BLASTP 2.2.20+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Stephen F. Altschul, John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. RID: VX76MUHP01R Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 8,016,722 sequences; 2,760,090,842 total letters Query= gi|19920352|ref|NP_608329.1| CG12788 [Drosophila melanogaster] Length=292 Score E Sequences producing significant alignments: (Bits) Value ref|XP_675838.1| hypothetical protein [Plasmodium berghei str... 29.3 0.69 ref|XP_679700.1| hypothetical protein [Plasmodium berghei str... 28.5 1.1 ref|XP_679321.1| hypothetical protein [Plasmodium berghei str... 28.1 1.3 ref|XP_673600.1| hypothetical protein [Plasmodium berghei str... 28.1 1.5 ref|XP_679727.1| GTP-binding protein [Plasmodium berghei stra... 27.7 1.7 ref|XP_675869.1| hypothetical protein [Plasmodium berghei str... 27.7 1.8 ref|XP_674901.1| dephospho-CoA kinase [Plasmodium berghei str... 26.9 2.7 gb|AAC28871.1| merozoite surface protein-1 [Plasmodium berghei] 26.9 3.0 gb|AAF13063.1| merozoite surface antigen 1 [Plasmodium berghei] 26.9 3.0 ref|XP_678505.1| merozoite surface protein 1, precursor [Plas... 26.9 3.0 ref|XP_676935.1| hypothetical protein [Plasmodium berghei str... 26.6 3.9 ref|XP_673856.1| hypothetical protein [Plasmodium berghei str... 26.2 4.6 ref|XP_675814.1| hypothetical protein [Plasmodium berghei str... 26.2 5.4 ref|XP_678383.1| hypothetical protein [Plasmodium berghei str... 25.4 8.4 ref|XP_678699.1| GTP-binding protein [Plasmodium berghei stra... 25.4 9.0 ref|XP_678855.1| hypothetical protein [Plasmodium berghei str... 25.4 9.5 ALIGNMENTS >ref|XP_675838.1| hypothetical protein [Plasmodium berghei strain ANKA] emb|CAH95459.1| conserved hypothetical protein [Plasmodium berghei] Length=584 Score = 29.3 bits (64), Expect = 0.69, Method: Compositional matrix adjust. Identities = 9/25 (36%), Positives = 15/25 (60%), Gaps = 0/25 (0%) Query 6 LVALIGLPAAGKSSLCSWLLGQQAA 30 +V IG P GKSS+ + + G++ Sbjct 339 MVGFIGFPNVGKSSIINSIFGEKKV 363 >ref|XP_679700.1| hypothetical protein [Plasmodium berghei strain ANKA] emb|CAI04645.1| conserved hypothetical protein [Plasmodium berghei] Length=560 Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust. Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 0/48 (0%) Query 61 RIFKVIEKLISAIQEDTDWPPQVRRISSSGDYNSGRHLILCDDNFYYR 108 IF+ I KL ++I E+ ++ + ++ SG N HLI+ D +++ Sbjct 11 EIFEKILKLFASISENLNFRLTINKLELSGTNNISNHLIITIDKQFFK 58 >ref|XP_679321.1| hypothetical protein [Plasmodium berghei strain ANKA] emb|CAI00348.1| conserved hypothetical protein [Plasmodium berghei] Length=784 Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust. Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 2/62 (3%) Query 124 IFGQIYMASSLDSCLQANSLRSDATRVPVDVVRQMNERLEVPDTSEAWERNSLTLNGLDM 183 F ++ + L SC N D + +D++ ++N++L D + E N +N + Sbjct 499 FFIDVHNDNELHSCSVGNIYEYDDLKDRIDIINELNKKLN--DKKQNSENNKQNINENET 556 Query 184 DT 185 DT Sbjct 557 DT 558 >ref|XP_673600.1| hypothetical protein [Plasmodium berghei strain ANKA] emb|CAI02319.1| conserved hypothetical protein [Plasmodium berghei] Length=394 Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust. Identities = 11/21 (52%), Positives = 16/21 (76%), Gaps = 0/21 (0%) Query 7 VALIGLPAAGKSSLCSWLLGQ 27 +ALIG P +GKSSL + +L + Sbjct 98 IALIGAPNSGKSSLLNTILNK 118 >ref|XP_679727.1| GTP-binding protein [Plasmodium berghei strain ANKA] emb|CAH98343.1| GTP-binding protein, putative [Plasmodium berghei] Length=506 Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust. Identities = 11/18 (61%), Positives = 14/18 (77%), Gaps = 0/18 (0%) Query 7 VALIGLPAAGKSSLCSWL 24 VA IG+ +GK+SLCS L Sbjct 207 VAFIGIENSGKTSLCSSL 224 >ref|XP_675869.1| hypothetical protein [Plasmodium berghei strain ANKA] emb|CAH97189.1| conserved hypothetical protein [Plasmodium berghei] Length=658 Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust. Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 0/45 (0%) Query 1 MRRICLVALIGLPAAGKSSLCSWLLGQQAALRVRHIVHLCYDDFL 45 M IC +L KS + + + L + H LCYD+F+ Sbjct 92 MYEICTNSLYMKATIFKSKINFYEFDYYSYLLLDHTKQLCYDNFI 136 >ref|XP_674901.1| dephospho-CoA kinase [Plasmodium berghei strain ANKA] emb|CAI00311.1| dephospho-CoA kinase, putative [Plasmodium berghei] Length=274 Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust. Identities = 9/28 (32%), Positives = 17/28 (60%), Gaps = 0/28 (0%) Query 4 ICLVALIGLPAAGKSSLCSWLLGQQAAL 31 +CL+ + G A GKS+ C++L + + Sbjct 72 LCLIGITGGIAVGKSTFCNFLKTKNVVV 99 >gb|AAC28871.1| merozoite surface protein-1 [Plasmodium berghei] Length=1787 Score = 26.9 bits (58), Expect = 3.0, Method: Composition-based stats. Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 4/38 (10%) Query 86 ISSSGDYNSGRHLILCDDNFYYRSMRYKLYQLCRDSGC 123 I S ++N H I NFYY R KL +C ++ C Sbjct 110 IESKEEFNGLMHAI----NFYYDVFRDKLNDMCANNYC 143 >gb|AAF13063.1| merozoite surface antigen 1 [Plasmodium berghei] Length=1791 Score = 26.9 bits (58), Expect = 3.0, Method: Composition-based stats. Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 4/38 (10%) Query 86 ISSSGDYNSGRHLILCDDNFYYRSMRYKLYQLCRDSGC 123 I S ++N H I NFYY R KL +C ++ C Sbjct 110 IESKEEFNGLMHAI----NFYYDVFRDKLNDMCANNYC 143 >ref|XP_678505.1| merozoite surface protein 1, precursor [Plasmodium berghei strain ANKA] emb|CAH95614.1| merozoite surface protein 1, precursor, putative [Plasmodium berghei] Length=1556 Score = 26.9 bits (58), Expect = 3.0, Method: Composition-based stats. Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 4/38 (10%) Query 86 ISSSGDYNSGRHLILCDDNFYYRSMRYKLYQLCRDSGC 123 I S ++N H I NFYY R KL +C ++ C Sbjct 38 IESKEEFNGLMHAI----NFYYDVFRDKLNDMCANNYC 71 >ref|XP_676935.1| hypothetical protein [Plasmodium berghei strain ANKA] emb|CAH95847.1| conserved hypothetical protein [Plasmodium berghei] Length=1217 Score = 26.6 bits (57), Expect = 3.9, Method: Composition-based stats. Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 11/48 (22%) Query 39 LCYDDFLDATPSADLAYKEQRGRIF----------KVIEKLISAIQED 76 + Y + LD P+A ++YKE R +F + ++KL+SAI+E+ Sbjct 113 IIYLENLDVYPNAKISYKE-RINVFYEFLKGSCTSRFLKKLLSAIEEN 159 >ref|XP_673856.1| hypothetical protein [Plasmodium berghei strain ANKA] emb|CAH94928.1| hypothetical protein PB000938.00.0 [Plasmodium berghei] Length=575 Score = 26.2 bits (56), Expect = 4.6, Method: Compositional matrix adjust. Identities = 8/19 (42%), Positives = 15/19 (78%), Gaps = 0/19 (0%) Query 150 VPVDVVRQMNERLEVPDTS 168 +P+DV++ + E +E+ DTS Sbjct 10 IPIDVIKDIYENVEITDTS 28 >ref|XP_675814.1| hypothetical protein [Plasmodium berghei strain ANKA] emb|CAH93567.1| conserved hypothetical protein [Plasmodium berghei] Length=425 Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust. Identities = 9/28 (32%), Positives = 13/28 (46%), Gaps = 0/28 (0%) Query 103 DNFYYRSMRYKLYQLCRDSGCIFGQIYM 130 +NF Y Y + +C CIF Y+ Sbjct 338 ENFSYYYFEYNIKVVCNSENCIFSNNYI 365 >ref|XP_678383.1| hypothetical protein [Plasmodium berghei strain ANKA] emb|CAH96355.1| conserved hypothetical protein [Plasmodium berghei] Length=445 Score = 25.4 bits (54), Expect = 8.4, Method: Compositional matrix adjust. Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 10/42 (23%) Query 93 NSGRHLILCDDNFYYRSMRYKLYQLCRDSGCIFGQIYMASSL 134 N G+H+I+C YY + DS C I+ A SL Sbjct 87 NDGKHIIVCSSGLYYSN----------DSNCSGDDIHNACSL 118 >ref|XP_678699.1| GTP-binding protein [Plasmodium berghei strain ANKA] emb|CAI00015.1| GTP-binding protein, putative [Plasmodium berghei] Length=362 Score = 25.4 bits (54), Expect = 9.0, Method: Compositional matrix adjust. Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 3/22 (13%) Query 3 RICLVALIGLPAAGKSSLCSWL 24 R+CL IG P+ GKS+L S + Sbjct 58 RVCL---IGFPSVGKSTLLSKI 76 >ref|XP_678855.1| hypothetical protein [Plasmodium berghei strain ANKA] emb|CAH98815.1| conserved hypothetical protein [Plasmodium berghei] Length=200 Score = 25.4 bits (54), Expect = 9.5, Method: Compositional matrix adjust. Identities = 8/19 (42%), Positives = 12/19 (63%), Gaps = 0/19 (0%) Query 7 VALIGLPAAGKSSLCSWLL 25 + + G P GKS+LC L+ Sbjct 17 IIITGTPGVGKSTLCEELV 35 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Mar 15, 2009 10:28 PM Number of letters in database: 2,930,347 Number of sequences in database: 11,827 Lambda K H 0.322 0.138 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 11827 Number of Hits to DB: 18280 Number of extensions: 749 Number of successful extensions: 3 Number of sequences better than 100: 1 Number of HSP's better than 100 without gapping: 0 Number of HSP's gapped: 3 Number of HSP's successfully gapped: 1 Length of query: 292 Length of database: 2930347 Length adjustment: 87 Effective length of query: 205 Effective length of database: 1901398 Effective search space: 389786590 Effective search space used: 389786590 T: 11 A: 40 X1: 16 (7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.4 bits) S2: 45 (21.9 bits)