TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000040_1.0 # Protein # Selenoprotein 15 (Sel15) #
Drosophila melanogaster # Complete
         (178 letters)

Database: genome.fa 
           5966 sequences; 17,086,925 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAAI01003332.1| Plasmodium berghei whole genome shotgun asse...    26   7.6  

>emb|CAAI01003332.1| Plasmodium berghei whole genome shotgun assembly, contig PB_RP3816,
            whole genome shotgun sequence
          Length = 4805

 Score = 26.2 bits (56), Expect = 7.6,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
 Frame = -3

Query: 107  IKYVRGLDPVVKLLDASGKV---QETLSITKWNTDTVEEFFETHLAKDGAGKNSYS 159
            + Y++ +D +V   +A+ ++   +E   I K N ++   FFET + K+   +N Y+
Sbjct: 3942 LSYIKEVDKIVNKSNATKQIDALREKSHIYKNNKNSFLLFFETLVNKEERHENKYN 3775


  Database: genome.fa
    Posted date:  Jan 16, 2009 12:51 PM
  Number of letters in database: 17,086,925
  Number of sequences in database:  5966
  
Lambda     K      H
   0.324    0.135    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 5966
Number of Hits to DB: 2,850,751
Number of extensions: 31227
Number of successful extensions: 104
Number of sequences better than 10.0: 2
Number of HSP's gapped: 104
Number of HSP's successfully gapped: 2
Length of query: 178
Length of database: 5,695,641
Length adjustment: 89
Effective length of query: 89
Effective length of database: 5,164,667
Effective search space: 459655363
Effective search space used: 459655363
Neighboring words threshold: 13
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 38 (19.2 bits)