Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= EhSep2_emiliania_huxley; gi|182639182|sp|Q50KB1.2|SEP2_EMIHU
RecName: Full=Protein disulfide-isomerase-like protein EhSep2; Flags:
Precursor # QUERY
(223 letters)
Database: genome.fa
35 sequences; 31,379,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|140256453|ref|NC_009276.1| Leishmania braziliensis MHOM/BR/75... 84 1e-16
gi|154346825|ref|NC_009327.1| Leishmania braziliensis MHOM/BR/75... 69 3e-12
gi|154336958|ref|NC_009312.1| Leishmania braziliensis MHOM/BR/75... 64 7e-11
gi|154339612|ref|NC_009318.1| Leishmania braziliensis MHOM/BR/75... 53 2e-07
gi|154342106|ref|NC_009322.1| Leishmania braziliensis MHOM/BR/75... 37 0.009
gi|154339085|ref|NC_009317.1| Leishmania braziliensis MHOM/BR/75... 33 0.11
gi|154345382|ref|NC_009326.1| Leishmania braziliensis MHOM/BR/75... 33 0.18
gi|154337694|ref|NC_009314.1| Leishmania braziliensis MHOM/BR/75... 28 4.3
>gi|140256453|ref|NC_009276.1| Leishmania braziliensis MHOM/BR/75/M2904
chromosome 6
Length = 526431
Score = 83.6 bits (205), Expect = 1e-16, Method: Composition-based stats.
Identities = 38/106 (35%), Positives = 61/106 (57%), Gaps = 1/106 (0%)
Frame = +3
Query: 17 AGAIELTPDNFDELVLKSGKAAFIKFLAPWUGHCKKMKPDWDSLASTFEDSKKVLIADVD 76
A +EL P NF ++V K F+ F APW GHC MKP W LA + S+ ++IA +D
Sbjct: 433797 AEMVELNPANFHKIVKDPSKNVFVMFYAPWCGHCNNMKPVWLELADNYPISEDIIIARID 433976
Query: 77 CTTGGKPLCEKYGVRGYPTIKYFNPPDEEGED-YKGGRSLDELKKF 121
+ + + +++G+ G+PT+K+F D+ G + Y G R L + +
Sbjct: 433977 -ASAYRGIAKEFGISGFPTLKFFPKRDKSGANQYSGPRELSAFRSY 434111
Score = 58.9 bits (141), Expect = 2e-09, Method: Composition-based stats.
Identities = 34/104 (32%), Positives = 51/104 (49%), Gaps = 2/104 (1%)
Frame = +2
Query: 20 IELTPDNFDELVLKSGKAAFIKFLAPWUGHCKKMKPDWD--SLASTFEDSKKVLIADVDC 77
+ELT D FD V S K F+ + W CK M WD S++ + ++ ++V A
Sbjct: 479162 VELTRDTFDAHVSGSDKYTFVLYCVKWSRQCKTMIRLWDRLSISQSKKELREVFTAAYVD 479341
Query: 78 TTGGKPLCEKYGVRGYPTIKYFNPPDEEGEDYKGGRSLDELKKF 121
L E+ V+G+PT+ ++ P EG +Y G R L L F
Sbjct: 479342 GDKYPDLVERVNVKGFPTMLFYTPLHTEGLEYNGPRELYLLDSF 479473
>gi|154346825|ref|NC_009327.1| Leishmania braziliensis MHOM/BR/75/M2904
chromosome 35
Length = 2686796
Score = 68.6 bits (166), Expect = 3e-12, Method: Composition-based stats.
Identities = 42/110 (38%), Positives = 61/110 (55%)
Frame = -1
Query: 23 TPDNFDELVLKSGKAAFIKFLAPWUGHCKKMKPDWDSLASTFEDSKKVLIADVDCTTGGK 82
T DNFD +V SG +KF APW GHCK + P++ A + +A+VDCTT K
Sbjct: 2670119 TQDNFDNVV--SGDLTLVKFYAPWCGHCKTLAPEFVKAAEML--TGIATLAEVDCTT-EK 2669955
Query: 83 PLCEKYGVRGYPTIKYFNPPDEEGEDYKGGRSLDELKKFAENELGPGCSV 132
L EKY V+G+PT+ F + + Y G R+ D + + ++ +GP V
Sbjct: 2669954 ALAEKYEVKGFPTLYVFR-NGVKVKAYDGPRTADGIASYMKSHVGPSMKV 2669808
Score = 64.7 bits (156), Expect = 5e-11, Method: Composition-based stats.
Identities = 35/85 (41%), Positives = 53/85 (62%)
Frame = -1
Query: 42 FLAPWUGHCKKMKPDWDSLASTFEDSKKVLIADVDCTTGGKPLCEKYGVRGYPTIKYFNP 101
F APW GHC+K+ PD++ +A + S+ V+IA +D TT EK+ V G+PTI YF P
Sbjct: 2669066 FYAPWCGHCQKLHPDYEKMAENLQ-SENVMIAKMDATTNDFDR-EKFQVSGFPTI-YFIP 2668896
Query: 102 PDEEGEDYKGGRSLDELKKFAENEL 126
+ Y+GGRS E+++F + +
Sbjct: 2668895 AGKPPMMYEGGRSAKEMEEFVRSHM 2668821
>gi|154336958|ref|NC_009312.1| Leishmania braziliensis MHOM/BR/75/M2904
chromosome 20
Length = 1668259
Score = 64.3 bits (155), Expect = 7e-11, Method: Composition-based stats.
Identities = 45/158 (28%), Positives = 78/158 (49%), Gaps = 3/158 (1%)
Frame = -3
Query: 14 GASAGAIELTPDNFDELVLKSGKAAFIKFLAPWUGHCKKMKPDWDSLASTFEDSKKVLIA 73
G S+ ELT + + V + K I F APW GHCK+ P+++ A + +V
Sbjct: 718181 GKSSAVTELTSSSLNAFV-NTHKPVVILFYAPWCGHCKQFHPEFERFAQLMKGIIRVGAI 718005
Query: 74 DVDCTTGGKPLCEKYGVRGYPTIKYFNPPDE---EGEDYKGGRSLDELKKFAENELGPGC 130
D D T + +++GVRG+PTIKY+ + +DY+G R+ L+ E+
Sbjct: 718004 DADRNTH---IGQQFGVRGFPTIKYWRSGAKSVSSAQDYQGQRTAAALQSLMIGEIS--- 717843
Query: 131 SVDLMDNCSEEQKGKLKEYIDMAPEKRTEMLETLKKEL 168
S ++ + E+ +K +P+K +L +LK ++
Sbjct: 717842 SSEVTKVTTAEE---IKHAARNSPKKMIGVLLSLKNKV 717738
>gi|154339612|ref|NC_009318.1| Leishmania braziliensis MHOM/BR/75/M2904
chromosome 26
Length = 1008282
Score = 52.8 bits (125), Expect = 2e-07, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 6/119 (5%)
Frame = -3
Query: 15 ASAGAIELTPDNFDELVLKSGKAAFI--KFLAPWUGHCKKMKPDWDSLASTF----EDSK 68
A G ++ +N+ ++V G F+ +F A W GHC+K P ++ E
Sbjct: 181129 AMGGVEDVNSENYYDIV---GHDQFVLLEFYAVWCGHCRKFSPIYEEFGKYIRIRPELQG 180959
Query: 69 KVLIADVDCTTGGKPLCEKYGVRGYPTIKYFNPPDEEGEDYKGGRSLDELKKFAENELG 127
+V++ V+ T + +C +Y + GYPT+ P G ++ R+ + L F E E+
Sbjct: 180958 RVVVGKVNAPTEPR-ICRRYRISGYPTVILVPPNRHVGVEFTDNRNFNGLLDFVEREMA 180785
Score = 47.4 bits (111), Expect = 8e-06, Method: Composition-based stats.
Identities = 31/109 (28%), Positives = 46/109 (42%), Gaps = 2/109 (1%)
Frame = -2
Query: 21 ELTPDNFDELVLKSGKAAFIKFLAPWUGHCKKMKPDWDSLASTFEDSKKVLIADVDCTTG 80
EL NFD ++ +A F+ F PW K + ++ LA F K V+IA +D +
Sbjct: 179294 ELEHINFDSVINDPSRAVFVMFYLPWTPESKNLMLIYNDLAKVFLGDKDVVIARIDVSDV 179115
Query: 81 GKPLCEKYGVRGYPTIKYFNPPDEEGE--DYKGGRSLDELKKFAENELG 127
KY + P++ YF P E Y+ L+ L F G
Sbjct: 179114 SSKYMVKYNILETPSV-YFFPKGANAEPVKYRRRHHLEGLVAFVNKRAG 178971
>gi|154342106|ref|NC_009322.1| Leishmania braziliensis MHOM/BR/75/M2904
chromosome 30
Length = 1359875
Score = 37.4 bits (85), Expect = 0.009, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Frame = +1
Query: 31 VLKSGKAAFIKFLAPWUGHCKKMKPDWDSLASTFEDSKKVLIADVDCTTGGKPLC-EKYG 89
V +S + F A W G C+++KP ++ +A ++ SK + C C +YG
Sbjct: 363412 VQRSDVVTVVDFYADWCGPCQQIKPQFEQMAQYYDPSKVIF---AKCNVDRNRDCASRYG 363582
Query: 90 VRGYPTIKYF 99
V PT F
Sbjct: 363583 VTSIPTFIVF 363612
>gi|154339085|ref|NC_009317.1| Leishmania braziliensis MHOM/BR/75/M2904
chromosome 25
Length = 923860
Score = 33.5 bits (75), Expect = 0.11, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 32/71 (45%)
Frame = -3
Query: 29 ELVLKSGKAAFIKFLAPWUGHCKKMKPDWDSLASTFEDSKKVLIADVDCTTGGKPLCEKY 88
+ +++ K I F A W G CK + P + LAST + DVD T + Y
Sbjct: 201509 QALVRQPKLTVIDFFATWCGPCKSIAPLIEKLAST-KPHVNFAKVDVDRTPD---VVRNY 201342
Query: 89 GVRGYPTIKYF 99
VR PT +F
Sbjct: 201341 PVRAMPTFYFF 201309
>gi|154345382|ref|NC_009326.1| Leishmania braziliensis MHOM/BR/75/M2904
chromosome 34
Length = 2012684
Score = 33.1 bits (74), Expect = 0.18, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 48/112 (42%), Gaps = 9/112 (8%)
Frame = +3
Query: 20 IELTPDNFDELVLKSGKAAFIKFL----APWUGHCKKMKPDWDSLASTFEDSKKV----- 70
+ L NF+ + S A FL +PW HCK + P + + AS D +V
Sbjct: 495576 VVLNNANFEPYLFPSKHATPRAFLVLCYSPWCSHCKALLPQFLN-ASLQLDLMRVPHSTF 495752
Query: 71 LIADVDCTTGGKPLCEKYGVRGYPTIKYFNPPDEEGEDYKGGRSLDELKKFA 122
+ DV T + E + V +PT+ Y D + Y+G + + +F+
Sbjct: 495753 AVVDVQKNTA---VSEYFNVERFPTLLYTTGKDRQWHLYEGSNTQEGFMQFS 495899
>gi|154337694|ref|NC_009314.1| Leishmania braziliensis MHOM/BR/75/M2904
chromosome 22
Length = 657844
Score = 28.5 bits (62), Expect = 4.3, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +2
Query: 162 ETLKKELADAESTHEALLKELQATYKESMDKLEKLKEESAPKIKLLK 208
E ++E DAE A L E + Y+ES +L+ L+E + LL+
Sbjct: 350804 ERTRQEAIDAEKMTSAQLDEYRVRYEESKRQLDLLRERMQSTMSLLE 350944