Command line: [/Users/enekovillanuevaverdejo/Desktop/exonerate-1.4.0/src/program/exonerate -m p2g --showtargetgff --exhaustive yes -q /Users/enekovillanuevaverdejo/Desktop/selk.fa -t /Users/enekovillanuevaverdejo/Desktop/scafold_142.fa]
Hostname: [MBP-Eneko.local]

C4 Alignment:
------------
         Query: selk_ddi_Ix20
        Target: scaffold_142 [revcomp]
         Model: protein2genome
     Raw score: 234
   Query range: 4 -> 135
  Target range: 60301 -> 28564

     5 : ProThrTyrValSerGlyGlySerValThrGlnThrGlyArgSerLysTrpArgLeuSer :    24
         |||  !  !  !..!||||||..!|||||||||! !   |||!!!|||||||||||||||
         ProTyrIleLysGluGlyGlyGluValThrGlnLys---ArgThrLysTrpArgLeuSer
 60301 : CCATATATTAAAGAAGGCGGAGAGGTTACACAAAAG---AGGACAAAATGGAGACTATCC : 60247

    25 : TyrIleProGluPheIleTrpGlyIleLeuAsnGlnIleThrPhe{Ph}  >>>> Targ :    40
           !:!!||||||.!..!!|||  !:!!|||||||||||||||!:!{!!}           
         IleValProGluMetPheTrpTyrLeuLeuAsnGlnIleThrTyr{Le}++         
 60246 : ATTGTTCCTGAAATGTTTTGGTATCTTTTGAATCAAATTACCTAT{TT}gt......... : 60195

    41 : et Intron 1 >>>>  {e}PheSerThrLeuIleGlyGlyThrValGluProArgArg :    53
          191 bp           {.}!  ||||||:!!  !||||||! !  !  !! !!:!|||
                         ++{u}SerSerThrIleGlyGlyGlyLysLysProGlnLysArg
 60194 : ................ag{A}TCATCAACTATTGGAGGAGGTAAAAAGCCACAAAAGCGT : 59969

    54 : ArgProAsnAsnGlnGlyGlyGlyArgArgLeuAlaGlyPheAspGlyAsnGlyAsnVal :    73
         ! !  !..!  !     !..!.!! !! !!! !:!!|||  !! !|||..!  !:::   
         MetGlyGlyPheGlyProSerSerGlyGlyProSerGlyGlyGlyGlyGlyProSerGly
 59968 : ATGGGTGGTTTTGGTCCATCAAGTGGTGGCCCATCAGGTGGTGGTGGCGGTCCATCAggt : 59909

    74 : ThrGlyGlySerGlyValGlyGlySerGlyProSerLysGlyProAspAsnGlySerAsn :    93
            ||||||...|||   ||||||...|||! !.!!  !..!  !..!..!||||||!..
         GlyGlyGlyGlyGlyGlyGlyGlyGlyGlyArgGlyProSerGlySerGlyGlySerThr
 59908 : ggcggtggcggtggcggtggcggtggcggACGTGGCCCATCAGGTAGTGGTGGTTCAACA : 59849

    94 : AsnArgArgGlyAspMetLysAsnIleLeuAlaCysAsnSerAlaSerGlySerUnkGly :   113
         |||||||||||||||||||||||||||||||||||||||:!!|||||||||      |||
         AsnArgArgGlyAspMetLysAsnIleLeuAlaCysAsnAlaAlaSerGly---***Gly
 59848 : AATAGAAGAGGGGATATGAAGAATATTCTTGCCTGTAACGCAGCTAGTGGT---TGAGGT : 59792

   114 : Pro{Ly}  >>>> Target Intron 2 >>>>  {s}IleIleIleIleIleIleIle :   122
         |||{!!}           31159 bp          {.}|||||||||||||||||||||
         Pro{As}-+                         +-{n}IleIleIleIleIleIleIle
 59791 : CCA{AA}at.........................at{t}attattattattattattatt : 28606

   123 : IleIleIleIleIleIleIleIleIleIleIleIleIle :   135
         |||||||||||||||||||||||||||||||||||||||
         IleIleIleIleIleIleIleIleIleIleIleIleIle
 28605 : attattattattattattattattattattattattatt : 28565

vulgar: selk_ddi_Ix20
 4 135 . scaffold_142 60301 28564 - 234 M 12 36 G 1 0 M 22 66 S 0 2 5 0 2 I 0 187 3 0 2 S 1 1 M 70 210 G 1 0 M 3 9 S 0 2 5 0 2 I 0 31155 3 0 2 S 1 1 M 20 60
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome 1.4.0
##date 2009-03-09
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
scaffold_142	exonerate:protein2genome	gene	28565	60301	234	-	.	gene_id 1 ; sequence selk_ddi_Ix20
 ; gene_orientation +
scaffold_142	exonerate:protein2genome	cds	60198	60301	.	-	.	
scaffold_142	exonerate:protein2genome	exon	60198	60301	.	-	.	insertions 0 ; deletions 1
scaffold_142	exonerate:protein2genome	splice5	60196	60197	.	-	.	intron_id 1 ; splice_site "GT"
scaffold_142	exonerate:protein2genome	intron	60007	60197	.	-	.	intron_id 1
scaffold_142	exonerate:protein2genome	splice3	60007	60008	.	-	.	intron_id 0 ; splice_site "AG"
scaffold_142	exonerate:protein2genome	cds	59785	60006	.	-	.	
scaffold_142	exonerate:protein2genome	exon	59785	60006	.	-	.	insertions 0 ; deletions 1
scaffold_142	exonerate:protein2genome	splice5	59783	59784	.	-	.	intron_id 2 ; splice_site "AT"
scaffold_142	exonerate:protein2genome	intron	28626	59784	.	-	.	intron_id 2
scaffold_142	exonerate:protein2genome	splice3	28626	28627	.	-	.	intron_id 1 ; splice_site "at"
scaffold_142	exonerate:protein2genome	cds	28565	28625	.	-	.	
scaffold_142	exonerate:protein2genome	exon	28565	28625	.	-	.	insertions 0 ; deletions 0
scaffold_142	exonerate:protein2genome	similarity	28565	60301	234	-	.	alignment_id 1 ; Query selk_ddi_Ix20
 ; Align 60302 5 36 ; Align 60266 18 66 ; Align 60006 41 210 ; Align 59796 112 9 ; Align 28625 116 60
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis