genewise output
Score 58.70 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00000007_1.0   40 SMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQUGKTEVNYTQLVDLHA 
                     S+++++ K +DG  + +  Y+  V I+ N AS+ G T+ +  Q   L+  
                     SIYDYNVKSLDGINIPMSTYKNKVLIIFNSASKCGLTKNHINQFNTLYE 
gi|56491127|emb -861 tatgtagattggaaacatataaagtaatatgtatgtaaacaactaattg 
                     ctaaaatactagtatctccaaaatttttacccaggtcaaataatactaa 
                     tatcttgagataatatgaatgcatgttttcaagttaaatttcgttaata 


SPP00000007_1.0   89 RYAECGLR                       ILAFPCNQFGKQEPGSNE 
                     ++   GL                        IL FP  QF  QE   +  
                     KFNHKGLE                       ILGFPTYQFFNQEYKQSC 
gi|56491127|emb -714 atacagtgGTTAGTA  Intron 1   CAGacgtcatcttacgtacat 
                     ataaagta<0-----[690  :  544]-0>ttgtccaattaaaaaagg 
                     gcttaaag                       caattgtgttcaataatt 


SPP00000007_1.0  115 EIKEFAAGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILG      
                     +I +F    N+K+ +F+ I VNG + H L+K++K+       L       
                     DISQFNQEKNIKYHVFAPIEVNGTNTHELFKYLKFNCNEVSYLY      
gi|56491127|emb -489 gaactacgaaaatcgtgcaggagaaacgctatcatataggattt      
                     atgataaaaataaattcctatagcacaattaatatagaatgata      
                     tctattaaacaattactttaataatccattactgtcttgtttat      


SPP00000007_1.0  159                           AIKWNFTKFLIDKNGCVVKRYGP 
                                                I WNF KFLID+ G VVK + P 
                               N:N[aat]        NIGWNFGKFLIDRYGNVVKYFSP 
gi|56491127|emb -357 AGTATATT  Intron 2   TAGATaagtatgattagatgaggatttc 
                      <1-----[356  :  185]-1>  atggatgatttagagattaatcc 
                                               ctagttaataatatatatattga 


SPP00000007_1.0  183 MEEPLVIEK                                         
                        P  +EK                                         
                     KISPSNMEK                                         
gi|56491127|emb -113 aaactaaga                                         
                     atgccataa                                         
                     atcaacgaa                                         


//
Making a N in phase 1 intron
>gi|56491127|emb|CAAI01005912.1|.pep
SIYDYNVKSLDGINIPMSTYKNKVLIIFNSASKCGLTKNHINQFNTLYEKFNHKGLEILG
FPTYQFFNQEYKQSCDISQFNQEKNIKYHVFAPIEVNGTNTHELFKYLKFNCNEVSYLYN
NIGWNFGKFLIDRYGNVVKYFSPKISPSNMEK
//
>gi|56491127|emb|CAAI01005912.1|.[861:85].sp
TCTATATATGACTATAATGTGAAATCGTTAGATGGAATAAATATACCTATGTCAACATAT
AAGAACAAAGTTTTGATTATTTTTAATTCCGCATCAAAGTGTGGTTTAACAAAAAATCAT
ATTAACCAGTTTAATACATTATATGAAAAGTTCAATCATAAAGGATTAGAGATCCTAGGA
TTTCCTACGTATCAGTTTTTTAACCAAGAATATAAACAAAGTTGTGATATCAGTCAATTT
AATCAAGAAAAAAACATAAAATATCATGTATTCGCTCCTATTGAAGTAAATGGAACAAAT
ACCCACGAACTTTTTAAATACCTTAAGTTTAACTGTAATGAGGTTAGTTATTTATATAAT
AACATTGGATGGAATTTTGGAAAATTTTTAATAGATAGATATGGAAATGTAGTTAAATAT
TTTTCGCCAAAAATTAGCCCATCAAACATGGAAAAA
//
gi|56491127|emb|CAAI01005912.1|	GeneWise	match	861	87	58.70	-	.	gi|56491127|emb|CAAI01005912.1|-genewise-prediction-1
gi|56491127|emb|CAAI01005912.1|	GeneWise	cds	861	691	0.00	-	0	gi|56491127|emb|CAAI01005912.1|-genewise-prediction-1
gi|56491127|emb|CAAI01005912.1|	GeneWise	intron	690	544	0.00	-	.	gi|56491127|emb|CAAI01005912.1|-genewise-prediction-1
gi|56491127|emb|CAAI01005912.1|	GeneWise	cds	543	357	0.00	-	0	gi|56491127|emb|CAAI01005912.1|-genewise-prediction-1
gi|56491127|emb|CAAI01005912.1|	GeneWise	intron	356	185	0.00	-	.	gi|56491127|emb|CAAI01005912.1|-genewise-prediction-1
gi|56491127|emb|CAAI01005912.1|	GeneWise	cds	184	87	0.00	-	2	gi|56491127|emb|CAAI01005912.1|-genewise-prediction-1
//