Query= SPP00000012_1.0 # Protein # Methionine sulfoxide reductase A
(MsrA) # Homo sapiens # Complete
(235 letters)
Database: genome.fa
35 sequences; 31,379,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|154332491|ref|NC_009299.1| Leishmania braziliensis MHOM/BR/75... 115 3e-26
gi|154335720|ref|NC_009310.1| Leishmania braziliensis MHOM/BR/75... 29 2.4
gi|154343652|ref|NC_009324.1| Leishmania braziliensis MHOM/BR/75... 28 5.7
gi|154342106|ref|NC_009322.1| Leishmania braziliensis MHOM/BR/75... 28 7.0
gi|154331742|ref|NC_009296.1| Leishmania braziliensis MHOM/BR/75... 28 7.1
>gi|154332491|ref|NC_009299.1| Leishmania braziliensis MHOM/BR/75/M2904
chromosome 7
Length = 586128
Score = 115 bits (287), Expect = 3e-26, Method: Composition-based stats.
Identities = 73/185 (39%), Positives = 93/185 (50%), Gaps = 20/185 (10%)
Frame = +3
Query: 65 TQMAVFGMGCFWGAERKFW--VLKGVYSTQVGFAGGYTSNPT-YKEVCSEKTGHAEVVRV 121
T A F GC+WG E F G+ S +VGF GG Y +V TGHAEV+ +
Sbjct: 541620 TARATFAAGCYWGTEHLFTKKFKDGIVSHKVGFMGGVEREGLGYSDVTKGNTGHAEVLDL 541799
Query: 122 VYQPEHMSFEELLKVFWENHDPTQGMRQGNDHGTQYRSAIYPTSAKQMEAALSSKENYQK 181
VY P+ +SFE+LL F+ H+ T RQG D GT YRSAI+ + +Q AA ENY
Sbjct: 541800 VYDPDKVSFEDLLSFFFRMHNSTTLNRQGGDVGTNYRSAIFYYNDEQKTAA----ENYIA 541967
Query: 182 VLS------------EHGFGPITTDIREGQTFYYAEDYHQQYLSKNPNGYCGL-----GG 224
L+ G GP T + + FY A + HQ Y+ K+PNGYC G
Sbjct: 541968 RLNGSDEKLHAAFTKAFGGGPCVTTLEKAGIFYPAHEAHQNYIEKHPNGYCAHRIYF*GS 542147
Query: 225 TGVSC 229
G SC
Sbjct: 542148 LGCSC 542162
>gi|154335720|ref|NC_009310.1| Leishmania braziliensis MHOM/BR/75/M2904
chromosome 18
Length = 708397
Score = 29.3 bits (64), Expect = 2.4, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 187 GFGPITTDIREGQTFYYAEDYHQQYLSKNP 216
GF + D + + Y E+YHQ Y SKNP
Sbjct: 567611 GFEEVNPD----EEYRYTEEYHQLYYSKNP 567688
>gi|154343652|ref|NC_009324.1| Leishmania braziliensis MHOM/BR/75/M2904
chromosome 32
Length = 1579615
Score = 28.1 bits (61), Expect = 5.7, Method: Composition-based stats.
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = +1
Query: 136 VFWENHDPTQGMRQGNDHGTQYRSAIYPTSAKQMEAALSSKENYQKV 182
VFW DP +G+R+ G Q A + +Q A + Y+K+
Sbjct: 544702 VFWLQVDPKEGLRRAQSRGDQKAGADHWRYVEQRAQAEIADHVYKKI 544842
>gi|154342106|ref|NC_009322.1| Leishmania braziliensis MHOM/BR/75/M2904
chromosome 30
Length = 1359875
Score = 27.7 bits (60), Expect = 7.0, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Frame = -3
Query: 191 ITTDIREGQTFYYAEDYHQQYLSKNPN---GYCGLGGT 225
+ T R+ + + A DY+ QY+ PN G+C LG T
Sbjct: 256275 LATMYRKLRQYEAAIDYYNQYVRSRPNASHGHCALGFT 256162
>gi|154331742|ref|NC_009296.1| Leishmania braziliensis MHOM/BR/75/M2904
chromosome 3
Length = 388728
Score = 27.7 bits (60), Expect = 7.1, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 21/46 (45%)
Frame = +2
Query: 6 RRACQLLLLHSLFPVPRMGNSASNIVSPQEALPGRKEQTPVAAKHH 51
+R L HSL P +G + SP+E L + PVA HH
Sbjct: 89528 QRRLNAQLGHSLAPATAVGAEGMSFSSPKERLGPMQPVHPVAVAHH 89665
TBLASTN 2.2.17 [Aug-26-2007]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= SPP00000078_1.0 # Protein # Methionine sulfoxide reductase A
(MsrA) # Mus musculus # Complete
(233 letters)
Database: genome.fa
35 sequences; 31,379,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|154332491|ref|NC_009299.1| Leishmania braziliensis MHOM/BR/75... 115 3e-26
gi|154341365|ref|NC_009321.1| Leishmania braziliensis MHOM/BR/75... 31 0.84
gi|154345382|ref|NC_009326.1| Leishmania braziliensis MHOM/BR/75... 31 0.95
gi|154335720|ref|NC_009310.1| Leishmania braziliensis MHOM/BR/75... 28 4.5
gi|154335377|ref|NC_009309.1| Leishmania braziliensis MHOM/BR/75... 28 5.1
gi|154332708|ref|NC_009300.1| Leishmania braziliensis MHOM/BR/75... 28 5.6
>gi|154332491|ref|NC_009299.1| Leishmania braziliensis MHOM/BR/75/M2904
chromosome 7
Length = 586128
Score = 115 bits (288), Expect = 3e-26, Method: Composition-based stats.
Identities = 70/181 (38%), Positives = 93/181 (51%), Gaps = 16/181 (8%)
Frame = +3
Query: 63 TQMAVFGMGCFWGAERKFW--VLKGVYSTQVGFAGGHTRNPT-YKEVCSEKTGHAEVVRV 119
T A F GC+WG E F G+ S +VGF GG R Y +V TGHAEV+ +
Sbjct: 541620 TARATFAAGCYWGTEHLFTKKFKDGIVSHKVGFMGGVEREGLGYSDVTKGNTGHAEVLDL 541799
Query: 120 VYRPEHISFEELLKVFWENHDPTQGMRQGNDFGTQYRSAVYPTSAVQMEAALR------- 172
VY P+ +SFE+LL F+ H+ T RQG D GT YRSA++ + Q AA
Sbjct: 541800 VYDPDKVSFEDLLSFFFRMHNSTTLNRQGGDVGTNYRSAIFYYNDEQKTAAENYIARLNG 541979
Query: 173 SKEEYQKVLSK-HNFGPITTDIREGQVFYYAEDYHQQYLSKNPDGYCGL-----GGTGVS 226
S E+ +K GP T + + +FY A + HQ Y+ K+P+GYC G G S
Sbjct: 541980 SDEKLHAAFTKAFGGGPCVTTLEKAGIFYPAHEAHQNYIEKHPNGYCAHRIYF*GSLGCS 542159
Query: 227 C 227
C
Sbjct: 542160 C 542162
>gi|154341365|ref|NC_009321.1| Leishmania braziliensis MHOM/BR/75/M2904
chromosome 29
Length = 1190324
Score = 30.8 bits (68), Expect = 0.84, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 30/61 (49%)
Frame = -2
Query: 35 LPGRTEPIPVTAKHHVSGNRTVEPFPEGTQMAVFGMGCFWGAERKFWVLKGVYSTQVGFA 94
LPG P+ ++ ++ S R P G+Q AV GC R+ VL GV S ++ A
Sbjct: 968740 LPGSFSPLSLSMPNNCSSWRGPAPATRGSQGAVHHYGC-----RRCNVLNGVASERLATA 968576
Query: 95 G 95
G
Sbjct: 968575 G 968573
Score = 30.8 bits (68), Expect = 0.84, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 30/61 (49%)
Frame = +3
Query: 35 LPGRTEPIPVTAKHHVSGNRTVEPFPEGTQMAVFGMGCFWGAERKFWVLKGVYSTQVGFA 94
LPG P+ ++ ++ S R P G+Q AV GC R+ VL GV S ++ A
Sbjct: 975702 LPGSFSPLSLSMPNNCSSWRGPAPATRGSQGAVHHYGC-----RRCNVLNGVASERLATA 975866
Query: 95 G 95
G
Sbjct: 975867 G 975869
Score = 27.7 bits (60), Expect = 7.1, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 28/61 (45%)
Frame = +2
Query: 35 LPGRTEPIPVTAKHHVSGNRTVEPFPEGTQMAVFGMGCFWGAERKFWVLKGVYSTQVGFA 94
LPG P+ ++ ++ S R P G Q AV GC R+ VL GV S + A
Sbjct: 978272 LPGSFSPLSLSMPNNCSS*RGPAPATRGGQGAVHHCGC-----RRCNVLDGVASERPATA 978436
Query: 95 G 95
G
Sbjct: 978437 G 978439
>gi|154345382|ref|NC_009326.1| Leishmania braziliensis MHOM/BR/75/M2904
chromosome 34
Length = 2012684
Score = 30.8 bits (68), Expect = 0.95, Method: Composition-based stats.
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = +3
Query: 14 SANPVRRMGDSASKVISAEEALPG 37
SANP RR GD+AS A+ A PG
Sbjct: 1511529 SANPSRRGGDAASGTAGAQSASPG 1511600
>gi|154335720|ref|NC_009310.1| Leishmania braziliensis MHOM/BR/75/M2904
chromosome 18
Length = 708397
Score = 28.5 bits (62), Expect = 4.5, Method: Composition-based stats.
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +2
Query: 192 DIREGQVFYYAEDYHQQYLSKNP 214
++ + + Y E+YHQ Y SKNP
Sbjct: 567620 EVNPDEEYRYTEEYHQLYYSKNP 567688
>gi|154335377|ref|NC_009309.1| Leishmania braziliensis MHOM/BR/75/M2904
chromosome 17
Length = 694732
Score = 28.1 bits (61), Expect = 5.1, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Frame = -2
Query: 13 SSANPVRRMGDSASKVISAEEALPGRT-----EPIPVTAKHHVSGNRTVEPFP 60
S A+ VRR G + ++A A GRT P+ A+ S +EPFP
Sbjct: 354159 SPADAVRRDGGAGGHSVAAGHAAQGRTGTHAASPLSAGARACHSSRGKLEPFP 354001
>gi|154332708|ref|NC_009300.1| Leishmania braziliensis MHOM/BR/75/M2904
chromosome 8
Length = 470112
Score = 28.1 bits (61), Expect = 5.6, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +2
Query: 41 PIPVTAKHHVSGNRTVEPFPEGTQMAVFGMGCFWGAERKFWVL 83
P+PV A+H V+G P G+ + G C W E + W L
Sbjct: 227138 PLPVRARHRVAG-----PPLHGSA*LLCGACCAWECEERRWPL 227251
TBLASTN 2.2.17 [Aug-26-2007]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= SPP00000039_1.0 # Protein # Methionine sulfoxide reductase A
(MsrA) # Drosophila melanogaster # Complete
(246 letters)
Database: genome.fa
35 sequences; 31,379,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|154332491|ref|NC_009299.1| Leishmania braziliensis MHOM/BR/75... 69 3e-12
gi|154336958|ref|NC_009312.1| Leishmania braziliensis MHOM/BR/75... 30 2.4
gi|154335720|ref|NC_009310.1| Leishmania braziliensis MHOM/BR/75... 28 7.1
>gi|154332491|ref|NC_009299.1| Leishmania braziliensis MHOM/BR/75/M2904
chromosome 7
Length = 586128
Score = 68.9 bits (167), Expect = 3e-12, Method: Composition-based stats.
Identities = 60/194 (30%), Positives = 87/194 (44%), Gaps = 29/194 (14%)
Frame = +3
Query: 10 THPELKDLSTVRNEQKELNISPVHDVNVTKATATFGMGCFWGAESLYGAT--RGVLRTTV 67
+HP L+T Q+ H T A ATF GC+WG E L+ G++ V
Sbjct: 541554 SHPLHLSLTTAE*LQR-------HAAMPTTARATFAAGCYWGTEHLFTKKFKDGIVSHKV 541712
Query: 68 GYAGGS-------SDLPTYRKMGDHTEVLEIDYDPTVISFKELLDLFWNNHEYGLTTPIK 120
G+ GG SD+ + H EVL++ YDP +SF++LL F+ H +T +
Sbjct: 541713 GFMGGVEREGLGYSDVT--KGNTGHAEVLDLVYDPDKVSFEDLLSFFFRMHN---STTLN 541877
Query: 121 RQ-------YASLILYHDEEQKQVA--HASKLEEQERR-----------APEIITTEIAS 160
RQ Y S I Y+++EQK A + ++L + + P + T E A
Sbjct: 541878 RQGGDVGTNYRSAIFYYNDEQKTAAENYIARLNGSDEKLHAAFTKAFGGGPCVTTLEKAG 542057
Query: 161 KENFYPAEAYHQKY 174
FYPA HQ Y
Sbjct: 542058 I--FYPAHEAHQNY 542093
>gi|154336958|ref|NC_009312.1| Leishmania braziliensis MHOM/BR/75/M2904
chromosome 20
Length = 1668259
Score = 29.6 bits (65), Expect = 2.4, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = -2
Query: 50 WGAESLYGATRGVLRTTVGYAGGSSDLPTYRKM 82
WGA G +RG LRTT AG LP +R +
Sbjct: 727293 WGARYYEGVSRGALRTTDALAG---RLPAHRSL 727204
>gi|154335720|ref|NC_009310.1| Leishmania braziliensis MHOM/BR/75/M2904
chromosome 18
Length = 708397
Score = 27.7 bits (60), Expect = 7.1, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +2
Query: 188 LSPKLLQTSY-VATKLNGYLAGVGGIEQFKAEAETMGLTPTQRQYCYYHVEQNE 240
L P QT + VAT+ LAGVGG Q + E L P+ +YH + N+
Sbjct: 452561 LMPPTPQTLWHVATRGGSTLAGVGGGRQTSLQDEGKELRPSHGGGGFYHGDYNK 452722