BLASTN 2.0MP-WashU [04-May-2006] [linux26-x64-I32LPF64 2006-05-10T17:22:28] Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA. All Rights Reserved. Reference: Gish, W. (1996-2006) http://blast.wustl.edu Notice: this program and its default parameter settings are optimized to find nearly identical sequences rapidly. To identify weak protein similarities encoded in nucleic acid, use BLASTX, TBLASTN or TBLASTX. Query= MySeq1 (102 letters) Database: /var/www/Common/prodSiteFilesMirror/webServices/PlasmoDB/release-5.5 /blast//PbergheiGenomics; /var/www/Common/prodSiteFilesMirror/webServices/PlasmoDB/release-5.5 /blast//PchabaudiGenomics; /var/www/Common/prodSiteFilesMirror/webServices/PlasmoDB/release-5.5 /blast//PfalciparumGenomics; /var/www/Common/prodSiteFilesMirror/webServices/PlasmoDB/release-5.5 /blast//PfalciparumMitoGenomics; /var/www/Common/prodSiteFilesMirror/webServices/PlasmoDB/release-5.5 /blast//PfalciparumPlastidGenomics; /var/www/Common/prodSiteFilesMirror/webServices/PlasmoDB/release-5.5 /blast//PgallinaceumGenomics; /var/www/Common/prodSiteFilesMirror/webServices/PlasmoDB/release-5.5 /blast//PknowlesiGenomics; /var/www/Common/prodSiteFilesMirror/webServices/PlasmoDB/release-5.5 /blast//PreichenowiGenomics; /var/www/Common/prodSiteFilesMirror/webServices/PlasmoDB/release-5.5 /blast//PvivaxGenomics; /var/www/Common/prodSiteFilesMirror/webServices/PlasmoDB/release-5.5 /blast//PvivaxMitoGenomics; /var/www/Common/prodSiteFilesMirror/webServices/PlasmoDB/release-5.5 /blast//PyoeliiGenomics 30,769 sequences; 153,144,668 total letters. WARNING: Use of the hspsepSmax parameter should be considered with long database sequences, to improve the biological relevance of the HSP groups that are assembled and to improve the statistical discrimination of these groups from random background. Searching....10....20....30....40....50....60....70....80....90....100% done Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N psu|PB_PH4511 | organism=Plasmodium_berghei_strain_ANKA |... 510 7.0e-18 1 psu|PB_RP0037 | organism=Plasmodium_berghei_strain_ANKA |... 510 8.0e-17 1 tgr|MALPY00909 | organism=Plasmodium_yoelii_yoelii_str._1... 465 8.7e-15 1 psu|PC_RP1580 | organism=Plasmodium_chabaudi_chabaudi | v... 429 2.9e-13 1 psu|Pg_2265551.c000319117.Contig1 | organism=Plasmodium_g... 239 9.8e-05 1 psu|Pg_2265551.c000319121.Contig1 | organism=Plasmodium_g... 189 0.025 1 >psu|PB_PH4511 | organism=Plasmodium_berghei_strain_ANKA | version=2006-02-27 | length=813 Length = 813 Minus Strand HSPs: Score = 510 (82.6 bits), Expect = 7.0e-18, P = 7.0e-18 Identities = 102/102 (100%), Positives = 102/102 (100%), Strand = Minus / Plus Query: 102 TAACTTCTGAGCATTATTCTTCCTGCATCTCCTCTTCATCCATGTTATATGGAATTGGTG 43 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 