TBLASTN 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= SPP00000012_1.0 # Protein # Methionine sulfoxide reductase A
(MsrA) # Homo sapiens # Complete
         (235 letters)

Database: genome.fa 
           5966 sequences; 17,086,925 total letters

Searching..................................................done

 ***** No hits found ******


  Database: genome.fa
    Posted date:  Jan 16, 2009 12:51 PM
  Number of letters in database: 17,086,925
  Number of sequences in database:  5966
  
Lambda     K      H
   0.317    0.133    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 5966
Number of Hits to DB: 4,124,933
Number of extensions: 49857
Number of successful extensions: 160
Number of sequences better than 10.0: 0
Number of HSP's gapped: 160
Number of HSP's successfully gapped: 0
Length of query: 235
Length of database: 5,695,641
Length adjustment: 92
Effective length of query: 143
Effective length of database: 5,146,769
Effective search space: 735987967
Effective search space used: 735987967
Neighboring words threshold: 13
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 39 (19.6 bits)