Command line: [/Users/enekovillanuevaverdejo/Desktop/exonerate-1.4.0/src/program/exonerate -m p2g --showtargetgff --exhaustive yes -q /Users/enekovillanuevaverdejo/Desktop/msp_ddi_aa.fa -t /Users/enekovillanuevaverdejo/Desktop/scafold_17.fa]
Hostname: [MBP-Eneko.local]

C4 Alignment:
------------
         Query: DDB0304589 |DDB_G0277015 |Protein| gene: msp on chromosome: 2 position 7225040 to 7225867
        Target: scaffold_17 [revcomp]
         Model: protein2genome
     Raw score: 898
   Query range: 4 -> 242
  Target range: 39980 -> 39197

     5 : AsnLeuProLysValAspLeuGlyGluAspCysGluGlyGlyValUnkAlaArgProSer :    24
         |||||||||||||||!!::!!|||!!:||||||||||||||||||   |||||||||!!!
         AsnLeuProLysValGluValGlyAspAspCysGluGlyGlyVal***AlaArgProThr
 39980 : AATTTACCAAAGGTAGAGGTTGGAGATGACTGTGAGGGCGGAGTTTGAGCAAGGCCAACT : 39923

    25 : SerSerSerSerSerIleAsn<->AsnAlaSerAspGluSerThrProLeuIleSerLys :    43
         ||||||:!!||||||||||||   !..!.!.!!|||||||||||||||||||||||||||
         SerSerAlaSerSerIleAsnLysThrValGlyAspGluSerThrProLeuIleSerLys
 39922 : TCATCAGCATCATCAATTAATAAAACAGTTGGTGATGAGTCTACCCCATTAATTTCAAAG : 39863

    44 : ThrAsnAspGluGluLys<->AlaAsnIleGlyIleSerSerThrSerAsnSerProGln :    62
         |||::!||||||||||||     !  !  !..!  !||| !!:!!|||:!!..!||||||
         ThrSerAspGluGluLysAspIleAlaCysSerSerSerProSerSerAspGlnProGln
 39862 : ACATCTGATGAAGAAAAAGATATTGCTTGCTCATCCTCACCATCCTCTGATCAACCACAA : 39803

    63 : GluGluGlnThrLysLysProLeuPheIleSerIleLeuThrLeuLeuIleSerIlePro :    82
         |||||||||!:!||||||||||||.!!|||||||||||||||:!!|||||||||||||||
         GluGluGlnSerLysLysProLeuIleIleSerIleLeuThrValLeuIleSerIlePro
 39802 : GAAGAACAAAGTAAAAAGCCATTAATCATCTCAATTCTTACAGTTTTAATTTCAATTCCA : 39743

    83 : AlaLeuValGlySerUnkCysTrpProValLeuIleAlaSerLeuSerGlyValAlaVal :   102
         |||||||||||||||   |||||||||:!!|||:!!::!|||:!!  !|||:!!||||||
         AlaLeuValGlySer***CysTrpProIleLeuLeuSerSerIleLeuGlyIleAlaVal
 39742 : GCTTTAGTTGGTTCTTGATGTTGGCCTATCCTTCTAAGCAGCATTCTCGGTATTGCTGTT : 39683

   103 : SerAlaGlySerValGluLeuAlaHisSerLeuThrPheAlaIleThrLeuSerIleLeu :   122
         |||!.!!.!||||||  !!!!||||||:!!:!!|||!:!||||||||||||:!!||||||
         SerGlyAlaSerValThrPheAlaHisAlaIleThrTyrAlaIleThrLeuAlaIleLeu
 39682 : TCAGGAGCTTCCGTCACATTTGCCCACGCCATTACTTATGCCATTACATTAGCTATTTTA : 39623

   123 : SerAsnLeuAlaGlnTyrHisPheHisLysCysLysLysArgProSerAspArgGlyHis :   142
         |||||||||||||||||||||!:!|||||||||:!!...||||||!!!!!:!:!||||||
         SerAsnLeuAlaGlnTyrHisTyrHisLysCysGlnSerArgProArgGluLysGlyHis
 39622 : TCCAATTTAGCTCAATACCATTACCACAAATGTCAATCTAGACCAAGAGAAAAAGGCCAT : 39563

   143 : TrpIleLysPheGlyProPheTyrLeuThrAlaIleAlaValProLeuAlaThrPheAsp :   162
         |||  !|||!:!||||||||||||||||||  !:!:||||||||||||||||||||||||
         TrpHisLysTyrGlyProPheTyrLeuThrLeuLeuAlaValProLeuAlaThrPheAsp
 39562 : TGGCACAAATATGGACCATTTTATCTTACTTTATTGGCTGTTCCTTTAGCAACTTTTGAT : 39503

   163 : IleLeuArgHisIleLeuValAspAsnSerIleTrp  >>>> Target Intron 1 > :   175
         |||||||||||||||||||||||||||..!:!!|||            63 bp       
         IleLeuArgHisIleLeuValAspAsnGlnLeuTrp++                      
 39502 : ATTCTAAGACATATTTTAGTAGATAACCAACTTTGGgt...................... : 39462

   176 : >>>  ThrIleHisSerPheIleSerProAlaAlaTyrArgProGlyCysGluAsnGluA :   193
              |||:!!|||||||||:!!|||||||||||||||||||||||||||  !:!!||||
            ++ThrValHisSerPheValSerProAlaAlaTyrArgProGlyCysThrHisGluA
 39461 : ...agACTGTACATTCATTTGTTTCACCAGCAGCATATAGACCAGGTTGCACACACGAAA : 39347

   194 : snIleThrCysLeuSerValMetGlyTrpPheSerAlaIleValPheThrTyrThrGlyT :   213
         |||||! !|||||||||||||||||||||||||||||||||:!!||||||||||||||||
         snIleArgCysLeuSerValMetGlyTrpPheSerAlaIleIlePheThrTyrThrGlyT
 39346 : ATATTAGATGCCTTTCAGTCATGGGTTGGTTTTCAGCAATTATTTTCACATATACAGGTT : 39287

   214 : yrAlaCysLeuLeuValGlyThrIleTrpAlaAlaAspLeuIleProLysIleLysLysV :   233
         |||||  !||||||..!||||||||||||..!|||!!:|||  !  !||||||||||||:
         yrAlaLeuLeuLeuThrGlyThrIleTrpCysAlaGluLeuHisIleLysIleLysLysL
 39286 : ATGCCCTTTTATTAACTGGTACAATTTGGTGTGCTGAACTCCACATAAAGATCAAAAAGT : 39227

   234 : alTrpThrGlnLeuArgProSerLysLys :   242
         !!|||  !||||||||||||!.!||||||
         euTrpGlnGlnLeuArgProLysLysLys
 39226 : TATGGCAACAACTCCGTCCAAAAAAGAAA : 39198

vulgar: DDB0304589 4 242 . scaffold_17 39980 39197 - 898 M 27 81 G 0 3 M 18 54 G 0 3 M 125 375 5 0 2 I 0 59 3 0 2 M 68 204
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome 1.4.0
##date 2009-03-06
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
scaffold_17	exonerate:protein2genome	gene	39198	39980	898	-	.	gene_id 1 ; sequence DDB0304589 ; gene_orientation +
scaffold_17	exonerate:protein2genome	cds	39465	39980	.	-	.	
scaffold_17	exonerate:protein2genome	exon	39465	39980	.	-	.	insertions 6 ; deletions 0
scaffold_17	exonerate:protein2genome	splice5	39463	39464	.	-	.	intron_id 1 ; splice_site "GT"
scaffold_17	exonerate:protein2genome	intron	39402	39464	.	-	.	intron_id 1
scaffold_17	exonerate:protein2genome	splice3	39402	39403	.	-	.	intron_id 0 ; splice_site "AG"
scaffold_17	exonerate:protein2genome	cds	39198	39401	.	-	.	
scaffold_17	exonerate:protein2genome	exon	39198	39401	.	-	.	insertions 0 ; deletions 0
scaffold_17	exonerate:protein2genome	similarity	39198	39980	898	-	.	alignment_id 1 ; Query DDB0304589 ; Align 39981 5 81 ; Align 39897 32 54 ; Align 39840 50 375 ; Align 39402 175 204
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis