
genewise output
Score 108.16 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP03             11 SLALLIAAFLAANAGSATNADNEATDYSSHRYKYLEMLKEADLKQMLHE 
                     SLALL+ +  AA   ++        +++   Y YL+ML E DL+QML+E 
                     SLALLLVS--AACCANSAREVQSTVEHNKDPYAYLDMLDEVDLQQMLYE 
LmjF35_01_20050 2418 tcgcccgt  ggttgatgcggctaggcaagctgtcgacggggcccattg 
                     ctcttttc  ccggcaccgatacctaaaaacacatattaatataattaa 
                     ggatcctc  tgttgtggtgggttggccgcgcccccggtgacggagata 


SPP03             60 KGEA---FHHLRSKRELILAVLKLEKREEALRK--ARVTDTVQHEVRVE 
                     K          R K+EL+ AV KLE+RE+A      RVT  +Q +  +  
                     KTHGRVQVSAFRDKKELVAAVRKLEEREDAESSFNERVTAAMQRKAALT 
LmjF35_01_20050 2559 aacgcgcgagtcgaagcggggcacggcggggtatagcgaggaccaggca 
                     acaggtatgctgaaaattcctgataagaacacgtaagtccctagacctc 
                     ggtgagactccccggggttagcgtggcgcggccccgtggggggcgccgg 


SPP03            104 YCSGXGYRRHYEEVAESLLRSLPPELR---EQQKGKKP            
                         +G      +    +  S P   R   E+    K             
                     Q-QNSGENAPSAKAGSRVSSSSPRHHRSVAEESNDIKD            
LmjF35_01_20050 2706 c caaggagctgaggacgttttcccccaggggaagaag            
                     a aaggaaccccacgggtcccccgaaggtcaagaataa            
                     g gcctatcaggattcgggggcggtcacgtggctctgt            


SPP03            139                           IKFVGVVYSVGAFREFIGNILST 
                                               +++VG  Y     R +   + ST 
                               F:K[aag]        VRIVGGTYPTPPARALAAKVCST 
LmjF35_01_20050 2817 AGTAAGGA  Intron 1   AAGAGgcagggatcaccgcgcggagtta 
                      <1-----[2818 : 3096]-1>  tgttggcacccccgctccatgcc 
                                               actgctccccatctcccgggcgc 


SPP03            163 GFLASIAISFFAPFLRGALPPHIAEWIEQHRGMVVGAGFMMNMVASSLL 
                      FLAS+ +++    L   LPP +  +I Q RGM++GAGF++NM+  +L  
                     AFLASLGVALAGQQLV-FLPPTVLNFIAQQRGMLIGAGFLLNMIGGALG 
LmjF35_01_20050 3168 gtcgtcgggcggcccg tcccagcatagcccgatagggttcaaagggcg 
                     cttcctgtctcgaatt ttcccttattcaaggtttgcgtttattggctg 
                     ctgcccttctaaggcg tgccctgctctggccggccttcgctgctctcg 


SPP03            212 QSGAFEVYLNGSLIYSKLETGAVPTAETLADHILRQII            
                     Q+GAFEV L+G LI+SKL+ GAVP    +   +L++ +            
                     QTGAFEVSLDGELIFSKLQAGAVPAVAEIRRIVLQKTL            
LmjF35_01_20050 3312 caggtggatgggcattaccggggcggggaccagccaac            
                     acgctatgtagatttcatacgctcctcatggtttaact            
                     gctccggcgtcacccagagcatggctgaattttggggg            


//
Making a K in phase 1 intron
>LmjF35_01_20050601_V5.2:subseq(507327,6425).pep
SLALLLVSAACCANSAREVQSTVEHNKDPYAYLDMLDEVDLQQMLYEKTHGRVQVSAFRD
KKELVAAVRKLEEREDAESSFNERVTAAMQRKAALTQQNSGENAPSAKAGSRVSSSSPRH
HRSVAEESNDIKDKVRIVGGTYPTPPARALAAKVCSTAFLASLGVALAGQQLVFLPPTVL
NFIAQQRGMLIGAGFLLNMIGGALGQTGAFEVSLDGELIFSKLQAGAVPAVAEIRRIVLQ
KTL
//
>LmjF35_01_20050601_V5.2:subseq(507327,6425).[2418:3425].sp
TCGCTGGCACTTCTCCTCGTTTCCGCTGCGTGTTGTGCGAATTCGGCGCGTGAGGTGCAG
TCTACTGTGGAGCACAACAAGGACCCGTACGCCTACCTCGACATGCTGGATGAGGTAGAC
CTGCAGCAAATGTTATATGAAAAGACGCATGGGCGAGTGCAAGTCAGTGCCTTCCGCGAC
AAGAAGGAGCTGGTTGCTGCAGTGCGCAAGCTTGAGGAGCGCGAGGACGCGGAGTCCAGC
TTCAACGAGCGTGTGACGGCGGCGATGCAGCGCAAGGCCGCCCTGACGCAGCAGAACAGC
GGTGAAAATGCCCCATCGGCGAAAGCTGGTAGCCGGGTGTCGTCGTCGTCCCCGCGGCAT
CACCGAAGCGTGGCTGAGGAGAGCAATGACATTAAGGATAAGGTACGCATTGTGGGCGGT
ACCTACCCCACCCCACCTGCCCGTGCCCTCGCCGCGAAGGTGTGCTCGACCGCCTTTCTG
GCCTCCCTCGGTGTTGCCCTTGCAGGACAGCAGCTCGTGTTTCTGCCCCCCACCGTTCTG
AACTTTATCGCTCAGCAGCGCGGCATGTTGATCGGCGCTGGTTTCTTGCTCAATATGATC
GGTGGCGCTCTCGGGCAGACCGGTGCCTTCGAGGTGAGCTTGGATGGCGAACTCATCTTC
TCAAAGCTACAGGCCGGAGCTGTGCCGGCCGTTGCGGAAATACGTCGTATTGTTCTGCAG
AAGACGCTG
//
LmjF35_01_20050601_V5.2:subseq(507327,6425)	GeneWise	match	2418	3425	114.15	+	.	LmjF35_01_20050601_V5.2:subseq(507327,6425)-genewise-prediction-1
LmjF35_01_20050601_V5.2:subseq(507327,6425)	GeneWise	cds	2418	2817	0.00	+	0	LmjF35_01_20050601_V5.2:subseq(507327,6425)-genewise-prediction-1
LmjF35_01_20050601_V5.2:subseq(507327,6425)	GeneWise	intron	2818	3096	0.00	+	.	LmjF35_01_20050601_V5.2:subseq(507327,6425)-genewise-prediction-1
LmjF35_01_20050601_V5.2:subseq(507327,6425)	GeneWise	cds	3097	3425	0.00	+	2	LmjF35_01_20050601_V5.2:subseq(507327,6425)-genewise-prediction-1
//
