Command line: [/Users/enekovillanuevaverdejo/Desktop/exonerate-1.4.0/src/program/exonerate -m p2g --showtargetgff --exhaustive yes -q /Users/enekovillanuevaverdejo/Desktop/selk_ddi_aa.fa -t /Users/enekovillanuevaverdejo/Desktop/scafold_142.fa]
Hostname: [MBP-Eneko.local]

C4 Alignment:
------------
         Query: sp|Q55EX3|SELK_DICDI Selenoprotein K homolog OS=Dictyostelium discoideum GN=selk PE=3 SV=2
        Target: scaffold_142 [revcomp]
         Model: protein2genome
     Raw score: 191
   Query range: 4 -> 110
  Target range: 60301 -> 59795

     5 : ProThrTyrValSerGlyGlySerValThrGlnThrGlyArgSerLysTrpArgLeuSer :    24
         |||  !  !  !..!||||||..!|||||||||! !   |||!!!|||||||||||||||
         ProTyrIleLysGluGlyGlyGluValThrGlnLys---ArgThrLysTrpArgLeuSer
 60301 : CCATATATTAAAGAAGGCGGAGAGGTTACACAAAAG---AGGACAAAATGGAGACTATCC : 60247

    25 : TyrIleProGluPheIleTrpGlyIleLeuAsnGlnIleThrPhe{Ph}  >>>> Targ :    40
           !:!!||||||.!..!!|||  !:!!|||||||||||||||!:!{!!}           
         IleValProGluMetPheTrpTyrLeuLeuAsnGlnIleThrTyr{Le}++         
 60246 : ATTGTTCCTGAAATGTTTTGGTATCTTTTGAATCAAATTACCTAT{TT}gt......... : 60195

    41 : et Intron 1 >>>>  {e}PheSerThrLeuIleGlyGlyThrValGluProArgArg :    53
          191 bp           {.}!  ||||||:!!  !||||||! !  !  !! !!:!|||
                         ++{u}SerSerThrIleGlyGlyGlyLysLysProGlnLysArg
 60194 : ................ag{A}TCATCAACTATTGGAGGAGGTAAAAAGCCACAAAAGCGT : 59969

    54 : ArgProAsnAsnGlnGlyGlyGlyArgArgLeuAlaGlyPheAspGlyAsnGlyAsnVal :    73
         ! !  !..!  !     !..!.!! !! !!! !:!!|||  !! !|||..!  !:::   
         MetGlyGlyPheGlyProSerSerGlyGlyProSerGlyGlyGlyGlyGlyProSerGly
 59968 : ATGGGTGGTTTTGGTCCATCAAGTGGTGGCCCATCAGGTGGTGGTGGCGGTCCATCAggt : 59909

    74 : ThrGlyGlySerGlyValGlyGlySerGlyProSerLysGlyProAspAsnGlySerAsn :    93
            ||||||...|||   ||||||...|||! !.!!  !..!  !..!..!||||||!..
         GlyGlyGlyGlyGlyGlyGlyGlyGlyGlyArgGlyProSerGlySerGlyGlySerThr
 59908 : ggcggtggcggtggcggtggcggtggcggACGTGGCCCATCAGGTAGTGGTGGTTCAACA : 59849

    94 : AsnArgArgGlyAspMetLysAsnIleLeuAlaCysAsnSerAlaSerGly :   110
         |||||||||||||||||||||||||||||||||||||||:!!|||||||||
         AsnArgArgGlyAspMetLysAsnIleLeuAlaCysAsnAlaAlaSerGly
 59848 : AATAGAAGAGGGGATATGAAGAATATTCTTGCCTGTAACGCAGCTAGTGGT : 59796

vulgar: sp|Q55EX3|SELK_DICDI 4 110 . scaffold_142 60301 59795 - 191 M 12 36 G 1 0 M 22 66 S 0 2 5 0 2 I 0 187 3 0 2 S 1 1 M 70 210
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome 1.4.0
##date 2009-03-06
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
scaffold_142	exonerate:protein2genome	gene	59796	60301	191	-	.	gene_id 1 ; sequence sp|Q55EX3|SELK_DICDI ; gene_orientation +
scaffold_142	exonerate:protein2genome	cds	60198	60301	.	-	.	
scaffold_142	exonerate:protein2genome	exon	60198	60301	.	-	.	insertions 0 ; deletions 1
scaffold_142	exonerate:protein2genome	splice5	60196	60197	.	-	.	intron_id 1 ; splice_site "GT"
scaffold_142	exonerate:protein2genome	intron	60007	60197	.	-	.	intron_id 1
scaffold_142	exonerate:protein2genome	splice3	60007	60008	.	-	.	intron_id 0 ; splice_site "AG"
scaffold_142	exonerate:protein2genome	cds	59796	60006	.	-	.	
scaffold_142	exonerate:protein2genome	exon	59796	60006	.	-	.	insertions 0 ; deletions 0
scaffold_142	exonerate:protein2genome	similarity	59796	60301	191	-	.	alignment_id 1 ; Query sp|Q55EX3|SELK_DICDI ; Align 60302 5 36 ; Align 60266 18 66 ; Align 60006 41 210
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis