*SEGNSW*KLWYPSPRVTRAVMTWSRGELRSSKGWS 32751
Query: 104 APKKRVCARLLIKKENWCTRKILSHTTQKNAPNHSPVVAPATTRGIRIPVMVAITAKYLR 163
+ AR L +K T+KI P+ SP P T+ G P MV T + LR
Sbjct: 32750 PSQ---WARELTQKVAC*TKKIRRIPA*TKPPHQSPQPRPETSMGTIRP-MVKTTLR*LR 32583
>emb|CR378677.1| Photobacterium profundum SS9 chromosome 2; segment 3/7
Length = 348759
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 52/140 (37%), Positives = 66/140 (47%), Gaps = 1/140 (0%)
Frame = -1
Query: 5 SSRLTSFAASTNPRSCVRTACI-AAARSITARGARCKLSQKPRKLQRKMYHFVTSMWCHR 63
+S+L + + N +C RT+CI A A SI + G L KP+ + H V S R
Sbjct: 177303 TSQLLALDVAVN-LACKRTSCIFARAFSIRSSGETRNLRVKPK*EHDLINHLVGSNCHQR 177127
Query: 64 UPLR*SFGNWWUKLW*PSPRLMIAKRVESCGVKSSEYGRVAPKKRVCARLLIKKENWCTR 123
PLR*SF N LW*PSP + A+ S V SEYG + A LIK R
Sbjct: 177126 MPLR*SFSNM*W*LW*PSPNVKYARIPLSRAVFLSEYG---*EPHT*ANELIKNVV**LR 176956
Query: 124 KILSHTTQKNAPNHSPVVAP 143
+ T NAP+ SP P
Sbjct: 176955 TKRTTPTSNNAPHISPCTTP 176896
>ref|XM_752009.1| Ustilago maydis 521 hypothetical protein (UM00955.1) partial mRNA
Length = 1635
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 33/80 (41%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Frame = -2
Query: 17 PRSCVRTACIAAARSITA-RGARCKLSQKPRKLQRKMYHFVTSMWCHRUPLR*SFGNWWU 75
P SC +CIA +T+ G + +P + H V S W H LR*S GNWW
Sbjct: 1016 PSSCAFWSCIARRPFLTSLSGNVLRCVARPSLYIEAINHLVGSNWYH*TALR*SIGNWWW 837
Query: 76 KLW*PSPRLMIAKRVESCGV 95
KLW*PSP + A + S GV
Sbjct: 836 KLW*PSPTVTRAVKKWSRGV 777
>dbj|AP007159.1| Aspergillus oryzae RIB40 genomic DNA, SC026
Length = 2324132
Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 55/162 (33%), Positives = 70/162 (43%)
Frame = -3
Query: 1 VAGTSSRLTSFAASTNPRSCVRTACIAAARSITARGARCKLSQKPRKLQRKMYHFVTSMW 60
+ G+SSR ++ C A +I+ K P KL + HFVTS W
Sbjct: 2169351 ITGSSSRGVPQSSRRFSSLSRLNLCCRRALAISLCRNLFKSPASPTKLHT*INHFVTSTW 2169172
Query: 61 CHRUPLR*SFGNWWUKLW*PSPRLMIAKRVESCGVKSSEYGRVAPKKRVCARLLIKKENW 120
CH P R*S GN KL PSPR++ A S GV S YG R CAR +K
Sbjct: 2169171 CHSMPFR*SEGNS**KL*NPSPRVISAVSR*SRGVCRSSYG*WP---R*CAREFTQKVA* 2169001
Query: 121 CTRKILSHTTQKNAPNHSPVVAPATTRGIRIPVMVAITAKYL 162
T+ +N P S +PAT +G P+ A YL
Sbjct: 2169000 LTKNARRTPA*RNPPVQSFHPSPATRQGSSQPMPKAAKK*YL 2168875
>gb|CP000388.1| Pseudoalteromonas atlantica T6c, complete genome
Length = 5187005
Score = 45.8 bits (107), Expect = 0.004, Method: Composition-based stats.
Identities = 49/137 (35%), Positives = 66/137 (48%), Gaps = 5/137 (3%)
Frame = -1
Query: 8 LTSFAASTNPRSCVRTACIAA-ARSITARGARCKLSQKPRKLQRKMYHFVTSMWCHRUPL 66
++S ST+ C R CIA A SI + G R K +P ++ H V S H PL
Sbjct: 4856573 ISSAFGSTDNFCCARCNCIAIFAFSIRSSGQRRKFLVQPINDSPRISHLVGSNCHHLMPL 4856394
Query: 67 R*SFGNWWUKLW*PSPRLMIAKRVESCGVKSSEYGRVAPKKRVCARLLIKKEN-WCT--- 122
R*S+ N W LW PSP++ AK S V S G + ++ AR LIK W T
Sbjct: 4856393 R*SYSNMWW*LWYPSPKVKKAKMSLSRAVFLSV*G---*RPQIWARELIKNVT*WTTTRR 4856223
Query: 123 RKILSHTTQKNAPNHSP 139
+K S+T +P + P
Sbjct: 4856222 KKPASNTIPSTSPFNQP 4856172
>gb|EU857727.1| Hortaea werneckii delta-9 desaturase isoenzyme B (Ole1) gene, partial
cds
Length = 3774
Score = 45.8 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 38/105 (36%), Positives = 49/105 (46%)
Frame = -2
Query: 44 KPRKLQRKMYHFVTSMWCHRUPLR*SFGNWWUKLW*PSPRLMIAKRVESCGVKSSEYGRV 103
+P Q ++ H V S WCH LR*S GN W KLW*PSP + A + S G+ S G
Sbjct: 3767 RPSCFQAQIDHLVGSYWCHSMALR*SDGNSWWKLW*PSPSVTRAVMIWSRGLLRSSKGWS 3588
Query: 104 APKKRVCARLLIKKENWCTRKILSHTTQKNAPNHSPVVAPATTRG 148
+ AR +K T+K+ P SP P T +G
Sbjct: 3587 PSQ---WAREFTQKVACWTKKMRRIPA*MKPPIQSPQPRPLTRQG 3462
>emb|AJ278339.1|MAL278339 Mortierella alpina scd3 gene for putative stearoyl-CoA desaturase,
exons 1-3
Length = 3100
Score = 45.8 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 31/70 (44%), Positives = 38/70 (54%)
Frame = -3
Query: 32 ITARGARCKLSQKPRKLQRKMYHFVTSMWCHRUPLR*SFGNWWUKLW*PSPRLMIAKRVE 91
I+ G R K P+ Q+ + HFV S W + *S GN W KLW*PSPR+ A R+
Sbjct: 2462 ISLVGNRFKSEASPKNAQKAISHFVGSYW*NLMAFL*S*GNSWWKLW*PSPRVTKAVRI* 2283
Query: 92 SCGVKSSEYG 101
S GV S G
Sbjct: 2282 SRGVWRSSKG 2253
>ref|XM_001936590.1| Pyrenophora tritici-repentis Pt-1C-BFP acyl-CoA desaturase
(Delta(9)-desaturase, mRNA
Length = 1341
Score = 45.8 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 39/98 (39%), Positives = 48/98 (48%)
Frame = -2
Query: 51 KMYHFVTSMWCHRUPLR*SFGNWWUKLW*PSPRLMIAKRVESCGVKSSEYGRVAPKKRVC 110
+M H V S W LR*S GN W KL PSP + A R S G+ S G +P + C
Sbjct: 818 QMSHLVGSYWYQTIALR*SLGNSWWKL*YPSPIVTRAVRTWSLGLLRSSNG-CSPIQ--C 648
Query: 111 ARLLIKKENWCTRKILSHTTQKNAPNHSPVVAPATTRG 148
ARL +K T++ L N P+ SP PAT G
Sbjct: 647 ARLFTQKVAC*TKQALMIPAYTNPPHQSPHPNPATRAG 534
>dbj|AK119943.1| Oryza sativa Japonica Group cDNA clone:002-184-B09, full insert
sequence
Length = 991
Score = 45.4 bits (106), Expect = 0.006, Method: Composition-based stats.
Identities = 31/71 (43%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Frame = -2
Query: 13 ASTNPRSCVRTACIAAARSITA-RGARCKLSQKPRKLQRKMYHFVTSMWCHRUPLR*SFG 71
+S P SC +CIA +T+ G + +P L M H V S W H LR*S G
Sbjct: 231 SSCGPSSCAFWSCIARRPFLTSLSGKVLRCEARPSLLMVPMNHLVGSNWYH*TALR*SIG 52
Query: 72 NWWUKLW*PSP 82
NWW KL *PSP
Sbjct: 51 NWWWKL**PSP 19
>dbj|BA000038.2| Vibrio vulnificus YJ016 DNA, chromosome II, complete sequence
Length = 1857073
Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats.
Identities = 31/63 (49%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Frame = +3
Query: 27 AAARSITARGARCKLSQKPRKLQRKMYHFVTSMWCHR-UPLR*SFGNWWUKLW*PSPRLM 85
A A SI G R KL +P Q + HFV S +CH+ PLR*SF W KLW PSP++
Sbjct: 647748 ALALSIFICGVRRKLRVRPNHEQLLINHFVGS-YCHQ*IPLR*SFSKIW*KLWYPSPKVK 647924
Query: 86 IAK 88
AK
Sbjct: 647925 TAK 647933
>emb|AM411538.1| Mortierella alpina partial mRNA for delta9 fatty acid desaturase
(d9DS gene), strain 1S-4
Length = 726
Score = 45.1 bits (105), Expect = 0.008, Method: Composition-based stats.
Identities = 37/80 (46%), Positives = 44/80 (55%)
Frame = -1
Query: 44 KPRKLQRKMYHFVTSMWCHRUPLR*SFGNWWUKLW*PSPRLMIAKRVESCGVKSSEYGRV 103
+P+K QR M HFV S W R LR*S+GNW KLW*PSP++ A S G S G
Sbjct: 708 RPKKAQRAMTHFVGSYW*KRIALR*SWGNW*WKLW*PSPKVTKAVIKWSRGEWRSSKG-- 535
Query: 104 APKKRVCARLLIKKENWCTR 123
P AR L +K W T+
Sbjct: 534 -PSPSQ*ARELTQKVAWWTK 478
>dbj|AB015612.1| Mortierella alpina gene for delta-9 fatty acid desaturase, complete
cds
Length = 2161
Score = 45.1 bits (105), Expect = 0.008, Method: Composition-based stats.
Identities = 37/80 (46%), Positives = 44/80 (55%)
Frame = -2
Query: 44 KPRKLQRKMYHFVTSMWCHRUPLR*SFGNWWUKLW*PSPRLMIAKRVESCGVKSSEYGRV 103
+P+K QR M HFV S W R LR*S+GNW KLW*PSP++ A S G S G
Sbjct: 1497 RPKKAQRAMTHFVGSYW*KRIALR*SWGNW*WKLW*PSPKVTKAVIKWSRGEWRSSKG-- 1324
Query: 104 APKKRVCARLLIKKENWCTR 123
P AR L +K W T+
Sbjct: 1323 -PSPSQ*ARELTQKVAWWTK 1267
>dbj|AB015611.1| Mortierella alpina mRNA for delta-9 fatty acid desaturase, complete
cds
Length = 1694
Score = 45.1 bits (105), Expect = 0.008, Method: Composition-based stats.
Identities = 37/80 (46%), Positives = 44/80 (55%)
Frame = -2
Query: 44 KPRKLQRKMYHFVTSMWCHRUPLR*SFGNWWUKLW*PSPRLMIAKRVESCGVKSSEYGRV 103
+P+K QR M HFV S W R LR*S+GNW KLW*PSP++ A S G S G
Sbjct: 1051 RPKKAQRAMTHFVGSYW*KRIALR*SWGNW*WKLW*PSPKVTKAVIKWSRGEWRSSKG-- 878
Query: 104 APKKRVCARLLIKKENWCTR 123
P AR L +K W T+
Sbjct: 877 -PSPSQ*ARELTQKVAWWTK 821
>dbj|AB196774.1| Mortierella alpina gene for omega9 fatty acid desaturase, complete
cds
Length = 2701
Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats.
Identities = 32/70 (45%), Positives = 37/70 (52%)
Frame = -2
Query: 32 ITARGARCKLSQKPRKLQRKMYHFVTSMWCHRUPLR*SFGNWWUKLW*PSPRLMIAKRVE 91
I+ G R K PRK Q + HFV S W + *S GN W KLW PSPR+ A R+
Sbjct: 2265 ISLVGKRFKSEANPRKAQNAINHFVGSYW*NLMAFL*S*GNSW*KLWYPSPRVTRAVRI* 2086
Query: 92 SCGVKSSEYG 101
S GV S G
Sbjct: 2085 SRGVWRSSKG 2056
>ref|XM_001909169.1| Podospora anserina DSM 980 hypothetical protein (PODANSg6239)
partial mRNA
Length = 1437
Score = 44.7 bits (104), Expect = 0.010, Method: Composition-based stats.
Identities = 31/78 (39%), Positives = 38/78 (48%)
Frame = -2
Query: 24 ACIAAARSITARGARCKLSQKPRKLQRKMYHFVTSMWCHRUPLR*SFGNWWUKLW*PSPR 83
+C + SI+ G +L +PR +M H V S H LR S GN W KLW*PSPR
Sbjct: 992 SCWSLPFSISFWGNVLRLYARPRNFMIEMNHLVGSYCHHSIALRKSLGNSWWKLW*PSPR 813
Query: 84 LMIAKRVESCGVKSSEYG 101
+ A S G S G
Sbjct: 812 VTRAVMT*SLGELRSSKG 759
>gb|CP000302.1| Shewanella denitrificans OS217, complete genome
Length = 4545906
Score = 44.3 bits (103), Expect = 0.012, Method: Composition-based stats.
Identities = 45/117 (38%), Positives = 59/117 (50%), Gaps = 1/117 (0%)
Frame = +2
Query: 20 CVRTACIAA-ARSITARGARCKLSQKPRKLQRKMYHFVTSMWCHRUPLR*SFGNWWUKLW 78
C + CI A S+ + G K KP +L + H V S H PLR*SF W KLW
Sbjct: 255620 CTLSNCICKRALSMRS*GTLRKSLAKPNQLNNLINHLVGS*SHHLIPLR*SFSKIW*KLW 255799
Query: 79 *PSPRLMIAKRVESCGVKSSEYGRVAPKKRVCARLLIKKENWCTRKILSHTTQKNAP 135
*PSP + AK+ S V S G + ++CA+ L+KK CT TT++N P
Sbjct: 255800 *PSP*VSKAKKALSRAVFLSV*G---CEPQMCAKELMKKVQ*CT------TTRRNKP 255943
>ref|XM_501496.1| Yarrowia lipolytica YALI0C05951p (YALI0C05951g) mRNA, complete cds
Length = 1449
Score = 44.3 bits (103), Expect = 0.012, Method: Composition-based stats.
Identities = 49/142 (34%), Positives = 61/142 (42%)
Frame = -2
Query: 7 RLTSFAASTNPRSCVRTACIAAARSITARGARCKLSQKPRKLQRKMYHFVTSMWCHRUPL 66
RL +S R C R +A + AR P L+ +M H V S W
Sbjct: 1040 RLFRHLSSFFCRCCTRPCSMAFWEKVWRSQAR------PTCLRVQMSHLVGSYWYQMRAF 879
Query: 67 R*SFGNWWUKLW*PSPRLMIAKRVESCGVKSSEYGRVAPKKRVCARLLIKKENWCTRKIL 126
R*S GN W KLW*PSP++ A R S GV+ S G +P + AR L +K CT+
Sbjct: 878 R*SEGNSWWKLW*PSPKVTRAVRAWSRGVRRSSKG-CSPIQ--WARELTQKVTCCTKVYR 708
Query: 127 SHTTQKNAPNHSPVVAPATTRG 148
P SP P T G
Sbjct: 707 MIPA*TRPPFQSPQPKPQTRVG 642
>emb|CR382129.1| Yarrowia lipolytica strain CLIB122 chromosome C complete sequence
Length = 3272609
Score = 44.3 bits (103), Expect = 0.012, Method: Composition-based stats.
Identities = 49/142 (34%), Positives = 61/142 (42%)
Frame = -2
Query: 7 RLTSFAASTNPRSCVRTACIAAARSITARGARCKLSQKPRKLQRKMYHFVTSMWCHRUPL 66
RL +S R C R +A + AR P L+ +M H V S W
Sbjct: 765409 RLFRHLSSFFCRCCTRPCSMAFWEKVWRSQAR------PTCLRVQMSHLVGSYWYQMRAF 765248
Query: 67 R*SFGNWWUKLW*PSPRLMIAKRVESCGVKSSEYGRVAPKKRVCARLLIKKENWCTRKIL 126
R*S GN W KLW*PSP++ A R S GV+ S G +P + AR L +K CT+
Sbjct: 765247 R*SEGNSWWKLW*PSPKVTRAVRAWSRGVRRSSKG-CSPIQ--WARELTQKVTCCTKVYR 765077
Query: 127 SHTTQKNAPNHSPVVAPATTRG 148
P SP P T G
Sbjct: 765076 MIPA*TRPPFQSPQPKPQTRVG 765011
>gb|CP000851.1| Shewanella pealeana ATCC 700345, complete genome
Length = 5174581
Score = 44.3 bits (103), Expect = 0.012, Method: Composition-based stats.
Identities = 48/126 (38%), Positives = 60/126 (47%), Gaps = 2/126 (1%)
Frame = +2
Query: 21 VRTACIAA-ARSITARGARCKLSQKPRKLQRKMYHFVTSMWCHR-UPLR*SFGNWWUKLW 78
VR CI A SI + G + P + + M H V S +CH+ PLR*SF W LW
Sbjct: 177326 VRFNCICKRACSIFSCGTTRRPLASPIQAKVLMSHLVGS-YCHQ*MPLR*SFSKIW**LW 177502
Query: 79 *PSPRLMIAKRVESCGVKSSEYGRVAPKKRVCARLLIKKENWCTRKILSHTTQKNAPNHS 138
*PSP + A + S V S G + + CA LIKK WCT S+ N P S
Sbjct: 177503 *PSP*VNSAMKPLSRAVFLSV*G---CEPQTCASELIKKVQWCTTTRRSNPANNNMPKMS 177673
Query: 139 PVVAPA 144
P P+
Sbjct: 177674 PFNQPS 177691
>emb|FM954973.2| Vibrio splendidus LGP32 chromosome 2
Length = 1675515
Score = 44.3 bits (103), Expect = 0.014, Method: Composition-based stats.
Identities = 50/127 (39%), Positives = 65/127 (51%), Gaps = 3/127 (2%)
Frame = +2
Query: 20 CVRTACI-AAARSITARGARCKLSQKPRKLQRKMYHFVTSMWCHR-UPLR*SFGNWWUKL 77
CVR + I A+A SI A G L P K + HFV S +CH+ PLR*SF W KL
Sbjct: 688334 CVRLSNIDASAFSIRA*GVFLSLLANPIKEALLINHFVGS-YCHQ*MPLR*SFSKMWWKL 688510
Query: 78 W*PSPRLMIAKRVESCGVKSSEYGRVAPKKRVCARLLIKKEN-WCTRKILSHTTQKNAPN 136
W*PSP++ A S V S G + ++ AR L+K W + K + T N P+
Sbjct: 688511 W*PSPKVRTANTPLSRAVFLSVKGWLP---QM*ARELMKNVV*WLSTKRTAPTIN-NMPS 688678
Query: 137 HSPVVAP 143
SP + P
Sbjct: 688679 TSP*ITP 688699
>gb|CP000644.1| Aeromonas salmonicida subsp. salmonicida A449, complete genome
Length = 4702402
Score = 44.3 bits (103), Expect = 0.014, Method: Composition-based stats.
Identities = 44/136 (32%), Positives = 68/136 (50%), Gaps = 1/136 (0%)
Frame = -2
Query: 22 RTACIAA-ARSITARGARCKLSQKPRKLQRKMYHFVTSMWCHRUPLR*SFGNWWUKLW*P 80
R +CI++ A SI + G + P + ++ H V S R PLR*SF N W KL *P
Sbjct: 4260015 RLSCISSLACSIRSSGQDLRSRASPHQEALRISHLVGSNCHQRMPLR*SFSNRWWKL**P 4259836
Query: 81 SPRLMIAKRVESCGVKSSEYGRVAPKKRVCARLLIKKENWCTRKILSHTTQKNAPNHSPV 140
SP++ A+ S V S G + ++ AR L+KK W + S + P+ SP
Sbjct: 4259835 SPKVKKARMPLSLAVLRSVNG*LP---QMWARELMKKVVWWVITMRSTPASSSMPSRSPW 4259665
Query: 141 VAPATTRGIRIPVMVA 156
+P+++ R+ V+
Sbjct: 4259664 TSPSSSGMPRLVARVS 4259617
>dbj|AB226115.1| Aspergillus oryzae cDNA, contig sequence: AoEST2972
Length = 1314
Score = 43.9 bits (102), Expect = 0.017, Method: Composition-based stats.
Identities = 39/101 (38%), Positives = 48/101 (47%)
Frame = -1
Query: 54 HFVTSMWCHRUPLR*SFGNWWUKLW*PSPRLMIAKRVESCGVKSSEYGRVAPKKRVCARL 113
H V S WCH LR*S GN W KLW PSPR+ A S G S G + A+
Sbjct: 1161 HLVGSYWCHSIALR*SEGNSWWKLWYPSPRVTRAVMTWSRGELRSSNGWSPSQ---*AKE 991
Query: 114 LIKKENWCTRKILSHTTQKNAPNHSPVVAPATTRGIRIPVM 154
L +K T+KI P+ SP PAT+ G P++
Sbjct: 990 LTQKVACWTKKIRRIPA*TKPPHQSPQPRPATSIGTNRPMV 868
>dbj|AP006495.2| Cyanidioschyzon merolae DNA, chromosome 13, complete genome, complete
sequence
Length = 866983
Score = 43.5 bits (101), Expect = 0.026, Method: Composition-based stats.
Identities = 44/129 (34%), Positives = 56/129 (43%)
Frame = +2
Query: 29 ARSITARGARCKLSQKPRKLQRKMYHFVTSMWCHRUPLR*SFGNWWUKLW*PSPRLMIAK 88
A + + RG R K P + ++ H V S H PLR*S GN W KLW*PSP + A
Sbjct: 96734 AFTSSLRGNRTKCHASPAHDRSRITHLVGSQ*YHTTPLR*SCGNSWWKLW*PSPSVTSAV 96913
Query: 89 RVESCGVKSSEYGRVAPKKRVCARLLIKKENWCTRKILSHTTQKNAPNHSPVVAPATTRG 148
ES V E +P + CAR L + + T I P SP + G
Sbjct: 96914 ITES*LVCRRE-KVCSPHQ--CARELTQNVDCWTNSIRPRQAYTRPPQKSPHPSVDIVNG 97084
Query: 149 IRIPVMVAI 157
I +AI
Sbjct: 97085 ITNEKRIAI 97111
>dbj|AB006677.1| Cyanidioschyzon merolae CmFAD9 gene for delta-9 fatty acid
desaturase, complete cds
Length = 4694
Score = 43.5 bits (101), Expect = 0.026, Method: Composition-based stats.
Identities = 44/129 (34%), Positives = 56/129 (43%)
Frame = -3
Query: 29 ARSITARGARCKLSQKPRKLQRKMYHFVTSMWCHRUPLR*SFGNWWUKLW*PSPRLMIAK 88
A + + RG R K P + ++ H V S H PLR*S GN W KLW*PSP + A
Sbjct: 2694 AFTSSLRGNRTKCHASPAHDRSRITHLVGSQ*YHTTPLR*SCGNSWWKLW*PSPSVTSAV 2515
Query: 89 RVESCGVKSSEYGRVAPKKRVCARLLIKKENWCTRKILSHTTQKNAPNHSPVVAPATTRG 148
ES V E +P + CAR L + + T I P SP + G
Sbjct: 2514 ITES*LVCRRE-KVCSPHQ--CARELTQNVDCWTNSIRPRQAYTRPPQKSPHPSVDIVNG 2344
Query: 149 IRIPVMVAI 157
I +AI
Sbjct: 2343 ITNEKRIAI 2317
>ref|XM_001528022.1| Lodderomyces elongisporus NRRL YB-4239 acyl-CoA desaturase 1
(LELG_00592) partial mRNA
Length = 1479
Score = 43.1 bits (100), Expect = 0.026, Method: Composition-based stats.
Identities = 39/110 (35%), Positives = 47/110 (42%)
Frame = -2
Query: 40 KLSQKPRKLQRKMYHFVTSMWCHRUPLR*SFGNWWUKLW*PSPRLMIAKRVESCGVKSSE 99
K +P + M FV S W H *S GN W KLW*PSP++ A S GV S
Sbjct: 1070 KFHARPNLDKA*MITFVGSYWYHFNAFL*SLGNSWWKLW*PSPKVTNAVNTWSLGVLLSS 891
Query: 100 YGRVAPKKRVCARLLIKKENWCTRKILSHTTQKNAPNHSPVVAPATTRGI 149
G + A L +K +K L N P SP PAT G+
Sbjct: 890 NGCTPIQ---WANELTQKVACWMKKDLKIPA*INPPQ*SPHPKPATKVGV 750
>gb|CP000606.1| Shewanella loihica PV-4, complete genome
Length = 4602594
Score = 43.1 bits (100), Expect = 0.028, Method: Composition-based stats.
Identities = 48/141 (34%), Positives = 64/141 (45%), Gaps = 1/141 (0%)
Frame = +2
Query: 6 SRLTSFAASTNPRSCVRTACIA-AARSITARGARCKLSQKPRKLQRKMYHFVTSMWCHRU 64
SR++S+ AS C +CI A SI + G +L P + + H V S R
Sbjct: 146069 SRISSWLASCVTLCCAFFSCICNLALSIRSCGVTLRLLASPVQAMALISHLVGS*CHQRM 146248
Query: 65 PLR*SFGNWWUKLW*PSPRLMIAKRVESCGVKSSEYGRVAPKKRVCARLLIKKENWCTRK 124
PLR*SF W KL *PSP + A S V S G + ++ A L+KK WCT
Sbjct: 146249 PLR*SFSKMWWKL**PSP*VNSASTPLSRAVFLSV*GWLP---QMWASELMKKVQWCTTT 146419
Query: 125 ILSHTTQKNAPNHSPVVAPAT 145
S N SP+ P++
Sbjct: 146420 RRSRPAISNMAQTSPLSQPSS 146482
>emb|Y18553.1|MAL18553 Mortierella alpina ole1 gene for stearoyl-CoA desaturase
Length = 3326
Score = 43.1 bits (100), Expect = 0.029, Method: Composition-based stats.
Identities = 36/80 (45%), Positives = 43/80 (53%)
Frame = -3
Query: 44 KPRKLQRKMYHFVTSMWCHRUPLR*SFGNWWUKLW*PSPRLMIAKRVESCGVKSSEYGRV 103
+P+K QR M H V S W R LR*S+GNW KLW*PSP++ A S G S G
Sbjct: 2721 RPKKAQRAMTHLVGSYW*KRIALR*SWGNW**KLW*PSPKVTKAVMKWSRGEWRSSKG-- 2548
Query: 104 APKKRVCARLLIKKENWCTR 123
P AR L +K W T+
Sbjct: 2547 -PSPSQWARELTQKVAW*TK 2491
>gb|AE016796.1| Vibrio vulnificus CMCP6 chromosome II, complete sequence
Length = 1844853
Score = 42.7 bits (99), Expect = 0.039, Method: Composition-based stats.
Identities = 31/63 (49%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Frame = +1
Query: 27 AAARSITARGARCKLSQKPRKLQRKMYHFVTSMWCHR-UPLR*SFGNWWUKLW*PSPRLM 85
A A SI G R KL +P Q + HFV S +CH+ PLR*SF W KLW PSP++
Sbjct: 69130 ALALSIFICGVRRKLRVRPNHEQLLINHFVGS-YCHQ*IPLR*SFSKIW*KLWYPSPKVK 69306
Query: 86 IAK 88
AK
Sbjct: 69307 TAK 69315
>dbj|AP007174.1| Aspergillus oryzae RIB40 genomic DNA, SC103
Length = 1282697
Score = 42.4 bits (98), Expect = 0.044, Method: Composition-based stats.
Identities = 44/131 (33%), Positives = 54/131 (41%)
Frame = -1
Query: 18 RSCVRTACIAAARSITARGARCKLSQKPRKLQRKMYHFVTSMWCHRUPLR*SFGNWWUKL 77
RS AC T GA K +P +++H VTS W H L *S GN W L
Sbjct: 739772 RSSFFRACWYVPLPTTLSGAFFKPYARPSCFHTQIHHLVTSHWYHSTTL**SAGNSWW*L 739593
Query: 78 W*PSPRLMIAKRVESCGVKSSEYGRVAPKKRVCARLLIKKENWCTRKILSHTTQKNAPNH 137
W PSP+ V GV S G + CA I+K W +K N P
Sbjct: 739592 WYPSPKQRSVTSVWFRGVCLSS*GWSPTQ---CAIE*IEKIAW*QKKRPMTPAYMNPPC* 739422
Query: 138 SPVVAPATTRG 148
SP +P +T G
Sbjct: 739421 SPQRSPGSTEG 739389
>gb|CP000444.1| Shewanella sp. MR-7, complete genome
Length = 4792610
Score = 42.4 bits (98), Expect = 0.046, Method: Composition-based stats.
Identities = 47/123 (38%), Positives = 57/123 (46%), Gaps = 1/123 (0%)
Frame = +1
Query: 23 TACIAA-ARSITARGARCKLSQKPRKLQRKMYHFVTSMWCHRUPLR*SFGNWWUKLW*PS 81
++CI A SI + G K KP + + H V S H PLR*SF W KLW*PS
Sbjct: 192598 SSCICKRALSIRSCGLVRKSVAKPTQDNALINHLVGS*CHHLMPLR*SFSKIWWKLW*PS 192777
Query: 82 PRLMIAKRVESCGVKSSEYGRVAPKKRVCARLLIKKENWCTRKILSHTTQKNAPNHSPVV 141
P + IAK+ S V S G + AR L+KK CT S N P PV
Sbjct: 192778 P*VNIAKKPLSRAVFLSV*GWLP---HTWARELMKKVQ*CTTTNRSKPAISNMPAILPVN 192948
Query: 142 APA 144
P+
Sbjct: 192949 QPS 192957
>ref|XM_001547712.1| Botryotinia fuckeliana B05.10 acyl-CoA desaturase (BC1G_13792)
partial mRNA
Length = 1404
Score = 42.4 bits (98), Expect = 0.049, Method: Composition-based stats.
Identities = 42/114 (36%), Positives = 52/114 (45%)
Frame = -2
Query: 44 KPRKLQRKMYHFVTSMWCHRUPLR*SFGNWWUKLW*PSPRLMIAKRVESCGVKSSEYGRV 103
+P +M H V S CH LR*S GN KLW*PSPR+ A S G S G
Sbjct: 899 RPSCFHIQMDHLVGSY*CHSIALR*SEGNS*WKLW*PSPRVTRAVMT*SRGELRSSKGWS 720
Query: 104 APKKRVCARLLIKKENWCTRKILSHTTQKNAPNHSPVVAPATTRGIRIPVMVAI 157
+ A+ L +K T+KIL PN SP P T G IP+ + +
Sbjct: 719 PSQ---*AKELTQKVAC*TKKILRIPA*MKPPNQSPQPRPVTRHGKTIPMKMTV 567
>emb|CR382138.2| Debaryomyces hansenii strain CBS767 chromosome F complete sequence
Length = 2305761
Score = 42.4 bits (98), Expect = 0.053, Method: Composition-based stats.
Identities = 40/108 (37%), Positives = 48/108 (44%)
Frame = -1
Query: 51 KMYHFVTSMWCHRUPLR*SFGNWWUKLW*PSPRLMIAKRVESCGVKSSEYGRVAPKKRVC 110
+M V S W H LR*S GN W KLW*PSP++ A S GV S G + + C
Sbjct: 349326 QMVILVGSYWYHIKALR*SDGNSWWKLW*PSPKVTNAVITLSLGVLLSSNG*LPIQ---C 349156
Query: 111 ARLLIKKENWCTRKILSHTTQKNAPNHSPVVAPATTRGIRIPVMVAIT 158
A LI +K L N P SP PA G + + IT
Sbjct: 349155 ANELIANVAC*MKKDLMIPP*TNPPQ*SPHPNPAIKVGSTRAMKIIIT 349012
>ref|XM_460535.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0F04268g)
partial mRNA
Length = 1455
Score = 42.4 bits (98), Expect = 0.053, Method: Composition-based stats.
Identities = 40/108 (37%), Positives = 48/108 (44%)
Frame = -2
Query: 51 KMYHFVTSMWCHRUPLR*SFGNWWUKLW*PSPRLMIAKRVESCGVKSSEYGRVAPKKRVC 110
+M V S W H LR*S GN W KLW*PSP++ A S GV S G + + C
Sbjct: 1013 QMVILVGSYWYHIKALR*SDGNSWWKLW*PSPKVTNAVITLSLGVLLSSNG*LPIQ---C 843
Query: 111 ARLLIKKENWCTRKILSHTTQKNAPNHSPVVAPATTRGIRIPVMVAIT 158
A LI +K L N P SP PA G + + IT
Sbjct: 842 ANELIANVAC*MKKDLMIPP*TNPPQ*SPHPNPAIKVGSTRAMKIIIT 699
>gb|AF085500.2|AF085500 Mortierella alpina delta nine desaturase mRNA, complete cds
Length = 1735
Score = 42.0 bits (97), Expect = 0.063, Method: Composition-based stats.
Identities = 46/111 (41%), Positives = 55/111 (49%)
Frame = -3
Query: 44 KPRKLQRKMYHFVTSMWCHRUPLR*SFGNWWUKLW*PSPRLMIAKRVESCGVKSSEYGRV 103
+P+K Q M H V S W R LR*S+GNW KLW*PSP++ A S G S G
Sbjct: 1094 RPKKAQMAMTHLVGSYW*KRIALR*SWGNW*WKLW*PSPKVTKAVMKWSRGEWRSSKG-- 921
Query: 104 APKKRVCARLLIKKENWCTRKILSHTTQKNAPNHSPVVAPATTRGIRIPVM 154
P AR L +K W T+ K P SP +PATT G P+M
Sbjct: 920 -PSPSQWARELTQKVAW*TKTRRRIAA*K*PPRQSPQPSPATTVGKTRPMM 771
>ref|XM_001822481.1| Aspergillus oryzae RIB40 hypothetical protein partial mRNA
Length = 1410
Score = 42.0 bits (97), Expect = 0.065, Method: Composition-based stats.
Identities = 28/58 (48%), Positives = 31/58 (53%)
Frame = -2
Query: 44 KPRKLQRKMYHFVTSMWCHRUPLR*SFGNWWUKLW*PSPRLMIAKRVESCGVKSSEYG 101
+P Q +M HFV S H LR*S GN W KLW*PSPR+ A S G S G
Sbjct: 911 RPSCFQIQMDHFVGSYCHHSIALR*SDGNSWWKLW*PSPRVTKAVMTWSLGELRSSKG 738
>dbj|AB226022.1| Aspergillus oryzae cDNA, contig sequence: AoEST2878
Length = 1022
Score = 42.0 bits (97), Expect = 0.065, Method: Composition-based stats.
Identities = 28/58 (48%), Positives = 31/58 (53%)
Frame = -1
Query: 44 KPRKLQRKMYHFVTSMWCHRUPLR*SFGNWWUKLW*PSPRLMIAKRVESCGVKSSEYG 101
+P Q +M HFV S H LR*S GN W KLW*PSPR+ A S G S G
Sbjct: 386 RPSCFQIQMDHFVGSYCHHSIALR*SDGNSWWKLW*PSPRVTKAVMTWSLGELRSSKG 213
>dbj|AP007162.1| Aspergillus oryzae RIB40 genomic DNA, SC102
Length = 1779707
Score = 42.0 bits (97), Expect = 0.065, Method: Composition-based stats.
Identities = 28/58 (48%), Positives = 31/58 (53%)
Frame = -2
Query: 44 KPRKLQRKMYHFVTSMWCHRUPLR*SFGNWWUKLW*PSPRLMIAKRVESCGVKSSEYG 101
+P Q +M HFV S H LR*S GN W KLW*PSPR+ A S G S G
Sbjct: 935803 RPSCFQIQMDHFVGSYCHHSIALR*SDGNSWWKLW*PSPRVTKAVMTWSLGELRSSKG 935630
>gb|EU017503.1| Pichia pastoris delta 9-fatty acid desaturase mRNA, partial cds
Length = 1194
Score = 41.6 bits (96), Expect = 0.091, Method: Composition-based stats.
Identities = 27/62 (43%), Positives = 31/62 (50%)
Frame = -2
Query: 40 KLSQKPRKLQRKMYHFVTSMWCHRUPLR*SFGNWWUKLW*PSPRLMIAKRVESCGVKSSE 99
KL P + M FV S W H *S GN W KLW PSP++ IA + S GV S
Sbjct: 767 KL*DNPTLDDK*MTIFVGSYWYHFRAFL*SDGNSWWKLWYPSPKVTIAVKK*SLGVLLSS 588
Query: 100 YG 101
G
Sbjct: 587 NG 582
>gb|CP000469.1| Shewanella sp. ANA-3, complete genome
Length = 4972204
Score = 41.2 bits (95), Expect = 0.13, Method: Composition-based stats.
Identities = 43/117 (36%), Positives = 55/117 (47%)
Frame = +2
Query: 29 ARSITARGARCKLSQKPRKLQRKMYHFVTSMWCHRUPLR*SFGNWWUKLW*PSPRLMIAK 88
A SI + G + KP + + + H V S H PLR*SF W KLW*PSP + IA+
Sbjct: 211037 ALSIRSCGLVRRSLAKPTQDKPLINHLVGS*CHHLIPLR*SFSKIWWKLW*PSP*VNIAR 211216
Query: 89 RVESCGVKSSEYGRVAPKKRVCARLLIKKENWCTRKILSHTTQKNAPNHSPVVAPAT 145
+ S V S G + AR LIK CT S+ N P PV P++
Sbjct: 211217 KPLSRAVFLSV*GWLP---HTWARELIKNVQ*CTTTKRSNPAISNMPAILPVNQPSS 211378
>ref|XM_001884806.1| Laccaria bicolor S238N-H82 delta 9-fatty acid desaturase protein
partial mRNA
Length = 1629
Score = 40.8 bits (94), Expect = 0.14, Method: Composition-based stats.
Identities = 42/118 (35%), Positives = 50/118 (42%)
Frame = -1
Query: 36 GARCKLSQKPRKLQRKMYHFVTSMWCHRUPLR*SFGNWWUKLW*PSPRLMIAKRVESCGV 95
G + KP +M H V S W H R*S GN W KL *PSP + A S GV
Sbjct: 951 GKTLRWEAKPSF*HAQMNHLVGSYWYHLMAFR*SIGN*WWKL**PSPIVANAVMRWSRGV 772
Query: 96 KSSEYGRVAPKKRVCARLLIKKENWCTRKILSHTTQKNAPNHSPVVAPATTRGIRIPV 153
S G V+P + CA L + W T+ L P SP TT G P+
Sbjct: 771 CLSSKG-VSPSQ--CASELTQNVEWWTKHNLRTPAYMYPP*ASPHNNHGTTVGRMKPM 607
>ref|XM_386360.1| Gibberella zeae PH-1 hypothetical protein partial mRNA
Length = 1428
Score = 40.8 bits (94), Expect = 0.15, Method: Composition-based stats.
Identities = 39/105 (37%), Positives = 47/105 (44%)
Frame = -2
Query: 44 KPRKLQRKMYHFVTSMWCHRUPLR*SFGNWWUKLW*PSPRLMIAKRVESCGVKSSEYGRV 103
+P Q +M H V S H LR*S GN W KLW*PSPR+ A S G S G
Sbjct: 923 RPSCFQSQMLHLVGSYCHHSIALR*SEGNSWWKLW*PSPRVTRAVMTWSRGELRSSKGWS 744
Query: 104 APKKRVCARLLIKKENWCTRKILSHTTQKNAPNHSPVVAPATTRG 148
+ AR L +K T++ P+ SP PAT G
Sbjct: 743 PSQ---WARELTQKVACWTKQTRRIPA*TRPPHQSPQPRPATIAG 618
>gb|CP000753.1| Shewanella baltica OS185, complete genome
Length = 5229686
Score = 40.8 bits (94), Expect = 0.17, Method: Composition-based stats.
Identities = 44/125 (35%), Positives = 58/125 (46%), Gaps = 1/125 (0%)
Frame = +1
Query: 21 VRTACIAA-ARSITARGARCKLSQKPRKLQRKMYHFVTSMWCHRUPLR*SFGNWWUKLW* 79
VR++CI A SI + G K P + + H V S H PLR*SF KLW*
Sbjct: 213352 VRSSCICKRALSIRSCGLVRKSLANPNQDNDLINHLVGS*CHHLMPLR*SFSKM*WKLW* 213531
Query: 80 PSPRLMIAKRVESCGVKSSEYGRVAPKKRVCARLLIKKENWCTRKILSHTTQKNAPNHSP 139
PSP + +A++ S V S G + CA+ L+KK CT S N + SP
Sbjct: 213532 PSP*VSMARKPLSRAVFLSV*GWLP---HTCAKELMKKVQ*CTTTKRSRPAINNIDSTSP 213702
Query: 140 VVAPA 144
P+
Sbjct: 213703 FSQPS 213717
>emb|CR954246.1| Pseudoalteromonas haloplanktis str. TAC125 chromosome I, complete sequence
Length = 3214944
Score = 40.4 bits (93), Expect = 0.20, Method: Composition-based stats.
Identities = 45/128 (35%), Positives = 59/128 (46%), Gaps = 1/128 (0%)
Frame = -3
Query: 18 RSCVRTACIAA-ARSITARGARCKLSQKPRKLQRKMYHFVTSMWCHRUPLR*SFGNWWUK 76
R+CV ++A A S+ + G R L KPR ++ H V S H PLR*S K
Sbjct: 3067000 RTCVLLIKVSALAFSMRSTGVRFSLLAKPRAANERITHLVGS**NHLMPLR*SLAKI**K 3066821
Query: 77 LW*PSPRLMIAKRVESCGVKSSEYGRVAPKKRVCARLLIKKENWCTRKILSHTTQKNAPN 136
L PSP + AK+ S V S YGR + ++ A LIKK S N P+
Sbjct: 3066820 L*YPSPYVNRAKKPLSRAVFFSVYGR---EPQIWATELIKKVKC*LSTKRSKPASNNMPH 3066650
Query: 137 HSPVVAPA 144
SP P+
Sbjct: 3066649 TSPTSNPS 3066626
>dbj|AK107670.1| Oryza sativa Japonica Group cDNA clone:002-131-H08, full insert
sequence
Length = 1919
Score = 40.4 bits (93), Expect = 0.20, Method: Composition-based stats.
Identities = 27/58 (46%), Positives = 31/58 (53%)
Frame = -3
Query: 44 KPRKLQRKMYHFVTSMWCHRUPLR*SFGNWWUKLW*PSPRLMIAKRVESCGVKSSEYG 101
+P ++ H V S WCH LR*S GN W KLW*PSPR+ A S G S G
Sbjct: 1146 RPICFHIQIDHLVGSYWCHSIALR*SEGNSWWKLW*PSPRVTRAVMTWSRGELRSSKG 973
>ref|XM_001822150.1| Aspergillus oryzae RIB40 hypothetical protein partial mRNA
Length = 1191
Score = 40.4 bits (93), Expect = 0.21, Method: Composition-based stats.
Identities = 44/109 (40%), Positives = 52/109 (47%)
Frame = -2
Query: 54 HFVTSMWCHRUPLR*SFGNWWUKLW*PSPRLMIAKRVESCGVKSSEYGRVAPKKRVCARL 113
HFVTS WCH P R*S GN KL PSPR++ A S GV S YG R CAR
Sbjct: 794 HFVTSTWCHSMPFR*SEGNS**KL*NPSPRVISAVSR*SRGVCRSSYG*WP---R*CARE 624
Query: 114 LIKKENWCTRKILSHTTQKNAPNHSPVVAPATTRGIRIPVMVAITAKYL 162
+K T+ +N P S +PAT +G P+ A YL
Sbjct: 623 FTQKVA*LTKNARRTPA*RNPPVQSFHPSPATRQGSSQPMPKAAKK*YL 477
>gb|AE014299.1| Shewanella oneidensis MR-1, complete genome
Length = 4969803
Score = 40.0 bits (92), Expect = 0.23, Method: Composition-based stats.
Identities = 43/117 (36%), Positives = 53/117 (45%)
Frame = +2
Query: 29 ARSITARGARCKLSQKPRKLQRKMYHFVTSMWCHRUPLR*SFGNWWUKLW*PSPRLMIAK 88
A SI + G K KP + + + H V S H PLR*SF W KLW*PSP + A+
Sbjct: 207503 ALSIRSCGLVRKSLAKPTQDKDFISHLVGS*CHHLMPLR*SFSKIWWKLW*PSP*VSTAR 207682
Query: 89 RVESCGVKSSEYGRVAPKKRVCARLLIKKENWCTRKILSHTTQKNAPNHSPVVAPAT 145
+ S V S G + AR LIKK CT N P PV P++
Sbjct: 207683 KPLSRAVFLSV*GW---QPHT*ARELIKKVQ*CTTTKRRSPAINNMPAIFPVNQPSS 207844
>ref|XM_452447.1| Kluyveromyces lactis NRRL Y-1140, KLLA0C05566g hypothetical protein
partial mRNA
Length = 1434
Score = 40.0 bits (92), Expect = 0.24, Method: Composition-based stats.
Identities = 27/62 (43%), Positives = 32/62 (51%)
Frame = -2
Query: 40 KLSQKPRKLQRKMYHFVTSMWCHRUPLR*SFGNWWUKLW*PSPRLMIAKRVESCGVKSSE 99
K +P K + + V S W H LR*S GN W KLW*PSP++ A S GV S
Sbjct: 1028 KSYDRPNKEVK*IRTLVGSYWYHLIALR*SVGNSWWKLW*PSPKVTKAVIQLSLGVLLSS 849
Query: 100 YG 101
G
Sbjct: 848 KG 843
>emb|CR382123.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome C complete sequence
Length = 1753957
Score = 40.0 bits (92), Expect = 0.24, Method: Composition-based stats.
Identities = 27/62 (43%), Positives = 32/62 (51%)
Frame = +1
Query: 40 KLSQKPRKLQRKMYHFVTSMWCHRUPLR*SFGNWWUKLW*PSPRLMIAKRVESCGVKSSE 99
K +P K + + V S W H LR*S GN W KLW*PSP++ A S GV S
Sbjct: 498283 KSYDRPNKEVK*IRTLVGSYWYHLIALR*SVGNSWWKLW*PSPKVTKAVIQLSLGVLLSS 498462
Query: 100 YG 101
G
Sbjct: 498463 KG 498468
>ref|XM_001834887.1| Coprinopsis cinerea okayama7#130 hypothetical protein (CC1G_11588)
partial mRNA
Length = 606
Score = 39.7 bits (91), Expect = 0.31, Method: Composition-based stats.
Identities = 23/52 (44%), Positives = 27/52 (51%)
Frame = -2
Query: 31 SITARGARCKLSQKPRKLQRKMYHFVTSMWCHRUPLR*SFGNWWUKLW*PSP 82
S + + RC+ +P M H V S W LR*S GNWW KL *PSP
Sbjct: 152 SFSGKTRRCE--ARPSMAHNAMNHLVGSYWYQWKALR*SIGNWWWKL**PSP 3
>emb|X85962.1|HCOLE1G21 H.capsulatum Ole1 gene (strain G217B)
Length = 1881
Score = 39.7 bits (91), Expect = 0.34, Method: Composition-based stats.
Identities = 27/58 (46%), Positives = 32/58 (55%)
Frame = -2
Query: 44 KPRKLQRKMYHFVTSMWCHRUPLR*SFGNWWUKLW*PSPRLMIAKRVESCGVKSSEYG 101
+P Q ++ H V S CH LR*S GN W KLW*PSPR+ A + S G S G
Sbjct: 1019 RPSCFQIQIDHLVGSY*CHSMALR*SEGNSWWKLW*PSPRVTRAVTMWSRGELRSSKG 846
>dbj|AB071696.1| Saccharomyces kluyveri Sk-SDS23 gene and Sk-OLE1 gene for delta
9-fatty acid desaturase, partial and complete cds
Length = 3617
Score = 39.7 bits (91), Expect = 0.37, Method: Composition-based stats.
Identities = 27/62 (43%), Positives = 31/62 (50%)
Frame = -1
Query: 40 KLSQKPRKLQRKMYHFVTSMWCHRUPLR*SFGNWWUKLW*PSPRLMIAKRVESCGVKSSE 99
KL KP + + M V S W H *S GN W KLW*PSP++ A S GV S
Sbjct: 2843 KL*AKPSREEV*MNTLVGSYWYHLMAFL*SVGNSWWKLW*PSPKVTKAVIQLSLGVLLSS 2664
Query: 100 YG 101
G
Sbjct: 2663 NG 2658
>emb|Y18554.1|MAL18554 Mortierella alpina ole2 gene for stearoyl-CoA desaturase
Length = 3342
Score = 39.3 bits (90), Expect = 0.39, Method: Composition-based stats.
Identities = 41/109 (37%), Positives = 49/109 (44%)
Frame = -1
Query: 45 PRKLQRKMYHFVTSMWCHRUPLR*SFGNWWUKLW*PSPRLMIAKRVESCGVKSSEYGRVA 104
P+K + HFV S +R L *S GNWW KLW PSP++ A S GV S G
Sbjct: 2214 PKKAHVAISHFVGSY**NRMALL*SCGNWWWKLWYPSPKVKKAVMK*SRGVWRSSKG--- 2044
Query: 105 PKKRVCARLLIKKENWCTRKILSHTTQKNAPNHSPVVAPATTRGIRIPV 153
P A L +K W T+ K P SP PAT G P+
Sbjct: 2043 PSPSQ*ASELTQKVAWWTKISRRIAA*K*PPRQSPHPRPATAVGKTRPM 1897
>gb|CP000507.1| Shewanella amazonensis SB2B, complete genome
Length = 4306142
Score = 39.3 bits (90), Expect = 0.41, Method: Composition-based stats.
Identities = 43/130 (33%), Positives = 61/130 (46%), Gaps = 2/130 (1%)
Frame = +1
Query: 18 RSCVRTACIAA-ARSITARGARCKLSQKPRKLQRKMYHFVTSMWCHRUPLR*SFGNWWUK 76
R +R +CI + A SI + G K P + + + H V S PLR*SF W K
Sbjct: 219628 RCWLRLSCICSLALSIRSCGTLRKSPANPHQDKPLISHLVGS*SHQWIPLR*SFSKIWWK 219807
Query: 77 LW*PSPRLMIAKRVESCGVKSSEYGRV-APKKRVCARLLIKKENWCTRKILSHTTQKNAP 135
LW*PSP + A S G+ + + V + ++CA LIKK W T + N
Sbjct: 219808 LW*PSP*VKNA----SSGLSRAVFLSV*GCEPQMCASELIKKVQW*TSTKRAKPANSNID 219975
Query: 136 NHSPVVAPAT 145
+ SP P++
Sbjct: 219976 STSP*NQPSS 220005
>ref|XM_001805791.1| Phaeosphaeria nodorum SN15 hypothetical protein partial mRNA
Length = 1537
Score = 39.3 bits (90), Expect = 0.45, Method: Composition-based stats.
Identities = 45/129 (34%), Positives = 58/129 (44%)
Frame = -3
Query: 20 CVRTACIAAARSITARGARCKLSQKPRKLQRKMYHFVTSMWCHRUPLR*SFGNWWUKLW* 79
C R I+ R + + AR K PR+ +R M H V S W LR*S GN W KL
Sbjct: 962 CNRPFSISLDRKVLSEYARGK---GPRE-KR*MSHLVGSYWYQMIALR*SLGNSWWKL*Y 795
Query: 80 PSPRLMIAKRVESCGVKSSEYGRVAPKKRVCARLLIKKENWCTRKILSHTTQKNAPNHSP 139
PSP + A + S GV+ S G +P + CAR + T+ P+ SP
Sbjct: 794 PSPIVTNAVKTWSRGVRLSSNG-CSPIQ--CAREFTQNVACWTKHARMMPA*TRPPHQSP 624
Query: 140 VVAPATTRG 148
PAT G
Sbjct: 623 HPRPATIMG 597
>ref|XM_363864.1| Magnaporthe grisea 70-15 conserved hypothetical protein (MGG_01790)
partial mRNA
Length = 1428
Score = 38.9 bits (89), Expect = 0.50, Method: Composition-based stats.
Identities = 23/48 (47%), Positives = 28/48 (58%)
Frame = -2
Query: 40 KLSQKPRKLQRKMYHFVTSMWCHRUPLR*SFGNWWUKLW*PSPRLMIA 87
+L +P Q ++ H V S W H LR*S GN W KLW PSPR+ A
Sbjct: 935 RLWARPSCFQIQIDHLVGSYWYHSIALR*SEGNSWWKLWYPSPRVTRA 792
>gb|AE017340.1| Idiomarina loihiensis L2TR, complete genome
Length = 2839318
Score = 38.9 bits (89), Expect = 0.51, Method: Composition-based stats.
Identities = 43/124 (34%), Positives = 53/124 (42%), Gaps = 1/124 (0%)
Frame = -1
Query: 22 RTACIAA-ARSITARGARCKLSQKPRKLQRKMYHFVTSMWCHRUPLR*SFGNWWUKLW*P 80
R CI + ARS R K +P L + H V S R PLR*S W LW*P
Sbjct: 293929 RFNCICSFARST*YGELRFKFFARPSHLLATISHLVGSNCHQRIPLR*SAAKMWW*LW*P 293750
Query: 81 SPRLMIAKRVESCGVKSSEYGRVAPKKRVCARLLIKKENWCTRKILSHTTQKNAPNHSPV 140
SP + A S V S G + ++CA LIKK W + N + SP
Sbjct: 293749 SPNVRNASTPLSRAVFLSV*GCLP---QICASELIKKVVWWFSTRRNTPITNNPAHTSPS 293579
Query: 141 VAPA 144
+ PA
Sbjct: 293578 MKPA 293567
>emb|CU468230.2| Acinetobacter baumannii str. SDF, complete genome
Length = 3421954
Score = 38.9 bits (89), Expect = 0.58, Method: Composition-based stats.
Identities = 29/68 (42%), Positives = 36/68 (52%)
Frame = +2
Query: 36 GARCKLSQKPRKLQRKMYHFVTSMWCHRUPLR*SFGNWWUKLW*PSPRLMIAKRVESCGV 95
G R + KP +M HFV S H PLR*S+ W LW*PSP++ IA + S
Sbjct: 512798 GIRRRFFAKPILEHVQMSHFVGSYCHHFTPLR*SYWKIW**LW*PSPQVAIANQKLSRAE 512977
Query: 96 KSSEYGRV 103
SS GR+
Sbjct: 512978 FSSV*GRL 513001
>gb|CP000521.1| Acinetobacter baumannii ATCC 17978, complete genome
Length = 3976747
Score = 38.9 bits (89), Expect = 0.58, Method: Composition-based stats.
Identities = 29/68 (42%), Positives = 36/68 (52%)
Frame = -2
Query: 36 GARCKLSQKPRKLQRKMYHFVTSMWCHRUPLR*SFGNWWUKLW*PSPRLMIAKRVESCGV 95
G R + KP +M HFV S H PLR*S+ W LW*PSP++ IA + S
Sbjct: 3330378 GIRRRFFAKPILEHVQMSHFVGSYCHHFTPLR*SYWKIW**LW*PSPQVAIANQKLSRAE 3330199
Query: 96 KSSEYGRV 103
SS GR+
Sbjct: 3330198 FSSV*GRL 3330175
>ref|XM_001826811.1| Aspergillus oryzae RIB40 hypothetical protein partial mRNA
Length = 1602
Score = 38.9 bits (89), Expect = 0.60, Method: Composition-based stats.
Identities = 26/66 (39%), Positives = 31/66 (46%)
Frame = -2
Query: 18 RSCVRTACIAAARSITARGARCKLSQKPRKLQRKMYHFVTSMWCHRUPLR*SFGNWWUKL 77
RS AC T GA K +P +++H VTS W H L *S GN W L
Sbjct: 821 RSSFFRACWYVPLPTTLSGAFFKPYARPSCFHTQIHHLVTSHWYHSTTL**SAGNSWW*L 642
Query: 78 W*PSPR 83
W PSP+
Sbjct: 641 WYPSPK 624
>gb|AY693010.1| Saccharomyces cerevisiae clone FLH112791.01X YGL055W gene, complete
cds
Length = 1533
Score = 38.9 bits (89), Expect = 0.60, Method: Composition-based stats.
Identities = 26/60 (43%), Positives = 31/60 (51%)
Frame = -2
Query: 44 KPRKLQRKMYHFVTSMWCHRUPLR*SFGNWWUKLW*PSPRLMIAKRVESCGVKSSEYGRV 103
+P K + M V S W H *S GN W KLW*PSP++ +A S GV S G V
Sbjct: 1106 RPTKEVK*MITLVGSYWYHLIAFL*SVGNSWWKLW*PSPKVTMAVIQLSRGVLLSSNGWV 927
>emb|Z72577.1|SCYGL055W S.cerevisiae chromosome VII reading frame ORF YGL055w
Length = 4582
Score = 38.9 bits (89), Expect = 0.60, Method: Composition-based stats.
Identities = 26/60 (43%), Positives = 31/60 (51%)
Frame = -1
Query: 44 KPRKLQRKMYHFVTSMWCHRUPLR*SFGNWWUKLW*PSPRLMIAKRVESCGVKSSEYGRV 103
+P K + M V S W H *S GN W KLW*PSP++ +A S GV S G V
Sbjct: 3445 RPTKEVK*MITLVGSYWYHLIAFL*SVGNSWWKLW*PSPKVTMAVIQLSRGVLLSSNGWV 3266
>gb|J05676.1|YSCOLE1 Saccharomyces cerevisiae delta-9 fatty acid desaturase (OLE1) gene,
complete cds
Length = 2267
Score = 38.9 bits (89), Expect = 0.60, Method: Composition-based stats.
Identities = 26/60 (43%), Positives = 31/60 (51%)
Frame = -1
Query: 44 KPRKLQRKMYHFVTSMWCHRUPLR*SFGNWWUKLW*PSPRLMIAKRVESCGVKSSEYGRV 103
+P K + M V S W H *S GN W KLW*PSP++ +A S GV S G V
Sbjct: 1451 RPTKEVK*MITLVGSYWYHLIAFL*SVGNSWWKLW*PSPKVTMAVIQLSRGVLLSSNGWV 1272
>ref|XM_956731.2| Neurospora crassa OR74A acyl-CoA desaturase 1 partial mRNA
Length = 2036
Score = 38.5 bits (88), Expect = 0.64, Method: Composition-based stats.
Identities = 26/58 (44%), Positives = 30/58 (51%)
Frame = -1
Query: 44 KPRKLQRKMYHFVTSMWCHRUPLR*SFGNWWUKLW*PSPRLMIAKRVESCGVKSSEYG 101
+P Q +M+H V S H LR S GN W KLW*PSPR+ A S G S G
Sbjct: 1073 RPSCFQTQMHHLVGSYCHHSIALRKSLGNSWWKLW*PSPRVTRAVMT*SLGELRSSKG 900
>emb|CR543861.1| Acinetobacter sp. ADP1 complete genome
Length = 3598621
Score = 38.5 bits (88), Expect = 0.71, Method: Composition-based stats.
Identities = 41/123 (33%), Positives = 53/123 (43%)
Frame = +2
Query: 36 GARCKLSQKPRKLQRKMYHFVTSMWCHRUPLR*SFGNWWUKLW*PSPRLMIAKRVESCGV 95
G R K P Q ++ HFV S H P R*S+ LW*PSP + IA + S V
Sbjct: 619376 GIRRKFLASPSFEQLQINHFVGSYCHHFTPFR*SY*KM***LW*PSPHVAIASQKLSRAV 619555
Query: 96 KSSEYGRVAPKKRVCARLLIKKENWCTRKILSHTTQKNAPNHSPVVAPATTRGIRIPVMV 155
SS YGR+ + L+K + S K P SP P +++ V
Sbjct: 619556 FSSVYGRLP---HIWQSELMKNVT**LKISRSKPPSKTTPQISPTAQPT---AVKMTTCV 619717
Query: 156 AIT 158
AIT
Sbjct: 619718 AIT 619726
>emb|CR380955.2| Candida glabrata strain CBS138 chromosome I complete sequence
Length = 1100349
Score = 38.5 bits (88), Expect = 0.73, Method: Composition-based stats.
Identities = 25/58 (43%), Positives = 29/58 (50%)
Frame = -2
Query: 44 KPRKLQRKMYHFVTSMWCHRUPLR*SFGNWWUKLW*PSPRLMIAKRVESCGVKSSEYG 101
KP K + + V S W H *S GN W KLW PSP++ IA S GV S G
Sbjct: 31094 KPNKEVK*IKTLVGSYWYHLIAFL*SDGNSWWKLWYPSPKVTIAVIQLSLGVLLSSNG 30921
>ref|XM_447271.1| Candida glabrata CBS138 hypothetical protein (CAGL0I00418g) partial
mRNA
Length = 1473
Score = 38.5 bits (88), Expect = 0.73, Method: Composition-based stats.
Identities = 25/58 (43%), Positives = 29/58 (50%)
Frame = -2
Query: 44 KPRKLQRKMYHFVTSMWCHRUPLR*SFGNWWUKLW*PSPRLMIAKRVESCGVKSSEYG 101
KP K + + V S W H *S GN W KLW PSP++ IA S GV S G
Sbjct: 1037 KPNKEVK*IKTLVGSYWYHLIAFL*SDGNSWWKLWYPSPKVTIAVIQLSLGVLLSSNG 864
>gb|CP000510.1| Psychromonas ingrahamii 37, complete genome
Length = 4559598
Score = 38.5 bits (88), Expect = 0.74, Method: Composition-based stats.
Identities = 30/76 (39%), Positives = 37/76 (48%)
Frame = -1
Query: 45 PRKLQRKMYHFVTSMWCHRUPLR*SFGNWWUKLW*PSPRLMIAKRVESCGVKSSEYGRVA 104
PR Q + H V S R P R*SF W KLW*PSP++ AK+ S +
Sbjct: 1842174 PRYSQLFINHLVGSNCHQRIPFR*SFSKIW*KLW*PSPKVRKAKKPLS---LALFLSL*V 1842004
Query: 105 PKKRVCARLLIKKENW 120
++CA LIKK W
Sbjct: 1842003 CFPQICANELIKKVVW 1841956
>ref|XM_001879546.1| Laccaria bicolor S238N-H82 delta 9-fatty acid desaturase protein
partial mRNA
Length = 1386
Score = 38.5 bits (88), Expect = 0.78, Method: Composition-based stats.
Identities = 37/115 (32%), Positives = 49/115 (42%)
Frame = -2
Query: 44 KPRKLQRKMYHFVTSMWCHRUPLR*SFGNWWUKLW*PSPRLMIAKRVESCGVKSSEYGRV 103
+P Q M H V S W R*S GNW KLW PSP + +A+R S G +S G
Sbjct: 812 RPSIPQSAMNHLVGSYWYQWNAFR*SIGNW**KLWYPSPIVSMAERKWSRGE*TSS*G-- 639
Query: 104 APKKRVCARLLIKKENWCTRKILSHTTQKNAPNHSPVVAPATTRGIRIPVMVAIT 158
+ A L++ W + PN S + P T G IP + + T
Sbjct: 638 -AEPSQ*ATELMQNVLW*AMVKRKANAKHMPPNQSSHIKPGITAGRTIPKIASRT 477
>ref|XM_001224011.1| Chaetomium globosum CBS 148.51 hypothetical protein (CHGG_04798)
partial mRNA
Length = 1428
Score = 38.5 bits (88), Expect = 0.78, Method: Composition-based stats.
Identities = 37/102 (36%), Positives = 46/102 (45%)
Frame = -2
Query: 25 CIAAARSITARGARCKLSQKPRKLQRKMYHFVTSMWCHRUPLR*SFGNWWUKLW*PSPRL 84
C SI+ G +L +P +M H V S H LR S GN W KLW*PSPR+
Sbjct: 980 CWTRPFSISFWGKVFRL*ARPSCFMVQMNHLVGSYCHHSIALRKSLGNSWWKLW*PSPRV 801
Query: 85 MIAKRVESCGVKSSEYGRVAPKKRVCARLLIKKENWCTRKIL 126
A S G S G + A+LL +K +KIL
Sbjct: 800 TRAVMT*SLGELRSSKGWSPSQ---WAKLLTQKVACWMKKIL 684
>gb|CP001133.1| Vibrio fischeri MJ11 chromosome II, complete sequence
Length = 1418848
Score = 38.1 bits (87), Expect = 0.86, Method: Composition-based stats.
Identities = 48/133 (36%), Positives = 63/133 (47%), Gaps = 1/133 (0%)
Frame = +3
Query: 27 AAARSITARGARCKLSQKPRKLQRKMYHFVTSMWCHR-UPLR*SFGNWWUKLW*PSPRLM 85
A A SI A G L +P Q + HFV S +CH+ P R*SF W L *PSP++
Sbjct: 347682 AFAFSIFACGLIRSL*ARPSHEQVLINHFVGS-YCHQ*IPFR*SFSKMWW*L**PSPKVK 347858
Query: 86 IAKRVESCGVKSSEYGRVAPKKRVCARLLIKKENWCTRKILSHTTQKNAPNHSPVVAPAT 145
IAK+ S V S G + ++ A LIK W + + P SP + P
Sbjct: 347859 IAKKPLSRAVFFSV*G---*EPQI*ANELIKNVVW*LNAKRTAPIINSIPMISP*ITP-N 348026
Query: 146 TRGIRIPVMVAIT 158
RG+ I +M A T
Sbjct: 348027 NRGMPIFIMSAKT 348065
>gb|AE016814.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome I,
complete sequence
Length = 691920
Score = 38.1 bits (87), Expect = 0.94, Method: Composition-based stats.
Identities = 27/74 (36%), Positives = 35/74 (47%)
Frame = -1
Query: 19 SCVRTACIAAARSITARGARCKLSQKPRKLQRKMYHFVTSMWCHRUPLR*SFGNWWUKLW 78
S + C SI + A C +PR R + HF S P R*S GN W KLW
Sbjct: 210951 SSIFCCCCTLHMSIWSLEALCI*CTRPRCPIRLIAHFAGSKAYQAGPFR*SPGNSWWKLW 210772
Query: 79 *PSPRLMIAKRVES 92
SP++M R++S
Sbjct: 210771 FDSPKVMT*ARIDS 210730
Score = 38.1 bits (87), Expect = 0.98, Method: Composition-based stats.
Identities = 31/66 (46%), Positives = 35/66 (53%)
Frame = +1
Query: 52 MYHFVTSMWCHRUPLR*SFGNWWUKLW*PSPRLMIAKRVESCGVKSSEYGRVAPKKRVCA 111
M V S W R R*S GN W KLW*PSPR+ A S GV+ S G R CA
Sbjct: 620401 MNTLVGSYWYQRMAFR*SVGNSWWKLW*PSPRVTRAVIQLSRGVRRSSNGW---SPR*CA 620571
Query: 112 RLLIKK 117
R L++K
Sbjct: 620572 RELMQK 620589
>ref|NM_207817.1| Ashbya gossypii ATCC 10895 hypothetical protein AAL078Wp
(AGOS_AAL078W) partial mRNA
Length = 1779
Score = 38.1 bits (87), Expect = 0.94, Method: Composition-based stats.
Identities = 27/74 (36%), Positives = 35/74 (47%)
Frame = -2
Query: 19 SCVRTACIAAARSITARGARCKLSQKPRKLQRKMYHFVTSMWCHRUPLR*SFGNWWUKLW 78
S + C SI + A C +PR R + HF S P R*S GN W KLW
Sbjct: 1352 SSIFCCCCTLHMSIWSLEALCI*CTRPRCPIRLIAHFAGSKAYQAGPFR*SPGNSWWKLW 1173
Query: 79 *PSPRLMIAKRVES 92
SP++M R++S
Sbjct: 1172 FDSPKVMT*ARIDS 1131
>ref|NM_208049.1| Ashbya gossypii ATCC 10895 hypothetical protein AAR153Cp
(AGOS_AAR153C) partial mRNA
Length = 1437
Score = 38.1 bits (87), Expect = 0.98, Method: Composition-based stats.
Identities = 31/66 (46%), Positives = 35/66 (53%)
Frame = -2
Query: 52 MYHFVTSMWCHRUPLR*SFGNWWUKLW*PSPRLMIAKRVESCGVKSSEYGRVAPKKRVCA 111
M V S W R R*S GN W KLW*PSPR+ A S GV+ S G R CA
Sbjct: 989 MNTLVGSYWYQRMAFR*SVGNSWWKLW*PSPRVTRAVIQLSRGVRRSSNGW---SPR*CA 819
Query: 112 RLLIKK 117
R L++K
Sbjct: 818 RELMQK 801
>dbj|AB195980.1| Mortierella alpina gene for omega9 fatty acid desaturase, complete
cds
Length = 1432
Score = 37.4 bits (85), Expect = 1.5, Method: Composition-based stats.
Identities = 34/92 (36%), Positives = 42/92 (45%)
Frame = -2
Query: 32 ITARGARCKLSQKPRKLQRKMYHFVTSMWCHRUPLR*SFGNWWUKLW*PSPRLMIAKRVE 91
I+ G + P+K + H V S W R L *S+GNW KLW PSPR+ A
Sbjct: 1035 ISFSGKVLRCEANPKKAHVAISHLVGSYW*KRMALL*SWGNW*WKLWYPSPRVKKAVMKW 856
Query: 92 SCGVKSSEYGRVAPKKRVCARLLIKKENWCTR 123
S GV S G P A L +K W T+
Sbjct: 855 SRGVWRSSKG---PSPSQ*ASELTQKVAWWTK 769
>gb|CP001172.1| Acinetobacter baumannii AB307-0294, complete genome
Length = 3760981
Score = 37.4 bits (85), Expect = 1.6, Method: Composition-based stats.
Identities = 28/68 (41%), Positives = 36/68 (52%)
Frame = +1
Query: 36 GARCKLSQKPRKLQRKMYHFVTSMWCHRUPLR*SFGNWWUKLW*PSPRLMIAKRVESCGV 95
G R + KP ++ HFV S H PLR*S+ W LW*PSP++ IA + S
Sbjct: 610921 GIRRRFFAKPILEHVQISHFVGSYCHHFTPLR*SYWKIW**LW*PSPQVAIANQKLSRAE 611100
Query: 96 KSSEYGRV 103
SS GR+
Sbjct: 611101 FSSV*GRL 611124
>gb|CP001182.1| Acinetobacter baumannii AB0057, complete genome
Length = 4050513
Score = 37.4 bits (85), Expect = 1.6, Method: Composition-based stats.
Identities = 28/68 (41%), Positives = 36/68 (52%)
Frame = -3
Query: 36 GARCKLSQKPRKLQRKMYHFVTSMWCHRUPLR*SFGNWWUKLW*PSPRLMIAKRVESCGV 95
G R + KP ++ HFV S H PLR*S+ W LW*PSP++ IA + S
Sbjct: 3490501 GIRRRFFAKPILEHVQISHFVGSYCHHFTPLR*SYWKIW**LW*PSPQVAIANQKLSRAE 3490322
Query: 96 KSSEYGRV 103
SS GR+
Sbjct: 3490321 FSSV*GRL 3490298
>emb|CU459141.1| Acinetobacter baumannii str. AYE, complete genome
Length = 3936291
Score = 37.4 bits (85), Expect = 1.6, Method: Composition-based stats.
Identities = 28/68 (41%), Positives = 36/68 (52%)
Frame = +1
Query: 36 GARCKLSQKPRKLQRKMYHFVTSMWCHRUPLR*SFGNWWUKLW*PSPRLMIAKRVESCGV 95
G R + KP ++ HFV S H PLR*S+ W LW*PSP++ IA + S
Sbjct: 612190 GIRRRFFAKPILEHVQISHFVGSYCHHFTPLR*SYWKIW**LW*PSPQVAIANQKLSRAE 612369
Query: 96 KSSEYGRV 103
SS GR+
Sbjct: 612370 FSSV*GRL 612393
>gb|CP000790.1| Vibrio harveyi ATCC BAA-1116 chromosome II, complete sequence
Length = 2204018
Score = 37.4 bits (85), Expect = 1.6, Method: Composition-based stats.
Identities = 49/139 (35%), Positives = 63/139 (45%), Gaps = 1/139 (0%)
Frame = -3
Query: 25 CIAAARSITARGARCKLSQKPRKLQRKMYHFVTSMWCHR-UPLR*SFGNWWUKLW*PSPR 83
C+A A S+ KP + Q + H V S CH+ PLR*SF KLW*PSP+
Sbjct: 1258296 CVARAFSMRNVDVVRSFVVKPNQEQDLISHLVGS*-CHQ*TPLR*SFSKM*WKLW*PSPK 1258120
Query: 84 LMIAKRVESCGVKSSEYGRVAPKKRVCARLLIKKENWCTRKILSHTTQKNAPNHSPVVAP 143
+ AK S V S + CA LIKK + + T +N P SP + P
Sbjct: 1258119 VKNAKMPLSRAVFLSVK---VCLPQTCANELIKKVV*WLKNRRAAPTIRNIPQISP*IRP 1257949
Query: 144 ATTRGIRIPVMVAITAKYL 162
+ RG I V +A YL
Sbjct: 1257948 -SKRGKPILVTIAKGT*YL 1257895
>dbj|BA000032.2| Vibrio parahaemolyticus RIMD 2210633 DNA, chromosome 2, complete sequence
Length = 1877212
Score = 37.4 bits (85), Expect = 1.6, Method: Composition-based stats.
Identities = 43/122 (35%), Positives = 55/122 (45%), Gaps = 1/122 (0%)
Frame = +3
Query: 26 IAAARSITARGARCKLSQKPRKLQRKMYHFVTSMWCHR-UPLR*SFGNWWUKLW*PSPRL 84
+A A SI L P + Q + H V S CH+ PLR*SF W KLW*PSP++
Sbjct: 733596 VARAFSIRKVDVVRSLDVSPNQEQDLISHLVGS*-CHQ*TPLR*SFSKMW*KLW*PSPKV 733772
Query: 85 MIAKRVESCGVKSSEYGRVAPKKRVCARLLIKKENWCTRKILSHTTQKNAPNHSPVVAPA 144
AK S V S + CA+ LIKK + + T + P SP + P
Sbjct: 733773 KKAKTPLSRAVFLSVK---VCLPQTCAKELIKKVV*WLKNRRAAPTTSSIPQTSP*IRPK 733943
Query: 145 TT 146
T
Sbjct: 733944 AT 733949
>dbj|AB024576.1| Pichia angusta H-OLE1 gene for delta9-fatty acid desaturase, complete
cds
Length = 3371
Score = 37.4 bits (85), Expect = 1.7, Method: Composition-based stats.
Identities = 25/62 (40%), Positives = 31/62 (50%)
Frame = -1
Query: 40 KLSQKPRKLQRKMYHFVTSMWCHRUPLR*SFGNWWUKLW*PSPRLMIAKRVESCGVKSSE 99
+L P +R + V S W H *S GN W KLW PSP++ A R+ S GV S
Sbjct: 2018 RLYASPTLERR*ITTLVGSYWYHLRAFL*SDGNSWWKLWYPSPKVTRAVRMWSLGVLLSS 1839
Query: 100 YG 101
G
Sbjct: 1838 NG 1833
>gb|CP000446.1| Shewanella sp. MR-4, complete genome
Length = 4706287
Score = 37.4 bits (85), Expect = 1.7, Method: Composition-based stats.
Identities = 45/124 (36%), Positives = 58/124 (46%), Gaps = 1/124 (0%)
Frame = +1
Query: 23 TACIAA-ARSITARGARCKLSQKPRKLQRKMYHFVTSMWCHRUPLR*SFGNWWUKLW*PS 81
++CI A SI + G K KP + + H V S H PLR*SF W KL *PS
Sbjct: 197086 SSCICKRALSIRSCGLVRKSVAKPTQDNALINHLVGS*CHHLMPLR*SFSKIWWKL**PS 197265
Query: 82 PRLMIAKRVESCGVKSSEYGRVAPKKRVCARLLIKKENWCTRKILSHTTQKNAPNHSPVV 141
P + IA++ S V S G + AR L+KK CT S+ N P PV
Sbjct: 197266 P*VNIARKPLSRAVFLSV*GWLP---HTWARELMKKVQ*CTTTKRSNPAISNMPAILPVN 197436
Query: 142 APAT 145
P++
Sbjct: 197437 QPSS 197448
>gb|CP000863.1| Acinetobacter baumannii ACICU, complete genome
Length = 3904116
Score = 37.0 bits (84), Expect = 1.9, Method: Composition-based stats.
Identities = 28/68 (41%), Positives = 36/68 (52%)
Frame = -1
Query: 36 GARCKLSQKPRKLQRKMYHFVTSMWCHRUPLR*SFGNWWUKLW*PSPRLMIAKRVESCGV 95
G R + KP ++ HFV S H PLR*S+ W LW*PSP++ IA + S
Sbjct: 3327924 GIRRRFFAKPILEHVQISHFVGSYCHHFTPLR*SYWKIW**LW*PSPQVAIANQKLSRAE 3327745
Query: 96 KSSEYGRV 103
SS GR+
Sbjct: 3327744 FSSV*GRL 3327721
>ref|XM_001383175.1| Pichia stipitis CBS 6054 stearoyl-CoA desaturase partial mRNA
Length = 1757
Score = 37.0 bits (84), Expect = 2.0, Method: Composition-based stats.
Identities = 24/62 (38%), Positives = 30/62 (48%)
Frame = -1
Query: 40 KLSQKPRKLQRKMYHFVTSMWCHRUPLR*SFGNWWUKLW*PSPRLMIAKRVESCGVKSSE 99
K +P + ++ V S W H *S GN W KLW*PSP++ A S GV S
Sbjct: 1130 KFQARPSLDKTQITILVGSYWYHLRAFL*SDGNSWWKLW*PSPKVNTAVNA*SLGVLLSS 951
Query: 100 YG 101
G
Sbjct: 950 NG 945
>gb|CP000496.1| Pichia stipitis CBS 6054 chromosome 2, complete sequence
Length = 2740984
Score = 37.0 bits (84), Expect = 2.0, Method: Composition-based stats.
Identities = 24/62 (38%), Positives = 30/62 (48%)
Frame = +1
Query: 40 KLSQKPRKLQRKMYHFVTSMWCHRUPLR*SFGNWWUKLW*PSPRLMIAKRVESCGVKSSE 99
K +P + ++ V S W H *S GN W KLW*PSP++ A S GV S
Sbjct: 2399893 KFQARPSLDKTQITILVGSYWYHLRAFL*SDGNSWWKLW*PSPKVNTAVNA*SLGVLLSS 2400072
Query: 100 YG 101
G
Sbjct: 2400073 NG 2400078
>gb|AE017350.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 10, complete
sequence
Length = 1085720
Score = 37.0 bits (84), Expect = 2.3, Method: Composition-based stats.
Identities = 25/59 (42%), Positives = 29/59 (49%)
Frame = +3
Query: 36 GARCKLSQKPRKLQRKMYHFVTSMWCHRUPLR*SFGNWWUKLW*PSPRLMIAKRVESCG 94
G R K +P +M H V S W H R S GN W KLW*PSP + A + S G
Sbjct: 332262 GKRFK*EARPS*DMVQMNHLVGSYWNHLIAFRKS*GN*WWKLW*PSPMVQRAVMIWSRG 332438
>gb|CP001252.1| Shewanella baltica OS223, complete genome
Length = 5145902
Score = 37.0 bits (84), Expect = 2.4, Method: Composition-based stats.
Identities = 43/125 (34%), Positives = 57/125 (45%), Gaps = 1/125 (0%)
Frame = -2
Query: 21 VRTACIAA-ARSITARGARCKLSQKPRKLQRKMYHFVTSMWCHRUPLR*SFGNWWUKLW* 79
VR++CI A SI + G K P + + H V S H PLR*SF KLW*
Sbjct: 4846858 VRSSCICKRALSIRSCGLVRKSLANPNQDNDLINHLVGS*CHHLMPLR*SFSKM*WKLW* 4846679
Query: 80 PSPRLMIAKRVESCGVKSSEYGRVAPKKRVCARLLIKKENWCTRKILSHTTQKNAPNHSP 139
PSP + +A++ S V S G + A+ L+KK CT S N + SP
Sbjct: 4846678 PSP*VSMARKPLSRAVFLSV*GWLP---HTWAKELMKKVQ*CTTTKRSKPAINNIDSTSP 4846508
Query: 140 VVAPA 144
P+
Sbjct: 4846507 FSQPS 4846493
>gb|CP000891.1| Shewanella baltica OS195, complete genome
Length = 5347283
Score = 37.0 bits (84), Expect = 2.4, Method: Composition-based stats.
Identities = 43/125 (34%), Positives = 57/125 (45%), Gaps = 1/125 (0%)
Frame = +1
Query: 21 VRTACIAA-ARSITARGARCKLSQKPRKLQRKMYHFVTSMWCHRUPLR*SFGNWWUKLW* 79
VR++CI A SI + G K P + + H V S H PLR*SF KLW*
Sbjct: 216481 VRSSCICKRALSIRSCGLVRKSLANPNQDNDLINHLVGS*CHHLMPLR*SFSKM*WKLW* 216660
Query: 80 PSPRLMIAKRVESCGVKSSEYGRVAPKKRVCARLLIKKENWCTRKILSHTTQKNAPNHSP 139
PSP + +A++ S V S G + A+ L+KK CT S N + SP
Sbjct: 216661 PSP*VSMARKPLSRAVFLSV*GWLP---HTWAKELMKKVQ*CTTTKRSKPAINNIDSTSP 216831
Query: 140 VVAPA 144
P+
Sbjct: 216832 FSQPS 216846
>gb|CP000563.1| Shewanella baltica OS155, complete genome
Length = 5127376
Score = 36.6 bits (83), Expect = 2.6, Method: Composition-based stats.
Identities = 43/125 (34%), Positives = 57/125 (45%), Gaps = 1/125 (0%)
Frame = -1
Query: 21 VRTACIAA-ARSITARGARCKLSQKPRKLQRKMYHFVTSMWCHRUPLR*SFGNWWUKLW* 79
VR++CI A SI + G K P + + H V S H PLR*SF KLW*
Sbjct: 4895668 VRSSCICKRALSIRSCGLVRKSLANPNQDNDLINHLVGS*CHHLMPLR*SFSKM*WKLW* 4895489
Query: 80 PSPRLMIAKRVESCGVKSSEYGRVAPKKRVCARLLIKKENWCTRKILSHTTQKNAPNHSP 139
PSP + +A++ S V S G + A+ L+KK CT S N + SP
Sbjct: 4895488 PSP*VNMARKPLSRAVFLSV*GWLP---HTWAKELMKKVQ*CTTTKRSKPAINNIDSTSP 4895318
Query: 140 VVAPA 144
P+
Sbjct: 4895317 FSQPS 4895303
>emb|AL111134.1|CNS0193B Botrytis cinerea strain T4 cDNA library
Length = 720
Score = 36.2 bits (82), Expect = 4.1, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Frame = -2
Query: 44 KPRKLQRKMYHFVTSMWCHRUPLR*SFGNWWUKLW*PSPRLMIA 87
+P +M H V S CH LR*S GN KLW*PSPR+ A
Sbjct: 149 RPSCFHIQMDHLVGSY*CHSIALR*SEGNS*WKLW*PSPRVTRA 18
>dbj|D83185.1| Pichia angusta DNA for delta 9-fatty acid desaturase, complete cds
Length = 2251
Score = 35.8 bits (81), Expect = 4.7, Method: Composition-based stats.
Identities = 25/62 (40%), Positives = 30/62 (48%)
Frame = -1
Query: 40 KLSQKPRKLQRKMYHFVTSMWCHRUPLR*SFGNWWUKLW*PSPRLMIAKRVESCGVKSSE 99
+L P +R + V S W H *S GN W KLW PSP++ A R S GV S
Sbjct: 1435 RL*ASPTLDRR*ITTLVGSYWYHLSAFL*SDGNSWWKLWYPSPKVTRAVRTWSLGVLLSS 1256
Query: 100 YG 101
G
Sbjct: 1255 NG 1250
>gb|CP000021.2| Vibrio fischeri ES114 chromosome II, complete sequence
Length = 1330333
Score = 35.8 bits (81), Expect = 4.7, Method: Composition-based stats.
Identities = 29/63 (46%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Frame = +2
Query: 27 AAARSITARGARCKLSQKPRKLQRKMYHFVTSMWCHR-UPLR*SFGNWWUKLW*PSPRLM 85
A A SI A G L +P Q + HFV S +CH+ P R*SF W L *PSP++
Sbjct: 304589 ALAFSIFACGLTRSL*ARPSNEQVLINHFVGS-YCHQ*IPFR*SFSKMWW*L**PSPKVK 304765
Query: 86 IAK 88
IAK
Sbjct: 304766 IAK 304774
>gb|AC232887.1| Oryza officinalis clone OO__Ba0042E14, complete sequence
Length = 106977
Score = 35.8 bits (81), Expect = 5.3, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = +2
Query: 3 GTSSRLTSFAASTNPRSCVRTACIAAARSITARGARCKLSQKPR 46
GT L +F TNPR C+RT+ I +++T + CKL+ R
Sbjct: 78824 GTGLHLCAFVFRTNPRFCLRTSFIDFWQNLTKKAGHCKLTNSSR 78955
>gb|AC217194.1| Oryza minuta clone OM__Ba0116F20, complete sequence
Length = 131152
Score = 35.8 bits (81), Expect = 5.3, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = +2
Query: 3 GTSSRLTSFAASTNPRSCVRTACIAAARSITARGARCKLSQKPR 46
GT L +F TNPR C+RT+ I +++T + CKL+ R
Sbjct: 54314 GTGLHLCAFVFRTNPRFCLRTSFIDFWQNLTKKAGHCKLTNSSR 54445
>gb|CP000713.1| Psychrobacter sp. PRwf-1, complete genome
Length = 2978976
Score = 35.4 bits (80), Expect = 5.9, Method: Composition-based stats.
Identities = 38/123 (30%), Positives = 52/123 (42%), Gaps = 1/123 (0%)
Frame = -3
Query: 22 RTACIAAARSITARGARCKLSQ-KPRKLQRKMYHFVTSMWCHRUPLR*SFGNWWUKLW*P 80
R CI + + + + S+ KP + HFV S H PLR*S+ W L *P
Sbjct: 1559755 RLNCICTSACLIVISSTVRSSEAKPNFANAAINHFVGSYCHHLTPLR*SYWKKW**L**P 1559576
Query: 81 SPRLMIAKRVESCGVKSSEYGRVAPKKRVCARLLIKKENWCTRKILSHTTQKNAPNHSPV 140
SP++ +A S V S GRV + + LIKK W + P SP+
Sbjct: 1559575 SPQVGMASMKLSRAVLVSV*GRVP---YIWHKELIKKVKWWLMTKRTRPASNKVPQTSPI 1559405
Query: 141 VAP 143
P
Sbjct: 1559404 SQP 1559396
>gb|CP000472.1| Shewanella piezotolerans WP3, complete genome
Length = 5396476
Score = 35.0 bits (79), Expect = 8.6, Method: Composition-based stats.
Identities = 43/125 (34%), Positives = 56/125 (44%), Gaps = 2/125 (1%)
Frame = +3
Query: 21 VRTACIAA-ARSITARGARCKLSQKPRKLQRKMYHFVTSMWCHR-UPLR*SFGNWWUKLW 78
VR +CI A SI + G +L P + + H V S +CH+ PLR*SF W LW
Sbjct: 216408 VRLSCICKRALSIRSCGTTRRLLVSPTNAKPSINHLVGS-YCHQ*MPLR*SFSKMWW*LW 216584
Query: 79 *PSPRLMIAKRVESCGVKSSEYGRVAPKKRVCARLLIKKENWCTRKILSHTTQKNAPNHS 138
PSP + A + S V S YG + + A L+K CT S + P S
Sbjct: 216585 YPSP*VSSAIKPLSRAVFLSVYG---CEPHI*ASELMKNVQ*CTTTRRSRPASSSMPRMS 216755
Query: 139 PVVAP 143
P P
Sbjct: 216756 PFNQP 216770
>gb|CP000931.1| Shewanella halifaxensis HAW-EB4, complete genome
Length = 5226917
Score = 35.0 bits (79), Expect = 8.6, Method: Composition-based stats.
Identities = 44/125 (35%), Positives = 59/125 (47%), Gaps = 2/125 (1%)
Frame = -3
Query: 21 VRTACIA-AARSITARGARCKLSQKPRKLQRKMYHFVTSMWCHR-UPLR*SFGNWWUKLW 78
VR +CI A SI + G +LS + + + H V S +CH+ PLR*SF W LW
Sbjct: 5058117 VRLSCICNRAYSIRSCGTTRRLSANLIQAKVLISHLVGS-YCHQWIPLR*SFSKIW**LW 5057941
Query: 79 *PSPRLMIAKRVESCGVKSSEYGRVAPKKRVCARLLIKKENWCTRKILSHTTQKNAPNHS 138
*PSP + A + S V S G + + CA L+KK CT ++ P S
Sbjct: 5057940 *PSP*VNSAMKPLSRAVFLSV*G---CEPQTCASELMKKVQ*CTTTRRNNPASNTMPKIS 5057770
Query: 139 PVVAP 143
P P
Sbjct: 5057769 PFNQP 5057755
>gb|CP000786.1| Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)' chromosome I,
complete sequence
Length = 3599677
Score = 35.0 bits (79), Expect = 9.2, Method: Composition-based stats.
Identities = 38/115 (33%), Positives = 52/115 (45%), Gaps = 3/115 (2%)
Frame = +2
Query: 40 KLSQKPRKLQRKMYHFVTSMWCHRUPLR*SFGNWWUKLW*PSPRLMIAKRVESCGVKSSE 99
KL +P+K + + H S HR P R*S N W KL PSP + A S V S E
Sbjct: 2996507 KLYVRPKKERNLIIHLDGS*SYHRIPFR*SIWNSW*KL*NPSPNVKKAMTQLSRAVCSFE 2996686
Query: 100 YGRVAPKKRVCARLLIKKENWCTRKILSHTTQKNAPNHSP---VVAPATTRGIRI 151
++P+ LLIKK NW T KN P V++P + +++
Sbjct: 2996687 -NVLSPQ--TWQALLIKKVNW*TTNNRKKPATKNPSKKDPHNIVMSPGKIKHMKM 2996842
>gb|CP000777.1| Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)' chromosome I,
complete sequence
Length = 3603977
Score = 35.0 bits (79), Expect = 9.2, Method: Composition-based stats.
Identities = 38/115 (33%), Positives = 52/115 (45%), Gaps = 3/115 (2%)
Frame = +3
Query: 40 KLSQKPRKLQRKMYHFVTSMWCHRUPLR*SFGNWWUKLW*PSPRLMIAKRVESCGVKSSE 99
KL +P+K + + H S HR P R*S N W KL PSP + A S V S E
Sbjct: 3004893 KLYVRPKKERNLIIHLDGS*SYHRIPFR*SIWNSW*KL*NPSPNVKKAMTQLSRAVCSFE 3005072
Query: 100 YGRVAPKKRVCARLLIKKENWCTRKILSHTTQKNAPNHSP---VVAPATTRGIRI 151
++P+ LLIKK NW T KN P V++P + +++
Sbjct: 3005073 -NVLSPQ--TWQALLIKKVNW*TTNNRKKPATKNPSKKDPHNIVMSPGKIKHMKM 3005228
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.330 0.133 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 561136380
Number of extensions: 9313221
Number of successful extensions: 61101
Number of sequences better than 10: 11
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 61067
Number of HSP's successfully gapped: 11
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 15 (7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.0 bits)
S2: 78 (34.7 bits)
Query= gi|154333587|ref|NC_009303.1|:subseq(416579,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 11:[revcomp]
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
ref|XM_001562918.1| Leishmania braziliensis MHOM/BR/75/M2904 ste... 126 2e-27
emb|AM494948.1| Leishmania braziliensis chromosome 11 126 2e-27
ref|XM_001464197.1| Leishmania infantum JPCM5 stearic acid desat... 72 5e-11
emb|AM502232.1| Leishmania infantum chromosome 14 72 5e-11
ref|XM_001687598.1| Leishmania major strain Friedlin stearic aci... 56 3e-06
>ref|XM_001562918.1| Leishmania braziliensis MHOM/BR/75/M2904 stearic acid desaturase
(LbrM11_V2.0330) partial mRNA
Length = 1383
Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats.
Identities = 108/151 (71%), Positives = 108/151 (71%)
Frame = -3
Query: 16 TRARAFAQXXXXXXXXXXXXXXAVSYRKSPESCRERCTTSLRQCGATDDRCGSRSGIXXX 75
TRARAFAQ AVSYRKSPESCRERCTTSLRQCGATDDRCGSRSGI
Sbjct: 976 TRARAFAQPASRRRGRSRRAGPAVSYRKSPESCRERCTTSLRQCGATDDRCGSRSGIGGE 797
Query: 76 XXXXXXXXXXXXXXXXXXXXXHPSTAAWRQRSACARGCULRKRTGARGRSUATPPRKTHP 135
HPSTAAWRQRSACARGC LRKRTGARGRS ATPPRKTHP
Sbjct: 796 SCGSPRRG**SLRGWSRAGSSHPSTAAWRQRSACARGC*LRKRTGARGRS*ATPPRKTHP 617
Query: 136 TTPQWLRQPLRGGSGSLUWXRXRQSTCAETP 166
TTPQWLRQPLRGGSGSL W R RQSTCAETP
Sbjct: 616 TTPQWLRQPLRGGSGSL*W*R*RQSTCAETP 524
>emb|AM494948.1| Leishmania braziliensis chromosome 11
Length = 558624
Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats.
Identities = 108/151 (71%), Positives = 108/151 (71%)
Frame = -1
Query: 16 TRARAFAQXXXXXXXXXXXXXXAVSYRKSPESCRERCTTSLRQCGATDDRCGSRSGIXXX 75
TRARAFAQ AVSYRKSPESCRERCTTSLRQCGATDDRCGSRSGI
Sbjct: 141999 TRARAFAQPASRRRGRSRRAGPAVSYRKSPESCRERCTTSLRQCGATDDRCGSRSGIGGE 141820
Query: 76 XXXXXXXXXXXXXXXXXXXXXHPSTAAWRQRSACARGCULRKRTGARGRSUATPPRKTHP 135
HPSTAAWRQRSACARGC LRKRTGARGRS ATPPRKTHP
Sbjct: 141819 SCGSPRRG**SLRGWSRAGSSHPSTAAWRQRSACARGC*LRKRTGARGRS*ATPPRKTHP 141640
Query: 136 TTPQWLRQPLRGGSGSLUWXRXRQSTCAETP 166
TTPQWLRQPLRGGSGSL W R RQSTCAETP
Sbjct: 141639 TTPQWLRQPLRGGSGSL*W*R*RQSTCAETP 141547
>ref|XM_001464197.1| Leishmania infantum JPCM5 stearic acid desaturase, putative
(LinJ14.0520) partial mRNA
Length = 1404
Score = 72.4 bits (176), Expect = 5e-11, Method: Composition-based stats.
Identities = 76/149 (51%), Positives = 82/149 (55%)
Frame = -3
Query: 18 ARAFAQXXXXXXXXXXXXXXAVSYRKSPESCRERCTTSLRQCGATDDRCGSRSGIXXXXX 77
ARA Q A S R+SPESC CTTS QCG TDDRCGSRSG
Sbjct: 970 ARACTQPAPRRRGRRQCAAHAASCRRSPESCT*ICTTSSYQCGTTDDRCGSRSGTGGGSC 791
Query: 78 XXXXXXXXXXXXXXXXXXXHPSTAAWRQRSACARGCULRKRTGARGRSUATPPRKTHPTT 137
HP TA+WRQR CARGC R+RTG RS ATPPR+THP T
Sbjct: 790 GSPRRGL*SRRRRSRAVSCHPRTASWRQRGPCARGC**RRRTGVPERS*ATPPRRTHPPT 611
Query: 138 PQWLRQPLRGGSGSLUWXRXRQSTCAETP 166
QWLR+P GSGSL W + RQSTCA TP
Sbjct: 610 HQWLRRPP*EGSGSLSWSQWRQSTCAGTP 524
>emb|AM502232.1| Leishmania infantum chromosome 14
Length = 646237
Score = 72.4 bits (176), Expect = 5e-11, Method: Composition-based stats.
Identities = 76/149 (51%), Positives = 82/149 (55%)
Frame = +2
Query: 18 ARAFAQXXXXXXXXXXXXXXAVSYRKSPESCRERCTTSLRQCGATDDRCGSRSGIXXXXX 77
ARA Q A S R+SPESC CTTS QCG TDDRCGSRSG
Sbjct: 190901 ARACTQPAPRRRGRRQCAAHAASCRRSPESCT*ICTTSSYQCGTTDDRCGSRSGTGGGSC 191080
Query: 78 XXXXXXXXXXXXXXXXXXXHPSTAAWRQRSACARGCULRKRTGARGRSUATPPRKTHPTT 137
HP TA+WRQR CARGC R+RTG RS ATPPR+THP T
Sbjct: 191081 GSPRRGL*SRRRRSRAVSCHPRTASWRQRGPCARGC**RRRTGVPERS*ATPPRRTHPPT 191260
Query: 138 PQWLRQPLRGGSGSLUWXRXRQSTCAETP 166
QWLR+P GSGSL W + RQSTCA TP
Sbjct: 191261 HQWLRRPP*EGSGSLSWSQWRQSTCAGTP 191347
>ref|XM_001687598.1| Leishmania major strain Friedlin stearic acid desaturase, putative
(LmjF14.0510) partial mRNA
Length = 1404
Score = 56.2 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 74/149 (49%), Positives = 80/149 (53%)
Frame = -3
Query: 18 ARAFAQXXXXXXXXXXXXXXAVSYRKSPESCRERCTTSLRQCGATDDRCGSRSGIXXXXX 77
ARA Q A R+SPESC CTT QCGATDDR GSRSG
Sbjct: 970 ARACTQPAPRRRGRRQCAAHAAGCRRSPESCT*ICTTLSYQCGATDDRYGSRSGTGGGSC 791
Query: 78 XXXXXXXXXXXXXXXXXXXHPSTAAWRQRSACARGCULRKRTGARGRSUATPPRKTHPTT 137
+ TAAWRQR CARGC R+RTGA RS ATPPR+TH T
Sbjct: 790 GSPRRGL*SQRRRSRAVSCYLRTAAWRQRGPCARGC**RRRTGAPERS*ATPPRRTHLPT 611
Query: 138 PQWLRQPLRGGSGSLUWXRXRQSTCAETP 166
QWLR+P GGSGSL W + RQSTCA TP
Sbjct: 610 HQWLRRPP*GGSGSLSWSQWRQSTCAGTP 524
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.329 0.134 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 517965384
Number of extensions: 8421843
Number of successful extensions: 160276
Number of sequences better than 10: 41
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 159796
Number of HSP's successfully gapped: 54
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 15 (7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.0 bits)
S2: 78 (34.7 bits)
Query= gi|154333587|ref|NC_009303.1|:subseq(416579,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 11:[revcomp]
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
emb|AM494948.1| Leishmania braziliensis chromosome 11 229 2e-58
ref|XM_001562918.1| Leishmania braziliensis MHOM/BR/75/M2904 ste... 229 3e-58
ref|XM_001464197.1| Leishmania infantum JPCM5 stearic acid desat... 129 5e-28
emb|AM502232.1| Leishmania infantum chromosome 14 129 5e-28
ref|XM_001687598.1| Leishmania major strain Friedlin stearic aci... 125 5e-27
>emb|AM494948.1| Leishmania braziliensis chromosome 11
Length = 558624
Score = 229 bits (585), Expect = 2e-58, Method: Composition-based stats.
Identities = 129/166 (77%), Positives = 129/166 (77%)
Frame = -2
Query: 1 RWHLQPPHLIRCFHQPALVRSHSLHRGGAVDHGARGPLXVIAKAQKAAEKDVPLRYVNVV 60
RWHLQPPHLIRCFHQPALVRSHSLHRGGAVDHGARGPL VIAKAQKAAEKDVPLRYVNVV
Sbjct: 142043 RWHLQPPHLIRCFHQPALVRSHSLHRGGAVDHGARGPL*VIAKAQKAAEKDVPLRYVNVV 141864
Query: 61 PQMTXXXXXXXXXXXXXXXXXXXDDRXEXXXXXXXXXXXXXXXAKEARVREAVDXERELV 120
PQMT DDR E AKEARVREAVD ERELV
Sbjct: 141863 PQMTVAVVVRELVVKVVVALAEVDDR*EGGVVRGQVIRVRPRGAKEARVREAVD*ERELV 141684
Query: 121 HEEDLEPHHPEKRTQPLPSGCASHYEGDQDPCDGSDNGKVLALKLH 166
HEEDLEPHHPEKRTQPLPSGCASHYEGDQDPCDGSDNGKVLALKLH
Sbjct: 141683 HEEDLEPHHPEKRTQPLPSGCASHYEGDQDPCDGSDNGKVLALKLH 141546
>ref|XM_001562918.1| Leishmania braziliensis MHOM/BR/75/M2904 stearic acid desaturase
(LbrM11_V2.0330) partial mRNA
Length = 1383
Score = 229 bits (583), Expect = 3e-58, Method: Composition-based stats.
Identities = 129/166 (77%), Positives = 129/166 (77%)
Frame = -1
Query: 1 RWHLQPPHLIRCFHQPALVRSHSLHRGGAVDHGARGPLXVIAKAQKAAEKDVPLRYVNVV 60
RWHLQPPHLIRCFHQPALVRSHSLHRGGAVDHGARGPL VIAKAQKAAEKDVPLRYVNVV
Sbjct: 1020 RWHLQPPHLIRCFHQPALVRSHSLHRGGAVDHGARGPL*VIAKAQKAAEKDVPLRYVNVV 841
Query: 61 PQMTXXXXXXXXXXXXXXXXXXXDDRXEXXXXXXXXXXXXXXXAKEARVREAVDXERELV 120
PQMT DDR E AKEARVREAVD ERELV
Sbjct: 840 PQMTVAVVVRELVVKVVVALAEVDDR*EGGVVRGQVIRVRPRGAKEARVREAVD*ERELV 661
Query: 121 HEEDLEPHHPEKRTQPLPSGCASHYEGDQDPCDGSDNGKVLALKLH 166
HEEDLEPHHPEKRTQPLPSGCASHYEGDQDPCDGSDNGKVLALKLH
Sbjct: 660 HEEDLEPHHPEKRTQPLPSGCASHYEGDQDPCDGSDNGKVLALKLH 523
>ref|XM_001464197.1| Leishmania infantum JPCM5 stearic acid desaturase, putative
(LinJ14.0520) partial mRNA
Length = 1404
Score = 129 bits (323), Expect = 5e-28, Method: Composition-based stats.
Identities = 83/150 (55%), Positives = 97/150 (64%)
Frame = -1
Query: 17 ALVRSHSLHRGGAVDHGARGPLXVIAKAQKAAEKDVPLRYVNVVPQMTXXXXXXXXXXXX 76
A VR+HSLHRGGAVD AR L V+A+AQKAA K VPLR++NVVPQMT
Sbjct: 972 APVRAHSLHRGGAVDDSARRTLQVVAEAQKAAHKYVPLRHINVVPQMTVAVVVRELVVVV 793
Query: 77 XXXXXXXDDRXEXXXXXXXXXXXXXXXAKEARVREAVDXERELVHEEDLEPHHPEKRTQP 136
DR + AKE RVREAVD E ELV+++DLEPHHPE+RT+P
Sbjct: 792 VVALAEVYDREDDGVVRCLVIRVRPRGAKEVRVREAVDEEGELVYQKDLEPHHPEERTRP 613
Query: 137 LPSGCASHYEGDQDPCDGSDNGKVLALKLH 166
L SGCA H+E DQDPC G + GKVLAL+LH
Sbjct: 612 LTSGCAGHHERDQDPCHGRNGGKVLALELH 523
>emb|AM502232.1| Leishmania infantum chromosome 14
Length = 646237
Score = 129 bits (323), Expect = 5e-28, Method: Composition-based stats.
Identities = 83/150 (55%), Positives = 97/150 (64%)
Frame = +3
Query: 17 ALVRSHSLHRGGAVDHGARGPLXVIAKAQKAAEKDVPLRYVNVVPQMTXXXXXXXXXXXX 76
A VR+HSLHRGGAVD AR L V+A+AQKAA K VPLR++NVVPQMT
Sbjct: 190899 APVRAHSLHRGGAVDDSARRTLQVVAEAQKAAHKYVPLRHINVVPQMTVAVVVRELVVVV 191078
Query: 77 XXXXXXXDDRXEXXXXXXXXXXXXXXXAKEARVREAVDXERELVHEEDLEPHHPEKRTQP 136
DR + AKE RVREAVD E ELV+++DLEPHHPE+RT+P
Sbjct: 191079 VVALAEVYDREDDGVVRCLVIRVRPRGAKEVRVREAVDEEGELVYQKDLEPHHPEERTRP 191258
Query: 137 LPSGCASHYEGDQDPCDGSDNGKVLALKLH 166
L SGCA H+E DQDPC G + GKVLAL+LH
Sbjct: 191259 LTSGCAGHHERDQDPCHGRNGGKVLALELH 191348
>ref|XM_001687598.1| Leishmania major strain Friedlin stearic acid desaturase, putative
(LmjF14.0510) partial mRNA
Length = 1404
Score = 125 bits (314), Expect = 5e-27, Method: Composition-based stats.
Identities = 82/150 (54%), Positives = 94/150 (62%)
Frame = -1
Query: 17 ALVRSHSLHRGGAVDHGARGPLXVIAKAQKAAEKDVPLRYVNVVPQMTXXXXXXXXXXXX 76
A V +HSL RGGAVD AR L V+A+AQKAA K VPL ++NVVPQMT
Sbjct: 972 APVHAHSLRRGGAVDDSARRTLQVVAEAQKAAHKYVPLCHINVVPQMTVTVVVRELVVVV 793
Query: 77 XXXXXXXDDRXEXXXXXXXXXXXXXXXAKEARVREAVDXERELVHEEDLEPHHPEKRTQP 136
DR + AKE RVREAVD E ELVH++DLEPHHPE+RT P
Sbjct: 792 VVALAEVYDRKDDGVVRCLVICVRPRGAKEVRVREAVDEEGELVHQKDLEPHHPEERTCP 613
Query: 137 LPSGCASHYEGDQDPCDGSDNGKVLALKLH 166
L SGCA H+EGDQDPC G + GKVLAL+LH
Sbjct: 612 LTSGCAGHHEGDQDPCHGRNGGKVLALELH 523
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.329 0.143 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 513207864
Number of extensions: 7035273
Number of successful extensions: 67243
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 67227
Number of HSP's successfully gapped: 0
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 15 (7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.0 bits)
S2: 78 (34.7 bits)
Query= gi|154333587|ref|NC_009303.1|:subseq(449930,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 11
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
emb|AM494948.1| Leishmania braziliensis chromosome 11 219 2e-55
ref|XM_001562981.1| Leishmania braziliensis MHOM/BR/75/M2904 hyp... 184 6e-45
ref|XM_001463879.1| Leishmania infantum JPCM5 hypothetical prote... 128 8e-28
emb|AM502229.1| Leishmania infantum chromosome 11 128 8e-28
ref|XM_001681532.1| Leishmania major hypothetical protein, conse... 124 1e-26
ref|XM_823596.1| Trypanosoma brucei TREU927 hypothetical protein... 37 1.7
>emb|AM494948.1| Leishmania braziliensis chromosome 11
Length = 558624
Score = 219 bits (558), Expect = 2e-55, Method: Composition-based stats.
Identities = 139/166 (83%), Positives = 139/166 (83%)
Frame = +3
Query: 1 LVWLRCRQLPWRNDGGPLRAAAWPXLESTULGPQRRGAVDEPSAGGGAARDLCPPADRGG 60
LVWLRCRQLPWRNDGGPLRAAAWP LEST LGPQRRGAVDEPSAGGGAARDLCPPADRGG
Sbjct: 449931 LVWLRCRQLPWRNDGGPLRAAAWP*LEST*LGPQRRGAVDEPSAGGGAARDLCPPADRGG 450110
Query: 61 RLHPPUQEPVUXXXXXXXXXXXXXXXXXXXXXDHAQPAPRWVHVARPWRVGARLLLLRPV 120
RLHPP QEPV DHAQPAPRWVHVARPWRVGARLLLLRPV
Sbjct: 450111 RLHPP*QEPV*ASGRLLGLGGELSAACGEAGGDHAQPAPRWVHVARPWRVGARLLLLRPV 450290
Query: 121 HACADADPVPLQPPQLAAHGSHRPASVUDHQQPEQGEEUPHAFFGG 166
HACADADPVPLQPPQLAAHGSHRPASV DHQQPEQGEE PHAFFGG
Sbjct: 450291 HACADADPVPLQPPQLAAHGSHRPASV*DHQQPEQGEE*PHAFFGG 450428
>ref|XM_001562981.1| Leishmania braziliensis MHOM/BR/75/M2904 hypothetical protein,
conserved (LbrM11_V2.0980) partial mRNA
Length = 1146
Score = 184 bits (468), Expect = 6e-45, Method: Composition-based stats.
Identities = 126/153 (82%), Positives = 126/153 (82%)
Frame = +3
Query: 14 DGGPLRAAAWPXLESTULGPQRRGAVDEPSAGGGAARDLCPPADRGGRLHPPUQEPVUXX 73
DGGPLRAAAWP LEST LGPQRRGAVDEPSAGGGAARDLCPPADRGGRLHPP QEPV
Sbjct: 3 DGGPLRAAAWP*LEST*LGPQRRGAVDEPSAGGGAARDLCPPADRGGRLHPP*QEPV*AS 182
Query: 74 XXXXXXXXXXXXXXXXXXXDHAQPAPRWVHVARPWRVGARLLLLRPVHACADADPVPLQP 133
DHAQPAPRWVHVARPWRVGARLLLLRPVHACADADPVPLQP
Sbjct: 183 GRLLGLGGELSAACGEAGGDHAQPAPRWVHVARPWRVGARLLLLRPVHACADADPVPLQP 362
Query: 134 PQLAAHGSHRPASVUDHQQPEQGEEUPHAFFGG 166
PQLAAHGSHRPASV DHQQPEQGEE PHAFFGG
Sbjct: 363 PQLAAHGSHRPASV*DHQQPEQGEE*PHAFFGG 461
>ref|XM_001463879.1| Leishmania infantum JPCM5 hypothetical protein, conserved
(LinJ11.1160) partial mRNA
Length = 1326
Score = 128 bits (321), Expect = 8e-28, Method: Composition-based stats.
Identities = 96/164 (58%), Positives = 104/164 (63%)
Frame = +3
Query: 3 WLRCRQLPWRNDGGPLRAAAWPXLESTULGPQRRGAVDEPSAGGGAARDLCPPADRGGRL 62
W R L RN GG RAAA LEST +G RGAVDEP+AGGG A DL ADRGGRL
Sbjct: 150 WCPWRPLQ*RNGGGAPRAAASH*LEST*VGTHGRGAVDEPAAGGGTAGDLRRSADRGGRL 329
Query: 63 HPPUQEPVUXXXXXXXXXXXXXXXXXXXXXDHAQPAPRWVHVARPWRVGARLLLLRPVHA 122
H P + V DHAQPAPRWVHV RP +G RLLLLRPVHA
Sbjct: 330 HLPR*KSVRASGRLLGLGRELPATCGEAGGDHAQPAPRWVHVVRPRWLGPRLLLLRPVHA 509
Query: 123 CADADPVPLQPPQLAAHGSHRPASVUDHQQPEQGEEUPHAFFGG 166
CADAD VPLQPP+LAAHG HRPA + DHQQ EQG++ PH GG
Sbjct: 510 CADADSVPLQPPKLAAHGPHRPADIGDHQQSEQGQK*PHLIVGG 641
>emb|AM502229.1| Leishmania infantum chromosome 11
Length = 575805
Score = 128 bits (321), Expect = 8e-28, Method: Composition-based stats.
Identities = 96/164 (58%), Positives = 104/164 (63%)
Frame = +1
Query: 3 WLRCRQLPWRNDGGPLRAAAWPXLESTULGPQRRGAVDEPSAGGGAARDLCPPADRGGRL 62
W R L RN GG RAAA LEST +G RGAVDEP+AGGG A DL ADRGGRL
Sbjct: 473491 WCPWRPLQ*RNGGGAPRAAASH*LEST*VGTHGRGAVDEPAAGGGTAGDLRRSADRGGRL 473670
Query: 63 HPPUQEPVUXXXXXXXXXXXXXXXXXXXXXDHAQPAPRWVHVARPWRVGARLLLLRPVHA 122
H P + V DHAQPAPRWVHV RP +G RLLLLRPVHA
Sbjct: 473671 HLPR*KSVRASGRLLGLGRELPATCGEAGGDHAQPAPRWVHVVRPRWLGPRLLLLRPVHA 473850
Query: 123 CADADPVPLQPPQLAAHGSHRPASVUDHQQPEQGEEUPHAFFGG 166
CADAD VPLQPP+LAAHG HRPA + DHQQ EQG++ PH GG
Sbjct: 473851 CADADSVPLQPPKLAAHGPHRPADIGDHQQSEQGQK*PHLIVGG 473982
>ref|XM_001681532.1| Leishmania major hypothetical protein, conserved (LmjF11.1180)
partial mRNA
Length = 1224
Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats.
Identities = 94/154 (61%), Positives = 98/154 (63%)
Frame = +3
Query: 12 RNDGGPLRAAAWPXLESTULGPQRRGAVDEPSAGGGAARDLCPPADRGGRLHPPUQEPVU 71
RN GG RAAA LEST +G RGAVDE +GGG A DL ADRGGRLH P E V
Sbjct: 75 RNVGGAPRAAASH*LESTEVGTHGRGAVDESESGGGTAGDLRFSADRGGRLHLPR*ESVR 254
Query: 72 XXXXXXXXXXXXXXXXXXXXXDHAQPAPRWVHVARPWRVGARLLLLRPVHACADADPVPL 131
DHAQPAPR VHV RP +G RLLLLRPVHACADADPVPL
Sbjct: 255 ASGRLLGLGRELPAACGETGGDHAQPAPRRVHVVRPRWLGPRLLLLRPVHACADADPVPL 434
Query: 132 QPPQLAAHGSHRPASVUDHQQPEQGEEUPHAFFG 165
QPPQLAAHG HRPA + DHQQ EQGEE PH G
Sbjct: 435 QPPQLAAHGPHRPADIGDHQQSEQGEE*PHLIVG 536
>ref|XM_823596.1| Trypanosoma brucei TREU927 hypothetical protein (Tb11.02.4020)
partial mRNA
Length = 1257
Score = 37.4 bits (85), Expect = 1.7, Method: Composition-based stats.
Identities = 35/117 (29%), Positives = 47/117 (40%)
Frame = +3
Query: 50 RDLCPPADRGGRLHPPUQEPVUXXXXXXXXXXXXXXXXXXXXXDHAQPAPRWVHVARPWR 109
R + AD GGR H +E + DHA P+ R W
Sbjct: 216 RSVRSAADGGGRFHSS*EERL*AARGLLGLDCGISAAS*EASGDHAAPSERRRIRF*LWG 395
Query: 110 VGARLLLLRPVHACADADPVPLQPPQLAAHGSHRPASVUDHQQPEQGEEUPHAFFGG 166
+G R+LLL +HA A PV + Q SH P+++ D PE +E P GG
Sbjct: 396 LGERILLLWYLHATVYACPVVAKSSQCPPPKSH*PSAIGDRYLPEPRQERPLT*HGG 566
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.323 0.142 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 706523877
Number of extensions: 12935932
Number of successful extensions: 94927
Number of sequences better than 10: 3
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 94841
Number of HSP's successfully gapped: 3
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 16 (7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 78 (34.7 bits)
Query= gi|154333587|ref|NC_009303.1|:subseq(449930,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 11
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
emb|AM494948.1| Leishmania braziliensis chromosome 11 355 3e-96
ref|XM_001562981.1| Leishmania braziliensis MHOM/BR/75/M2904 hyp... 327 6e-88
ref|XM_001463879.1| Leishmania infantum JPCM5 hypothetical prote... 316 1e-84
emb|AM502229.1| Leishmania infantum chromosome 11 316 1e-84
ref|XM_001681532.1| Leishmania major hypothetical protein, conse... 312 3e-83
ref|XM_801883.1| Trypanosoma cruzi strain CL Brener hypothetical... 239 2e-61
ref|XM_815122.1| Trypanosoma cruzi strain CL Brener hypothetical... 239 3e-61
ref|XM_823596.1| Trypanosoma brucei TREU927 hypothetical protein... 219 3e-55
emb|CU633453.1| Podospora anserina genomic DNA chromosome 3, sup... 40 0.21
emb|AL121821.7|CNS01DSN Human chromosome 14 DNA sequence BAC C-2... 38 1.2
>emb|AM494948.1| Leishmania braziliensis chromosome 11
Length = 558624
Score = 355 bits (911), Expect = 3e-96, Method: Composition-based stats.
Identities = 166/166 (100%), Positives = 166/166 (100%)
Frame = +1
Query: 1 SCGYGVGSCRGGMTGALYVQQRGLSWNPLDWGRSDVGRSTNPQLEEELPEIFARQPTEVD 60
SCGYGVGSCRGGMTGALYVQQRGLSWNPLDWGRSDVGRSTNPQLEEELPEIFARQPTEVD
Sbjct: 449932 SCGYGVGSCRGGMTGALYVQQRGLSWNPLDWGRSDVGRSTNPQLEEELPEIFARQPTEVD 450111
Query: 61 DYIRPDKSLFERLEDFWDWAVSFLQPVEKQVEIMRSLRHDGFMSLDLGGWGHVFFFYGLC 120
DYIRPDKSLFERLEDFWDWAVSFLQPVEKQVEIMRSLRHDGFMSLDLGGWGHVFFFYGLC
Sbjct: 450112 DYIRPDKSLFERLEDFWDWAVSFLQPVEKQVEIMRSLRHDGFMSLDLGGWGHVFFFYGLC 450291
Query: 121 MRVLTLIPSLYSHRNSLRMAHIGPQVSEITNSQNKVKNDRTLSSAE 166
MRVLTLIPSLYSHRNSLRMAHIGPQVSEITNSQNKVKNDRTLSSAE
Sbjct: 450292 MRVLTLIPSLYSHRNSLRMAHIGPQVSEITNSQNKVKNDRTLSSAE 450429
>ref|XM_001562981.1| Leishmania braziliensis MHOM/BR/75/M2904 hypothetical protein,
conserved (LbrM11_V2.0980) partial mRNA
Length = 1146
Score = 327 bits (839), Expect = 6e-88, Method: Composition-based stats.
Identities = 154/154 (100%), Positives = 154/154 (100%)
Frame = +1
Query: 13 MTGALYVQQRGLSWNPLDWGRSDVGRSTNPQLEEELPEIFARQPTEVDDYIRPDKSLFER 72
MTGALYVQQRGLSWNPLDWGRSDVGRSTNPQLEEELPEIFARQPTEVDDYIRPDKSLFER
Sbjct: 1 MTGALYVQQRGLSWNPLDWGRSDVGRSTNPQLEEELPEIFARQPTEVDDYIRPDKSLFER 180
Query: 73 LEDFWDWAVSFLQPVEKQVEIMRSLRHDGFMSLDLGGWGHVFFFYGLCMRVLTLIPSLYS 132
LEDFWDWAVSFLQPVEKQVEIMRSLRHDGFMSLDLGGWGHVFFFYGLCMRVLTLIPSLYS
Sbjct: 181 LEDFWDWAVSFLQPVEKQVEIMRSLRHDGFMSLDLGGWGHVFFFYGLCMRVLTLIPSLYS 360
Query: 133 HRNSLRMAHIGPQVSEITNSQNKVKNDRTLSSAE 166
HRNSLRMAHIGPQVSEITNSQNKVKNDRTLSSAE
Sbjct: 361 HRNSLRMAHIGPQVSEITNSQNKVKNDRTLSSAE 462
>ref|XM_001463879.1| Leishmania infantum JPCM5 hypothetical protein, conserved
(LinJ11.1160) partial mRNA
Length = 1326
Score = 316 bits (810), Expect = 1e-84, Method: Composition-based stats.
Identities = 147/168 (87%), Positives = 154/168 (91%), Gaps = 2/168 (1%)
Frame = +1
Query: 1 SCGYGV--GSCRGGMTGALYVQQRGLSWNPLDWGRSDVGRSTNPQLEEELPEIFARQPTE 58
+CG+GV G C GM AL+VQQR +SWNPL WGR+DVGRSTNPQLEEELPEIFA QP E
Sbjct: 139 ACGHGVRGGRCSSGMVVALHVQQRRISWNPLKWGRTDVGRSTNPQLEEELPEIFAAQPIE 318
Query: 59 VDDYIRPDKSLFERLEDFWDWAVSFLQPVEKQVEIMRSLRHDGFMSLDLGGWGHVFFFYG 118
VDDYI PDKSLFERLEDFWDWAVSFLQPVEKQVEIMRSLRHDGFMS DLGGWGHVFFFYG
Sbjct: 319 VDDYICPDKSLFERLEDFWDWAVSFLQPVEKQVEIMRSLRHDGFMSFDLGGWGHVFFFYG 498
Query: 119 LCMRVLTLIPSLYSHRNSLRMAHIGPQVSEITNSQNKVKNDRTLSSAE 166
LCMRVLTLIPSLYSHRNSLRMAHIGPQ+SEITN+QNK KNDRTLSSAE
Sbjct: 499 LCMRVLTLIPSLYSHRNSLRMAHIGPQISEITNNQNKAKNDRTLSSAE 642
>emb|AM502229.1| Leishmania infantum chromosome 11
Length = 575805
Score = 316 bits (810), Expect = 1e-84, Method: Composition-based stats.
Identities = 147/168 (87%), Positives = 154/168 (91%), Gaps = 2/168 (1%)
Frame = +2
Query: 1 SCGYGV--GSCRGGMTGALYVQQRGLSWNPLDWGRSDVGRSTNPQLEEELPEIFARQPTE 58
+CG+GV G C GM AL+VQQR +SWNPL WGR+DVGRSTNPQLEEELPEIFA QP E
Sbjct: 473480 ACGHGVRGGRCSSGMVVALHVQQRRISWNPLKWGRTDVGRSTNPQLEEELPEIFAAQPIE 473659
Query: 59 VDDYIRPDKSLFERLEDFWDWAVSFLQPVEKQVEIMRSLRHDGFMSLDLGGWGHVFFFYG 118
VDDYI PDKSLFERLEDFWDWAVSFLQPVEKQVEIMRSLRHDGFMS DLGGWGHVFFFYG
Sbjct: 473660 VDDYICPDKSLFERLEDFWDWAVSFLQPVEKQVEIMRSLRHDGFMSFDLGGWGHVFFFYG 473839
Query: 119 LCMRVLTLIPSLYSHRNSLRMAHIGPQVSEITNSQNKVKNDRTLSSAE 166
LCMRVLTLIPSLYSHRNSLRMAHIGPQ+SEITN+QNK KNDRTLSSAE
Sbjct: 473840 LCMRVLTLIPSLYSHRNSLRMAHIGPQISEITNNQNKAKNDRTLSSAE 473983
>ref|XM_001681532.1| Leishmania major hypothetical protein, conserved (LmjF11.1180)
partial mRNA
Length = 1224
Score = 312 bits (799), Expect = 3e-83, Method: Composition-based stats.
Identities = 146/168 (86%), Positives = 153/168 (91%), Gaps = 2/168 (1%)
Frame = +1
Query: 1 SCGYGV--GSCRGGMTGALYVQQRGLSWNPLDWGRSDVGRSTNPQLEEELPEIFARQPTE 58
+CG+GV G C GM AL+VQQR +SWNPL WGR+DVGRS NP LEEELPEIFA QPTE
Sbjct: 37 ACGHGVRSGRCSSGMLVALHVQQRRISWNPLKWGRTDVGRSMNPNLEEELPEIFASQPTE 216
Query: 59 VDDYIRPDKSLFERLEDFWDWAVSFLQPVEKQVEIMRSLRHDGFMSLDLGGWGHVFFFYG 118
VDDYI PDKSLFERLEDFWDWAVSFLQPVEKQVEIMRSLRHDGFMS DLGGWGHVFFFYG
Sbjct: 217 VDDYICPDKSLFERLEDFWDWAVSFLQPVEKQVEIMRSLRHDGFMSFDLGGWGHVFFFYG 396
Query: 119 LCMRVLTLIPSLYSHRNSLRMAHIGPQVSEITNSQNKVKNDRTLSSAE 166
LCMRVLTLIPSLYSHRNSLRMAHIGPQ+SEITN+QNK KNDRTLSSAE
Sbjct: 397 LCMRVLTLIPSLYSHRNSLRMAHIGPQISEITNNQNKAKNDRTLSSAE 540
>ref|XM_801883.1| Trypanosoma cruzi strain CL Brener hypothetical protein partial
mRNA
Length = 1287
Score = 239 bits (610), Expect = 2e-61, Method: Composition-based stats.
Identities = 106/154 (68%), Positives = 133/154 (86%), Gaps = 1/154 (0%)
Frame = +1
Query: 14 TGALYVQQRGLSWNPLDW-GRSDVGRSTNPQLEEELPEIFARQPTEVDDYIRPDKSLFER 72
T + V R +SWNP +W G S VGR ++ Q+E+ELP++FA+QP EVDD+IRP+KS+FER
Sbjct: 139 TETILVSVRCISWNPANWAGDSPVGRESHRQIEDELPDVFAQQPQEVDDFIRPEKSVFER 318
Query: 73 LEDFWDWAVSFLQPVEKQVEIMRSLRHDGFMSLDLGGWGHVFFFYGLCMRVLTLIPSLYS 132
LEDFWDW VSF+QPVEKQ+E+MRSLRH GF+ D G WG+VFFFYG+ MR+ TL+PSLYS
Sbjct: 319 LEDFWDWIVSFMQPVEKQLEVMRSLRHSGFLGFDFGTWGNVFFFYGIVMRLCTLVPSLYS 498
Query: 133 HRNSLRMAHIGPQVSEITNSQNKVKNDRTLSSAE 166
HRN+LRM++IGPQ+SEITN+QN+VKNDRTLSSAE
Sbjct: 499 HRNALRMSYIGPQISEITNNQNRVKNDRTLSSAE 600
>ref|XM_815122.1| Trypanosoma cruzi strain CL Brener hypothetical protein partial
mRNA
Length = 1287
Score = 239 bits (609), Expect = 3e-61, Method: Composition-based stats.
Identities = 105/154 (68%), Positives = 133/154 (86%), Gaps = 1/154 (0%)
Frame = +1
Query: 14 TGALYVQQRGLSWNPLDW-GRSDVGRSTNPQLEEELPEIFARQPTEVDDYIRPDKSLFER 72
T + V R +SWNP +W G S VGR ++ Q+E+ELP++FA+QP EVDD+IRP+KS+FER
Sbjct: 139 TETILVSVRCISWNPANWVGNSPVGRESHRQIEDELPDVFAQQPQEVDDFIRPEKSVFER 318
Query: 73 LEDFWDWAVSFLQPVEKQVEIMRSLRHDGFMSLDLGGWGHVFFFYGLCMRVLTLIPSLYS 132
LEDFWDW VSF+QPVEKQ+E+MRSLRH GF+ D G WG+VFFFYG+ MR+ TL+PSLYS
Sbjct: 319 LEDFWDWIVSFMQPVEKQLEVMRSLRHSGFLGFDFGTWGNVFFFYGIVMRLCTLVPSLYS 498
Query: 133 HRNSLRMAHIGPQVSEITNSQNKVKNDRTLSSAE 166
HRN+LRM++IGPQ+SEITN+QN+VKNDRTLS+AE
Sbjct: 499 HRNALRMSYIGPQISEITNNQNRVKNDRTLSTAE 600
>ref|XM_823596.1| Trypanosoma brucei TREU927 hypothetical protein (Tb11.02.4020)
partial mRNA
Length = 1257
Score = 219 bits (557), Expect = 3e-55, Method: Composition-based stats.
Identities = 99/155 (63%), Positives = 125/155 (80%), Gaps = 1/155 (0%)
Frame = +1
Query: 13 MTGALYVQQRGLSWNPLDWGRSD-VGRSTNPQLEEELPEIFARQPTEVDDYIRPDKSLFE 71
MTGA+ R SWNP W +D +GR ++ ++EEELPE+FA+QP EVDD+IRP+KS+FE
Sbjct: 115 MTGAI----RCFSWNPASWMNTDTIGRKSHQEIEEELPEVFAQQPMEVDDFIRPEKSVFE 282
Query: 72 RLEDFWDWAVSFLQPVEKQVEIMRSLRHDGFMSLDLGGWGHVFFFYGLCMRVLTLIPSLY 131
RLEDFWDW V FLQPVEKQVEIMR LR++G D GGWG+VFFFYG+ MR+ TL+PSL
Sbjct: 283 RLEDFWDWIVGFLQPVEKQVEIMRHLRNEGVFGFDFGGWGNVFFFYGIFMRLCTLVPSLL 462
Query: 132 SHRNSLRMAHIGPQVSEITNSQNKVKNDRTLSSAE 166
SHRN+LR++HI PQ+SEI QN+ K+DR+LS+AE
Sbjct: 463 SHRNALRLSHINPQLSEIATCQNRAKSDRSLSTAE 567
>emb|CU633453.1| Podospora anserina genomic DNA chromosome 3, supercontig 3
Length = 413974
Score = 40.4 bits (93), Expect = 0.21, Method: Composition-based stats.
Identities = 47/151 (31%), Positives = 67/151 (44%), Gaps = 17/151 (11%)
Frame = -2
Query: 22 RGLSWNPLDWGRSDVGRSTN-PQLEEELPEI-FARQPTEVDDYIRPDKSLFER------L 73
RG SW P+ GR+ RSTN P E L +P+ + +P +S L
Sbjct: 395085 RGQSW-PV--GRAHRNRSTNEPTAERVLTGAENPNRPSTTPQHTQPIESHMAATSKPNFL 394915
Query: 74 EDFWDWAVS----FLQPVEKQVEIMRSLRHDGFMSLDLGGWGHVFFFYGL----CMRVLT 125
W WAVS LQP + + ++ GF L +G WG G C+R+L+
Sbjct: 394914 SKTWTWAVSCRAEVLQPEVRLASGLGAVCFSGFRELAIGNWGCRRLLIGAFPVPCVRILS 394735
Query: 126 L-IPSLYSHRNSLRMAHIGPQVSEITNSQNK 155
+ I S S++NS + PQV EI N+
Sbjct: 394734 VAIFSTESYQNS*Q----PPQVPEIVTDSNR 394654
>emb|AL121821.7|CNS01DSN Human chromosome 14 DNA sequence BAC C-2298J14 of library CalTech-D
from chromosome 14 of Homo sapiens (Human), complete
sequence
Length = 127539
Score = 37.7 bits (86), Expect = 1.2, Method: Composition-based stats.
Identities = 19/43 (44%), Positives = 24/43 (55%)
Frame = +3
Query: 103 MSLDLGGWGHVFFFYGLCMRVLTLIPSLYSHRNSLRMAHIGPQ 145
+SL LG WGH F Y LC L L PS SH ++ + + PQ
Sbjct: 11571 LSLSLGSWGHYLFKYFLC-PFLFLFPSWNSHNANVGLQDVVPQ 11696
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.320 0.138 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 590416032
Number of extensions: 9149245
Number of successful extensions: 49031
Number of sequences better than 10: 1
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 49016
Number of HSP's successfully gapped: 1
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 16 (7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 78 (34.7 bits)
Query= gi|154333587|ref|NC_009303.1|:subseq(449930,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 11
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
ref|XM_001562981.1| Leishmania braziliensis MHOM/BR/75/M2904 hyp... 105 4e-21
emb|AM494948.1| Leishmania braziliensis chromosome 11 105 4e-21
ref|XM_001463879.1| Leishmania infantum JPCM5 hypothetical prote... 72 7e-11
emb|AM502229.1| Leishmania infantum chromosome 11 72 7e-11
ref|XM_001681532.1| Leishmania major hypothetical protein, conse... 71 1e-10
ref|XM_801883.1| Trypanosoma cruzi strain CL Brener hypothetical... 40 0.26
ref|XM_815122.1| Trypanosoma cruzi strain CL Brener hypothetical... 39 0.47
>ref|XM_001562981.1| Leishmania braziliensis MHOM/BR/75/M2904 hypothetical protein,
conserved (LbrM11_V2.0980) partial mRNA
Length = 1146
Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats.
Identities = 96/134 (71%), Positives = 96/134 (71%)
Frame = +2
Query: 14 RGPFTCSSVXXXXXXXXXXXXTWGGRRTLSWRRSCQRSLPASRPRWTTTSALTRACLSVW 73
RGPFTCSSV TWGGRRTLSWRRSCQRSLPASRPRWTTTSALTRACLSVW
Sbjct: 5 RGPFTCSSVALAGIHLIGAAATWGGRRTLSWRRSCQRSLPASRPRWTTTSALTRACLSVW 184
Query: 74 KTSGTGRUAFCSLWRSRWRSCAACATMGSCXXXXXXXXXXXXXXXXXXXXXXXXXPSTAT 133
KTSGTGR AFCSLWRSRWRSCAACATMGSC PSTAT
Sbjct: 185 KTSGTGR*AFCSLWRSRWRSCAACATMGSCRSTLAGGGTSSSSTACACVC*R*SRPSTAT 364
Query: 134 ATRCAWLTSARKCL 147
ATRCAWLTSARKCL
Sbjct: 365 ATRCAWLTSARKCL 406
>emb|AM494948.1| Leishmania braziliensis chromosome 11
Length = 558624
Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats.
Identities = 96/134 (71%), Positives = 96/134 (71%)
Frame = +2
Query: 14 RGPFTCSSVXXXXXXXXXXXXTWGGRRTLSWRRSCQRSLPASRPRWTTTSALTRACLSVW 73
RGPFTCSSV TWGGRRTLSWRRSCQRSLPASRPRWTTTSALTRACLSVW
Sbjct: 449972 RGPFTCSSVALAGIHLIGAAATWGGRRTLSWRRSCQRSLPASRPRWTTTSALTRACLSVW 450151
Query: 74 KTSGTGRUAFCSLWRSRWRSCAACATMGSCXXXXXXXXXXXXXXXXXXXXXXXXXPSTAT 133
KTSGTGR AFCSLWRSRWRSCAACATMGSC PSTAT
Sbjct: 450152 KTSGTGR*AFCSLWRSRWRSCAACATMGSCRSTLAGGGTSSSSTACACVC*R*SRPSTAT 450331
Query: 134 ATRCAWLTSARKCL 147
ATRCAWLTSARKCL
Sbjct: 450332 ATRCAWLTSARKCL 450373
>ref|XM_001463879.1| Leishmania infantum JPCM5 hypothetical protein, conserved
(LinJ11.1160) partial mRNA
Length = 1326
Score = 71.6 bits (174), Expect = 7e-11, Method: Composition-based stats.
Identities = 73/128 (57%), Positives = 78/128 (60%)
Frame = +2
Query: 18 TCSSVXXXXXXXXXXXXTWGGRRTLSWRRSCQRSLPASRPRWTTTSALTRACLSVWKTSG 77
TCSSV TWGGRRT SWRR+C+RS P SR RWTTTSA + C SVWKTSG
Sbjct: 197 TCSSVALAGIHLSGDARTWGGRRTRSWRRNCRRSSPLSR*RWTTTSAQIKVCSSVWKTSG 376
Query: 78 TGRUAFCSLWRSRWRSCAACATMGSCXXXXXXXXXXXXXXXXXXXXXXXXXPSTATATRC 137
TG A C+LWRSRWRSCAACATMGSC PSTAT TRC
Sbjct: 377 TGP*ASCNLWRSRWRSCAACATMGSCRSTSVAGATSSSSTACACVC*R*FRPSTATETRC 556
Query: 138 AWLTSARK 145
AW TSAR+
Sbjct: 557 AWPTSARR 580
>emb|AM502229.1| Leishmania infantum chromosome 11
Length = 575805
Score = 71.6 bits (174), Expect = 7e-11, Method: Composition-based stats.
Identities = 73/128 (57%), Positives = 78/128 (60%)
Frame = +3
Query: 18 TCSSVXXXXXXXXXXXXTWGGRRTLSWRRSCQRSLPASRPRWTTTSALTRACLSVWKTSG 77
TCSSV TWGGRRT SWRR+C+RS P SR RWTTTSA + C SVWKTSG
Sbjct: 473538 TCSSVALAGIHLSGDARTWGGRRTRSWRRNCRRSSPLSR*RWTTTSAQIKVCSSVWKTSG 473717
Query: 78 TGRUAFCSLWRSRWRSCAACATMGSCXXXXXXXXXXXXXXXXXXXXXXXXXPSTATATRC 137
TG A C+LWRSRWRSCAACATMGSC PSTAT TRC
Sbjct: 473718 TGP*ASCNLWRSRWRSCAACATMGSCRSTSVAGATSSSSTACACVC*R*FRPSTATETRC 473897
Query: 138 AWLTSARK 145
AW TSAR+
Sbjct: 473898 AWPTSARR 473921
>ref|XM_001681532.1| Leishmania major hypothetical protein, conserved (LmjF11.1180)
partial mRNA
Length = 1224
Score = 70.9 bits (172), Expect = 1e-10, Method: Composition-based stats.
Identities = 70/128 (54%), Positives = 74/128 (57%)
Frame = +2
Query: 18 TCSSVXXXXXXXXXXXXTWGGRRTLSWRRSCQRSLPASRPRWTTTSALTRACLSVWKTSG 77
TCSSV TWGGR WRR+C+RS SR RWTTTSA R C SVWKTSG
Sbjct: 95 TCSSVALAGIH*SGDARTWGGR*IRIWRRNCRRSSLLSRQRWTTTSAQIRVCSSVWKTSG 274
Query: 78 TGRUAFCSLWRSRWRSCAACATMGSCXXXXXXXXXXXXXXXXXXXXXXXXXPSTATATRC 137
TG A CSLWR+RWRSCAACAT GSC PSTATATRC
Sbjct: 275 TGP*ASCSLWRNRWRSCAACATTGSCRSTSVAGATSSSSTACACVC*R*SRPSTATATRC 454
Query: 138 AWLTSARK 145
AW TSAR+
Sbjct: 455 AWPTSARR 478
>ref|XM_801883.1| Trypanosoma cruzi strain CL Brener hypothetical protein partial
mRNA
Length = 1287
Score = 40.0 bits (92), Expect = 0.26, Method: Composition-based stats.
Identities = 29/63 (46%), Positives = 34/63 (53%)
Frame = +2
Query: 36 WGGRRTLSWRRSCQRSLPASRPRWTTTSALTRACLSVWKTSGTGRUAFCSLWRSRWRSCA 95
W T R +C SL +SR +W T A +A LS +T G G A CS WRS WR CA
Sbjct: 209 WEESHTAKSRTNCLMSLRSSRRKWMTLFAQRKAFLSDSRTFGIGL*ASCSQWRSSWRLCA 388
Query: 96 ACA 98
AC
Sbjct: 389 ACG 397
>ref|XM_815122.1| Trypanosoma cruzi strain CL Brener hypothetical protein partial
mRNA
Length = 1287
Score = 39.3 bits (90), Expect = 0.47, Method: Composition-based stats.
Identities = 29/63 (46%), Positives = 34/63 (53%)
Frame = +2
Query: 36 WGGRRTLSWRRSCQRSLPASRPRWTTTSALTRACLSVWKTSGTGRUAFCSLWRSRWRSCA 95
W T R +C SL +SR +W T A +A LS +T G G A CS WRS WR CA
Sbjct: 209 WEESHTAKSRTNCLMSLRSSRRKWMTLFAQRKAFLSDSRTFGIGL*ASCSQWRSSWRLCA 388
Query: 96 ACA 98
AC
Sbjct: 389 ACG 397
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.324 0.125 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 594730738
Number of extensions: 10872341
Number of successful extensions: 134572
Number of sequences better than 10: 60
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 133867
Number of HSP's successfully gapped: 83
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 15 (7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.0 bits)
S2: 78 (34.7 bits)
Query= gi|154333587|ref|NC_009303.1|:subseq(453096,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 11
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
emb|AM494948.1| Leishmania braziliensis chromosome 11 263 1e-68
emb|AM920436.1| Penicillium chrysogenum Wisconsin 54-1255 comple... 35 5.5
>emb|AM494948.1| Leishmania braziliensis chromosome 11
Length = 558624
Score = 263 bits (673), Expect = 1e-68, Method: Composition-based stats.
Identities = 144/166 (86%), Positives = 144/166 (86%)
Frame = +1
Query: 1 PMGGDGLGRTSAPLLFFSPFDNRVCASLRWRRCGGVVSTEVSALXXXXXXXXXXXXXXXF 60
PMGGDGLGRTSAPLLFFSPFDNRVCASLRWRRCGGVVSTEVSAL F
Sbjct: 453097 PMGGDGLGRTSAPLLFFSPFDNRVCASLRWRRCGGVVSTEVSALAEKGGEGRGGRSGASF 453276
Query: 61 PGPAWEXXXXXXXVRVSLSGRCLRCLFPHERCRFPGTPSTSVRGMWPPFISSAVSLCPSR 120
PGPAWE VRVSLSGRCLRCLFPHERCRFPGTPSTSVRGMWPPFISSAVSLCPSR
Sbjct: 453277 PGPAWEPPSSPPPVRVSLSGRCLRCLFPHERCRFPGTPSTSVRGMWPPFISSAVSLCPSR 453456
Query: 121 SLCLFVWCAPGRGPTTLSIPHSTPLTICNRCSLPLCGTQHRTSSPH 166
SLCLFVWCAPGRGPTTLSIPHSTPLTICNRCSLPLCGTQHRTSSPH
Sbjct: 453457 SLCLFVWCAPGRGPTTLSIPHSTPLTICNRCSLPLCGTQHRTSSPH 453594
>emb|AM920436.1| Penicillium chrysogenum Wisconsin 54-1255 complete genome, contig Pc00c21
Length = 5624362
Score = 35.4 bits (80), Expect = 5.5, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -1
Query: 96 GTPSTSVRGMWPPFISSAVSLCPSRSLCLF-VWCAPGR 132
G +T V GMW I + VS P S+C F VWC GR
Sbjct: 169630 GARATDVDGMWKVLIDALVSRTPQLSMCCFCVWCGAGR 169517
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.326 0.140 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 765272194
Number of extensions: 16398386
Number of successful extensions: 147185
Number of sequences better than 10: 17
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 146943
Number of HSP's successfully gapped: 17
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 15 (7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.0 bits)
S2: 78 (34.7 bits)
Query= gi|154333587|ref|NC_009303.1|:subseq(453096,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 11
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
emb|AM494948.1| Leishmania braziliensis chromosome 11 206 2e-51
>emb|AM494948.1| Leishmania braziliensis chromosome 11
Length = 558624
Score = 206 bits (523), Expect = 2e-51, Method: Composition-based stats.
Identities = 121/166 (72%), Positives = 121/166 (72%)
Frame = +2
Query: 1 RWAAMGLEGHPRRCSFSPLSIIEFVHRCDGVAVEGXXXXXXXXXXXXXXXGGVGAQALLF 60
RWAAMGLEGHPRRCSFSPLSIIEFVHRCDGVAVEG GGVGAQALLF
Sbjct: 453098 RWAAMGLEGHPRRCSFSPLSIIEFVHRCDGVAVEGLSRLRSAPSLRREARGGVGAQALLF 453277
Query: 61 RAPRGSLPPHXXXXXXXXXXXXXXXXXPTSDAGSLGLPAQASGACGXXXXXXXXXXXXXV 120
RAPRGSLPPH PTSDAGSLGLPAQASGACG V
Sbjct: 453278 RAPRGSLPPHLLLCGSRSLAAASAACSPTSDAGSLGLPAQASGACGLPSSPLPFLFAPLV 453457
Query: 121 RFVCLFGVRLAAAPQHSPFLTQHPLPSATAAPSPCAVRSTAPLPRI 166
RFVCLFGVRLAAAPQHSPFLTQHPLPSATAAPSPCAVRSTAPLPRI
Sbjct: 453458 RFVCLFGVRLAAAPQHSPFLTQHPLPSATAAPSPCAVRSTAPLPRI 453595
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.323 0.138 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 487411492
Number of extensions: 6476400
Number of successful extensions: 76359
Number of sequences better than 10: 2
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 74921
Number of HSP's successfully gapped: 2
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 16 (7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 78 (34.7 bits)
Query= gi|154333587|ref|NC_009303.1|:subseq(453096,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 11
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
emb|AM494948.1| Leishmania braziliensis chromosome 11 216 2e-54
>emb|AM494948.1| Leishmania braziliensis chromosome 11
Length = 558624
Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats.
Identities = 126/166 (75%), Positives = 126/166 (75%)
Frame = +3
Query: 1 DGRRWAWKDIRAVALFLPFRXSSLCIAAMASLWRGCLDXXXXXXXXXXXXXXXXXXXFFS 60
DGRRWAWKDIRAVALFLPFR SSLCIAAMASLWRGCLD FFS
Sbjct: 453099 DGRRWAWKDIRAVALFLPFR*SSLCIAAMASLWRGCLD*GQRPR*EGRRGAGWALRRFFS 453278
Query: 61 GPRVGASLLTSSCAGXXXXXXXXXXXXXXXXXXXXDSQHKRQGHVASLHLLCRFSLPLSF 120
GPRVGASLLTSSCAG DSQHKRQGHVASLHLLCRFSLPLSF
Sbjct: 453279 GPRVGASLLTSSCAGLALWPLPPLPVPPRAMPVPWDSQHKRQGHVASLHLLCRFSLPLSF 453458
Query: 121 ALFVCLVCAWPRPHNTLHSSLNTPYHLQPLLPPPVRYAAPHLFPAF 166
ALFVCLVCAWPRPHNTLHSSLNTPYHLQPLLPPPVRYAAPHLFPAF
Sbjct: 453459 ALFVCLVCAWPRPHNTLHSSLNTPYHLQPLLPPPVRYAAPHLFPAF 453596
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.334 0.143 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 703507778
Number of extensions: 13091213
Number of successful extensions: 161579
Number of sequences better than 10: 3
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 161124
Number of HSP's successfully gapped: 3
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 15 (7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (19.6 bits)
S2: 78 (34.7 bits)
Query= gi|154333587|ref|NC_009303.1|:subseq(474056,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 11
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
ref|XM_001562984.1| Leishmania braziliensis MHOM/BR/75/M2904 ABC... 291 4e-77
emb|AM494948.1| Leishmania braziliensis chromosome 11 291 4e-77
ref|XM_001562983.1| Leishmania braziliensis MHOM/BR/75/M2904 ABC... 155 4e-36
ref|XM_001463885.1| Leishmania infantum JPCM5 ABC1 transporter, ... 84 1e-14
emb|AM502229.1| Leishmania infantum chromosome 11 84 1e-14
ref|XM_001681538.1| Leishmania major ABC1 transporter, putative ... 62 8e-08
>ref|XM_001562984.1| Leishmania braziliensis MHOM/BR/75/M2904 ABC1 transporter, putative
(LbrM11_V2.1010) partial mRNA
Length = 5451
Score = 291 bits (746), Expect = 4e-77, Method: Composition-based stats.
Identities = 162/166 (97%), Positives = 162/166 (97%)
Frame = +3
Query: 1 PQDAVLPDCVPSRLHSDRNAAESRAVPRPSVAHLRLCNVRR*GKSRGIDSRLRRAVGKRA 60
PQDAVLPDCVPSRLHSDRNAAESRAVPRPSVAHLRLCNVRR*GKSRGIDSRLRRAVGKRA
Sbjct: 3243 PQDAVLPDCVPSRLHSDRNAAESRAVPRPSVAHLRLCNVRR*GKSRGIDSRLRRAVGKRA 3422
Query: 61 APGRVUGEUDTFFDKWHALGLPAGHVVRARRVALRWCSV*USRDAWQLVLVCSKRFLREY 120
APGRV GE DTFFDKWHALGLPAGHVVRARRVALRWCSV* SRDAWQLVLVCSKRFLREY
Sbjct: 3423 APGRV*GE*DTFFDKWHALGLPAGHVVRARRVALRWCSV**SRDAWQLVLVCSKRFLREY 3602
Query: 121 ELASSGCYQPCHVLUPTCKEEWSGGGLRQAQRHFDA*AGTVERLDI 166
ELASSGCYQPCHVL PTCKEEWSGGGLRQAQRHFDA*AGTVERLDI
Sbjct: 3603 ELASSGCYQPCHVL*PTCKEEWSGGGLRQAQRHFDA*AGTVERLDI 3740
>emb|AM494948.1| Leishmania braziliensis chromosome 11
Length = 558624
Score = 291 bits (746), Expect = 4e-77, Method: Composition-based stats.
Identities = 162/166 (97%), Positives = 162/166 (97%)
Frame = +3
Query: 1 PQDAVLPDCVPSRLHSDRNAAESRAVPRPSVAHLRLCNVRR*GKSRGIDSRLRRAVGKRA 60
PQDAVLPDCVPSRLHSDRNAAESRAVPRPSVAHLRLCNVRR*GKSRGIDSRLRRAVGKRA
Sbjct: 474057 PQDAVLPDCVPSRLHSDRNAAESRAVPRPSVAHLRLCNVRR*GKSRGIDSRLRRAVGKRA 474236
Query: 61 APGRVUGEUDTFFDKWHALGLPAGHVVRARRVALRWCSV*USRDAWQLVLVCSKRFLREY 120
APGRV GE DTFFDKWHALGLPAGHVVRARRVALRWCSV* SRDAWQLVLVCSKRFLREY
Sbjct: 474237 APGRV*GE*DTFFDKWHALGLPAGHVVRARRVALRWCSV**SRDAWQLVLVCSKRFLREY 474416
Query: 121 ELASSGCYQPCHVLUPTCKEEWSGGGLRQAQRHFDA*AGTVERLDI 166
ELASSGCYQPCHVL PTCKEEWSGGGLRQAQRHFDA*AGTVERLDI
Sbjct: 474417 ELASSGCYQPCHVL*PTCKEEWSGGGLRQAQRHFDA*AGTVERLDI 474554
Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats.
Identities = 100/142 (70%), Positives = 106/142 (74%), Gaps = 6/142 (4%)
Frame = +3
Query: 1 PQDAVLPDCVPSRLHSDRNAAESRAVPRPSVAHLRLCNVRR*GKSRGIDSRLRRAVGKRA 60
PQDAVLPDCVPSRLHSDRNAAESRAVPRPSVAHLRLCNVRR*GKSRGIDSRLRRAVGKRA
Sbjct: 461988 PQDAVLPDCVPSRLHSDRNAAESRAVPRPSVAHLRLCNVRR*GKSRGIDSRLRRAVGKRA 462167
Query: 61 APGRVUGEUDTFFDKWHALGLPAGHVVRARRVALRWCSV*USRD------AWQLVLVCSK 114
APGRV GE D + LPAGHVVRAR VALR C V S +W++ +
Sbjct: 462168 APGRV*GE*DALHGCADVVRLPAGHVVRARHVALRRCVVHGSEHNCVLECSWRVARH*RE 462347
Query: 115 RFLREYELASSGCYQPCHVLUP 136
RF + L SGCYQPCHVL P
Sbjct: 462348 RFPVQLFLLPSGCYQPCHVL*P 462413
>ref|XM_001562983.1| Leishmania braziliensis MHOM/BR/75/M2904 ABC1 transporter, putative
(LbrM11_V2.1000) partial mRNA
Length = 5739
Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats.
Identities = 100/142 (70%), Positives = 106/142 (74%), Gaps = 6/142 (4%)
Frame = +3
Query: 1 PQDAVLPDCVPSRLHSDRNAAESRAVPRPSVAHLRLCNVRR*GKSRGIDSRLRRAVGKRA 60
PQDAVLPDCVPSRLHSDRNAAESRAVPRPSVAHLRLCNVRR*GKSRGIDSRLRRAVGKRA
Sbjct: 3504 PQDAVLPDCVPSRLHSDRNAAESRAVPRPSVAHLRLCNVRR*GKSRGIDSRLRRAVGKRA 3683
Query: 61 APGRVUGEUDTFFDKWHALGLPAGHVVRARRVALRWCSV*USRD------AWQLVLVCSK 114
APGRV GE D + LPAGHVVRAR VALR C V S +W++ +
Sbjct: 3684 APGRV*GE*DALHGCADVVRLPAGHVVRARHVALRRCVVHGSEHNCVLECSWRVARH*RE 3863
Query: 115 RFLREYELASSGCYQPCHVLUP 136
RF + L SGCYQPCHVL P
Sbjct: 3864 RFPVQLFLLPSGCYQPCHVL*P 3929
>ref|XM_001463885.1| Leishmania infantum JPCM5 ABC1 transporter, putative (LinJ11.1220)
partial mRNA
Length = 5418
Score = 84.3 bits (207), Expect = 1e-14, Method: Composition-based stats.
Identities = 68/143 (47%), Positives = 83/143 (58%), Gaps = 7/143 (4%)
Frame = +3
Query: 1 PQDAVLPDCVPSRLHSDRNAAESRAVPRPSVAHLRLCNVRR*GKSRGIDSRLRRAVGKRA 60
P+DAVLPDCVP +H DR+AAE RAVPRPSVA+++L +VR LRR VG R+
Sbjct: 3180 PEDAVLPDCVPGCVHPDRHAAEPRAVPRPSVAYVQLLDVREPTDFCAGHIVLRRDVGWRS 3359
Query: 61 -APGRVUGEUDTFFDKWHALGLPAGHVVRARRVALRWCSV-*USRDAWQLVLVCSKRFLR 118
G + GE D+ A+GLPAG+VVRAR ALR C V * RD + R R
Sbjct: 3360 DGRGGLRGERDSLDGCAGAVGLPAGYVVRARHAALRRCVVH*SERDGAAEICG*VARHQR 3539
Query: 119 E-----YELASSGCYQPCHVLUP 136
E LA SG +P +VL P
Sbjct: 3540 ERVPVQLLLAPSGWAEPRNVLRP 3608
>emb|AM502229.1| Leishmania infantum chromosome 11
Length = 575805
Score = 84.3 bits (207), Expect = 1e-14, Method: Composition-based stats.
Identities = 68/143 (47%), Positives = 83/143 (58%), Gaps = 7/143 (4%)
Frame = +2
Query: 1 PQDAVLPDCVPSRLHSDRNAAESRAVPRPSVAHLRLCNVRR*GKSRGIDSRLRRAVGKRA 60
P+DAVLPDCVP +H DR+AAE RAVPRPSVA+++L +VR LRR VG R+
Sbjct: 504500 PEDAVLPDCVPGCVHPDRHAAEPRAVPRPSVAYVQLLDVREPTDFCAGHIVLRRDVGWRS 504679
Query: 61 -APGRVUGEUDTFFDKWHALGLPAGHVVRARRVALRWCSV-*USRDAWQLVLVCSKRFLR 118
G + GE D+ A+GLPAG+VVRAR ALR C V * RD + R R
Sbjct: 504680 DGRGGLRGERDSLDGCAGAVGLPAGYVVRARHAALRRCVVH*SERDGAAEICG*VARHQR 504859
Query: 119 E-----YELASSGCYQPCHVLUP 136
E LA SG +P +VL P
Sbjct: 504860 ERVPVQLLLAPSGWAEPRNVLRP 504928
Score = 37.0 bits (84), Expect = 2.4, Method: Composition-based stats.
Identities = 34/80 (42%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Frame = +3
Query: 63 GRVUGEUDTFFDKWHALGLPAGHVVRARRVALRWCSV-*USRDAWQLVLVCSKRFLRE-- 119
G + GE D+ A+GLPAG+VVRAR ALR C V * RD + R RE
Sbjct: 497418 GGLRGERDSLDGCAGAVGLPAGYVVRARHAALRRCVVH*SERDGAAEICG*VARHQRERV 497597
Query: 120 ---YELASSGCYQPCHVLUP 136
LA SG +P +VL P
Sbjct: 497598 PVQLLLAPSGWAEPRNVLRP 497657
Score = 36.2 bits (82), Expect = 3.6, Method: Composition-based stats.
Identities = 34/80 (42%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Frame = +2
Query: 63 GRVUGEUDTFFDKWHALGLPAGHVVRARRVALRWCSV-*USRDAWQLVLVCSKRFLRE-- 119
G + GE D+ A+GLPAG+VVRAR ALR C V * RD + R RE
Sbjct: 520109 GGLRGERDSLDGCAGAVGLPAGYVVRARHAALRRCVVH*SERDGAAEICG*VARHQRERV 520288
Query: 120 ---YELASSGCYQPCHVLUP 136
LA SG +P +VL P
Sbjct: 520289 PVQLLLAPSGWAEPRNVLRP 520348
>ref|XM_001681538.1| Leishmania major ABC1 transporter, putative (LmjF11.1240) mRNA,
complete cds
Length = 5412
Score = 61.6 bits (148), Expect = 8e-08, Method: Composition-based stats.
Identities = 43/88 (48%), Positives = 53/88 (60%), Gaps = 1/88 (1%)
Frame = +3
Query: 1 PQDAVLPDCVPSRLHSDRNAAESRAVPRPSVAHLRLCNVRR*GKSRGIDSRLRRAVGKRA 60
PQDAVLPDCVP +H D AAE RAVPR SVA ++L +VR LRR VG A
Sbjct: 3174 PQDAVLPDCVPGCVHPDCYAAEPRAVPRSSVADVQLLDVREPADVSAGHIVLRRYVGWGA 3353
Query: 61 -APGRVUGEUDTFFDKWHALGLPAGHVV 87
G + G+ D+ A+GLPAG++V
Sbjct: 3354 DGRGGLRGKRDSLDGCAGAVGLPAGYMV 3437
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.334 0.143 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 603993114
Number of extensions: 10017458
Number of successful extensions: 82139
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 82128
Number of HSP's successfully gapped: 0
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 15 (7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (19.6 bits)
S2: 78 (34.7 bits)
Query= gi|154333587|ref|NC_009303.1|:subseq(474056,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 11
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
ref|XM_001562984.1| Leishmania braziliensis MHOM/BR/75/M2904 ABC... 356 1e-96
emb|AM494948.1| Leishmania braziliensis chromosome 11 356 1e-96
ref|XM_001562983.1| Leishmania braziliensis MHOM/BR/75/M2904 ABC... 247 7e-64
ref|XM_001681538.1| Leishmania major ABC1 transporter, putative ... 189 2e-46
ref|XM_001463885.1| Leishmania infantum JPCM5 ABC1 transporter, ... 187 1e-45
emb|AM502229.1| Leishmania infantum chromosome 11 187 1e-45
ref|XM_813005.1| Trypanosoma cruzi strain CL Brener ATP-binding ... 112 4e-23
gb|AF230978.1| Trypanosoma cruzi ABCA1 transporter gene, complet... 109 3e-22
ref|XM_001681540.1| Leishmania major ABC transporter-like protei... 99 4e-19
ref|XM_001681537.1| Leishmania major ABC transporter-like protei... 99 4e-19
ref|XM_001463887.1| Leishmania infantum JPCM5 ABC transporter, p... 94 2e-17
ref|XM_001681541.1| Leishmania major ABC transporter, putative (... 93 3e-17
ref|XM_001562985.1| Leishmania braziliensis MHOM/BR/75/M2904 ABC... 82 6e-14
ref|XM_001562987.1| Leishmania braziliensis MHOM/BR/75/M2904 ABC... 75 8e-12
ref|XM_001681937.1| Leishmania major ABC1 transporter-like prote... 75 1e-11
ref|XM_001681543.1| Leishmania major ABC transporter, putative (... 74 2e-11
emb|AM502233.1| Leishmania infantum chromosome 15 70 3e-10
ref|XM_823593.1| Trypanosoma brucei TREU927 ABC transporter (Tb1... 67 2e-09
ref|XM_001562979.1| Leishmania braziliensis MHOM/BR/75/M2904 ABC... 65 6e-09
ref|XM_001462682.1| Leishmania infantum JPCM5 ABC1 transporter, ... 64 2e-08
emb|AM502220.1| Leishmania infantum chromosome 2 64 2e-08
ref|XM_001563480.1| Leishmania braziliensis MHOM/BR/75/M2904 ABC... 64 2e-08
emb|AM494952.1| Leishmania braziliensis chromosome 15 64 2e-08
ref|XM_804764.1| Trypanosoma cruzi strain CL Brener ABC transpor... 63 2e-08
ref|XM_801794.1| Trypanosoma cruzi strain CL Brener ABC transpor... 62 6e-08
gb|CP000078.1| Leishmania major strain Friedlin chromosome 2, co... 62 8e-08
ref|XM_817136.1| Leishmania major ABC1 transporter, putative (Lm... 62 8e-08
ref|XM_001681539.1| Leishmania major ABC transporter, putative (... 56 5e-06
ref|XM_001681536.1| Leishmania major ABC transporter, putative (... 56 5e-06
ref|XM_001466294.1| Leishmania infantum JPCM5 ABC transporter (L... 55 8e-06
emb|AM502245.1| Leishmania infantum chromosome 27 55 8e-06
gb|AF200948.1| Leishmania tropica ABC1 transporter (abc1) gene, ... 55 8e-06
gb|CP000079.1| Leishmania major strain Friedlin chromosome 27, c... 54 1e-05
ref|XM_842958.1| Leishmania major strain Friedlin ABC transporte... 54 1e-05
ref|XM_842959.1| Leishmania major strain Friedlin ABC transporte... 54 1e-05
ref|XM_001463886.1| Leishmania infantum JPCM5 ABC transporter, p... 54 2e-05
ref|XM_001463883.1| Leishmania infantum JPCM5 ABC transporter, p... 54 2e-05
gb|AF335476.1| Leishmania tropica ABCA1.2 transporter gene, part... 54 2e-05
ref|XM_001565814.1| Leishmania braziliensis MHOM/BR/75/M2904 ABC... 53 3e-05
emb|AM494964.1| Leishmania braziliensis chromosome 27 53 3e-05
ref|XM_001463889.1| Leishmania infantum JPCM5 ABC transporter, p... 52 9e-05
ref|XM_001561498.1| Leishmania braziliensis MHOM/BR/75/M2904 ABC... 51 2e-04
emb|AM494939.1| Leishmania braziliensis chromosome 2 50 2e-04
ref|XM_001463884.1| Leishmania infantum JPCM5 ABC1 transporter, ... 49 7e-04
ref|XM_812232.1| Trypanosoma cruzi strain CL Brener ABC transpor... 49 7e-04
ref|NG_009370.1| Homo sapiens glypican 5 (GPC5) on chromosome 13 36 3.4
emb|AL596221.3| Human DNA sequence from clone RP11-67I22 on chro... 36 3.4
gb|CP000750.2| Kineococcus radiotolerans SRS30216, complete genome 36 4.5
>ref|XM_001562984.1| Leishmania braziliensis MHOM/BR/75/M2904 ABC1 transporter, putative
(LbrM11_V2.1010) partial mRNA
Length = 5451
Score = 356 bits (914), Expect = 1e-96, Method: Composition-based stats.
Identities = 166/166 (100%), Positives = 166/166 (100%)
Frame = +1
Query: 1 RKMQCFQIVCPVVCILIAMLLSLVQYRDPQSLTYDYAMFAGKANPVVLTAGCDALWGSEP 60
RKMQCFQIVCPVVCILIAMLLSLVQYRDPQSLTYDYAMFAGKANPVVLTAGCDALWGSEP
Sbjct: 3244 RKMQCFQIVCPVVCILIAMLLSLVQYRDPQSLTYDYAMFAGKANPVVLTAGCDALWGSEP 3423
Query: 61 RPVGYEVNETHFSTSGMLSDYLLDTWYVHDVSRFGGVACNDPEMRGNLSSYVQNVFFVNT 120
RPVGYEVNETHFSTSGMLSDYLLDTWYVHDVSRFGGVACNDPEMRGNLSSYVQNVFFVNT
Sbjct: 3424 RPVGYEVNETHFSTSGMLSDYLLDTWYVHDVSRFGGVACNDPEMRGNLSSYVQNVFFVNT 3603
Query: 121 SSRHQAAISLATYYDLLAKKSGVEGVYVKHSATLMHKPEPLSGLTF 166
SSRHQAAISLATYYDLLAKKSGVEGVYVKHSATLMHKPEPLSGLTF
Sbjct: 3604 SSRHQAAISLATYYDLLAKKSGVEGVYVKHSATLMHKPEPLSGLTF 3741
>emb|AM494948.1| Leishmania braziliensis chromosome 11
Length = 558624
Score = 356 bits (914), Expect = 1e-96, Method: Composition-based stats.
Identities = 166/166 (100%), Positives = 166/166 (100%)
Frame = +1
Query: 1 RKMQCFQIVCPVVCILIAMLLSLVQYRDPQSLTYDYAMFAGKANPVVLTAGCDALWGSEP 60
RKMQCFQIVCPVVCILIAMLLSLVQYRDPQSLTYDYAMFAGKANPVVLTAGCDALWGSEP
Sbjct: 474058 RKMQCFQIVCPVVCILIAMLLSLVQYRDPQSLTYDYAMFAGKANPVVLTAGCDALWGSEP 474237
Query: 61 RPVGYEVNETHFSTSGMLSDYLLDTWYVHDVSRFGGVACNDPEMRGNLSSYVQNVFFVNT 120
RPVGYEVNETHFSTSGMLSDYLLDTWYVHDVSRFGGVACNDPEMRGNLSSYVQNVFFVNT
Sbjct: 474238 RPVGYEVNETHFSTSGMLSDYLLDTWYVHDVSRFGGVACNDPEMRGNLSSYVQNVFFVNT 474417
Query: 121 SSRHQAAISLATYYDLLAKKSGVEGVYVKHSATLMHKPEPLSGLTF 166
SSRHQAAISLATYYDLLAKKSGVEGVYVKHSATLMHKPEPLSGLTF
Sbjct: 474418 SSRHQAAISLATYYDLLAKKSGVEGVYVKHSATLMHKPEPLSGLTF 474555
Score = 247 bits (631), Expect = 7e-64, Method: Composition-based stats.
Identities = 122/173 (70%), Positives = 137/173 (79%), Gaps = 7/173 (4%)
Frame = +1
Query: 1 RKMQCFQIVCPVVCILIAMLLSLVQYRDPQSLTYDYAMFAGKANPVVLTAGCDALWGSEP 60
RKMQCFQIVCPVVCILIAMLLSLVQYRDPQSLTYDYAMFAGKANPVVLTAGCDALWGSEP
Sbjct: 461989 RKMQCFQIVCPVVCILIAMLLSLVQYRDPQSLTYDYAMFAGKANPVVLTAGCDALWGSEP 462168
Query: 61 RPVGYEVNETHFSTSGMLSDYLLDTWYVHDVSRFGGVACNDPEMRGNLSSYVQ------N 114
RPVGYEVNETHF + MLSDYLLDTWYVHD+SR+G V+C D + LS+ + N
Sbjct: 462169 RPVGYEVNETHFMGAQMLSDYLLDTWYVHDMSRYGAVSCMDRNITAFLSAVGEWRGTDVN 462348
Query: 115 VFFVNTSSRHQAAISLATYYDLLAKK-SGVEGVYVKHSATLMHKPEPLSGLTF 166
VF N+SS HQAAISLATYYDL K+ G V++++S L +KP + L F
Sbjct: 462349 VFLYNSSSFHQAAISLATYYDLFFKELLGTNNVFMRYSVELFNKPSGDTHLGF 462507
Score = 82.0 bits (201), Expect = 6e-14, Method: Composition-based stats.
Identities = 55/156 (35%), Positives = 81/156 (51%), Gaps = 1/156 (0%)
Frame = +3
Query: 1 RKMQCFQIVCPVVCILIAMLLSLVQYRDPQSLTYDYAMFAGKANPVVLTAGCDALWGSEP 60
RKMQ FQIVCPV+C+L AMLLSL+ ++T + ++ G+ VV GC+ L G
Sbjct: 484611 RKMQFFQIVCPVICVLTAMLLSLISLSGLDAITLNKEIYPGEV--VVEMNGCEELLGPNA 484784
Query: 61 RPVGYEVNETHFSTSGMLSDYLLDTWYVHDVSRFGGVACNDPEMRGNLSSYVQNVFFV-N 119
+ V H+ + +S Y++DT+ R G+ C DP+ N+ NV + N
Sbjct: 484785 SFDNFTVRHQHYMNARNVSVYMVDTFLSQPTLRVEGLVCRDPDW-ANVVKVQNNVIHILN 484961
Query: 120 TSSRHQAAISLATYYDLLAKKSGVEGVYVKHSATLM 155
+S+ HQ IS+ + Y L KK +G K A M
Sbjct: 484962 SSTYHQGPISVNSVYQALYKKYTGKGARFKLVAGTM 485069
Score = 74.7 bits (182), Expect = 8e-12, Method: Composition-based stats.
Identities = 42/137 (30%), Positives = 73/137 (53%), Gaps = 3/137 (2%)
Frame = +2
Query: 1 RKMQCFQIVCPVVCILIAMLLSLVQYRDPQSLTYDYAMFAGKANPVVLTAGCDALWGSEP 60
R+MQCFQ++CPVVCIL+AM+L++V++ + + MF V +GC+A +G+
Sbjct: 497390 RRMQCFQVICPVVCILLAMVLTVVKFTETGFIDLSSEMFGETVQMQV--SGCEAYFGATH 497563
Query: 61 RPV--GYEVNETHFSTSGMLSDYLLDTWYVHDVSRFGGVACNDPEMRGNLSSYVQ-NVFF 117
G + + +F++ LS Y DT + R+ + C DP ++ + + + F
Sbjct: 497564 NVTRQGSYITDLNFASGADLSFYATDTALQLAMPRYTSLFCGDPGLQDTVPFELDAAILF 497743
Query: 118 VNTSSRHQAAISLATYY 134
NTS+ H + + L Y
Sbjct: 497744 YNTSAYHASGLVLQQLY 497794
Score = 65.5 bits (158), Expect = 6e-09, Method: Composition-based stats.
Identities = 41/138 (29%), Positives = 71/138 (51%), Gaps = 3/138 (2%)
Frame = +2
Query: 1 RKMQCFQIVCPVVCILIAMLLSLVQYRDPQSLTYDYAMFAGKANPVVLTAGCDALWGSEP 60
R+ Q FQ+VCPV+C+L+AMLL L++ ++T ++ + + AGC + +
Sbjct: 442214 RRTQFFQVVCPVLCVLLAMLLMLIKLFQSPAITLSSDLYGTQVE--IDVAGCASAM-NLT 442384
Query: 61 RPVG---YEVNETHFSTSGMLSDYLLDTWYVHDVSRFGGVACNDPEMRGNLSSYVQNVFF 117
P G V ++ LS Y+L+T+ H++ R+ G+ACND + V +
Sbjct: 442385 IPFGSMTTTVQPPGVNSISSLSAYMLETYNTHEMERYSGLACNDTTSFPAPGTAASGVIY 442564
Query: 118 VNTSSRHQAAISLATYYD 135
N+S+ H + I L Y+
Sbjct: 442565 -NSSALHSSGIGLFNLYN 442615
>ref|XM_001562983.1| Leishmania braziliensis MHOM/BR/75/M2904 ABC1 transporter, putative
(LbrM11_V2.1000) partial mRNA
Length = 5739
Score = 247 bits (631), Expect = 7e-64, Method: Composition-based stats.
Identities = 122/173 (70%), Positives = 137/173 (79%), Gaps = 7/173 (4%)
Frame = +1
Query: 1 RKMQCFQIVCPVVCILIAMLLSLVQYRDPQSLTYDYAMFAGKANPVVLTAGCDALWGSEP 60
RKMQCFQIVCPVVCILIAMLLSLVQYRDPQSLTYDYAMFAGKANPVVLTAGCDALWGSEP
Sbjct: 3505 RKMQCFQIVCPVVCILIAMLLSLVQYRDPQSLTYDYAMFAGKANPVVLTAGCDALWGSEP 3684
Query: 61 RPVGYEVNETHFSTSGMLSDYLLDTWYVHDVSRFGGVACNDPEMRGNLSSYVQ------N 114
RPVGYEVNETHF + MLSDYLLDTWYVHD+SR+G V+C D + LS+ + N
Sbjct: 3685 RPVGYEVNETHFMGAQMLSDYLLDTWYVHDMSRYGAVSCMDRNITAFLSAVGEWRGTDVN 3864
Query: 115 VFFVNTSSRHQAAISLATYYDLLAKK-SGVEGVYVKHSATLMHKPEPLSGLTF 166
VF N+SS HQAAISLATYYDL K+ G V++++S L +KP + L F
Sbjct: 3865 VFLYNSSSFHQAAISLATYYDLFFKELLGTNNVFMRYSVELFNKPSGDTHLGF 4023
>ref|XM_001681538.1| Leishmania major ABC1 transporter, putative (LmjF11.1240) mRNA,
complete cds
Length = 5412
Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats.
Identities = 96/174 (55%), Positives = 119/174 (68%), Gaps = 8/174 (4%)
Frame = +1
Query: 1 RKMQCFQIVCPVVCILIAMLLSLVQYRDPQSLTYDYAMFAGKANPVVLTAGCDALWGSEP 60
RKMQCFQIVCPVVCILIAMLL+LVQYRDPQSLTY+Y+MFA + V+ T+ CD +WG P
Sbjct: 3175 RKMQCFQIVCPVVCILIAMLLNLVQYRDPQSLTYNYSMFANRPTSVLDTSFCDVMWGGAP 3354
Query: 61 R-PVGYEVNETHFSTSGMLSDYLLDTWYVHDVSRFGGVACNDPEMRGNLSSYVQ------ 113
V YEVNETH + + LSDYLLDTWYVHD+ R+G V+C D + L +
Sbjct: 3355 TGAVDYEVNETHLTGAQALSDYLLDTWYVHDMPRYGAVSCIDRNVTALLRFADEWRGTNV 3534
Query: 114 NVFFVNTSSRHQAAISLATYYDLLAKKS-GVEGVYVKHSATLMHKPEPLSGLTF 166
NVF N+SS HQA +SLATYYDL K G + ++++ A L ++P S L F
Sbjct: 3535 NVFLYNSSSHHQAGLSLATYYDLFIKSFLGRDSAFMRYEAELFNEPASQSQLGF 3696
>ref|XM_001463885.1| Leishmania infantum JPCM5 ABC1 transporter, putative (LinJ11.1220)
partial mRNA
Length = 5418
Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats.
Identities = 94/174 (54%), Positives = 119/174 (68%), Gaps = 8/174 (4%)
Frame = +1
Query: 1 RKMQCFQIVCPVVCILIAMLLSLVQYRDPQSLTYDYAMFAGKANPVVLTAGCDALWGSEP 60
RKMQCFQIVCPVVCILIAMLL+LV+YRDPQSLTY+Y+MFA + V+ T+ CDA+WG P
Sbjct: 3181 RKMQCFQIVCPVVCILIAMLLNLVRYRDPQSLTYNYSMFANRPTSVLDTSFCDAMWGGAP 3360
Query: 61 R-PVGYEVNETHFSTSGMLSDYLLDTWYVHDVSRFGGVACNDPEMRGNLSSYVQ------ 113
V YEVNETH + + LSDYLLDTWYVHD+ R+G V+C D + L +
Sbjct: 3361 TGAVDYEVNETHLTGAQALSDYLLDTWYVHDMPRYGAVSCIDRNVTALLRFADEWRGTNV 3540
Query: 114 NVFFVNTSSRHQAAISLATYYDLLAKKS-GVEGVYVKHSATLMHKPEPLSGLTF 166
NVF N+SS HQA ++LATYYDL K G + ++++ L ++P S L F
Sbjct: 3541 NVFLYNSSSHHQAGLNLATYYDLFIKSFLGRDSAFMRYKVELFNEPASQSQLGF 3702
>emb|AM502229.1| Leishmania infantum chromosome 11
Length = 575805
Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats.
Identities = 94/174 (54%), Positives = 119/174 (68%), Gaps = 8/174 (4%)
Frame = +3
Query: 1 RKMQCFQIVCPVVCILIAMLLSLVQYRDPQSLTYDYAMFAGKANPVVLTAGCDALWGSEP 60
RKMQCFQIVCPVVCILIAMLL+LV+YRDPQSLTY+Y+MFA + V+ T+ CDA+WG P
Sbjct: 504501 RKMQCFQIVCPVVCILIAMLLNLVRYRDPQSLTYNYSMFANRPTSVLDTSFCDAMWGGAP 504680
Query: 61 R-PVGYEVNETHFSTSGMLSDYLLDTWYVHDVSRFGGVACNDPEMRGNLSSYVQ------ 113
V YEVNETH + + LSDYLLDTWYVHD+ R+G V+C D + L +
Sbjct: 504681 TGAVDYEVNETHLTGAQALSDYLLDTWYVHDMPRYGAVSCIDRNVTALLRFADEWRGTNV 504860
Query: 114 NVFFVNTSSRHQAAISLATYYDLLAKKS-GVEGVYVKHSATLMHKPEPLSGLTF 166
NVF N+SS HQA ++LATYYDL K G + ++++ L ++P S L F
Sbjct: 504861 NVFLYNSSSHHQAGLNLATYYDLFIKSFLGRDSAFMRYKVELFNEPASQSQLGF 505022
Score = 96.7 bits (239), Expect = 2e-18, Method: Composition-based stats.
Identities = 53/121 (43%), Positives = 71/121 (58%), Gaps = 8/121 (6%)
Frame = +3
Query: 54 ALWGSEPR-PVGYEVNETHFSTSGMLSDYLLDTWYVHDVSRFGGVACNDPEMRGNLSSYV 112
A W + P V YEVNETH + + LSDYLLDTWYVHD+ R+G V+C D + L
Sbjct: 520080 ACWRAAPTGAVDYEVNETHLTGAQALSDYLLDTWYVHDMPRYGAVSCIDRNVTALLRFAD 520259
Query: 113 Q------NVFFVNTSSRHQAAISLATYYDLLAKKS-GVEGVYVKHSATLMHKPEPLSGLT 165
+ NVF N+SS HQA ++LATYYDL K G + ++++ L ++P S L
Sbjct: 520260 EWRGTNVNVFLYNSSSHHQAGLNLATYYDLFIKSFLGRDSAFMRYKVELFNEPASQSQLG 520439
Query: 166 F 166
F
Sbjct: 520440 F 520442
Score = 95.1 bits (235), Expect = 6e-18, Method: Composition-based stats.
Identities = 53/121 (43%), Positives = 71/121 (58%), Gaps = 8/121 (6%)
Frame = +1
Query: 54 ALWGSEPR-PVGYEVNETHFSTSGMLSDYLLDTWYVHDVSRFGGVACNDPEMRGNLSSYV 112
A W + P V YEVNETH + + LSDYLLDTWYVHD+ R+G V+C D + L
Sbjct: 497389 ACWRAAPTGAVDYEVNETHLTGAQALSDYLLDTWYVHDMPRYGAVSCIDRNVTALLRFAD 497568
Query: 113 Q------NVFFVNTSSRHQAAISLATYYDLLAKKS-GVEGVYVKHSATLMHKPEPLSGLT 165
+ NVF N+SS HQA ++LATYYDL K G + ++++ L ++P S L
Sbjct: 497569 EWRGTNVNVFLYNSSSHHQAGLNLATYYDLFIKSFLGRDSAFMRYKVELFNEPASQSQLG 497748
Query: 166 F 166
F
Sbjct: 497749 F 497751
Score = 93.6 bits (231), Expect = 2e-17, Method: Composition-based stats.
Identities = 49/140 (35%), Positives = 76/140 (54%)
Frame = +3
Query: 1 RKMQCFQIVCPVVCILIAMLLSLVQYRDPQSLTYDYAMFAGKANPVVLTAGCDALWGSEP 60
RKMQ FQ+VCPV+CILIAMLLSL+ P ++T + ++ G+ +V GCD L G
Sbjct: 525417 RKMQFFQVVCPVICILIAMLLSLISLNGPDTITLNKEIYPGEV--LVEMNGCDELLGPNA 525590
Query: 61 RPVGYEVNETHFSTSGMLSDYLLDTWYVHDVSRFGGVACNDPEMRGNLSSYVQNVFFVNT 120
+ V + + LS Y++DT+ R G+ C DP+ + + + +N+
Sbjct: 525591 SFDNFTVRHQKYMNALNLSTYMVDTFLSQPTLRVEGLVCRDPDWANAVKTPNNVIHILNS 525770
Query: 121 SSRHQAAISLATYYDLLAKK 140
S+ HQ IS+ + Y L +K
Sbjct: 525771 STYHQGPISVNSIYQALYRK 525830
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 42/145 (28%), Positives = 67/145 (46%), Gaps = 11/145 (7%)
Frame = +3
Query: 2 KMQCFQIVCPVVCILIAMLLSLVQYRDPQSLTYDYAMFAGKANPVVLTAGCD-ALWGSEP 60
+ Q FQI CP++C+L+AMLL+L++ ++T ++ + GC+ A+ S P
Sbjct: 492723 RTQFFQIACPMLCVLLAMLLTLIKLFQYPAITLSSDLYGTVVE--IDVVGCESAMNLSIP 492896
Query: 61 -RPVGYEVNETHFSTSGMLSDYLLDTWYVHDVSRFGGVACND---------PEMRGNLSS 110
V ++ LS Y+L+T+ H R+ G+ C D PE R
Sbjct: 492897 FSSKAVTVQPPSATSIATLSSYMLETYNTHKAERYTGLVCVDAVTFPLPFTPENRS---- 493064
Query: 111 YVQNVFFVNTSSRHQAAISLATYYD 135
V V + NTS H + I L Y+
Sbjct: 493065 -VSAVIY-NTSGLHSSPIGLYNLYN 493133
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 39/140 (27%), Positives = 66/140 (47%), Gaps = 5/140 (3%)
Frame = +1
Query: 1 RKMQCFQIVCPVVCILIAMLLSLVQYRDPQSLTYDYAMFAGKANPVVLTAGCD-ALWGSE 59
R+ Q FQI CP++C+L+AMLL+L++ ++T ++ + GC+ A+ S
Sbjct: 515407 RRTQFFQIACPMLCVLLAMLLTLIKLFQYPAITLSSDLYGTVVE--IDVVGCESAMNLSI 515580
Query: 60 P-RPVGYEVNETHFSTSGMLSDYLLDTWYVHDVSRFGGVACNDP---EMRGNLSSYVQNV 115
P V ++ LS Y+L+T+ H R+ G+ C D + S + +
Sbjct: 515581 PFSSKAVTVQPPSATSVATLSSYMLETYDTHLAERYTGLVCADTIAVPVPITPSDWNVSA 515760
Query: 116 FFVNTSSRHQAAISLATYYD 135
NTS H + I L Y+
Sbjct: 515761 VIYNTSGLHSSPIGLYNLYN 515820
Score = 51.6 bits (122), Expect = 9e-05, Method: Composition-based stats.
Identities = 45/137 (32%), Positives = 69/137 (50%), Gaps = 3/137 (2%)
Frame = +2
Query: 1 RKMQCFQIVCPVVCILIAMLLSLVQYRDPQSLTYDYAMFAGKANPVVLTAGCDALWGSEP 60
RKMQCFQ+VCPVVC+++AMLL+L + + SL+ MF V +GC+ +G+
Sbjct: 539576 RKMQCFQVVCPVVCVMVAMLLTLFSFTEAGSLSLTSEMFGETVQMQV--SGCEKYFGATN 539749
Query: 61 RPV--GYEVNETHFSTSGMLSDYLLDTWYVHDVSRFGGVACNDPEMRGNLSSYVQNVF-F 117
G + + +F+ LS Y DT + R+ + C DP ++ + F F
Sbjct: 539750 NVTRQGSYITDLNFANGQDLSFYATDTAKQLTMPRYTSLFCGDPGLQHVVPFEFDATFLF 539929
Query: 118 VNTSSRHQAAISLATYY 134
NTS+ H + L Y
Sbjct: 539930 YNTSAYHAGGLVLQQLY 539980
>ref|XM_813005.1| Trypanosoma cruzi strain CL Brener ATP-binding cassette transporter
ABCA1 partial mRNA
Length = 5253
Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats.
Identities = 51/139 (36%), Positives = 80/139 (57%)
Frame = +1
Query: 1 RKMQCFQIVCPVVCILIAMLLSLVQYRDPQSLTYDYAMFAGKANPVVLTAGCDALWGSEP 60
R+MQCFQ+VCP C+L+AMLL LV ++ Q L + ++ K ++ TA C+ WG +P
Sbjct: 3043 RRMQCFQLVCPFFCVLLAMLLGLVSFKKNQELNLSFDLYNEKV--LLDTAQCEDFWGEKP 3216
Query: 61 RPVGYEVNETHFSTSGMLSDYLLDTWYVHDVSRFGGVACNDPEMRGNLSSYVQNVFFVNT 120
VNETHF + L Y DTW+ H++ R+ ++C D ++ + + NT
Sbjct: 3217 LLSNLIVNETHFGNAVELGSYTSDTWFSHEMPRYASISCIDRDLYWKMGKINPIIMLHNT 3396
Query: 121 SSRHQAAISLATYYDLLAK 139
S+ HQ +++A +Y LL K
Sbjct: 3397 SAIHQTGVTMAAFYQLLYK 3453
>gb|AF230978.1| Trypanosoma cruzi ABCA1 transporter gene, complete cds
Length = 5253
Score = 109 bits (272), Expect = 3e-22, Method: Composition-based stats.
Identities = 50/139 (35%), Positives = 79/139 (56%)
Frame = +1
Query: 1 RKMQCFQIVCPVVCILIAMLLSLVQYRDPQSLTYDYAMFAGKANPVVLTAGCDALWGSEP 60
R+M CFQ+VCP C+L+AMLL LV ++ Q L + ++ K ++ TA C+ WG +P
Sbjct: 3043 RRMLCFQLVCPFFCVLLAMLLGLVSFKKNQELNLSFDLYNEKV--LLDTAQCEDFWGQKP 3216
Query: 61 RPVGYEVNETHFSTSGMLSDYLLDTWYVHDVSRFGGVACNDPEMRGNLSSYVQNVFFVNT 120
VNETHF + L Y DTW+ H++ R+ ++C D ++ + + NT
Sbjct: 3217 LLSNVLVNETHFGNAVELGSYTSDTWFSHEMPRYASISCIDRDLYWKMGKINPIIMLHNT 3396
Query: 121 SSRHQAAISLATYYDLLAK 139
S+ HQ +++A +Y LL K
Sbjct: 3397 SAIHQTGVTMAAFYQLLYK 3453
>ref|XM_001681540.1| Leishmania major ABC transporter-like protein (LmjF11.1260) partial
mRNA
Length = 741
Score = 99.4 bits (246), Expect = 4e-19, Method: Composition-based stats.
Identities = 52/111 (46%), Positives = 68/111 (61%), Gaps = 7/111 (6%)
Frame = +1
Query: 63 VGYEVNETHFSTSGMLSDYLLDTWYVHDVSRFGGVACNDPEMRGNLSSYVQ------NVF 116
V YEVNETH + + LSDYLLDTWYVHD+ R+G V+C D + L + NVF
Sbjct: 10 VDYEVNETHLTGAQALSDYLLDTWYVHDMPRYGAVSCIDRNVTALLRFADEWRGTNVNVF 189
Query: 117 FVNTSSRHQAAISLATYYDLLAKKS-GVEGVYVKHSATLMHKPEPLSGLTF 166
N+SS HQA +SLATYYDL K G + ++++ A L ++P S L F
Sbjct: 190 LYNSSSHHQAGLSLATYYDLFIKSFLGRDSAFMRYEAELFNEPASQSQLGF 342
>ref|XM_001681537.1| Leishmania major ABC transporter-like protein (LmjF11.1230) partial
mRNA
Length = 741
Score = 99.0 bits (245), Expect = 4e-19, Method: Composition-based stats.
Identities = 52/111 (46%), Positives = 68/111 (61%), Gaps = 7/111 (6%)
Frame = +1
Query: 63 VGYEVNETHFSTSGMLSDYLLDTWYVHDVSRFGGVACNDPEMRGNLSSYVQ------NVF 116
V YEVNETH + + LSDYLLDTWYVHD+ R+G V+C D + L + NVF
Sbjct: 10 VDYEVNETHLTGAQALSDYLLDTWYVHDMPRYGAVSCIDRNVTALLRFADEWRGTNVNVF 189
Query: 117 FVNTSSRHQAAISLATYYDLLAKKS-GVEGVYVKHSATLMHKPEPLSGLTF 166
N+SS HQA +SLATYYDL K G + ++++ A L ++P S L F
Sbjct: 190 LYNSSSHHQAGLSLATYYDLFIKSFLGRDSAFMRYEAELFNEPASQSQLGF 342
>ref|XM_001463887.1| Leishmania infantum JPCM5 ABC transporter, putative (LinJ11.1250)
partial mRNA
Length = 5355
Score = 93.6 bits (231), Expect = 2e-17, Method: Composition-based stats.
Identities = 49/140 (35%), Positives = 76/140 (54%)
Frame = +1
Query: 1 RKMQCFQIVCPVVCILIAMLLSLVQYRDPQSLTYDYAMFAGKANPVVLTAGCDALWGSEP 60
RKMQ FQ+VCPV+CILIAMLLSL+ P ++T + ++ G+ +V GCD L G
Sbjct: 3025 RKMQFFQVVCPVICILIAMLLSLISLNGPDTITLNKEIYPGEV--LVEMNGCDELLGPNA 3198
Query: 61 RPVGYEVNETHFSTSGMLSDYLLDTWYVHDVSRFGGVACNDPEMRGNLSSYVQNVFFVNT 120
+ V + + LS Y++DT+ R G+ C DP+ + + + +N+
Sbjct: 3199 SFDNFTVRHQKYMNALNLSTYMVDTFLSQPTLRVEGLVCRDPDWANAVKTPNNVIHILNS 3378
Query: 121 SSRHQAAISLATYYDLLAKK 140
S+ HQ IS+ + Y L +K
Sbjct: 3379 STYHQGPISVNSIYQALYRK 3438
>ref|XM_001681541.1| Leishmania major ABC transporter, putative (LmjF11.1270) mRNA,
complete cds
Length = 5385
Score = 92.8 bits (229), Expect = 3e-17, Method: Composition-based stats.
Identities = 49/140 (35%), Positives = 77/140 (55%)
Frame = +1
Query: 1 RKMQCFQIVCPVVCILIAMLLSLVQYRDPQSLTYDYAMFAGKANPVVLTAGCDALWGSEP 60
RKMQ FQ+VCPV+CILIAMLLSL+ P ++T + ++ G+ +V GCD L G
Sbjct: 3025 RKMQFFQVVCPVICILIAMLLSLISLNGPDTITLNKDIYPGEV--LVEMNGCDELLGPNA 3198
Query: 61 RPVGYEVNETHFSTSGMLSDYLLDTWYVHDVSRFGGVACNDPEMRGNLSSYVQNVFFVNT 120
+ V + + LS Y++DT+ R G+ C+DP+ + + + +N+
Sbjct: 3199 SFDKFTVRHQKYMNALNLSTYMVDTFLSQPTLRVEGLVCHDPDWANAVKAPNNVIHILNS 3378
Query: 121 SSRHQAAISLATYYDLLAKK 140
S+ HQ IS+ + Y L +K
Sbjct: 3379 STYHQGPISVNSIYQALYRK 3438
>ref|XM_001562985.1| Leishmania braziliensis MHOM/BR/75/M2904 ABC transporter, putative
(LbrM11_V2.1020) partial mRNA
Length = 5295
Score = 82.0 bits (201), Expect = 6e-14, Method: Composition-based stats.
Identities = 55/156 (35%), Positives = 81/156 (51%), Gaps = 1/156 (0%)
Frame = +1
Query: 1 RKMQCFQIVCPVVCILIAMLLSLVQYRDPQSLTYDYAMFAGKANPVVLTAGCDALWGSEP 60
RKMQ FQIVCPV+C+L AMLLSL+ ++T + ++ G+ VV GC+ L G
Sbjct: 3025 RKMQFFQIVCPVICVLTAMLLSLISLSGLDAITLNKEIYPGEV--VVEMNGCEELLGPNA 3198
Query: 61 RPVGYEVNETHFSTSGMLSDYLLDTWYVHDVSRFGGVACNDPEMRGNLSSYVQNVFFV-N 119
+ V H+ + +S Y++DT+ R G+ C DP+ N+ NV + N
Sbjct: 3199 SFDNFTVRHQHYMNARNVSVYMVDTFLSQPTLRVEGLVCRDPDW-ANVVKVQNNVIHILN 3375
Query: 120 TSSRHQAAISLATYYDLLAKKSGVEGVYVKHSATLM 155
+S+ HQ IS+ + Y L KK +G K A M
Sbjct: 3376 SSTYHQGPISVNSVYQALYKKYTGKGARFKLVAGTM 3483
>ref|XM_001562987.1| Leishmania braziliensis MHOM/BR/75/M2904 ABC transporter, putative
(LbrM11_V2.1040) partial mRNA
Length = 5541
Score = 74.7 bits (182), Expect = 8e-12, Method: Composition-based stats.
Identities = 42/137 (30%), Positives = 73/137 (53%), Gaps = 3/137 (2%)
Frame = +1
Query: 1 RKMQCFQIVCPVVCILIAMLLSLVQYRDPQSLTYDYAMFAGKANPVVLTAGCDALWGSEP 60
R+MQCFQ++CPVVCIL+AM+L++V++ + + MF V +GC+A +G+
Sbjct: 3103 RRMQCFQVICPVVCILLAMVLTVVKFTETGFIDLSSEMFGETVQMQV--SGCEAYFGATH 3276
Query: 61 RPV--GYEVNETHFSTSGMLSDYLLDTWYVHDVSRFGGVACNDPEMRGNLSSYVQ-NVFF 117
G + + +F++ LS Y DT + R+ + C DP ++ + + + F
Sbjct: 3277 NVTRQGSYITDLNFASGADLSFYATDTALQLAMPRYTSLFCGDPGLQDTVPFELDAAILF 3456
Query: 118 VNTSSRHQAAISLATYY 134
NTS+ H + + L Y
Sbjct: 3457 YNTSAYHASGLVLQQLY 3507
>ref|XM_001681937.1| Leishmania major ABC1 transporter-like protein (LmjF15.0760) partial
mRNA
Length = 8076
Score = 74.7 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 47/148 (31%), Positives = 76/148 (51%), Gaps = 15/148 (10%)
Frame = +1
Query: 2 KMQCFQIVCPVVCILIAMLLSLVQYRDPQSLTYDYAMFAGKANPVVLTAGCDALWG--SE 59
+M FQIVCP++CIL+AMLL LV+ + +L ++F + +GC G +
Sbjct: 4390 RMHFFQIVCPILCILLAMLLQLVEGGNEGTLYLSPSVF--DVESAMQVSGCTKYMGDVAH 4563
Query: 60 PRPVGYEVNETHFS-----TSGMLSDYLLDTWYVHDVSRFGGVACNDPEMRGNLSSYVQ- 113
G+ ++ FS +S +S+ LLDTW+ H +RF + C DP+++ L+ + Q
Sbjct: 4564 MHEYGHNFSKVSFSDPNFVSSTDMSNELLDTWFTHSRNRFMSLQCGDPDLQLYLTFFYQD 4743
Query: 114 -------NVFFVNTSSRHQAAISLATYY 134
N NTSSR+ I++ Y
Sbjct: 4744 VIGTRQVNTLLYNTSSRNSLPIAMHMMY 4827
>ref|XM_001681543.1| Leishmania major ABC transporter, putative (LmjF11.1290) mRNA,
complete cds
Length = 5655
Score = 73.6 bits (179), Expect = 2e-11, Method: Composition-based stats.
Identities = 45/137 (32%), Positives = 68/137 (49%), Gaps = 3/137 (2%)
Frame = +1
Query: 1 RKMQCFQIVCPVVCILIAMLLSLVQYRDPQSLTYDYAMFAGKANPVVLTAGCDALWGSEP 60
RKMQCFQ++CPVVC+L+AMLL+L + + SL MF V +GC+ +G+
Sbjct: 2827 RKMQCFQVICPVVCVLVAMLLTLFSFTETGSLRLSSEMFGETVQMQV--SGCEKYFGATN 3000
Query: 61 RPV--GYEVNETHFSTSGMLSDYLLDTWYVHDVSRFGGVACNDPEMRGNLSSYVQNVF-F 117
G + + +F+ LS Y DT + R+ + C DP ++ + F F
Sbjct: 3001 NVTRQGSYITDLNFANGQDLSFYATDTAKQLTMPRYTSLFCGDPGLQYVVPFEFDATFLF 3180
Query: 118 VNTSSRHQAAISLATYY 134
NTS+ H + L Y
Sbjct: 3181 YNTSAYHAGGLVLQQLY 3231
>emb|AM502233.1| Leishmania infantum chromosome 15
Length = 577289
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 46/148 (31%), Positives = 72/148 (48%), Gaps = 15/148 (10%)
Frame = -2
Query: 2 KMQCFQIVCPVVCILIAMLLSLVQYRDPQSLTYDYAMFAGKANPVVLTAGCDALWGSEPR 61
+M FQIVCP++CI +AM L LV+ +L ++F + +GC G R
Sbjct: 320497 RMHFFQIVCPILCIFLAMSLQLVEGGTEGTLYLSPSVF--DVESAMQVSGCTNYMGDVAR 320324
Query: 62 PVGYEVN-------ETHFSTSGMLSDYLLDTWYVHDVSRFGGVACNDPEMRGNLSSYVQN 114
Y N + +F +S +S LLDTW+ H +RF + C DP+++ L+ + Q+
Sbjct: 320323 MHEYGHNFSKVSFSDPNFVSSTDMSSELLDTWFTHSRNRFMSLQCGDPDVQLYLTFFYQD 320144
Query: 115 V--------FFVNTSSRHQAAISLATYY 134
V NTSSR+ I++ Y
Sbjct: 320143 VIGTRQVSTLLYNTSSRNSLPIAMHMMY 320060
>ref|XM_823593.1| Trypanosoma brucei TREU927 ABC transporter (Tb11.02.3950) partial
mRNA
Length = 5217
Score = 66.6 bits (161), Expect = 2e-09, Method: Composition-based stats.
Identities = 45/152 (29%), Positives = 74/152 (48%), Gaps = 7/152 (4%)
Frame = +1
Query: 1 RKMQCFQIVCPVVCILIAMLL-SLVQYRDPQSLTYDYAMFAGKANPVVLTAGCDALWGSE 59
R+M Q+VC +L +L+ S P LT+D ++ K +V +A C WG
Sbjct: 2986 RRMHMLQVVCLTSVLLATVLIGSNPAQVGPLPLTFD--LYDEKV--IVDSANCGLFWGKS 3153
Query: 60 PRPVGYEVNETHFSTSGMLSDYLLDTWYVHDVSRFGGVACND-----PEMRGNLSSYVQN 114
P ++E + LS Y + TW+ H+ R+ + C D P++RG +
Sbjct: 3154 PGVPNVHISEISAKDTRELSIYGMKTWFAHEYPRYAAIFCGDRMLYNPKLRG-----MPV 3318
Query: 115 VFFVNTSSRHQAAISLATYYDL-LAKKSGVEG 145
V N+S+ HQ AI+++ +Y L L + SGV+
Sbjct: 3319 VMLYNSSALHQVAITMSMFYQLVLQRVSGVQA 3414
>ref|XM_001562979.1| Leishmania braziliensis MHOM/BR/75/M2904 ABC transporter, putative
(LbrM11_V2.0960) partial mRNA
Length = 5319
Score = 65.5 bits (158), Expect = 6e-09, Method: Composition-based stats.
Identities = 41/138 (29%), Positives = 71/138 (51%), Gaps = 3/138 (2%)
Frame = +1
Query: 1 RKMQCFQIVCPVVCILIAMLLSLVQYRDPQSLTYDYAMFAGKANPVVLTAGCDALWGSEP 60
R+ Q FQ+VCPV+C+L+AMLL L++ ++T ++ + + AGC + +
Sbjct: 3037 RRTQFFQVVCPVLCVLLAMLLMLIKLFQSPAITLSSDLYGTQVE--IDVAGCASAM-NLT 3207
Query: 61 RPVG---YEVNETHFSTSGMLSDYLLDTWYVHDVSRFGGVACNDPEMRGNLSSYVQNVFF 117
P G V ++ LS Y+L+T+ H++ R+ G+ACND + V +
Sbjct: 3208 IPFGSMTTTVQPPGVNSISSLSAYMLETYNTHEMERYSGLACNDTTSFPAPGTAASGVIY 3387
Query: 118 VNTSSRHQAAISLATYYD 135
N+S+ H + I L Y+
Sbjct: 3388 -NSSALHSSGIGLFNLYN 3438
>ref|XM_001462682.1| Leishmania infantum JPCM5 ABC1 transporter, putative (LinJ02.0220)
partial mRNA
Length = 7995
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 49/161 (30%), Positives = 77/161 (47%), Gaps = 9/161 (5%)
Frame = +1
Query: 1 RKMQCFQIVCPVVCILIAMLLSLVQYRDPQSLTYDYAMFAGKANPVVLTAGCDALWGSEP 60
RK CFQ++CP CIL+AMLL+L + L + + + + + T GC +
Sbjct: 5323 RKALCFQMICPAACILLAMLLNLAGTYTVRELRLNTSNYP--YDTLWDTTGCAGYFNGSF 5496
Query: 61 RPVGYEV---NETHFSTSGMLSD---YLLDTWYVH-DVSRFGGVACNDPEMRGNLSSYVQ 113
V + T + LSD +L D W+ H V ++ G+AC DP + L S
Sbjct: 5497 SDVAASLARNQRTRDLRTASLSDFYYFLQDEWFAHGKVGKYSGLACGDPVV-AMLPSIDL 5673
Query: 114 N--VFFVNTSSRHQAAISLATYYDLLAKKSGVEGVYVKHSA 152
N V N S+ H+ I++ +Y+LL K++ V + SA
Sbjct: 5674 NPVVLLTNYSAYHEFPIAMVNFYNLLLKEARGPSVSITASA 5796
>emb|AM502220.1| Leishmania infantum chromosome 2
Length = 327119
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 49/161 (30%), Positives = 77/161 (47%), Gaps = 9/161 (5%)
Frame = -2
Query: 1 RKMQCFQIVCPVVCILIAMLLSLVQYRDPQSLTYDYAMFAGKANPVVLTAGCDALWGSEP 60
RK CFQ++CP CIL+AMLL+L + L + + + + + T GC +
Sbjct: 104737 RKALCFQMICPAACILLAMLLNLAGTYTVRELRLNTSNYP--YDTLWDTTGCAGYFNGSF 104564
Query: 61 RPVGYEV---NETHFSTSGMLSD---YLLDTWYVH-DVSRFGGVACNDPEMRGNLSSYVQ 113
V + T + LSD +L D W+ H V ++ G+AC DP + L S
Sbjct: 104563 SDVAASLARNQRTRDLRTASLSDFYYFLQDEWFAHGKVGKYSGLACGDPVV-AMLPSIDL 104387
Query: 114 N--VFFVNTSSRHQAAISLATYYDLLAKKSGVEGVYVKHSA 152
N V N S+ H+ I++ +Y+LL K++ V + SA
Sbjct: 104386 NPVVLLTNYSAYHEFPIAMVNFYNLLLKEARGPSVSITASA 104264
>ref|XM_001563480.1| Leishmania braziliensis MHOM/BR/75/M2904 ABC1 transporter-like
protein (LbrM15_V2.0820) partial mRNA
Length = 7521
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 46/144 (31%), Positives = 68/144 (47%), Gaps = 15/144 (10%)
Frame = +1
Query: 2 KMQCFQIVCPVVCILIAMLLSLVQYRDPQSLTYDYAMFAGKANPVVLTAGCDALWG--SE 59
+MQ FQIVCPV C L+AM L LV+ + +L + F ++ + +GC G +
Sbjct: 3838 RMQFFQIVCPVFCTLLAMSLQLVKGGNGGTLHLSPSAFGVQS--AMQVSGCTNYMGDVAH 4011
Query: 60 PRPVGYEVNETHFS-----TSGMLSDYLLDTWYVHDVSRFGGVACNDPEMRGNLSSYVQ- 113
G+ +E FS S +S LLDTW H +RF + C DP + L+ +
Sbjct: 4012 MHTYGHNFSEVSFSDPNFVNSTDMSKELLDTWLTHSRNRFMSLQCGDPYIELYLTLFYPH 4191
Query: 114 -------NVFFVNTSSRHQAAISL 130
N NTSSR+ I++
Sbjct: 4192 VIGARQVNTLLYNTSSRNSLPIAM 4263
>emb|AM494952.1| Leishmania braziliensis chromosome 15
Length = 606948
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 46/144 (31%), Positives = 68/144 (47%), Gaps = 15/144 (10%)
Frame = -1
Query: 2 KMQCFQIVCPVVCILIAMLLSLVQYRDPQSLTYDYAMFAGKANPVVLTAGCDALWG--SE 59
+MQ FQIVCPV C L+AM L LV+ + +L + F ++ + +GC G +
Sbjct: 342201 RMQFFQIVCPVFCTLLAMSLQLVKGGNGGTLHLSPSAFGVQS--AMQVSGCTNYMGDVAH 342028
Query: 60 PRPVGYEVNETHFS-----TSGMLSDYLLDTWYVHDVSRFGGVACNDPEMRGNLSSYVQ- 113
G+ +E FS S +S LLDTW H +RF + C DP + L+ +
Sbjct: 342027 MHTYGHNFSEVSFSDPNFVNSTDMSKELLDTWLTHSRNRFMSLQCGDPYIELYLTLFYPH 341848
Query: 114 -------NVFFVNTSSRHQAAISL 130
N NTSSR+ I++
Sbjct: 341847 VIGARQVNTLLYNTSSRNSLPIAM 341776
>ref|XM_804764.1| Trypanosoma cruzi strain CL Brener ABC transporter partial mRNA
Length = 5187
Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 42/157 (26%), Positives = 74/157 (47%), Gaps = 7/157 (4%)
Frame = +1
Query: 6 FQIVCPVVCILIAMLLSLVQYRDPQS--LTYDYAMFAGKANPVVLTAGCDALWGSEPRPV 63
FQI+CP C+L+AM+L + Y P S LT F ++ V GC A + + +
Sbjct: 2974 FQIICPAACVLLAMVLDSIHYNQPVSVELTPSVYPFDTMSDAV----GCSAYFTASTYAL 3141
Query: 64 GYEVNETHFSTSGMLSD-----YLLDTWYVHDVSRFGGVACNDPEMRGNLSSYVQNVFFV 118
++ H + ML+ Y +D + H ++ +C DP L + +F+
Sbjct: 3142 PGSAHQVHITDRNMLNSMNLSWYHVDNYLRHPLAHLSSFSCADPNYVAMLGTNPIMIFY- 3318
Query: 119 NTSSRHQAAISLATYYDLLAKKSGVEGVYVKHSATLM 155
NTS+ H+ A +L+T Y L+ + G ++ S + +
Sbjct: 3319 NTSAPHEVATALSTLYSLILQSVVGTGAILRTSMSYL 3429
>ref|XM_801794.1| Trypanosoma cruzi strain CL Brener ABC transporter partial mRNA
Length = 5187
Score = 62.0 bits (149), Expect = 6e-08, Method: Composition-based stats.
Identities = 42/157 (26%), Positives = 74/157 (47%), Gaps = 7/157 (4%)
Frame = +1
Query: 6 FQIVCPVVCILIAMLLSLVQYRDPQS--LTYDYAMFAGKANPVVLTAGCDALWGSEPRPV 63
FQI+CP CIL+A++L + Y P S LT F ++ V GC A + + +
Sbjct: 2974 FQIICPAACILLAVVLDSIHYNQPVSVELTPSVYPFDTMSDAV----GCSAYFTASTYAL 3141
Query: 64 GYEVNETHFSTSGMLSD-----YLLDTWYVHDVSRFGGVACNDPEMRGNLSSYVQNVFFV 118
++ H + ML+ Y +D + H ++ +C DP L + +F+
Sbjct: 3142 PGSTHQVHITDRNMLNSMNLSWYHVDNYLRHPLAHLSSFSCADPNYAAILGTNPIMIFY- 3318
Query: 119 NTSSRHQAAISLATYYDLLAKKSGVEGVYVKHSATLM 155
NTS+ H+ A +L+T Y L+ + G ++ S + +
Sbjct: 3319 NTSAPHEVATALSTLYSLILQSVVGAGAILRTSMSYL 3429
>gb|CP000078.1| Leishmania major strain Friedlin chromosome 2, complete sequence
Length = 355714
Score = 61.6 bits (148), Expect = 8e-08, Method: Composition-based stats.
Identities = 48/161 (29%), Positives = 77/161 (47%), Gaps = 9/161 (5%)
Frame = -3
Query: 1 RKMQCFQIVCPVVCILIAMLLSLVQYRDPQSLTYDYAMFAGKANPVVLTAGCDALWGSEP 60
RK CFQ+VCP CIL+AMLL++ + L + + + + + T GC +
Sbjct: 141092 RKALCFQMVCPAACILLAMLLNVAGTYTVRELRLNTSNYP--YDTLWDTTGCAGYFNGSF 140919
Query: 61 RPVGYEVNETHFSTS---GMLSD---YLLDTWYVH-DVSRFGGVACNDPEMRGNLSSYVQ 113
V + + LSD +L D W+ H V ++ G+AC DP + L S
Sbjct: 140918 SDVAASLARNQRTRDLRMTSLSDFYYFLQDEWFAHGKVGKYSGLACGDPVV-AMLPSIDL 140742
Query: 114 N--VFFVNTSSRHQAAISLATYYDLLAKKSGVEGVYVKHSA 152
N V N S+ H+ I+++ +Y+LL K++ V + SA
Sbjct: 140741 NPVVLLTNYSAYHEFPIAMSNFYNLLLKEARGPSVSITASA 140619
>ref|XM_817136.1| Leishmania major ABC1 transporter, putative (LmjF02.0300) mRNA,
complete cds
Length = 7173
Score = 61.6 bits (148), Expect = 8e-08, Method: Composition-based stats.
Identities = 48/161 (29%), Positives = 77/161 (47%), Gaps = 9/161 (5%)
Frame = +1
Query: 1 RKMQCFQIVCPVVCILIAMLLSLVQYRDPQSLTYDYAMFAGKANPVVLTAGCDALWGSEP 60
RK CFQ+VCP CIL+AMLL++ + L + + + + + T GC +
Sbjct: 4570 RKALCFQMVCPAACILLAMLLNVAGTYTVRELRLNTSNYP--YDTLWDTTGCAGYFNGSF 4743
Query: 61 RPVGYEVNETHFSTS---GMLSD---YLLDTWYVH-DVSRFGGVACNDPEMRGNLSSYVQ 113
V + + LSD +L D W+ H V ++ G+AC DP + L S
Sbjct: 4744 SDVAASLARNQRTRDLRMTSLSDFYYFLQDEWFAHGKVGKYSGLACGDPVV-AMLPSIDL 4920
Query: 114 N--VFFVNTSSRHQAAISLATYYDLLAKKSGVEGVYVKHSA 152
N V N S+ H+ I+++ +Y+LL K++ V + SA
Sbjct: 4921 NPVVLLTNYSAYHEFPIAMSNFYNLLLKEARGPSVSITASA 5043
>ref|XM_001681539.1| Leishmania major ABC transporter, putative (LmjF11.1250) mRNA,
complete cds
Length = 5331
Score = 55.8 bits (133), Expect = 5e-06, Method: Composition-based stats.
Identities = 44/141 (31%), Positives = 66/141 (46%), Gaps = 6/141 (4%)
Frame = +1
Query: 1 RKMQCFQIVCPVVCILIAMLLSLVQYRDPQSLTYDYAMFAGKANPVVLTAGCD-ALWGSE 59
R+ Q FQIVCP++C+L+AMLL L++ ++T ++ + GC+ A+ S
Sbjct: 3037 RRTQFFQIVCPMLCVLLAMLLMLIKLFLSPAITLSSDLYGTAVE--IDVVGCERAMNLSI 3210
Query: 60 P-RPVGYEVNETHFSTSGMLSDYLLDTWYVHDVSRFGGVACND----PEMRGNLSSYVQN 114
P V + LS Y+L T+ H R+ G+ C D P S V
Sbjct: 3211 PFSSRAVTVQPPSAISIATLSSYMLKTYDTHVAERYTGLVCLDTVSFPAPFAPASRPVSA 3390
Query: 115 VFFVNTSSRHQAAISLATYYD 135
V + NTS H +AI L Y+
Sbjct: 3391 VIY-NTSGLHSSAIGLYNLYN 3450
>ref|XM_001681536.1| Leishmania major ABC transporter, putative (LmjF11.1220) mRNA,
complete cds
Length = 5331
Score = 55.8 bits (133), Expect = 5e-06, Method: Composition-based stats.
Identities = 44/141 (31%), Positives = 66/141 (46%), Gaps = 6/141 (4%)
Frame = +1
Query: 1 RKMQCFQIVCPVVCILIAMLLSLVQYRDPQSLTYDYAMFAGKANPVVLTAGCD-ALWGSE 59
R+ Q FQIVCP++C+L+AMLL L++ ++T ++ + GC+ A+ S
Sbjct: 3037 RRTQFFQIVCPMLCVLLAMLLMLIKLFLSPAITLSSDLYGTAVE--IDVVGCERAMNLSI 3210
Query: 60 P-RPVGYEVNETHFSTSGMLSDYLLDTWYVHDVSRFGGVACND----PEMRGNLSSYVQN 114
P V + LS Y+L T+ H R+ G+ C D P S V
Sbjct: 3211 PFSSRAVTVQPPSAISIATLSSYMLKTYDTHVAERYTGLVCLDTVSFPAPFAPASRPVSA 3390
Query: 115 VFFVNTSSRHQAAISLATYYD 135
V + NTS H +AI L Y+
Sbjct: 3391 VIY-NTSGLHSSAIGLYNLYN 3450
>ref|XM_001466294.1| Leishmania infantum JPCM5 ABC transporter (LinJ27.0550) mRNA,
complete cds
Length = 5532
Score = 55.1 bits (131), Expect = 8e-06, Method: Composition-based stats.
Identities = 42/136 (30%), Positives = 66/136 (48%), Gaps = 2/136 (1%)
Frame = +1
Query: 1 RKMQCFQIVCPVVCILIAMLLSLVQYRDPQSLTYDYAMFAGKANPVVLTAGCDALWG-SE 59
R+ Q FQIVCPV C+L+AMLL+LV+ ++ ++ G A + L A C+ + +
Sbjct: 3250 RRTQFFQIVCPVACVLLAMLLTLVRLFSTPTIVLSSDVY-GTAVDIPL-ANCEGVLDVTT 3423
Query: 60 PRPVGYEVN-ETHFSTSGMLSDYLLDTWYVHDVSRFGGVACNDPEMRGNLSSYVQNVFFV 118
P ++ T + S L T+ H R+GGV+C S + + F
Sbjct: 3424 PFSTKAHMDIWTDVPDASAFSTKLNRTYQTHAKERYGGVSCAAAG-----SGELYHSVFY 3588
Query: 119 NTSSRHQAAISLATYY 134
NTS+ H+ AI A +
Sbjct: 3589 NTSALHEVAIETANVF 3636
>emb|AM502245.1| Leishmania infantum chromosome 27
Length = 959754
Score = 55.1 bits (131), Expect = 8e-06, Method: Composition-based stats.
Identities = 42/136 (30%), Positives = 66/136 (48%), Gaps = 2/136 (1%)
Frame = -2
Query: 1 RKMQCFQIVCPVVCILIAMLLSLVQYRDPQSLTYDYAMFAGKANPVVLTAGCDALWG-SE 59
R+ Q FQIVCPV C+L+AMLL+LV+ ++ ++ G A + L A C+ + +
Sbjct: 245432 RRTQFFQIVCPVACVLLAMLLTLVRLFSTPTIVLSSDVY-GTAVDIPL-ANCEGVLDVTT 245259
Query: 60 PRPVGYEVN-ETHFSTSGMLSDYLLDTWYVHDVSRFGGVACNDPEMRGNLSSYVQNVFFV 118
P ++ T + S L T+ H R+GGV+C S + + F
Sbjct: 245258 PFSTKAHMDIWTDVPDASAFSTKLNRTYQTHAKERYGGVSCAAAG-----SGELYHSVFY 245094
Query: 119 NTSSRHQAAISLATYY 134
NTS+ H+ AI A +
Sbjct: 245093 NTSALHEVAIETANVF 245046
>gb|AF200948.1| Leishmania tropica ABC1 transporter (abc1) gene, complete cds
Length = 9063
Score = 55.1 bits (131), Expect = 8e-06, Method: Composition-based stats.
Identities = 42/136 (30%), Positives = 66/136 (48%), Gaps = 2/136 (1%)
Frame = +2
Query: 1 RKMQCFQIVCPVVCILIAMLLSLVQYRDPQSLTYDYAMFAGKANPVVLTAGCDALWG-SE 59
R+ Q FQIVCPV C+L+AMLL+LV+ ++ ++ G A + L A C+ + +
Sbjct: 5423 RRTQFFQIVCPVACVLLAMLLTLVRLFSTPTIVLSSDVY-GTAVDIPL-ANCEGVLDVTT 5596
Query: 60 PRPVGYEVN-ETHFSTSGMLSDYLLDTWYVHDVSRFGGVACNDPEMRGNLSSYVQNVFFV 118
P ++ T + S L T+ H R+GGV+C S + + F
Sbjct: 5597 PFSTKAHMDIWTDVPDASAFSTKLNRTYQTHAKERYGGVSCAAAG-----SGELYHSVFY 5761
Query: 119 NTSSRHQAAISLATYY 134
NTS+ H+ AI A +
Sbjct: 5762 NTSALHEVAIETANVF 5809
>gb|CP000079.1| Leishmania major strain Friedlin chromosome 27, complete sequence
Length = 1130447
Score = 54.3 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 42/136 (30%), Positives = 66/136 (48%), Gaps = 2/136 (1%)
Frame = -2
Query: 1 RKMQCFQIVCPVVCILIAMLLSLVQYRDPQSLTYDYAMFAGKANPVVLTAGCDALWG-SE 59
R+ Q FQIVCPV C+L+AMLL+LV+ ++ ++ G A + L A C+ + +
Sbjct: 412813 RRTQFFQIVCPVACVLLAMLLTLVRLFSTPTMVLSSDVY-GTAVDIPL-ANCEGVLDVTT 412640
Query: 60 PRPVGYEVN-ETHFSTSGMLSDYLLDTWYVHDVSRFGGVACNDPEMRGNLSSYVQNVFFV 118
P ++ T + S L T+ H R+GGV+C S + + F
Sbjct: 412639 PFSTKAHMDIWTDAPDASAFSTKLNRTYQTHARERYGGVSCAAAG-----SGQLYHSVFY 412475
Query: 119 NTSSRHQAAISLATYY 134
NTS+ H+ AI A +
Sbjct: 412474 NTSALHEVAIETANVF 412427
Score = 54.3 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 42/136 (30%), Positives = 66/136 (48%), Gaps = 2/136 (1%)
Frame = -2
Query: 1 RKMQCFQIVCPVVCILIAMLLSLVQYRDPQSLTYDYAMFAGKANPVVLTAGCDALWG-SE 59
R+ Q FQIVCPV C+L+AMLL+LV+ ++ ++ G A + L A C+ + +
Sbjct: 423841 RRTQFFQIVCPVACVLLAMLLTLVRLFSTPTMVLSSDVY-GTAVDIPL-ANCEGVLDVTT 423668
Query: 60 PRPVGYEVN-ETHFSTSGMLSDYLLDTWYVHDVSRFGGVACNDPEMRGNLSSYVQNVFFV 118
P ++ T + S L T+ H R+GGV+C S + + F
Sbjct: 423667 PFSTKAHMDIWTDAPDASAFSTKLNRTYQTHARERYGGVSCAAAG-----SGQLYHSVFY 423503
Query: 119 NTSSRHQAAISLATYY 134
NTS+ H+ AI A +
Sbjct: 423502 NTSALHEVAIETANVF 423455
>ref|XM_842958.1| Leishmania major strain Friedlin ABC transporter, putative
(LmjF27.0970) partial mRNA
Length = 5535
Score = 54.3 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 42/136 (30%), Positives = 66/136 (48%), Gaps = 2/136 (1%)
Frame = +1
Query: 1 RKMQCFQIVCPVVCILIAMLLSLVQYRDPQSLTYDYAMFAGKANPVVLTAGCDALWG-SE 59
R+ Q FQIVCPV C+L+AMLL+LV+ ++ ++ G A + L A C+ + +
Sbjct: 3253 RRTQFFQIVCPVACVLLAMLLTLVRLFSTPTMVLSSDVY-GTAVDIPL-ANCEGVLDVTT 3426
Query: 60 PRPVGYEVN-ETHFSTSGMLSDYLLDTWYVHDVSRFGGVACNDPEMRGNLSSYVQNVFFV 118
P ++ T + S L T+ H R+GGV+C S + + F
Sbjct: 3427 PFSTKAHMDIWTDAPDASAFSTKLNRTYQTHARERYGGVSCAAAG-----SGQLYHSVFY 3591
Query: 119 NTSSRHQAAISLATYY 134
NTS+ H+ AI A +
Sbjct: 3592 NTSALHEVAIETANVF 3639
>ref|XM_842959.1| Leishmania major strain Friedlin ABC transporter, putative
(LmjF27.0980) partial mRNA
Length = 5643
Score = 54.3 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 42/136 (30%), Positives = 66/136 (48%), Gaps = 2/136 (1%)
Frame = +1
Query: 1 RKMQCFQIVCPVVCILIAMLLSLVQYRDPQSLTYDYAMFAGKANPVVLTAGCDALWG-SE 59
R+ Q FQIVCPV C+L+AMLL+LV+ ++ ++ G A + L A C+ + +
Sbjct: 3379 RRTQFFQIVCPVACVLLAMLLTLVRLFSTPTMVLSSDVY-GTAVDIPL-ANCEGVLDVTT 3552
Query: 60 PRPVGYEVN-ETHFSTSGMLSDYLLDTWYVHDVSRFGGVACNDPEMRGNLSSYVQNVFFV 118
P ++ T + S L T+ H R+GGV+C S + + F
Sbjct: 3553 PFSTKAHMDIWTDAPDASAFSTKLNRTYQTHARERYGGVSCAAAG-----SGQLYHSVFY 3717
Query: 119 NTSSRHQAAISLATYY 134
NTS+ H+ AI A +
Sbjct: 3718 NTSALHEVAIETANVF 3765
>ref|XM_001463886.1| Leishmania infantum JPCM5 ABC transporter, putative (LinJ11.1230)
partial mRNA
Length = 5694
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 39/140 (27%), Positives = 66/140 (47%), Gaps = 5/140 (3%)
Frame = +1
Query: 1 RKMQCFQIVCPVVCILIAMLLSLVQYRDPQSLTYDYAMFAGKANPVVLTAGCD-ALWGSE 59
R+ Q FQI CP++C+L+AMLL+L++ ++T ++ + GC+ A+ S
Sbjct: 3400 RRTQFFQIACPMLCVLLAMLLTLIKLFQYPAITLSSDLYGTVVE--IDVVGCESAMNLSI 3573
Query: 60 P-RPVGYEVNETHFSTSGMLSDYLLDTWYVHDVSRFGGVACNDP---EMRGNLSSYVQNV 115
P V ++ LS Y+L+T+ H R+ G+ C D + S + +
Sbjct: 3574 PFSSKAVTVQPPSATSVATLSSYMLETYDTHLAERYTGLVCADTIAVPVPITPSDWNVSA 3753
Query: 116 FFVNTSSRHQAAISLATYYD 135
NTS H + I L Y+
Sbjct: 3754 VIYNTSGLHSSPIGLYNLYN 3813
>ref|XM_001463883.1| Leishmania infantum JPCM5 ABC transporter, putative (LinJ11.1200)
partial mRNA
Length = 5331
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 42/145 (28%), Positives = 67/145 (46%), Gaps = 11/145 (7%)
Frame = +1
Query: 2 KMQCFQIVCPVVCILIAMLLSLVQYRDPQSLTYDYAMFAGKANPVVLTAGCD-ALWGSEP 60
+ Q FQI CP++C+L+AMLL+L++ ++T ++ + GC+ A+ S P
Sbjct: 3040 RTQFFQIACPMLCVLLAMLLTLIKLFQYPAITLSSDLYGTVVE--IDVVGCESAMNLSIP 3213
Query: 61 -RPVGYEVNETHFSTSGMLSDYLLDTWYVHDVSRFGGVACND---------PEMRGNLSS 110
V ++ LS Y+L+T+ H R+ G+ C D PE R
Sbjct: 3214 FSSKAVTVQPPSATSIATLSSYMLETYNTHKAERYTGLVCVDAVTFPLPFTPENRS---- 3381
Query: 111 YVQNVFFVNTSSRHQAAISLATYYD 135
V V + NTS H + I L Y+
Sbjct: 3382 -VSAVIY-NTSGLHSSPIGLYNLYN 3450
>gb|AF335476.1| Leishmania tropica ABCA1.2 transporter gene, partial cds
Length = 5688
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 42/145 (28%), Positives = 67/145 (46%), Gaps = 11/145 (7%)
Frame = +1
Query: 2 KMQCFQIVCPVVCILIAMLLSLVQYRDPQSLTYDYAMFAGKANPVVLTAGCD-ALWGSEP 60
+ Q FQI CP++C+L+AMLL+L++ ++T ++ + GC+ A+ S P
Sbjct: 3400 RTQFFQIACPMLCVLLAMLLTLIKLFQYPAITLSSDLYGTVVE--IDVVGCESAMNLSIP 3573
Query: 61 -RPVGYEVNETHFSTSGMLSDYLLDTWYVHDVSRFGGVACND---------PEMRGNLSS 110
V ++ LS Y+L+T+ H R+ G+ C D PE R
Sbjct: 3574 FSSKAVTVQPPSATSIATLSSYMLETYNTHKAERYTGLVCVDAVTFPLPFTPENRS---- 3741
Query: 111 YVQNVFFVNTSSRHQAAISLATYYD 135
V V + NTS H + I L Y+
Sbjct: 3742 -VSAVIY-NTSGLHSSPIGLYNLYN 3810
>ref|XM_001565814.1| Leishmania braziliensis MHOM/BR/75/M2904 ABC transporter, putative
(LbrM27_V2.1050) partial mRNA
Length = 5640
Score = 53.1 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 40/136 (29%), Positives = 65/136 (47%), Gaps = 2/136 (1%)
Frame = +1
Query: 1 RKMQCFQIVCPVVCILIAMLLSLVQYRDPQSLTYDYAMFAGKANPVVLTAGCDALWG--S 58
R+ Q FQIVCPV C+L+AMLL+LV+ ++T ++ + + A C+ + +
Sbjct: 3358 RRTQFFQIVCPVACVLLAMLLTLVKLFRTSTITLSSDVYGAAVD--IPLANCEGVLDVVT 3531
Query: 59 EPRPVGYEVNETHFSTSGMLSDYLLDTWYVHDVSRFGGVACNDPEMRGNLSSYVQNVFFV 118
P + T ++ S L T+ H R+GGV+C G L V F
Sbjct: 3532 PFSPNAHMDIWTDTPSASAFSAKLNMTYNTHANERYGGVSCAVAS-GGELYHSV----FY 3696
Query: 119 NTSSRHQAAISLATYY 134
NT++ H+ AI + +
Sbjct: 3697 NTTALHEVAIETSNVF 3744
>emb|AM494964.1| Leishmania braziliensis chromosome 27
Length = 1217395
Score = 53.1 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 40/136 (29%), Positives = 65/136 (47%), Gaps = 2/136 (1%)
Frame = -3
Query: 1 RKMQCFQIVCPVVCILIAMLLSLVQYRDPQSLTYDYAMFAGKANPVVLTAGCDALWG--S 58
R+ Q FQIVCPV C+L+AMLL+LV+ ++T ++ + + A C+ + +
Sbjct: 412358 RRTQFFQIVCPVACVLLAMLLTLVKLFRTSTITLSSDVYGAAVD--IPLANCEGVLDVVT 412185
Query: 59 EPRPVGYEVNETHFSTSGMLSDYLLDTWYVHDVSRFGGVACNDPEMRGNLSSYVQNVFFV 118
P + T ++ S L T+ H R+GGV+C G L V F
Sbjct: 412184 PFSPNAHMDIWTDTPSASAFSAKLNMTYNTHANERYGGVSCAVAS-GGELYHSV----FY 412020
Query: 119 NTSSRHQAAISLATYY 134
NT++ H+ AI + +
Sbjct: 412019 NTTALHEVAIETSNVF 411972
>ref|XM_001463889.1| Leishmania infantum JPCM5 ABC transporter, putative (LinJ11.1270)
partial mRNA
Length = 5688
Score = 51.6 bits (122), Expect = 9e-05, Method: Composition-based stats.
Identities = 45/137 (32%), Positives = 69/137 (50%), Gaps = 3/137 (2%)
Frame = +1
Query: 1 RKMQCFQIVCPVVCILIAMLLSLVQYRDPQSLTYDYAMFAGKANPVVLTAGCDALWGSEP 60
RKMQCFQ+VCPVVC+++AMLL+L + + SL+ MF V +GC+ +G+
Sbjct: 2833 RKMQCFQVVCPVVCVMVAMLLTLFSFTEAGSLSLTSEMFGETVQMQV--SGCEKYFGATN 3006
Query: 61 RPV--GYEVNETHFSTSGMLSDYLLDTWYVHDVSRFGGVACNDPEMRGNLSSYVQNVF-F 117
G + + +F+ LS Y DT + R+ + C DP ++ + F F
Sbjct: 3007 NVTRQGSYITDLNFANGQDLSFYATDTAKQLTMPRYTSLFCGDPGLQHVVPFEFDATFLF 3186
Query: 118 VNTSSRHQAAISLATYY 134
NTS+ H + L Y
Sbjct: 3187 YNTSAYHAGGLVLQQLY 3237
>ref|XM_001561498.1| Leishmania braziliensis MHOM/BR/75/M2904 ABC1 transporter, putative
(LbrM02_V2.0350) partial mRNA
Length = 6861
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 51/176 (28%), Positives = 79/176 (44%), Gaps = 14/176 (7%)
Frame = +1
Query: 1 RKMQCFQIVCPVVCILIAMLLSLVQYRDPQSLTYDYAMFAGKANPVVLTAGCDALWGSE- 59
R+M CFQ++CPVVC+L+AMLLSL + LT + + + + + T GC + S
Sbjct: 4357 RRMLCFQVICPVVCVLLAMLLSLTRAYTVDELTMNTSNYP--YDTLWDTTGCADYFDSSS 4530
Query: 60 --------PRPVGYEVNETHFSTSGMLSDYLLDTWYVHDVSRFGGVACNDPEMRGNLSSY 111
P +V + + L+ V R+ D + +++
Sbjct: 4531 NATAASIAPNQRIRDVKAVNLRLLLLPPRRLVLARSNRKVQRYRVRRPCDGD-----AAF 4695
Query: 112 VQN--VFFVNTSSRHQAAISLATYYDLLAKKSGVEGVYV---KHSATLMHKPEPLS 162
+N V N S+ H+ IS+ +Y+LL K GV G V H ATL K P+S
Sbjct: 4696 HRNPVVLLTNYSTYHEFPISMVNFYNLLFK--GVRGPSVFITAHVATLPSKSAPVS 4857
>emb|AM494939.1| Leishmania braziliensis chromosome 2
Length = 332537
Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 34/88 (38%), Positives = 48/88 (54%), Gaps = 6/88 (6%)
Frame = -2
Query: 81 YLLDTWYVH-DVSRFGGVACNDPEMRGNLSSYVQN--VFFVNTSSRHQAAISLATYYDLL 137
+L D WY+H + ++ G+AC DP + L S +N V N S+ H+ IS+ +Y+LL
Sbjct: 150061 FLQDDWYLHGQIGKYSGIACGDP-VTAMLPSISRNPVVLLTNYSTYHEFPISMVNFYNLL 149885
Query: 138 AKKSGVEGVYV---KHSATLMHKPEPLS 162
K GV G V H ATL K P+S
Sbjct: 149884 FK--GVRGPSVFITAHVATLPSKSAPVS 149807
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 19/39 (48%), Positives = 28/39 (71%)
Frame = -1
Query: 1 RKMQCFQIVCPVVCILIAMLLSLVQYRDPQSLTYDYAMF 39
R+M CFQ++CPVVC+L+AMLLSL + LT + + +
Sbjct: 150311 RRMLCFQVICPVVCVLLAMLLSLTRAYTVDELTMNTSNY 150195
>ref|XM_001463884.1| Leishmania infantum JPCM5 ABC1 transporter, putative (LinJ11.1210)
partial mRNA
Length = 1977
Score = 48.5 bits (114), Expect = 7e-04, Method: Composition-based stats.
Identities = 29/81 (35%), Positives = 43/81 (53%), Gaps = 7/81 (8%)
Frame = +1
Query: 93 RFGGVACNDPEMRGNLSSYVQ------NVFFVNTSSRHQAAISLATYYDLLAKKS-GVEG 145
R+G V+C D + L + NVF N+SS HQA ++LATYYDL K G +
Sbjct: 7 RYGAVSCIDRNVTALLRFADEWRGTNVNVFLYNSSSHHQAGLNLATYYDLFIKSFLGRDS 186
Query: 146 VYVKHSATLMHKPEPLSGLTF 166
++++ L ++P S L F
Sbjct: 187 AFMRYKVELFNEPASQSQLGF 249
>ref|XM_812232.1| Trypanosoma cruzi strain CL Brener ABC transporter partial mRNA
Length = 5511
Score = 48.5 bits (114), Expect = 7e-04, Method: Composition-based stats.
Identities = 40/150 (26%), Positives = 65/150 (43%), Gaps = 3/150 (2%)
Frame = +1
Query: 1 RKMQCFQIVCPVVCILIAMLLSLVQYRDPQSLTYDYAMFAGKANPVVLTAGCDALWG-SE 59
R+ Q QIV PVV + +LL LV++ SL M+ + ++ A C+ S
Sbjct: 3268 RRTQFIQIVFPVVMLTFVLLLQLVEFFSYPSLLLSSNMYGERV--LIDLAACNGTINVSI 3441
Query: 60 PRPVGYEVNETHFSTSGMLSDYLLDTWYVHDVSRFGGVACNDPEMRGNLSSYVQNVFFVN 119
P + +G L YL++ ++R+ ++CND R + + N
Sbjct: 3442 PFAKSTSFGIHDIADTGDLYKYLIEQQKTPSLNRYTSISCNDVVYRE------RKILLYN 3603
Query: 120 TSSRHQAAISLATYYD--LLAKKSGVEGVY 147
S+ H +A+SL YY L A+ G Y
Sbjct: 3604 GSALHSSALSLVGYYGSVLYAQLRGASTAY 3693
>ref|NG_009370.1| Homo sapiens glypican 5 (GPC5) on chromosome 13
Length = 1475556
Score = 36.2 bits (82), Expect = 3.4, Method: Composition-based stats.
Identities = 27/67 (40%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Frame = +1
Query: 96 GVACNDPEMRGNLSSYVQNVFFVNTSSRHQAAISLATYYDLLAKKSGVEGVYVKHSATL- 154
G C + M+ ++ SY NVFF NTS R L +Y L KK VEGVY K
Sbjct: 386098 GKVCRESHMQDSVISYDNNVFFWNTSLR----TGLRWFYS*L-KKK*VEGVYSKIKVKCI 386262
Query: 155 ---MHKP 158
+HKP
Sbjct: 386263 V**IHKP 386283
>emb|AL596221.3| Human DNA sequence from clone RP11-67I22 on chromosome 13, complete
sequence
Length = 76569
Score = 36.2 bits (82), Expect = 3.4, Method: Composition-based stats.
Identities = 27/67 (40%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Frame = +3
Query: 96 GVACNDPEMRGNLSSYVQNVFFVNTSSRHQAAISLATYYDLLAKKSGVEGVYVKHSATL- 154
G C + M+ ++ SY NVFF NTS R L +Y L KK VEGVY K
Sbjct: 20175 GKVCRESHMQDSVISYDNNVFFWNTSLR----TGLRWFYS*L-KKK*VEGVYSKIKVKCI 20339
Query: 155 ---MHKP 158
+HKP
Sbjct: 20340 V**IHKP 20360
>gb|CP000750.2| Kineococcus radiotolerans SRS30216, complete genome
Length = 4761183
Score = 35.8 bits (81), Expect = 4.5, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 37/75 (49%), Gaps = 7/75 (9%)
Frame = +2
Query: 40 AGKANPVVLTAGCDALWGS---EPRPVGYEVNETHFSTSGMLSDYLLDTWYVH----DVS 92
AG A+ VV T G A WGS PVGY+V+ F T G+L DT+Y D
Sbjct: 2696264 AGYAHLVVDTRGQGAAWGSGGATADPVGYDVSTPGFMTRGILDK---DTYYYRRVFTDAV 2696434
Query: 93 RFGGVACNDPEMRGN 107
R A + PE+R +
Sbjct: 2696435 RAVRAARSLPEVRAD 2696479
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.322 0.135 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 581979144
Number of extensions: 8211501
Number of successful extensions: 40545
Number of sequences better than 10: 4
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 40517
Number of HSP's successfully gapped: 4
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 16 (7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 78 (34.7 bits)
Query= gi|154333587|ref|NC_009303.1|:subseq(474056,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 11
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
ref|XM_001562984.1| Leishmania braziliensis MHOM/BR/75/M2904 ABC... 162 3e-38
emb|AM494948.1| Leishmania braziliensis chromosome 11 162 3e-38
ref|XM_001562983.1| Leishmania braziliensis MHOM/BR/75/M2904 ABC... 75 6e-12
>ref|XM_001562984.1| Leishmania braziliensis MHOM/BR/75/M2904 ABC1 transporter, putative
(LbrM11_V2.1010) partial mRNA
Length = 5451
Score = 162 bits (411), Expect = 3e-38, Method: Composition-based stats.
Identities = 130/166 (78%), Positives = 130/166 (78%)
Frame = +2
Query: 1 ARCSASRLCAQSSAFUSQCCUVSCSTATLSRSPTTMQCSPVRQIPWYUQPAATRCXXXXX 60
ARCSASRLCAQSSAF SQCC VSCSTATLSRSPTTMQCSPVRQIPWY QPAATRC
Sbjct: 3245 ARCSASRLCAQSSAF*SQCC*VSCSTATLSRSPTTMQCSPVRQIPWY*QPAATRCGEASR 3424
Query: 61 XXXXXXXXXHIFRQVACSXXXXXXXXXXXXXXASVVXRVMIPRCVATCPRMFKTFSSUIR 120
HIFRQVACS ASVV RVMIPRCVATCPRMFKTFSS IR
Sbjct: 3425 ARSGMR*MRHIFRQVACSRTTCWTRGTCTTCRASVV*RVMIPRCVATCPRMFKTFSS*IR 3604
Query: 121 ARVIRLLSALPRTMTYLQRRVEWRGFTSSTAPLUCISRNRUAAUHS 166
ARVIRLLSALPRTMTYLQRRVEWRGFTSSTAPL CISRNR AA HS
Sbjct: 3605 ARVIRLLSALPRTMTYLQRRVEWRGFTSSTAPL*CISRNR*AA*HS 3742
>emb|AM494948.1| Leishmania braziliensis chromosome 11
Length = 558624
Score = 162 bits (411), Expect = 3e-38, Method: Composition-based stats.
Identities = 130/166 (78%), Positives = 130/166 (78%)
Frame = +2
Query: 1 ARCSASRLCAQSSAFUSQCCUVSCSTATLSRSPTTMQCSPVRQIPWYUQPAATRCXXXXX 60
ARCSASRLCAQSSAF SQCC VSCSTATLSRSPTTMQCSPVRQIPWY QPAATRC
Sbjct: 474059 ARCSASRLCAQSSAF*SQCC*VSCSTATLSRSPTTMQCSPVRQIPWY*QPAATRCGEASR 474238
Query: 61 XXXXXXXXXHIFRQVACSXXXXXXXXXXXXXXASVVXRVMIPRCVATCPRMFKTFSSUIR 120
HIFRQVACS ASVV RVMIPRCVATCPRMFKTFSS IR
Sbjct: 474239 ARSGMR*MRHIFRQVACSRTTCWTRGTCTTCRASVV*RVMIPRCVATCPRMFKTFSS*IR 474418
Query: 121 ARVIRLLSALPRTMTYLQRRVEWRGFTSSTAPLUCISRNRUAAUHS 166
ARVIRLLSALPRTMTYLQRRVEWRGFTSSTAPL CISRNR AA HS
Sbjct: 474419 ARVIRLLSALPRTMTYLQRRVEWRGFTSSTAPL*CISRNR*AA*HS 474556
Score = 75.1 bits (183), Expect = 6e-12, Method: Composition-based stats.
Identities = 77/161 (47%), Positives = 82/161 (50%), Gaps = 6/161 (3%)
Frame = +2
Query: 1 ARCSASRLCAQSSAFUSQCCUVSCSTATLSRSPTTMQCSPVRQIPWYUQPAATRCXXXXX 60
ARCSASRLCAQSSAF SQCC VSCSTATLSRSPTTMQCSPVRQIPWY QPAATRC
Sbjct: 461990 ARCSASRLCAQSSAF*SQCC*VSCSTATLSRSPTTMQCSPVRQIPWY*QPAATRCGEASR 462169
Query: 61 XXXXXXXXXHIFRQVACSXXXXXXXXXXXXXXASVVXRVMIPR------CVATCPRMFKT 114
C A+ + R I + + + T
Sbjct: 462170 ARSGMR*MRRTSWVRRCCQTTCWTRGTCTTCRATALCRAWIGT*LRS*VQLESGEALT*T 462349
Query: 115 FSSUIRARVIRLLSALPRTMTYLQRRVEWRGFTSSTAPLUC 155
FS IRLLSALPRTMTY R R S P C
Sbjct: 462350 FSCTTLPPSIRLLSALPRTMTYSSRNCLARTTCSCGTPWSC 462472
>ref|XM_001562983.1| Leishmania braziliensis MHOM/BR/75/M2904 ABC1 transporter, putative
(LbrM11_V2.1000) partial mRNA
Length = 5739
Score = 75.1 bits (183), Expect = 6e-12, Method: Composition-based stats.
Identities = 77/161 (47%), Positives = 82/161 (50%), Gaps = 6/161 (3%)
Frame = +2
Query: 1 ARCSASRLCAQSSAFUSQCCUVSCSTATLSRSPTTMQCSPVRQIPWYUQPAATRCXXXXX 60
ARCSASRLCAQSSAF SQCC VSCSTATLSRSPTTMQCSPVRQIPWY QPAATRC
Sbjct: 3506 ARCSASRLCAQSSAF*SQCC*VSCSTATLSRSPTTMQCSPVRQIPWY*QPAATRCGEASR 3685
Query: 61 XXXXXXXXXHIFRQVACSXXXXXXXXXXXXXXASVVXRVMIPR------CVATCPRMFKT 114
C A+ + R I + + + T
Sbjct: 3686 ARSGMR*MRRTSWVRRCCQTTCWTRGTCTTCRATALCRAWIGT*LRS*VQLESGEALT*T 3865
Query: 115 FSSUIRARVIRLLSALPRTMTYLQRRVEWRGFTSSTAPLUC 155
FS IRLLSALPRTMTY R R S P C
Sbjct: 3866 FSCTTLPPSIRLLSALPRTMTYSSRNCLARTTCSCGTPWSC 3988
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.334 0.131 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 468311154
Number of extensions: 6147140
Number of successful extensions: 82791
Number of sequences better than 10: 1
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 82297
Number of HSP's successfully gapped: 1
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 15 (7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (19.6 bits)
S2: 78 (34.7 bits)
Query= gi|154333587|ref|NC_009303.1|:subseq(73984,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 11
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
emb|AM494948.1| Leishmania braziliensis chromosome 11 249 1e-64
emb|AM502229.1| Leishmania infantum chromosome 11 86 3e-22
ref|XM_001562904.1| Leishmania braziliensis MHOM/BR/75/M2904 tet... 37 2.3
>emb|AM494948.1| Leishmania braziliensis chromosome 11
Length = 558624
Score = 249 bits (637), Expect = 1e-64, Method: Composition-based stats.
Identities = 133/166 (80%), Positives = 133/166 (80%)
Frame = +2
Query: 1 NPFPESETNHLRQQAQIRRRCYASWQSPCDCLDSFTPLKXLPVSCSRGFSGPXXXXXXXX 60
NPFPESETNHLRQQAQIRRRCYASWQSPCDCLDSFTPLK LPVSCSRGFSGP
Sbjct: 73985 NPFPESETNHLRQQAQIRRRCYASWQSPCDCLDSFTPLK*LPVSCSRGFSGPRSVSSSNL 74164
Query: 61 XXXXXXXXGERVCYICFXXXXXXXXXXXXXXXXFRTSFALEARVGNGCCLVYELTCITEA 120
GERVCYICF FRTSFALEARVGNGCCLVYELTCITEA
Sbjct: 74165 LAVVARS*GERVCYICFSYLISPLLNYLPPLLLFRTSFALEARVGNGCCLVYELTCITEA 74344
Query: 121 FSLKSKDFFVFRRSADLVVLSYSLTVHRHASERPVQVLGKGSEGKS 166
FSLKSKDFFVFRRSADLVVLSYSLTVHRHASERPVQVLGKGSEGKS
Sbjct: 74345 FSLKSKDFFVFRRSADLVVLSYSLTVHRHASERPVQVLGKGSEGKS 74482
>emb|AM502229.1| Leishmania infantum chromosome 11
Length = 575805
Score = 85.9 bits (211), Expect(2) = 3e-22, Method: Composition-based stats.
Identities = 54/129 (41%), Positives = 60/129 (46%)
Frame = -1
Query: 1 NPFPESETNHLRQQAQIRRRCYASWQSPCDCLDSFTPLKXLPVSCSRGFSGPXXXXXXXX 60
NPF ESE N Q QIRRRC ASW+SPCDC D+F P VS R F
Sbjct: 206217 NPFLESEANRTN*QGQIRRRCCASWRSPCDCPDTFIPSNQPSVSSCRSFDEVGGVGPCSS 206038
Query: 61 XXXXXXXXGERVCYICFXXXXXXXXXXXXXXXXFRTSFALEARVGNGCCLVYELTCITEA 120
GER+C+ICF TSFAL R+ CL Y + CI A
Sbjct: 206037 FAAVARNGGERMCHICFSYYFIRPLFNYLLPLVLYTSFALGMRITTVWCLAYLVICIAGA 205858
Query: 121 FSLKSKDFF 129
FSLK FF
Sbjct: 205857 FSLKPSAFF 205831
Score = 44.3 bits (103), Expect(2) = 3e-22, Method: Composition-based stats.
Identities = 24/39 (61%), Positives = 27/39 (69%)
Frame = -2
Query: 128 FFVFRRSADLVVLSYSLTVHRHASERPVQVLGKGSEGKS 166
F R+A L+ LS+S RHASER VQV GKGSEGKS
Sbjct: 205832 FLCLPRTAHLIALSHSPAARRHASERFVQVRGKGSEGKS 205716
>ref|XM_001562904.1| Leishmania braziliensis MHOM/BR/75/M2904 tetratricopeptide repeat
(TPR) protein (LbrM11_V2.0190) partial mRNA
Length = 1218
Score = 37.0 bits (84), Expect = 2.3, Method: Composition-based stats.
Identities = 17/17 (100%), Positives = 17/17 (100%)
Frame = +3
Query: 150 ASERPVQVLGKGSEGKS 166
ASERPVQVLGKGSEGKS
Sbjct: 3 ASERPVQVLGKGSEGKS 53
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.329 0.140 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 519456358
Number of extensions: 6857774
Number of successful extensions: 40691
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 40685
Number of HSP's successfully gapped: 0
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 15 (7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.0 bits)
S2: 78 (34.7 bits)
Query= gi|154333587|ref|NC_009303.1|:subseq(73984,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 11
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
emb|AM494948.1| Leishmania braziliensis chromosome 11 273 1e-71
emb|AM502229.1| Leishmania infantum chromosome 11 86 9e-19
gb|AC149584.4| Mus musculus BAC clone RP24-298L13 from 8, comple... 36 5.1
gb|AC140929.4| Mus musculus BAC clone RP23-258I3 from 8, complet... 36 5.1
>emb|AM494948.1| Leishmania braziliensis chromosome 11
Length = 558624
Score = 273 bits (698), Expect = 1e-71, Method: Composition-based stats.
Identities = 132/153 (86%), Positives = 132/153 (86%)
Frame = +3
Query: 1 TLFQKAKQIIXGSKHKXDDAATRRGNHRVIAWIASPPXSNFQXAVLAVSVGPGVUAHPIY 60
TLFQKAKQII GSKHK DDAATRRGNHRVIAWIASPP SNFQ AVLAVSVGPGV AHPIY
Sbjct: 73986 TLFQKAKQII*GSKHK*DDAATRRGNHRVIAWIASPP*SNFQ*AVLAVSVGPGV*AHPIY 74165
Query: 61 SLWXREVEGRGFVTYAFLTSSAHFSTTCLPFFCFVHHLRLRRESGTAVVLCMNSPASPKX 120
SLW REVEGRGFVTYAFLTSSAHFSTTCLPFFCFVHHLRLRRESGTAVVLCMNSPASPK
Sbjct: 74166 SLW*REVEGRGFVTYAFLTSSAHFSTTCLPFFCFVHHLRLRRESGTAVVLCMNSPASPKR 74345
Query: 121 XXXXXXXXXXXGGPRIXXFFRTVUQYIAMPPKG 153
GGPRI FFRTV QYIAMPPKG
Sbjct: 74346 FR*SRRIFSFSGGPRI**FFRTV*QYIAMPPKG 74444
>emb|AM502229.1| Leishmania infantum chromosome 11
Length = 575805
Score = 85.5 bits (210), Expect(2) = 9e-19, Method: Composition-based stats.
Identities = 58/120 (48%), Positives = 72/120 (60%), Gaps = 1/120 (0%)
Frame = -2
Query: 1 TLFQKAKQIIXGSKHKXDDAATRRGNHRVIAWIASPPXSNFQXAVLAVSVGPGVUAHPIY 60
TLF KAKQI+ S+ K DDAA R G+ R I I S ++ Q A A + ++
Sbjct: 206216 TLF*KAKQIVQISRGKYDDAAARHGDRRAIVQILSSLQTSLQ*APAAALMRSEAWVRAVH 206037
Query: 61 SLWXREVEGRGFVTYAFLTSSA-HFSTTCLPFFCFVHHLRLRRESGTAVVLCMNSPASPK 119
SL RE+EGRG VTYA LT+S+ HFSTTC CF HHL L ES + VL + S ASP+
Sbjct: 206036 SLR*REMEGRGCVTYASLTTSSDHFSTTCF-LLCFTHHLPLG*ESRPSGVLRI*SSASPE 205860
Score = 33.1 bits (74), Expect(2) = 9e-19, Method: Composition-based stats.
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = -3
Query: 135 RIXXFFRTVUQYIAMPPKG 153
RI F TV Q++AMPPKG
Sbjct: 205810 RI**LFHTVRQHVAMPPKG 205754
>gb|AC149584.4| Mus musculus BAC clone RP24-298L13 from 8, complete sequence
Length = 182904
Score = 35.8 bits (81), Expect = 5.1, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 25/38 (65%)
Frame = -2
Query: 70 RGFVTYAFLTSSAHFSTTCLPFFCFVHHLRLRRESGTA 107
+G +T FLT++AHFS CL C VH ++++ E T+
Sbjct: 92552 KGNITETFLTATAHFSFACL---CHVHQMKMKNEVFTS 92448
>gb|AC140929.4| Mus musculus BAC clone RP23-258I3 from 8, complete sequence
Length = 221905
Score = 35.8 bits (81), Expect = 5.1, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 25/38 (65%)
Frame = +3
Query: 70 RGFVTYAFLTSSAHFSTTCLPFFCFVHHLRLRRESGTA 107
+G +T FLT++AHFS CL C VH ++++ E T+
Sbjct: 35217 KGNITETFLTATAHFSFACL---CHVHQMKMKNEVFTS 35321
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.352 0.155 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 488083816
Number of extensions: 7059694
Number of successful extensions: 64094
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 64074
Number of HSP's successfully gapped: 0
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 14 (7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (19.2 bits)
S2: 78 (34.7 bits)
Query= gi|154333587|ref|NC_009303.1|:subseq(73984,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 11
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
emb|AM494948.1| Leishmania braziliensis chromosome 11 260 1e-67
emb|AM502229.1| Leishmania infantum chromosome 11 99 4e-23
>emb|AM494948.1| Leishmania braziliensis chromosome 11
Length = 558624
Score = 260 bits (664), Expect = 1e-67, Method: Composition-based stats.
Identities = 150/166 (90%), Positives = 150/166 (90%)
Frame = +1
Query: 1 PFSRKRNKSFKAASTNKTTLLRVVAITVULPGXLHPLKVTSSKLFSRFQWAQECELIQFT 60
PFSRKRNKSFKAASTNKTTLLRVVAITV LPG LHPLKVTSSKLFSRFQWAQECELIQFT
Sbjct: 73987 PFSRKRNKSFKAASTNKTTLLRVVAITV*LPG*LHPLKVTSSKLFSRFQWAQECELIQFT 74166
Query: 61 RCGSAKLRGEGLLHMLFLPHQPTSQLLASPSSVSYIICAUGASRERLLSCVUTHLHHRSV 120
RCGSAKLRGEGLLHMLFLPHQPTSQLLASPSSVSYIICA GASRERLLSCV THLHHRSV
Sbjct: 74167 RCGSAKLRGEGLLHMLFLPHQPTSQLLASPSSVSYIICA*GASRERLLSCV*THLHHRSV 74346
Query: 121 FAEVEGFFRFPAVRGXXXXXXXXXXXXPCLRKASPSPRQRLRRQKP 166
FAEVEGFFRFPAVRG PCLRKASPSPRQRLRRQKP
Sbjct: 74347 FAEVEGFFRFPAVRGSSSSFVQSDSTSPCLRKASPSPRQRLRRQKP 74484
>emb|AM502229.1| Leishmania infantum chromosome 11
Length = 575805
Score = 99.4 bits (246), Expect(2) = 4e-23, Method: Composition-based stats.
Identities = 65/121 (53%), Positives = 77/121 (63%), Gaps = 1/121 (0%)
Frame = -3
Query: 1 PFSRKRNKSFKAASTNKTTLLRVVAITVULPGXLHPLKVTSSKLFSRFQWAQECELIQFT 60
PFSRKR+KS+K A N TTLLRV+AI V L HP K SKL + + +QF
Sbjct: 206215 PFSRKRSKSYKLAGANTTTLLRVMAIAVRLSRYFHPFKPAFSKLLPQL**GRRRGSVQFI 206036
Query: 61 RCGSAKLRGEGLLHM-LFLPHQPTSQLLASPSSVSYIICAUGASRERLLSCVUTHLHHRS 119
RCGSAK RGE + HM L L HQ T QLLAS S +IIC + +RL+SCV +HLH RS
Sbjct: 206035 RCGSAKWRGEDVSHMLLLLLHQTTFQLLAS-SCALHIICPWDENHDRLVSCVSSHLHRRS 205859
Query: 120 V 120
V
Sbjct: 205858 V 205856
Score = 33.9 bits (76), Expect(2) = 4e-23, Method: Composition-based stats.
Identities = 15/19 (78%), Positives = 15/19 (78%)
Frame = -1
Query: 148 PCLRKASPSPRQRLRRQKP 166
PCLRK SPRQRLR QKP
Sbjct: 205770 PCLRKVCSSPRQRLRGQKP 205714
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.329 0.138 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 489083740
Number of extensions: 6853039
Number of successful extensions: 43245
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 43243
Number of HSP's successfully gapped: 0
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 15 (7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.0 bits)
S2: 78 (34.7 bits)
Query= gi|154333778|ref|NC_009304.1|:subseq(178903,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 12
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
ref|XM_001563046.1| Leishmania braziliensis MHOM/BR/75/M2904 hyp... 201 7e-50
emb|AM494949.1| Leishmania braziliensis chromosome 12 201 7e-50
emb|AM502230.1| Leishmania infantum chromosome 12 106 3e-21
ref|XM_001463938.1| Leishmania infantum JPCM5 hypothetical prote... 105 5e-21
ref|XM_001681598.1| Leishmania major hypothetical protein, conse... 104 9e-21
>ref|XM_001563046.1| Leishmania braziliensis MHOM/BR/75/M2904 hypothetical protein,
conserved (LbrM12_V2.0460) partial mRNA
Length = 2172
Score = 201 bits (511), Expect = 7e-50, Method: Composition-based stats.
Identities = 120/155 (77%), Positives = 120/155 (77%)
Frame = -1
Query: 12 CGAIAHAVKGRHGLWXAVAVKLGSRSSIXXXXXXXXXXXXXXXXXXTPTLAMKSVTXXXX 71
CGAIAHAVKGRHGLW AVAVKLGSRSSI TPTLAMKSVT
Sbjct: 780 CGAIAHAVKGRHGLW*AVAVKLGSRSSIGVRRGGHRGRGGVAAHRRTPTLAMKSVTQQCR 601
Query: 72 XXXXXXXXXXXTKRQACNAGCCGLYDLVRRRWCUGLRWYTGARGFGCVGSHSSPVQFATT 131
TKRQACNAGCCGLYDLVRRRWC GLRWYTGARGFGCVGSHSSPVQFATT
Sbjct: 600 EEGVRGERRQVTKRQACNAGCCGLYDLVRRRWC*GLRWYTGARGFGCVGSHSSPVQFATT 421
Query: 132 SLAPHSRGVGLPVRQEHRSEEGRVAQDGVAALPAG 166
SLAPHSRGVGLPVRQEHRSEEGRVAQDGVAALPAG
Sbjct: 420 SLAPHSRGVGLPVRQEHRSEEGRVAQDGVAALPAG 316
>emb|AM494949.1| Leishmania braziliensis chromosome 12
Length = 466080
Score = 201 bits (511), Expect = 7e-50, Method: Composition-based stats.
Identities = 120/155 (77%), Positives = 120/155 (77%)
Frame = +2
Query: 12 CGAIAHAVKGRHGLWXAVAVKLGSRSSIXXXXXXXXXXXXXXXXXXTPTLAMKSVTXXXX 71
CGAIAHAVKGRHGLW AVAVKLGSRSSI TPTLAMKSVT
Sbjct: 178937 CGAIAHAVKGRHGLW*AVAVKLGSRSSIGVRRGGHRGRGGVAAHRRTPTLAMKSVTQQCR 179116
Query: 72 XXXXXXXXXXXTKRQACNAGCCGLYDLVRRRWCUGLRWYTGARGFGCVGSHSSPVQFATT 131
TKRQACNAGCCGLYDLVRRRWC GLRWYTGARGFGCVGSHSSPVQFATT
Sbjct: 179117 EEGVRGERRQVTKRQACNAGCCGLYDLVRRRWC*GLRWYTGARGFGCVGSHSSPVQFATT 179296
Query: 132 SLAPHSRGVGLPVRQEHRSEEGRVAQDGVAALPAG 166
SLAPHSRGVGLPVRQEHRSEEGRVAQDGVAALPAG
Sbjct: 179297 SLAPHSRGVGLPVRQEHRSEEGRVAQDGVAALPAG 179401
>emb|AM502230.1| Leishmania infantum chromosome 12
Length = 500736
Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats.
Identities = 71/151 (47%), Positives = 83/151 (54%)
Frame = +1
Query: 15 IAHAVKGRHGLWXAVAVKLGSRSSIXXXXXXXXXXXXXXXXXXTPTLAMKSVTXXXXXXX 74
IAHAV+GRHGL AVAVKLGS + TL +KSV
Sbjct: 187621 IAHAVEGRHGLR*AVAVKLGS*GEVDRWRRGRHSCCRVVAHRSDSTLTLKSVAQQCHKEG 187800
Query: 75 XXXXXXXXTKRQACNAGCCGLYDLVRRRWCUGLRWYTGARGFGCVGSHSSPVQFATTSLA 134
TKRQ C+AG G DLVRR+W LR + ARG C G+ Q A TSLA
Sbjct: 187801 MRGERRQVTKRQPCDAGRGGRCDLVRRKWRWNLRRHARARGLACAGNSGGLTQLAATSLA 187980
Query: 135 PHSRGVGLPVRQEHRSEEGRVAQDGVAALPA 165
P+ R VGLPVRQE+RS+EGR+AQD VA + A
Sbjct: 187981 PYGRRVGLPVRQENRSKEGRIAQDSVATVAA 188073
>ref|XM_001463938.1| Leishmania infantum JPCM5 hypothetical protein, conserved
(LinJ12.0400) partial mRNA
Length = 1956
Score = 105 bits (262), Expect = 5e-21, Method: Composition-based stats.
Identities = 71/151 (47%), Positives = 83/151 (54%)
Frame = -1
Query: 15 IAHAVKGRHGLWXAVAVKLGSRSSIXXXXXXXXXXXXXXXXXXTPTLAMKSVTXXXXXXX 74
IAHAV+GRHGL AVAVKLGS + TL +KSV
Sbjct: 561 IAHAVEGRHGLR*AVAVKLGS*GEVDRWRRGRHSCCRVVAHRSDSTLTLKSVAQQCHKEG 382
Query: 75 XXXXXXXXTKRQACNAGCCGLYDLVRRRWCUGLRWYTGARGFGCVGSHSSPVQFATTSLA 134
TKRQ C+AG G DLVRR+W LR + ARG C G+ Q A TSLA
Sbjct: 381 MRGERRQVTKRQPCDAGRGGRCDLVRRKWRWNLRRHARARGLACAGNSGGLTQLAATSLA 202
Query: 135 PHSRGVGLPVRQEHRSEEGRVAQDGVAALPA 165
P+ R VGLPVRQE+RS+EGR+AQD VA + A
Sbjct: 201 PYGRRVGLPVRQENRSKEGRIAQDSVATVAA 109
>ref|XM_001681598.1| Leishmania major hypothetical protein, conserved (LmjF12.0440)
partial mRNA
Length = 2133
Score = 104 bits (260), Expect = 9e-21, Method: Composition-based stats.
Identities = 72/151 (47%), Positives = 82/151 (54%)
Frame = -1
Query: 15 IAHAVKGRHGLWXAVAVKLGSRSSIXXXXXXXXXXXXXXXXXXTPTLAMKSVTXXXXXXX 74
IAHAVKGRHGL AVAVKLG+R + PTLA+K V
Sbjct: 735 IAHAVKGRHGLR*AVAVKLGNRGGVGMRCGGCHSGCRVAAHRPAPTLALKGVAQQCHKEG 556
Query: 75 XXXXXXXXTKRQACNAGCCGLYDLVRRRWCUGLRWYTGARGFGCVGSHSSPVQFATTSLA 134
TKRQ C DLVRR+W R + ARG C G+ Q ATTSLA
Sbjct: 555 VRGERRQVTKRQPC--------DLVRRKWRWEPRRHARARGLACAGNSGGLTQLATTSLA 400
Query: 135 PHSRGVGLPVRQEHRSEEGRVAQDGVAALPA 165
P+SR VGLPVRQE+RS+EGRVAQD VA + A
Sbjct: 399 PYSRRVGLPVRQENRSKEGRVAQDSVATVTA 307
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.326 0.136 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 441725580
Number of extensions: 6349129
Number of successful extensions: 46288
Number of sequences better than 10: 1
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 46247
Number of HSP's successfully gapped: 1
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 15 (7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.0 bits)
S2: 78 (34.7 bits)
Query= gi|154333778|ref|NC_009304.1|:subseq(178903,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 12
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
ref|XM_001563046.1| Leishmania braziliensis MHOM/BR/75/M2904 hyp... 104 1e-20
emb|AM494949.1| Leishmania braziliensis chromosome 12 104 1e-20
ref|XM_001681598.1| Leishmania major hypothetical protein, conse... 64 1e-08
ref|XM_001463938.1| Leishmania infantum JPCM5 hypothetical prote... 61 1e-07
emb|AM502230.1| Leishmania infantum chromosome 12 61 1e-07
>ref|XM_001563046.1| Leishmania braziliensis MHOM/BR/75/M2904 hypothetical protein,
conserved (LbrM12_V2.0460) partial mRNA
Length = 2172
Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats.
Identities = 83/166 (50%), Positives = 83/166 (50%)
Frame = -2
Query: 1 LAKXXXXXXXXXXQSRMRURAATVSGKQXQUNLEAEAASACGVVDXXXXXXXXXXXXXXX 60
LAK QSRMR RAATVSGKQ Q NLEAEAASACGVVD
Sbjct: 812 LAKVVAEAAEVVAQSRMR*RAATVSGKQ*Q*NLEAEAASACGVVDTAAAAALLLTGGLPP 633
Query: 61 XXXXXXXXXXXXXXXXXXXXXXPNGRRAMLAAVASTILXXXXXXXXXXXTLERXXXXXXX 120
PNGRRAMLAAVASTIL TLER
Sbjct: 632 SP*KASRSSAARKA*GESAGRSPNGRRAMLAAVASTILSAAGGAEGSGGTLERADLAALV 453
Query: 121 XXXXXXXXXXXXXXHTAGALACQYDKSTARRKDASHKTAXPRSLLD 166
HTAGALACQYDKSTARRKDASHKTA PRSLLD
Sbjct: 452 VTAALCSLRRRASRHTAGALACQYDKSTARRKDASHKTA*PRSLLD 315
>emb|AM494949.1| Leishmania braziliensis chromosome 12
Length = 466080
Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats.
Identities = 83/166 (50%), Positives = 83/166 (50%)
Frame = +3
Query: 1 LAKXXXXXXXXXXQSRMRURAATVSGKQXQUNLEAEAASACGVVDXXXXXXXXXXXXXXX 60
LAK QSRMR RAATVSGKQ Q NLEAEAASACGVVD
Sbjct: 178905 LAKVVAEAAEVVAQSRMR*RAATVSGKQ*Q*NLEAEAASACGVVDTAAAAALLLTGGLPP 179084
Query: 61 XXXXXXXXXXXXXXXXXXXXXXPNGRRAMLAAVASTILXXXXXXXXXXXTLERXXXXXXX 120
PNGRRAMLAAVASTIL TLER
Sbjct: 179085 SP*KASRSSAARKA*GESAGRSPNGRRAMLAAVASTILSAAGGAEGSGGTLERADLAALV 179264
Query: 121 XXXXXXXXXXXXXXHTAGALACQYDKSTARRKDASHKTAXPRSLLD 166
HTAGALACQYDKSTARRKDASHKTA PRSLLD
Sbjct: 179265 VTAALCSLRRRASRHTAGALACQYDKSTARRKDASHKTA*PRSLLD 179402
>ref|XM_001681598.1| Leishmania major hypothetical protein, conserved (LmjF12.0440)
partial mRNA
Length = 2133
Score = 64.3 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 58/151 (38%), Positives = 62/151 (41%)
Frame = -2
Query: 15 SRMRURAATVSGKQXQUNLEAEAASACGVVDXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 74
SRMR RAATVSGKQ Q NLE E SACGV
Sbjct: 734 SRMR*RAATVSGKQ*Q*NLETEVESACGVAAATAAAGLPLTGRLLPSPSKASHSSATRKA 555
Query: 75 XXXXXXXXPNGRRAMLAAVASTILXXXXXXXXXXXTLERXXXXXXXXXXXXXXXXXXXXX 134
PNG RA+L+A + T R
Sbjct: 554 *GESAGKSPNGSRAILSAASGA--------GSPDGTPARVDSPALVTAAALRSLRRRASR 399
Query: 135 HTAGALACQYDKSTARRKDASHKTAXPRSLL 165
H AGALACQYD+ TARRKDASHKTA PRS L
Sbjct: 398 HIAGALACQYDRRTARRKDASHKTA*PRSPL 306
>ref|XM_001463938.1| Leishmania infantum JPCM5 hypothetical protein, conserved
(LinJ12.0400) partial mRNA
Length = 1956
Score = 60.8 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 62/150 (41%), Positives = 64/150 (42%)
Frame = -2
Query: 16 RMRURAATVSGKQXQUNLEAEAASACGVVDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 75
RMR RAATVSGKQ Q NLEAE S GV
Sbjct: 557 RMRWRAATVSGKQ*Q*NLEAEVKSTGGVAAATAAAELSLTDRIPRSP*KASHSSATRKA* 378
Query: 76 XXXXXXXPNGRRAMLAAVASTILXXXXXXXXXXXTLERXXXXXXXXXXXXXXXXXXXXXH 135
PNG RAMLAAVA+ IL T R H
Sbjct: 377 GESAGKSPNGSRAMLAAVAAAILSAASGAGISDDTPARVDSLALVTAAALRSLRRRASRH 198
Query: 136 TAGALACQYDKSTARRKDASHKTAXPRSLL 165
AGALACQYD+ TARRKDASHKTA PRS L
Sbjct: 197 MAGALACQYDRRTARRKDASHKTA*PRSPL 108
>emb|AM502230.1| Leishmania infantum chromosome 12
Length = 500736
Score = 60.8 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 62/150 (41%), Positives = 64/150 (42%)
Frame = +2
Query: 16 RMRURAATVSGKQXQUNLEAEAASACGVVDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 75
RMR RAATVSGKQ Q NLEAE S GV
Sbjct: 187625 RMRWRAATVSGKQ*Q*NLEAEVKSTGGVAAATAAAELSLTDRIPRSP*KASHSSATRKA* 187804
Query: 76 XXXXXXXPNGRRAMLAAVASTILXXXXXXXXXXXTLERXXXXXXXXXXXXXXXXXXXXXH 135
PNG RAMLAAVA+ IL T R H
Sbjct: 187805 GESAGKSPNGSRAMLAAVAAAILSAASGAGISDDTPARVDSLALVTAAALRSLRRRASRH 187984
Query: 136 TAGALACQYDKSTARRKDASHKTAXPRSLL 165
AGALACQYD+ TARRKDASHKTA PRS L
Sbjct: 187985 MAGALACQYDRRTARRKDASHKTA*PRSPL 188074
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.330 0.132 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 160525443
Number of extensions: 584274
Number of successful extensions: 1438
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 1438
Number of HSP's successfully gapped: 0
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 15 (7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.0 bits)
S2: 78 (34.7 bits)
Query= gi|154333778|ref|NC_009304.1|:subseq(178903,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 12
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
ref|XM_001563046.1| Leishmania braziliensis MHOM/BR/75/M2904 hyp... 160 1e-37
emb|AM494949.1| Leishmania braziliensis chromosome 12 160 1e-37
ref|XM_001463938.1| Leishmania infantum JPCM5 hypothetical prote... 82 5e-14
emb|AM502230.1| Leishmania infantum chromosome 12 82 5e-14
ref|XM_001681598.1| Leishmania major hypothetical protein, conse... 74 2e-11
>ref|XM_001563046.1| Leishmania braziliensis MHOM/BR/75/M2904 hypothetical protein,
conserved (LbrM12_V2.0460) partial mRNA
Length = 2172
Score = 160 bits (406), Expect = 1e-37, Method: Composition-based stats.
Identities = 115/166 (69%), Positives = 115/166 (69%)
Frame = -3
Query: 1 SPRSSRKPPKLWRNRACGEGPPRSLVSSSSETWKPKQHXXXXXXXXXXXXXXXSPADSHP 60
SPRSSRKPPKLWRNRACGEGPPRSLVSSSSETWKPKQH SPADSHP
Sbjct: 811 SPRSSRKPPKLWRNRACGEGPPRSLVSSSSETWKPKQHRRAAWWTPRPRRRCCSPADSHP 632
Query: 61 RHEKRHXXXXXXXXXXXXXXXHQTAGVQCWLLWPLRSCPPQVVLRAPVVHWSARIWLRWX 120
RHEKRH HQTAGVQCWLLWPLRSCPPQVVLRAPVVHWSARIWLRW
Sbjct: 631 RHEKRHAAVPRGRREGRAPAGHQTAGVQCWLLWPLRSCPPQVVLRAPVVHWSARIWLRW* 452
Query: 121 SQQPCAVCDDEPRATQQGRWPASXXXXXXXXXXXXXXXXXXXXCWT 166
SQQPCAVCDDEPRATQQGRWPAS CWT
Sbjct: 451 SQQPCAVCDDEPRATQQGRWPASTTRAPLGGRTRRTRRRSRAPCWT 314
>emb|AM494949.1| Leishmania braziliensis chromosome 12
Length = 466080
Score = 160 bits (406), Expect = 1e-37, Method: Composition-based stats.
Identities = 115/166 (69%), Positives = 115/166 (69%)
Frame = +1
Query: 1 SPRSSRKPPKLWRNRACGEGPPRSLVSSSSETWKPKQHXXXXXXXXXXXXXXXSPADSHP 60
SPRSSRKPPKLWRNRACGEGPPRSLVSSSSETWKPKQH SPADSHP
Sbjct: 178906 SPRSSRKPPKLWRNRACGEGPPRSLVSSSSETWKPKQHRRAAWWTPRPRRRCCSPADSHP 179085
Query: 61 RHEKRHXXXXXXXXXXXXXXXHQTAGVQCWLLWPLRSCPPQVVLRAPVVHWSARIWLRWX 120
RHEKRH HQTAGVQCWLLWPLRSCPPQVVLRAPVVHWSARIWLRW
Sbjct: 179086 RHEKRHAAVPRGRREGRAPAGHQTAGVQCWLLWPLRSCPPQVVLRAPVVHWSARIWLRW* 179265
Query: 121 SQQPCAVCDDEPRATQQGRWPASXXXXXXXXXXXXXXXXXXXXCWT 166
SQQPCAVCDDEPRATQQGRWPAS CWT
Sbjct: 179266 SQQPCAVCDDEPRATQQGRWPASTTRAPLGGRTRRTRRRSRAPCWT 179403
>ref|XM_001463938.1| Leishmania infantum JPCM5 hypothetical protein, conserved
(LinJ12.0400) partial mRNA
Length = 1956
Score = 82.0 bits (201), Expect = 5e-14, Method: Composition-based stats.
Identities = 68/143 (47%), Positives = 76/143 (53%)
Frame = -3
Query: 1 SPRSSRKPPKLWRNRACGEGPPRSLVSSSSETWKPKQHXXXXXXXXXXXXXXXSPADSHP 60
SPR SR+ P+L R+ ACG GPPRS VSSSSETWK + SP H
Sbjct: 601 SPRPSRRLPRLGRDSACGGGPPRSPVSSSSETWKLR*SRQVASRPPQLLQSCRSPIGFHA 422
Query: 61 RHEKRHXXXXXXXXXXXXXXXHQTAGVQCWLLWPLRSCPPQVVLRAPVVHWSARIWLRWX 120
EKR HQTA V+CW WPLRSCPPQV L +P A LRW
Sbjct: 421 HPEKRRTAVPQGRHEGRAPASHQTAAVRCWPRWPLRSCPPQVALESPTTRPRAWTRLRW* 242
Query: 121 SQQPCAVCDDEPRATQQGRWPAS 143
++P A C DEPRA Q RWPAS
Sbjct: 241 QRRPYAACGDEPRAIWQARWPAS 173
>emb|AM502230.1| Leishmania infantum chromosome 12
Length = 500736
Score = 82.0 bits (201), Expect = 5e-14, Method: Composition-based stats.
Identities = 68/143 (47%), Positives = 76/143 (53%)
Frame = +3
Query: 1 SPRSSRKPPKLWRNRACGEGPPRSLVSSSSETWKPKQHXXXXXXXXXXXXXXXSPADSHP 60
SPR SR+ P+L R+ ACG GPPRS VSSSSETWK + SP H
Sbjct: 187581 SPRPSRRLPRLGRDSACGGGPPRSPVSSSSETWKLR*SRQVASRPPQLLQSCRSPIGFHA 187760
Query: 61 RHEKRHXXXXXXXXXXXXXXXHQTAGVQCWLLWPLRSCPPQVVLRAPVVHWSARIWLRWX 120
EKR HQTA V+CW WPLRSCPPQV L +P A LRW
Sbjct: 187761 HPEKRRTAVPQGRHEGRAPASHQTAAVRCWPRWPLRSCPPQVALESPTTRPRAWTRLRW* 187940
Query: 121 SQQPCAVCDDEPRATQQGRWPAS 143
++P A C DEPRA Q RWPAS
Sbjct: 187941 QRRPYAACGDEPRAIWQARWPAS 188009
>ref|XM_001681598.1| Leishmania major hypothetical protein, conserved (LmjF12.0440)
partial mRNA
Length = 2133
Score = 73.9 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 68/143 (47%), Positives = 77/143 (53%)
Frame = -3
Query: 1 SPRSSRKPPKLWRNRACGEGPPRSLVSSSSETWKPKQHXXXXXXXXXXXXXXXSPADSHP 60
SPR SR+ P+ R+RACGEGPPRS VSSSSETWKP+ SPA S+P
Sbjct: 775 SPRPSRRLPRSGRDRACGEGPPRSPVSSSSETWKPRWSRHAVWRLPQRLQGCRSPAGSYP 596
Query: 61 RHEKRHXXXXXXXXXXXXXXXHQTAGVQCWLLWPLRSCPPQVVLRAPVVHWSARIWLRWX 120
R ++R HQTA V RSCPPQV L AP A LRW
Sbjct: 595 RPQRRRTAVPQGRREGRAPASHQTAAV--------RSCPPQVALGAPTARPRAWTRLRW* 440
Query: 121 SQQPCAVCDDEPRATQQGRWPAS 143
++P A CDDEPRA Q RWPAS
Sbjct: 439 QRRPYAACDDEPRAI*QARWPAS 371
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.323 0.133 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 671428848
Number of extensions: 11892053
Number of successful extensions: 99506
Number of sequences better than 10: 1
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 99468
Number of HSP's successfully gapped: 1
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 16 (7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.0 bits)
S2: 78 (34.7 bits)
Query= gi|154333778|ref|NC_009304.1|:subseq(259391,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 12:[revcomp]
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
emb|AM494949.1| Leishmania braziliensis chromosome 12 217 1e-54
emb|AM502230.1| Leishmania infantum chromosome 12 40 0.18
>emb|AM494949.1| Leishmania braziliensis chromosome 12
Length = 466080
Score = 217 bits (552), Expect = 1e-54, Method: Composition-based stats.
Identities = 126/141 (89%), Positives = 126/141 (89%)
Frame = -3
Query: 26 DGXATPKNLCVRFAEGVLSLGQEMARLRKRKXXXXXXXXXXXXQEKIEGMXPPRYSETAA 85
DG ATPKNLCVRFAEGVLSLGQEMARLRKRK QEKIEGM PPRYSETAA
Sbjct: 206614 DG*ATPKNLCVRFAEGVLSLGQEMARLRKRK*VCVCVCVCVCVQEKIEGM*PPRYSETAA 206435
Query: 86 SVIVPFRQEHHRPLSLTQAQTSFQKAVSNXRGKKAGKARTVACMRRKRKLQPFANTYSPD 145
SVIVPFRQEHHRPLSLTQAQTSFQKAVSN RGKKAGKARTVACMRRKRKLQPFANTYSPD
Sbjct: 206434 SVIVPFRQEHHRPLSLTQAQTSFQKAVSN*RGKKAGKARTVACMRRKRKLQPFANTYSPD 206255
Query: 146 PLHTQPLICVLSSAQCAHSRE 166
PLHTQPLICVLSSAQCAHSRE
Sbjct: 206254 PLHTQPLICVLSSAQCAHSRE 206192
Score = 96.3 bits (238), Expect = 3e-18, Method: Composition-based stats.
Identities = 53/69 (76%), Positives = 53/69 (76%)
Frame = -3
Query: 26 DGXATPKNLCVRFAEGVLSLGQEMARLRKRKXXXXXXXXXXXXQEKIEGMXPPRYSETAA 85
DG AT KNLCV FAEGVLSLGQEMARLRKRK QEKIEGM PPRYSETAA
Sbjct: 206905 DG*ATSKNLCVHFAEGVLSLGQEMARLRKRK------*VCVCVQEKIEGM*PPRYSETAA 206744
Query: 86 SVIVPFRQE 94
SVIVPFRQE
Sbjct: 206743 SVIVPFRQE 206717
>emb|AM502230.1| Leishmania infantum chromosome 12
Length = 500736
Score = 40.4 bits (93), Expect = 0.18, Method: Composition-based stats.
Identities = 26/56 (46%), Positives = 37/56 (66%), Gaps = 3/56 (5%)
Frame = -2
Query: 81 SETAASVIVPFRQEHHRPLSLTQAQTSFQKAVSNXRGKK---AGKARTVACMRRKR 133
SET A IV RQ+H+RP SL Q QT+F +AV + RG++ +ART +RR++
Sbjct: 304622 SETGARAIVRSRQKHYRPPSLMQTQTTFHEAVRS*RGRRNRQTVEARTAVYLRREK 304455
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.332 0.138 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 384648477
Number of extensions: 4445743
Number of successful extensions: 41333
Number of sequences better than 10: 2
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 41326
Number of HSP's successfully gapped: 3
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 15 (7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (19.6 bits)
S2: 78 (34.7 bits)
Query= gi|154333778|ref|NC_009304.1|:subseq(259391,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 12:[revcomp]
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
emb|AM494949.1| Leishmania braziliensis chromosome 12 202 3e-50
>emb|AM494949.1| Leishmania braziliensis chromosome 12
Length = 466080
Score = 202 bits (514), Expect = 3e-50, Method: Composition-based stats.
Identities = 108/142 (76%), Positives = 108/142 (76%)
Frame = -1
Query: 25 WTDRPLRKTCVYALQKAYFRLVKKWRGYGKESEXXXXXXXXXXXXXXXXACNHHAIVRLP 84
WTDRPLRKTCVYALQKAYFRLVKKWRGYGKESE ACNHHAIVRLP
Sbjct: 206616 WTDRPLRKTCVYALQKAYFRLVKKWRGYGKESECVCVCVCVCVCRRR*RACNHHAIVRLP 206437
Query: 85 QASLCRFGKSIIDXXXXXXXXXXXXXXXXTRGEKKQVRLVLSLVUGGKENSSHSPILTRQ 144
QASLCRFGKSIID TRGEKKQVRLVLSLV GGKENSSHSPILTRQ
Sbjct: 206436 QASLCRFGKSIIDPSA*PRPKRRFRKPSATRGEKKQVRLVLSLV*GGKENSSHSPILTRQ 206257
Query: 145 TPYTPSPXSVCCLPLNVHTVER 166
TPYTPSP SVCCLPLNVHTVER
Sbjct: 206256 TPYTPSP*SVCCLPLNVHTVER 206191
Score = 94.7 bits (234), Expect = 8e-18, Method: Composition-based stats.
Identities = 49/69 (71%), Positives = 49/69 (71%)
Frame = -1
Query: 25 WTDRPLRKTCVYALQKAYFRLVKKWRGYGKESEXXXXXXXXXXXXXXXXACNHHAIVRLP 84
WTDR LRKTCVY LQKAYFRLVKKWRGYGKESE NHHAIVRLP
Sbjct: 206907 WTDRQLRKTCVYTLQKAYFRLVKKWRGYGKESECVCVCRRR*RAC------NHHAIVRLP 206746
Query: 85 QASLCRFGK 93
QASLCRFGK
Sbjct: 206745 QASLCRFGK 206719
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.326 0.138 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 431171902
Number of extensions: 4739664
Number of successful extensions: 35732
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 35725
Number of HSP's successfully gapped: 0
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 15 (7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.0 bits)
S2: 78 (34.7 bits)
Query= gi|154333778|ref|NC_009304.1|:subseq(259391,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 12:[revcomp]
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
emb|AM494949.1| Leishmania braziliensis chromosome 12 223 2e-56
emb|AM502230.1| Leishmania infantum chromosome 12 40 0.31
>emb|AM494949.1| Leishmania braziliensis chromosome 12
Length = 466080
Score = 223 bits (568), Expect = 2e-56, Method: Composition-based stats.
Identities = 128/142 (90%), Positives = 128/142 (90%)
Frame = -2
Query: 25 GRIGHSEKLVCTLCRRRTFAWSRNGAVTEKKVSXXXXXXXXXXAGEDRGHVTTTLXUDCR 84
GRIGHSEKLVCTLCRRRTFAWSRNGAVTEKKVS AGEDRGHVTTTL DCR
Sbjct: 206615 GRIGHSEKLVCTLCRRRTFAWSRNGAVTEKKVSVCVCVCVCVCAGEDRGHVTTTL**DCR 206436
Query: 85 KRHCAVSARASSTPQLDPGPNVVSESRQQLEGKKSRXGSYCRLYEEEKKTPAIRQYLLAR 144
KRHCAVSARASSTPQLDPGPNVVSESRQQLEGKKSR GSYCRLYEEEKKTPAIRQYLLAR
Sbjct: 206435 KRHCAVSARASSTPQLDPGPNVVSESRQQLEGKKSR*GSYCRLYEEEKKTPAIRQYLLAR 206256
Query: 145 PPTHPAPNLCAVFRSMCTQXRE 166
PPTHPAPNLCAVFRSMCTQ RE
Sbjct: 206255 PPTHPAPNLCAVFRSMCTQ*RE 206190
Score = 93.6 bits (231), Expect = 2e-17, Method: Composition-based stats.
Identities = 55/69 (79%), Positives = 56/69 (81%)
Frame = -2
Query: 25 GRIGHSEKLVCTLCRRRTFAWSRNGAVTEKKVSXXXXXXXXXXAGEDRGHVTTTLXUDCR 84
GRIG+ EKLVCTLCRRRTFAWSRNGAVTEKKVS AGEDRGHVTTTL DCR
Sbjct: 206906 GRIGNFEKLVCTLCRRRTFAWSRNGAVTEKKVS------VCVCAGEDRGHVTTTL**DCR 206745
Query: 85 KRHCAVSAR 93
KRHCAVSAR
Sbjct: 206744 KRHCAVSAR 206718
>emb|AM502230.1| Leishmania infantum chromosome 12
Length = 500736
Score = 39.7 bits (91), Expect = 0.31, Method: Composition-based stats.
Identities = 26/53 (49%), Positives = 32/53 (60%), Gaps = 3/53 (5%)
Frame = -1
Query: 86 RHCAVSARASSTPQLDPGPNVVSESRQQLEGKKSR---XGSYCRLYEEEKKTP 135
RHCAV+A A S QLD PN +S SR QLE KK + G +C L+E + P
Sbjct: 304605 RHCAVAAEALSASQLDADPNHISRSRPQLERKKKQTNSRGPHCCLFEARETAP 304447
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.331 0.139 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 521690558
Number of extensions: 7170451
Number of successful extensions: 65748
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 65726
Number of HSP's successfully gapped: 0
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 15 (7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.0 bits)
S2: 78 (34.7 bits)
Query= gi|154333778|ref|NC_009304.1|:subseq(295641,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 12
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
ref|XM_001563059.1| Leishmania braziliensis MHOM/BR/75/M2904 hyp... 157 1e-36
emb|AM494949.1| Leishmania braziliensis chromosome 12 157 1e-36
ref|XM_001681612.1| Leishmania major hypothetical protein, conse... 86 4e-15
ref|XM_001463952.1| Leishmania infantum JPCM5 hypothetical prote... 77 1e-12
emb|AM502230.1| Leishmania infantum chromosome 12 77 1e-12
>ref|XM_001563059.1| Leishmania braziliensis MHOM/BR/75/M2904 hypothetical protein,
conserved (LbrM12_V2.0590) partial mRNA
Length = 5469
Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats.
Identities = 99/150 (66%), Positives = 99/150 (66%)
Frame = +3
Query: 17 YTRLHSFWPDSGCRSAGEQQLPREYHGXXXXXXXXXXXXXXXXXXVDELXXXXXXRXQRW 76
YTRLHSFWPDSGCRSAGEQQLPREYHG VDEL R QRW
Sbjct: 2988 YTRLHSFWPDSGCRSAGEQQLPREYHGCEEPLRPPCSPPPAQALPVDELAAAEEER*QRW 3167
Query: 77 PHLVQANSXXXXXXXXXXXXXXYSRQLECILLRKCRIHXXXXXXXXXXXXAEEHGSRREL 136
PHLVQANS YSRQLECILLRKCRIH AEEHGSRREL
Sbjct: 3168 PHLVQANSGGAAAFAGLRAGGAYSRQLECILLRKCRIHVGGSRGRRGVRGAEEHGSRREL 3347
Query: 137 CKQQHVQYERHLLRPQREHVRSCAAAQRRD 166
CKQQHVQYERHLLRPQREHVRSCAAAQRRD
Sbjct: 3348 CKQQHVQYERHLLRPQREHVRSCAAAQRRD 3437
>emb|AM494949.1| Leishmania braziliensis chromosome 12
Length = 466080
Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats.
Identities = 99/150 (66%), Positives = 99/150 (66%)
Frame = +1
Query: 17 YTRLHSFWPDSGCRSAGEQQLPREYHGXXXXXXXXXXXXXXXXXXVDELXXXXXXRXQRW 76
YTRLHSFWPDSGCRSAGEQQLPREYHG VDEL R QRW
Sbjct: 295690 YTRLHSFWPDSGCRSAGEQQLPREYHGCEEPLRPPCSPPPAQALPVDELAAAEEER*QRW 295869
Query: 77 PHLVQANSXXXXXXXXXXXXXXYSRQLECILLRKCRIHXXXXXXXXXXXXAEEHGSRREL 136
PHLVQANS YSRQLECILLRKCRIH AEEHGSRREL
Sbjct: 295870 PHLVQANSGGAAAFAGLRAGGAYSRQLECILLRKCRIHVGGSRGRRGVRGAEEHGSRREL 296049
Query: 137 CKQQHVQYERHLLRPQREHVRSCAAAQRRD 166
CKQQHVQYERHLLRPQREHVRSCAAAQRRD
Sbjct: 296050 CKQQHVQYERHLLRPQREHVRSCAAAQRRD 296139
>ref|XM_001681612.1| Leishmania major hypothetical protein, conserved (LmjF12.0590)
partial mRNA
Length = 5577
Score = 85.9 bits (211), Expect = 4e-15, Method: Composition-based stats.
Identities = 64/147 (43%), Positives = 71/147 (48%)
Frame = +3
Query: 20 LHSFWPDSGCRSAGEQQLPREYHGXXXXXXXXXXXXXXXXXXVDELXXXXXXRXQRWPHL 79
LHSFW S RSAGEQ+LPR+YHG V EL +R PH
Sbjct: 3216 LHSFWSGSRRRSAGEQELPRQYHGPEESRRPPRSPPPQQAVEVSEL*AKEER*-RRRPHR 3392
Query: 80 VQANSXXXXXXXXXXXXXXYSRQLECILLRKCRIHXXXXXXXXXXXXAEEHGSRRELCKQ 139
VQA +S+ ECI+LRK H A + G R ELCK
Sbjct: 3393 VQAEPGGAPTFAGVYVCAAHSQHAECIVLRKHHRHGSGPRDRRAVCGAGQRGCRCELCKP 3572
Query: 140 QHVQYERHLLRPQREHVRSCAAAQRRD 166
QHVQ E HLLRPQ EH RSCAAAQ RD
Sbjct: 3573 QHVQPEWHLLRPQSEHARSCAAAQCRD 3653
>ref|XM_001463952.1| Leishmania infantum JPCM5 hypothetical protein, conserved
(LinJ12.0540) partial mRNA
Length = 5754
Score = 77.4 bits (189), Expect = 1e-12, Method: Composition-based stats.
Identities = 63/147 (42%), Positives = 73/147 (49%)
Frame = +3
Query: 20 LHSFWPDSGCRSAGEQQLPREYHGXXXXXXXXXXXXXXXXXXVDELXXXXXXRXQRWPHL 79
LHSFW SG RSAGEQ+LPR+YHG V EL + +R P
Sbjct: 3387 LHSFWSGSGRRSAGEQELPRQYHGPEEPRRPPRSPPPQQAVEVGELRAKEE*Q-RRRPRR 3563
Query: 80 VQANSXXXXXXXXXXXXXXYSRQLECILLRKCRIHXXXXXXXXXXXXAEEHGSRRELCKQ 139
VQA + +S+ ECI+LRK + A + G RRE CK
Sbjct: 3564 VQAEAGGASTFAGVYAWAAHSQHAECIVLRKRHRNGGGPRDRRAVCGAGQRGCRRERCKP 3743
Query: 140 QHVQYERHLLRPQREHVRSCAAAQRRD 166
QH Q ERHLL PQ EH RSCAAAQRRD
Sbjct: 3744 QHFQPERHLL*PQSEHARSCAAAQRRD 3824
>emb|AM502230.1| Leishmania infantum chromosome 12
Length = 500736
Score = 77.4 bits (189), Expect = 1e-12, Method: Composition-based stats.
Identities = 63/147 (42%), Positives = 73/147 (49%)
Frame = +3
Query: 20 LHSFWPDSGCRSAGEQQLPREYHGXXXXXXXXXXXXXXXXXXVDELXXXXXXRXQRWPHL 79
LHSFW SG RSAGEQ+LPR+YHG V EL + +R P
Sbjct: 325929 LHSFWSGSGRRSAGEQELPRQYHGPEEPRRPPRSPPPQQAVEVGELRAKEE*Q-RRRPRR 326105
Query: 80 VQANSXXXXXXXXXXXXXXYSRQLECILLRKCRIHXXXXXXXXXXXXAEEHGSRRELCKQ 139
VQA + +S+ ECI+LRK + A + G RRE CK
Sbjct: 326106 VQAEAGGASTFAGVYAWAAHSQHAECIVLRKRHRNGGGPRDRRAVCGAGQRGCRRERCKP 326285
Query: 140 QHVQYERHLLRPQREHVRSCAAAQRRD 166
QH Q ERHLL PQ EH RSCAAAQRRD
Sbjct: 326286 QHFQPERHLL*PQSEHARSCAAAQRRD 326366
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.329 0.138 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 404255227
Number of extensions: 4080740
Number of successful extensions: 30107
Number of sequences better than 10: 4
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 30098
Number of HSP's successfully gapped: 4
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 15 (7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.0 bits)
S2: 78 (34.7 bits)
Query= gi|154333778|ref|NC_009304.1|:subseq(295641,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 12
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
ref|XM_001563059.1| Leishmania braziliensis MHOM/BR/75/M2904 hyp... 200 1e-49
emb|AM494949.1| Leishmania braziliensis chromosome 12 200 1e-49
ref|XM_001681612.1| Leishmania major hypothetical protein, conse... 131 7e-29
ref|XM_001463952.1| Leishmania infantum JPCM5 hypothetical prote... 125 3e-27
emb|AM502230.1| Leishmania infantum chromosome 12 125 3e-27
>ref|XM_001563059.1| Leishmania braziliensis MHOM/BR/75/M2904 hypothetical protein,
conserved (LbrM12_V2.0590) partial mRNA
Length = 5469
Score = 200 bits (508), Expect = 1e-49, Method: Composition-based stats.
Identities = 112/166 (67%), Positives = 112/166 (67%)
Frame = +1
Query: 1 QSGXXXXXXXXXXXXPIPVFTPSGLIVDAEAQENNSFLESTTAARSHSDLRARRPRRXXX 60
QSG PIPVFTPSGLIVDAEAQENNSFLESTTAARSHSDLRARRPRR
Sbjct: 2941 QSGAVRQAAAATAGAPIPVFTPSGLIVDAEAQENNSFLESTTAARSHSDLRARRPRRKLS 3120
Query: 61 XXXXXXXXXXXXXRGGRISYKLTLAERQRLRDYVLGEHTAGNLNXXXXXXXXXXXXGREA 120
RGGRISYKLTLAERQRLRDYVLGEHTAGNLN GREA
Sbjct: 3121 QSTNSQQQKKSGSRGGRISYKLTLAERQRLRDYVLGEHTAGNLNASFFASAVSMSAGREA 3300
Query: 121 DGVSAALRNMDPXXXXXXXXXXXXXXTFFDRNASMFDPVLLRNAGI 166
DGVSAALRNMDP TFFDRNASMFDPVLLRNAGI
Sbjct: 3301 DGVSAALRNMDPGANFANNSMFNMNGTFFDRNASMFDPVLLRNAGI 3438
>emb|AM494949.1| Leishmania braziliensis chromosome 12
Length = 466080
Score = 200 bits (508), Expect = 1e-49, Method: Composition-based stats.
Identities = 112/166 (67%), Positives = 112/166 (67%)
Frame = +2
Query: 1 QSGXXXXXXXXXXXXPIPVFTPSGLIVDAEAQENNSFLESTTAARSHSDLRARRPRRXXX 60
QSG PIPVFTPSGLIVDAEAQENNSFLESTTAARSHSDLRARRPRR
Sbjct: 295643 QSGAVRQAAAATAGAPIPVFTPSGLIVDAEAQENNSFLESTTAARSHSDLRARRPRRKLS 295822
Query: 61 XXXXXXXXXXXXXRGGRISYKLTLAERQRLRDYVLGEHTAGNLNXXXXXXXXXXXXGREA 120
RGGRISYKLTLAERQRLRDYVLGEHTAGNLN GREA
Sbjct: 295823 QSTNSQQQKKSGSRGGRISYKLTLAERQRLRDYVLGEHTAGNLNASFFASAVSMSAGREA 296002
Query: 121 DGVSAALRNMDPXXXXXXXXXXXXXXTFFDRNASMFDPVLLRNAGI 166
DGVSAALRNMDP TFFDRNASMFDPVLLRNAGI
Sbjct: 296003 DGVSAALRNMDPGANFANNSMFNMNGTFFDRNASMFDPVLLRNAGI 296140
>ref|XM_001681612.1| Leishmania major hypothetical protein, conserved (LmjF12.0590)
partial mRNA
Length = 5577
Score = 131 bits (330), Expect = 7e-29, Method: Composition-based stats.
Identities = 75/150 (50%), Positives = 87/150 (58%)
Frame = +1
Query: 17 IPVFTPSGLIVDAEAQENNSFLESTTAARSHSDLRARRPRRXXXXXXXXXXXXXXXXRGG 76
+PVFTPSGL+VDA AQEN SFL+STT +SH+DL ARR RR GG
Sbjct: 3208 VPVFTPSGLVVDAGAQENKSFLDSTTGPKSHADLHARR-RRSKLSKSANSERKKNDNGGG 3384
Query: 77 RISYKLTLAERQRLRDYVLGEHTAGNLNXXXXXXXXXXXXGREADGVSAALRNMDPXXXX 136
RI+YKL+ AERQRLR+Y+ +HTA LN +E G SAAL N+D
Sbjct: 3385 RIAYKLSPAERQRLREYMFAQHTASTLNASFFASTTAMAADQETGGPSAALGNVDAGASF 3564
Query: 137 XXXXXXXXXXTFFDRNASMFDPVLLRNAGI 166
TFFDR ASM DP LLRNAGI
Sbjct: 3565 ASHSMFNLNGTFFDRRASMLDPALLRNAGI 3654
>ref|XM_001463952.1| Leishmania infantum JPCM5 hypothetical protein, conserved
(LinJ12.0540) partial mRNA
Length = 5754
Score = 125 bits (315), Expect = 3e-27, Method: Composition-based stats.
Identities = 72/150 (48%), Positives = 85/150 (56%)
Frame = +1
Query: 17 IPVFTPSGLIVDAEAQENNSFLESTTAARSHSDLRARRPRRXXXXXXXXXXXXXXXXRGG 76
+PVFTPSGL+VDA +EN SFL+STT +SH+DL ARR RR GG
Sbjct: 3379 VPVFTPSGLVVDAGVRENRSFLDSTTGPKSHADLHARR-RRSKLSKSANSERKKNDNGGG 3555
Query: 77 RISYKLTLAERQRLRDYVLGEHTAGNLNXXXXXXXXXXXXGREADGVSAALRNMDPXXXX 136
R++YKL AERQ LR+Y+LG+HTA LN +E G SAAL N+D
Sbjct: 3556 RVAYKLRPAERQLLREYMLGQHTASTLNASFFASATAMAADQETGGPSAALGNVDAGASV 3735
Query: 137 XXXXXXXXXXTFFDRNASMFDPVLLRNAGI 166
FFDR ASM DP LLRNAGI
Sbjct: 3736 ASHSIFNLNGIFFDRRASMLDPALLRNAGI 3825
>emb|AM502230.1| Leishmania infantum chromosome 12
Length = 500736
Score = 125 bits (315), Expect = 3e-27, Method: Composition-based stats.
Identities = 72/150 (48%), Positives = 85/150 (56%)
Frame = +1
Query: 17 IPVFTPSGLIVDAEAQENNSFLESTTAARSHSDLRARRPRRXXXXXXXXXXXXXXXXRGG 76
+PVFTPSGL+VDA +EN SFL+STT +SH+DL ARR RR GG
Sbjct: 325921 VPVFTPSGLVVDAGVRENRSFLDSTTGPKSHADLHARR-RRSKLSKSANSERKKNDNGGG 326097
Query: 77 RISYKLTLAERQRLRDYVLGEHTAGNLNXXXXXXXXXXXXGREADGVSAALRNMDPXXXX 136
R++YKL AERQ LR+Y+LG+HTA LN +E G SAAL N+D
Sbjct: 326098 RVAYKLRPAERQLLREYMLGQHTASTLNASFFASATAMAADQETGGPSAALGNVDAGASV 326277
Query: 137 XXXXXXXXXXTFFDRNASMFDPVLLRNAGI 166
FFDR ASM DP LLRNAGI
Sbjct: 326278 ASHSIFNLNGIFFDRRASMLDPALLRNAGI 326367
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.318 0.134 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 242660877
Number of extensions: 1965254
Number of successful extensions: 5559
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 5559
Number of HSP's successfully gapped: 0
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 16 (7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 78 (34.7 bits)
Query= gi|154333778|ref|NC_009304.1|:subseq(295641,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 12
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
ref|XM_001563059.1| Leishmania braziliensis MHOM/BR/75/M2904 hyp... 148 5e-34
emb|AM494949.1| Leishmania braziliensis chromosome 12 148 5e-34
ref|XM_001463952.1| Leishmania infantum JPCM5 hypothetical prote... 80 2e-13
emb|AM502230.1| Leishmania infantum chromosome 12 80 2e-13
ref|XM_001681612.1| Leishmania major hypothetical protein, conse... 71 1e-10
>ref|XM_001563059.1| Leishmania braziliensis MHOM/BR/75/M2904 hypothetical protein,
conserved (LbrM12_V2.0590) partial mRNA
Length = 5469
Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats.
Identities = 118/166 (71%), Positives = 118/166 (71%)
Frame = +2
Query: 1 SPXXXXXXXXXXXXXLYPSSLLLAUXWMPKRRRTTASSRVPRLRGATPTSVLXXXXXXXX 60
SP LYPSSLLLA WMPKRRRTTASSRVPRLRGATPTSVL
Sbjct: 2942 SPGQ*GRRRRQQQGRLYPSSLLLA**WMPKRRRTTASSRVPRLRGATPTSVLAAPGASSP 3121
Query: 61 XXXXXXXXXXXXXXXXXXXXXXLWRSGSVCGTTCWGSIQPATUMHPSSQVPYPCRRVERP 120
LWRSGSVCGTTCWGSIQPAT MHPSSQVPYPCRRVERP
Sbjct: 3122 SRRTRSSRRRAVAEVAASRTS*LWRSGSVCGTTCWGSIQPAT*MHPSSQVPYPCRRVERP 3301
Query: 121 TGCPRRUGTWIPARTLQTTACSIUTAPSSTATRACSILCCCATPGL 166
TGCPRR GTWIPARTLQTTACSI TAPSSTATRACSILCCCATPGL
Sbjct: 3302 TGCPRR*GTWIPARTLQTTACSI*TAPSSTATRACSILCCCATPGL 3439
>emb|AM494949.1| Leishmania braziliensis chromosome 12
Length = 466080
Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats.
Identities = 118/166 (71%), Positives = 118/166 (71%)
Frame = +3
Query: 1 SPXXXXXXXXXXXXXLYPSSLLLAUXWMPKRRRTTASSRVPRLRGATPTSVLXXXXXXXX 60
SP LYPSSLLLA WMPKRRRTTASSRVPRLRGATPTSVL
Sbjct: 295644 SPGQ*GRRRRQQQGRLYPSSLLLA**WMPKRRRTTASSRVPRLRGATPTSVLAAPGASSP 295823
Query: 61 XXXXXXXXXXXXXXXXXXXXXXLWRSGSVCGTTCWGSIQPATUMHPSSQVPYPCRRVERP 120
LWRSGSVCGTTCWGSIQPAT MHPSSQVPYPCRRVERP
Sbjct: 295824 SRRTRSSRRRAVAEVAASRTS*LWRSGSVCGTTCWGSIQPAT*MHPSSQVPYPCRRVERP 296003
Query: 121 TGCPRRUGTWIPARTLQTTACSIUTAPSSTATRACSILCCCATPGL 166
TGCPRR GTWIPARTLQTTACSI TAPSSTATRACSILCCCATPGL
Sbjct: 296004 TGCPRR*GTWIPARTLQTTACSI*TAPSSTATRACSILCCCATPGL 296141
>ref|XM_001463952.1| Leishmania infantum JPCM5 hypothetical protein, conserved
(LinJ12.0540) partial mRNA
Length = 5754
Score = 80.1 bits (196), Expect = 2e-13, Method: Composition-based stats.
Identities = 72/147 (48%), Positives = 77/147 (52%)
Frame = +2
Query: 19 SSLLLAUXWMPKRRRTTASSRVPRLRGATPTSVLXXXXXXXXXXXXXXXXXXXXXXXXXX 78
SSLLL W P+ RT ASS VPR R ATPTS L
Sbjct: 3386 SSLLLVW*WTPECGRTGASSTVPRARRATPTSTLAAAAASCRSRRTQSERRMTTEAAASR 3565
Query: 79 XXXXLWRSGSVCGTTCWGSIQPATUMHPSSQVPYPCRRVERPTGCPRRUGTWIPARTLQT 138
RS + CG+ C GS QPA MH SSQ P RR +RP G RR TW+PAR LQ
Sbjct: 3566 TS-*GRRSVNFCGSICLGSTQPAR*MHRSSQAPPQWRRTKRPAGRLRRWATWMPARALQA 3742
Query: 139 TACSIUTAPSSTATRACSILCCCATPG 165
TA S TA S TA RACSIL CCATPG
Sbjct: 3743 TAFST*TASSLTAERACSILRCCATPG 3823
>emb|AM502230.1| Leishmania infantum chromosome 12
Length = 500736
Score = 80.1 bits (196), Expect = 2e-13, Method: Composition-based stats.
Identities = 72/147 (48%), Positives = 77/147 (52%)
Frame = +2
Query: 19 SSLLLAUXWMPKRRRTTASSRVPRLRGATPTSVLXXXXXXXXXXXXXXXXXXXXXXXXXX 78
SSLLL W P+ RT ASS VPR R ATPTS L
Sbjct: 325928 SSLLLVW*WTPECGRTGASSTVPRARRATPTSTLAAAAASCRSRRTQSERRMTTEAAASR 326107
Query: 79 XXXXLWRSGSVCGTTCWGSIQPATUMHPSSQVPYPCRRVERPTGCPRRUGTWIPARTLQT 138
RS + CG+ C GS QPA MH SSQ P RR +RP G RR TW+PAR LQ
Sbjct: 326108 TS-*GRRSVNFCGSICLGSTQPAR*MHRSSQAPPQWRRTKRPAGRLRRWATWMPARALQA 326284
Query: 139 TACSIUTAPSSTATRACSILCCCATPG 165
TA S TA S TA RACSIL CCATPG
Sbjct: 326285 TAFST*TASSLTAERACSILRCCATPG 326365
>ref|XM_001681612.1| Leishmania major hypothetical protein, conserved (LmjF12.0590)
partial mRNA
Length = 5577
Score = 70.9 bits (172), Expect = 1e-10, Method: Composition-based stats.
Identities = 72/147 (48%), Positives = 78/147 (53%)
Frame = +2
Query: 19 SSLLLAUXWMPKRRRTTASSRVPRLRGATPTSVLXXXXXXXXXXXXXXXXXXXXXXXXXX 78
SSLLL P+RRRT ASS VPR R TPTS L
Sbjct: 3215 SSLLLVW**TPERRRTRASSTVPRARRVTPTSTLAAAAASCRSQRTLSERRTITEAAASR 3394
Query: 79 XXXXLWRSGSVCGTTCWGSIQPATUMHPSSQVPYPCRRVERPTGCPRRUGTWIPARTLQT 138
RS +VCG+ C S QPA MH SSQ P P +R +RP G RR TW+P R LQ
Sbjct: 3395 TS-*ARRSANVCGSICLRSTQPAR*MHRSSQAPPPWQRTKRPAGRLRRWATWMPVRALQA 3571
Query: 139 TACSIUTAPSSTATRACSILCCCATPG 165
TACS APSSTA RACSIL CCA PG
Sbjct: 3572 TACST*MAPSSTAERACSILRCCAMPG 3652
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.330 0.136 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 627893176
Number of extensions: 11716910
Number of successful extensions: 193955
Number of sequences better than 10: 71
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 192976
Number of HSP's successfully gapped: 108
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 15 (7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.0 bits)
S2: 78 (34.7 bits)
Query= gi|154333778|ref|NC_009304.1|:subseq(314539,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 12:[revcomp]
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
emb|AM494949.1| Leishmania braziliensis chromosome 12 178 5e-43
>emb|AM494949.1| Leishmania braziliensis chromosome 12
Length = 466080
Score = 178 bits (451), Expect = 5e-43, Method: Composition-based stats.
Identities = 100/151 (66%), Positives = 100/151 (66%)
Frame = -2
Query: 7 PPAREAEGGARAMQGDTKTPNQPPUSPQLIRSFKWIHVRAGVAVRTVKACRESPIPISFS 66
PPAREAEGGARAMQGDTKTPNQPP SPQLIRSFKWIHVRAGVAVRTVKACRESPIPISFS
Sbjct: 151523 PPAREAEGGARAMQGDTKTPNQPP*SPQLIRSFKWIHVRAGVAVRTVKACRESPIPISFS 151344
Query: 67 RFDFXXXXXXXXXXXXXXXXXQTXXXXXXXXXXXXSXXXXXXXXXXXXXXXXXXXXXSLF 126
RFDF QT S SLF
Sbjct: 151343 RFDFRLLRSCSPRPPRLRIR*QTRGE*RGRERERESAAVEVVQRACVCVCVGGGGGVSLF 151164
Query: 127 GLLRLCFFDDWGFSFKSLVTGWTLYDVTKLS 157
GLLRLCFFDDWGFSFKSLVTGWTLYDVTKLS
Sbjct: 151163 GLLRLCFFDDWGFSFKSLVTGWTLYDVTKLS 151071
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.324 0.138 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 462821807
Number of extensions: 6568908
Number of successful extensions: 53669
Number of sequences better than 10: 2
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 53373
Number of HSP's successfully gapped: 2
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 15 (7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 78 (34.7 bits)
Query= gi|154333778|ref|NC_009304.1|:subseq(314539,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 12:[revcomp]
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
emb|AM494949.1| Leishmania braziliensis chromosome 12 184 8e-45
emb|AL683890.7| Mouse DNA sequence from clone RP23-120N11 on chr... 37 3.0
>emb|AM494949.1| Leishmania braziliensis chromosome 12
Length = 466080
Score = 184 bits (467), Expect = 8e-45, Method: Composition-based stats.
Identities = 99/131 (75%), Positives = 99/131 (75%)
Frame = -3
Query: 25 HRTSLLEAHSSYVRLNGYTCAQVXLCALSRRAESLQSPFLSPALTFAFYAVVAHAHLDCV 84
HRTSLLEAHSSYVRLNGYTCAQV LCALSRRAESLQSPFLSPALTFAFYAVVAHAHLDCV
Sbjct: 151468 HRTSLLEAHSSYVRLNGYTCAQV*LCALSRRAESLQSPFLSPALTFAFYAVVAHAHLDCV 151289
Query: 85 SXXXXXXXXXXXXXXXXXXPLRWCSVRACVCVWGGGEGUAYLGSCAFVSLMIGAXXXXXX 144
S PLRWCSVRACVCVWGGGEG AYLGSCAFVSLMIGA
Sbjct: 151288 SGDRQEGSEEGGRERERARPLRWCSVRACVCVWGGGEG*AYLGSCAFVSLMIGASLLRVS 151109
Query: 145 XXXXXXTTLPN 155
TTLPN
Sbjct: 151108 LRGGLSTTLPN 151076
>emb|AL683890.7| Mouse DNA sequence from clone RP23-120N11 on chromosome 4 Contains two
novel genes, a histone 3 (Hist3) pseudogene, a ribosomal
protein L27 (Rpl27) pseudogene, the Rad23b gene for RAD23b
homolog (S. cerevisiae) and a CpG island, complete sequence
Length = 187392
Score = 36.6 bits (83), Expect = 3.0, Method: Composition-based stats.
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = -2
Query: 106 RWCSVRACVCVWGGGEG 122
RW ++A VCVWGGGEG
Sbjct: 169028 RWVDIQAAVCVWGGGEG 168978
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.332 0.138 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 381137929
Number of extensions: 5037966
Number of successful extensions: 56121
Number of sequences better than 10: 2
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 56074
Number of HSP's successfully gapped: 2
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 15 (7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (19.6 bits)
S2: 78 (34.7 bits)
Query= gi|154333778|ref|NC_009304.1|:subseq(314539,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 12:[revcomp]
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
emb|AM494949.1| Leishmania braziliensis chromosome 12 142 3e-32
>emb|AM494949.1| Leishmania braziliensis chromosome 12
Length = 466080
Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats.
Identities = 88/156 (56%), Positives = 88/156 (56%)
Frame = -1
Query: 1 YPPPSPACERGGGGRESDAGRHKDTEPASLKPTAHTFVXMDTRARRCSCAHCQGVPRVSN 60
YPPPSPACERGGGGRESDAGRHKDTEPASLKPTAHTFV MDTRARRCSCAHCQGVPRVSN
Sbjct: 151539 YPPPSPACERGGGGRESDAGRHKDTEPASLKPTAHTFV*MDTRARRCSCAHCQGVPRVSN 151360
Query: 61 PHFFXXXXXXXXXXXXXXXXXIAYPVTDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
PHFF IAYPVTD
Sbjct: 151359 PHFFLPL*LSPSTQL*PTPTSIAYPVTDKRGVKREGERERERGR*GGAACVRVCVCGGGG 151180
Query: 121 XXXLIWXXXXXXXXXXXXXXXESRYGVDSLRRYQTE 156
LIW ESRYGVDSLRRYQTE
Sbjct: 151179 RGELIWALAPLFL**LGLLF*ESRYGVDSLRRYQTE 151072
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.331 0.143 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 379373879
Number of extensions: 5164458
Number of successful extensions: 59714
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 59531
Number of HSP's successfully gapped: 0
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 15 (7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.0 bits)
S2: 78 (34.7 bits)
Query= gi|154333778|ref|NC_009304.1|:subseq(449301,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 12
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
ref|XM_001563092.1| Leishmania braziliensis MHOM/BR/75/M2904 met... 180 1e-43
emb|AM494949.1| Leishmania braziliensis chromosome 12 180 1e-43
ref|XM_001463980.1| Leishmania infantum JPCM5 metallo-peptidase,... 64 2e-08
emb|AM502230.1| Leishmania infantum chromosome 12 64 2e-08
ref|XM_001681682.1| Leishmania major metallo-peptidase, Clan MA(... 50 3e-04
emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete ... 35 6.3
>ref|XM_001563092.1| Leishmania braziliensis MHOM/BR/75/M2904 metallo-peptidase, Clan
MA(E), Family M1 (LbrM12_V2.0930) partial mRNA
Length = 4050
Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats.
Identities = 105/135 (77%), Positives = 105/135 (77%)
Frame = +3
Query: 16 VVCHRRRRANGSVEHGSUGGHNSDXXXXXXXXXXXHEUGHRRPAWRGNRVADVRFAIAPA 75
VVCHRRRRANGSVEHGS GGHNSD HE GHRRPAWRGNRVADVRFAIAPA
Sbjct: 645 VVCHRRRRANGSVEHGS*GGHNSDIAAIRRAGAAGHE*GHRRPAWRGNRVADVRFAIAPA 824
Query: 76 IASSGILALHTFPNHPPTSHLHCWVSRGXXXXXXXXXXXXXXXVPSGAAAHRTEQQRLFC 135
IASSGILALHTFPNHPPTSHLHCWVSRG VPSGAAAHRTEQQRLFC
Sbjct: 825 IASSGILALHTFPNHPPTSHLHCWVSRGSLHLSRAALATLTSAVPSGAAAHRTEQQRLFC 1004
Query: 136 AULGHXGRRFLCGFL 150
A LGH GRRFLCGFL
Sbjct: 1005A*LGH*GRRFLCGFL 1049
>emb|AM494949.1| Leishmania braziliensis chromosome 12
Length = 466080
Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats.
Identities = 105/135 (77%), Positives = 105/135 (77%)
Frame = +1
Query: 16 VVCHRRRRANGSVEHGSUGGHNSDXXXXXXXXXXXHEUGHRRPAWRGNRVADVRFAIAPA 75
VVCHRRRRANGSVEHGS GGHNSD HE GHRRPAWRGNRVADVRFAIAPA
Sbjct: 449347 VVCHRRRRANGSVEHGS*GGHNSDIAAIRRAGAAGHE*GHRRPAWRGNRVADVRFAIAPA 449526
Query: 76 IASSGILALHTFPNHPPTSHLHCWVSRGXXXXXXXXXXXXXXXVPSGAAAHRTEQQRLFC 135
IASSGILALHTFPNHPPTSHLHCWVSRG VPSGAAAHRTEQQRLFC
Sbjct: 449527 IASSGILALHTFPNHPPTSHLHCWVSRGSLHLSRAALATLTSAVPSGAAAHRTEQQRLFC 449706
Query: 136 AULGHXGRRFLCGFL 150
A LGH GRRFLCGFL
Sbjct: 449707 A*LGH*GRRFLCGFL 449751
>ref|XM_001463980.1| Leishmania infantum JPCM5 metallo-peptidase, Clan MA(E), Family M1
(LinJ12.0830) partial mRNA
Length = 4119
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 54/134 (40%), Positives = 66/134 (49%)
Frame = +3
Query: 17 VCHRRRRANGSVEHGSUGGHNSDXXXXXXXXXXXHEUGHRRPAWRGNRVADVRFAIAPAI 76
VCH RRA+G+VEHGS GGH HE GH++P RG V DVR I A+
Sbjct: 648 VCHCHRRADGAVEHGSGGGHKRGGTPVRRAEATGHERGHQQPPQRGAGVVDVRLRIIAAV 827
Query: 77 ASSGILALHTFPNHPPTSHLHCWVSRGXXXXXXXXXXXXXXXVPSGAAAHRTEQQRLFCA 136
+ ++AL ++ T+H+HC VSR V GA AHR EQ RL A
Sbjct: 828 GA--VVALRAI*DNAATAHVHCGVSRRPLHLSGAALATLRCAVSCGAPAHRGEQWRLLRA 1001
Query: 137 ULGHXGRRFLCGFL 150
H RRF FL
Sbjct: 1002RPSHQSRRFFHEFL 1043
>emb|AM502230.1| Leishmania infantum chromosome 12
Length = 500736
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 54/134 (40%), Positives = 66/134 (49%)
Frame = +3
Query: 17 VCHRRRRANGSVEHGSUGGHNSDXXXXXXXXXXXHEUGHRRPAWRGNRVADVRFAIAPAI 76
VCH RRA+G+VEHGS GGH HE GH++P RG V DVR I A+
Sbjct: 460992 VCHCHRRADGAVEHGSGGGHKRGGTPVRRAEATGHERGHQQPPQRGAGVVDVRLRIIAAV 461171
Query: 77 ASSGILALHTFPNHPPTSHLHCWVSRGXXXXXXXXXXXXXXXVPSGAAAHRTEQQRLFCA 136
+ ++AL ++ T+H+HC VSR V GA AHR EQ RL A
Sbjct: 461172 GA--VVALRAI*DNAATAHVHCGVSRRPLHLSGAALATLRCAVSCGAPAHRGEQWRLLRA 461345
Query: 137 ULGHXGRRFLCGFL 150
H RRF FL
Sbjct: 461346 RPSHQSRRFFHEFL 461387
>ref|XM_001681682.1| Leishmania major metallo-peptidase, Clan MA(E), Family M1
(LmjF12.1250) partial mRNA
Length = 4116
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 54/134 (40%), Positives = 64/134 (47%)
Frame = +3
Query: 17 VCHRRRRANGSVEHGSUGGHNSDXXXXXXXXXXXHEUGHRRPAWRGNRVADVRFAIAPAI 76
VCHR RRA+G VEHG GGHN H GH++P RG VAD R A
Sbjct: 648 VCHRHRRADGVVEHGGGGGHNRGGTPVRRAEATGHG*GHQQPPRRGAGVADGRRRTVAAA 827
Query: 77 ASSGILALHTFPNHPPTSHLHCWVSRGXXXXXXXXXXXXXXXVPSGAAAHRTEQQRLFCA 136
+++ L ++ T+H+HC VSR V GA AHR Q RL CA
Sbjct: 828 SATVALC--ALCDNAATAHMHCGVSRRPLRLSGAALATLRCAVSCGAPAHRGAQWRLLCA 1001
Query: 137 ULGHXGRRFLCGFL 150
L H RRF GFL
Sbjct: 1002RLSHQSRRFFRGFL 1043
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome
Length = 5178466
Score = 35.4 bits (80), Expect = 6.3, Method: Composition-based stats.
Identities = 20/42 (47%), Positives = 24/42 (57%)
Frame = +3
Query: 56 RRPAWRGNRVADVRFAIAPAIASSGILALHTFPNHPPTSHLH 97
R P WRG R A V+ +A AIA+ GILA P+ P LH
Sbjct: 3638199 RHPQWRGGRGARVQHLVAVAIAAEGILAARGVPDPPVDRRLH 3638324
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 10, 2009 6:09 PM
Number of letters in database: 713,659,451
Number of sequences in database: 8,328,840
Lambda K H
0.331 0.141 5.30e-313
Gapped
Lambda K H
0.267 0.0410 5.30e-313
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8328840
Number of Hits to DB: 482361363
Number of extensions: 7173326
Number of successful extensions: 53599
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 53588
Number of HSP's successfully gapped: 0
Length of query: 166
Length of database: 26483463227
Length adjustment: 133
Effective length of query: 33
Effective length of database: 7720085355
Effective search space: 254762816715
Effective search space used: 254762816715
T: 13
A: 40
X1: 15 (7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.0 bits)
S2: 78 (34.7 bits)
Query= gi|154333778|ref|NC_009304.1|:subseq(449301,500) Leishmania
braziliensis MHOM/BR/75/M2904 chromosome 12
(166 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value