genewise output
Score 170.38 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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ENST00000254730    6 VNVNVGVLGHIDSGKTALARALSTTASTAAFDKQPQSRERGITLDLGFS 
                     +NVN+GVLGH+DSGKT+L R LS   ST A+DK  QS+E+GIT+DLGFS 
                     INVNIGVLGHVDSGKTSLCRCLSEVLSTCALDKHRQSQEKGITIDLGFS 
gi|56500375|emb-6981 aagaaggtgcggtgaaattattaggtaatgtgacacacgagaaagcgtt 
                     tatatgttgatacgacgtgggtgattgcgctaaagagaaagtctatgtc 
                     ttttagaaatattgaatacgtatatgccttgtgtgataagaactttata 


ENST00000254730   55 CFSVPLPARLRSSL                          EFQAAPEAE 
                      F +       ++                            +Q    +E 
                     SFYIKKKKSQTATS          P:G[gga]        NIQNINISE 
gi|56500375|emb-6834 tttaaaaaacagaaGAAAATCA  Intron 1   CAGGAaacaaaatg 
                     ctataaaagacccg <1-----[6791 : 6651]-1>  ataatatca 
                     attaaaaacatatc                          ttatataaa 


ENST00000254730   79 PEPGEPLLQVTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQS 
                           L+Q+ LVDCPGH SLI+ I+ GA+I+D+++LVID+ KG+Q Q+ 
                     KNHENELIQICLVDCPGHHSLIKCIVMGAKIMDMIFLVIDINKGIQKQT 
gi|56500375|emb-6621 aacgagtacattggtcgcctcaatagaggaaagaattgagaaagacaca 
                     aaaaaattatgttagcgaacttagtttgcattattttttataagtaaac 
                     accatgaaaataatttgtttaaacaaggaatgtgttatatatagaaaaa 


ENST00000254730  128 AECLVIGQIACQKLVVVLNKIDLLPEGKRQAAIDKMTKKMQKTLENTKF 
                      ECLV+ Q+    ++++LNKIDL+P  +R   I+ M KK++  +  T + 
                     IECLVLCQFVKSDIIIILNKIDLIPLHERDKKINSMKKKIKDAINRTSL 
gi|56500375|emb-6474 agtcgttctgaagaaaacaaagtactcgagaaaataaaaaaggaaaatc 
                     tagtttgattagatttttaatattctaagaaatactaaataactagcct 
                     agtatacataattttttatattaatatagtaatttgaaatacaataata 


ENST00000254730  177 R                          ---GAPIIPVAAKPGGPEAPET 
                     +                               P + +  K       E  
                     K           -:N[aat]       PNELNPHFNILKK-------EK 
gi|56500375|emb-6327 aAAGTTGTCA  Intron 2   CAGTcagcacctaataa       ga 
                     a  <2-----[6322 : 6215]-2> caatacatattaa       aa 
                     a                          atattttcctaaa       aa 


ENST00000254730  197 EAPQGIPELIELLTSQISIPTRDPS---GPFLMSVDHCFSIKGQGTVMT 
                        + I EL+ELL S I IP R+ +     F +  DH F IKG+G V T 
                     NTRENINELVELLKSVIKIPVRETNPTFEDFYFLYDHSFEIKGKGMVYT 
gi|56500375|emb-6168 aaagaaagcggctaagaaacgagaacatggtttttgcttgaagagagta 
                     acgaataattattagttatctgacacctaatattaaactatagagttac 
                     tagatatataaaagttaataaaaatattattttatctataaggatgata 


ENST00000254730  243 GTILSGSISLGDSVEIPALKVVKKVKSMQMFHMPITSAMQGDRLGICVT 
                     GT++ G I++   + I  L +  K+K +Q F         G+RL + ++ 
                     GTVIKGKITINSDISILPLNIRGKIKDIQSFKKKQKEGTSGNRLSFLIS 
gi|56500375|emb-6021 gagaagaaaaatgatatctaaagaaagacataaacaggatgaattttat 
                     gcttagatctacatcttctatggataatagtaaaaaagccgagtctttc 
                     attaataaaatgttaagtataaaatataattaaaaaataattaaataaa 


ENST00000254730  292 QFDPKLL---ERGLV                                   
                       + K L   ERG++                                   
                     HDNIKNLKKVERGII                                   
gi|56500375|emb-5874 cgaaaataaggagaa                                   
                     aaataataataggtt                                   
                     tcttatgaaaaatat                                   


//
Making a G in phase 1 intron
Making a N in phase 2 intron
>gi|56500375|emb|CAAI01002332.1|.pep
INVNIGVLGHVDSGKTSLCRCLSEVLSTCALDKHRQSQEKGITIDLGFSSFYIKKKKSQT
ATSGNIQNINISEKNHENELIQICLVDCPGHHSLIKCIVMGAKIMDMIFLVIDINKGIQK
QTIECLVLCQFVKSDIIIILNKIDLIPLHERDKKINSMKKKIKDAINRTSLKNPNELNPH
FNILKKEKNTRENINELVELLKSVIKIPVRETNPTFEDFYFLYDHSFEIKGKGMVYTGTV
IKGKITINSDISILPLNIRGKIKDIQSFKKKQKEGTSGNRLSFLISHDNIKNLKKVERGI
I
//
>gi|56500375|emb|CAAI01002332.1|.[6981:5828].sp
ATTAATGTTAATATAGGGGTATTAGGACATGTAGATTCTGGGAAAACAAGTTTATGCAGG
TGTTTAAGTGAAGTTTTGAGCACCTGTGCTTTGGATAAGCATAGGCAAAGTCAAGAAAAG
GGAATAACCATTGATCTTGGATTTTCATCATTTTATATAAAAAAAAAAAAAAGCCAAACT
GCAACTAGCGGAAATATTCAAAATATAAATATATCAGAAAAAAACCACGAAAATGAGTTA
ATACAAATATGTTTAGTAGATTGTCCTGGGCATCATTCTCTAATAAAATGCATAGTAATG
GGGGCAAAAATTATGGATATGATTTTTTTAGTTATAGATATAAATAAAGGGATACAAAAA
CAAACAATAGAGTGTCTAGTTTTATGCCAATTTGTAAAAAGTGATATTATTATTATTCTA
AATAAAATTGATTTAATACCTTTACATGAAAGGGATAAAAAAATTAATTCTATGAAAAAA
AAAATTAAAGACGCAATAAATAGAACATCTCTAAAAAATCCAAATGAACTTAATCCTCAT
TTCAACATTTTAAAAAAAGAAAAAAATACAAGGGAAAATATAAATGAACTTGTAGAACTA
TTAAAGAGTGTTATAAAAATTCCAGTAAGAGAAACAAATCCAACTTTTGAAGATTTTTAT
TTTTTATATGACCATTCATTTGAAATAAAGGGGAAAGGTATGGTATATACAGGAACTGTT
ATAAAAGGTAAAATAACAATAAATTCGGATATTTCAATATTGCCTTTAAATATAAGAGGA
AAAATTAAAGATATACAAAGTTTTAAAAAAAAACAAAAAGAAGGTACATCAGGTAATAGA
TTATCATTTTTAATATCACATGACAATATTAAAAATTTGAAAAAAGTAGAAAGAGGTATA
ATT
//
gi|56500375|emb|CAAI01002332.1|	GeneWise	match	6981	5830	182.36	-	.	gi|56500375|emb|CAAI01002332.1|-genewise-prediction-1
gi|56500375|emb|CAAI01002332.1|	GeneWise	cds	6981	6792	0.00	-	0	gi|56500375|emb|CAAI01002332.1|-genewise-prediction-1
gi|56500375|emb|CAAI01002332.1|	GeneWise	intron	6791	6651	0.00	-	.	gi|56500375|emb|CAAI01002332.1|-genewise-prediction-1
gi|56500375|emb|CAAI01002332.1|	GeneWise	cds	6650	6323	0.00	-	2	gi|56500375|emb|CAAI01002332.1|-genewise-prediction-1
gi|56500375|emb|CAAI01002332.1|	GeneWise	intron	6322	6215	0.00	-	.	gi|56500375|emb|CAAI01002332.1|-genewise-prediction-1
gi|56500375|emb|CAAI01002332.1|	GeneWise	cds	6214	5830	0.00	-	1	gi|56500375|emb|CAAI01002332.1|-genewise-prediction-1
//