TBLASTN 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= SPP00000003_1.0 # Protein # Iodothyronine deiodinase 3 (DI3) # Homo sapiens # Complete (278 letters) Database: genome.fa 5966 sequences; 17,086,925 total letters Searching..................................................done ***** No hits found ****** Database: genome.fa Posted date: Jan 16, 2009 12:51 PM Number of letters in database: 17,086,925 Number of sequences in database: 5966 Lambda K H 0.322 0.139 0.438 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 5966 Number of Hits to DB: 4,774,761 Number of extensions: 59420 Number of successful extensions: 171 Number of sequences better than 10.0: 0 Number of HSP's gapped: 171 Number of HSP's successfully gapped: 0 Length of query: 278 Length of database: 5,695,641 Length adjustment: 94 Effective length of query: 184 Effective length of database: 5,134,837 Effective search space: 944810008 Effective search space used: 944810008 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 40 (20.0 bits)