576 TAACTTCTGAGCATTATTCTTCCTGCATCTCCTCTTCATCCATGTTATATGGAATTGGTG 635 Query: 42 AAAATGGATCATCATTTTGTACATCATGTGCACCACCTTGTT 1 |||||||||||||||||||||||||||||||||||||||||| Sbjct: 636 AAAATGGATCATCATTTTGTACATCATGTGCACCACCTTGTT 677 >psu|PB_RP0037 | organism=Plasmodium_berghei_strain_ANKA | version=2006-02-27 | length=14656 Length = 14,656 Plus Strand HSPs: Score = 510 (82.6 bits), Expect = 8.0e-17, P = 8.0e-17 Identities = 102/102 (100%), Positives = 102/102 (100%), Strand = Plus / Plus Query: 1 AACAAGGTGGTGCACATGATGTACAAAATGATGATCCATTTTCACCAATTCCATATAACA 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7985 AACAAGGTGGTGCACATGATGTACAAAATGATGATCCATTTTCACCAATTCCATATAACA 8044 Query: 61 TGGATGAAGAGGAGATGCAGGAAGAATAATGCTCAGAAGTTA 102 |||||||||||||||||||||||||||||||||||||||||| Sbjct: 8045 TGGATGAAGAGGAGATGCAGGAAGAATAATGCTCAGAAGTTA 8086 >tgr|MALPY00909 | organism=Plasmodium_yoelii_yoelii_str._17XNL | version=2002-09-10 | length=13929 Length = 13,929 Minus Strand HSPs: Score = 465 (75.8 bits), Expect = 8.7e-15, P = 8.7e-15 Identities = 97/102 (95%), Positives = 97/102 (95%), Strand = Minus / Plus Query: 102 TAACTTCTGAGCATTATTCTTCCTGCATCTCCTCTTCATCCATGTTATATGGAATTGGTG 43 |||||| ||| | |||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 2810 TAACTTATGAACGTTATTCTTCCTGCATCTCCTCTTCATCCATGTTATATGGAATGGGTG 2869 Query: 42 AAAATGGATCATCATTTTGTACATCATGTGCACCACCTTGTT 1 ||||||||||||||||||||||||||| |||||||||||||| Sbjct: 2870 AAAATGGATCATCATTTTGTACATCATTTGCACCACCTTGTT 2911 >psu|PC_RP1580 | organism=Plasmodium_chabaudi_chabaudi | version=2006-02-27 | length=2847 Length = 2847 Minus Strand HSPs: Score = 429 (70.4 bits), Expect = 2.9e-13, P = 2.9e-13 Identities = 93/102 (91%), Positives = 93/102 (91%), Strand = Minus / Plus Query: 102 TAACTTCTGAGCATTATTCTTCCTGCATCTCCTCTTCATCCATGTTATATGGAATTGGTG 43 |||||| | ||||||||||||| |||||||||||||||||||| ||||| ||||| || | Sbjct: 2421 TAACTTATTAGCATTATTCTTCTTGCATCTCCTCTTCATCCATATTATACGGAATGGGGG 2480 Query: 42 AAAATGGATCATCATTTTGTACATCATGTGCACCACCTTGTT 1 | ||||||||||||||||||||||||| |||||||||||||| Sbjct: 2481 AGAATGGATCATCATTTTGTACATCATTTGCACCACCTTGTT 2522 >psu|Pg_2265551.c000319117.Contig1 | organism=Plasmodium_gallinaceum | version=2007-01-03 | length=1228 Length = 1228 Plus Strand HSPs: Score = 239 (41.9 bits), Expect = 9.8e-05, P = 9.8e-05 Identities = 67/91 (73%), Positives = 67/91 (73%), Strand = Plus / Plus Query: 1 AACAAGGTGGTGCACATGATGTACAAAATGATGATCCATTTTCACCAATTCCATATAACA 60 | ||| | | | |||| ||||||||||||||||||||||| || || ||||| | Sbjct: 356 AGCAAACTAATAAAAATGAAACTCAAAATGATGATCCATTTTCACCTATGCCTTATAATA 415 Query: 61 TGGATGAAGAGGAGATGCAGGAAGAATAATG 91 | || ||||| || ||| | ||||| | ||| Sbjct: 416 TTGAAGAAGATGAAATGAAAGAAGATTGATG 446 >psu|Pg_2265551.c000319121.Contig1 | organism=Plasmodium_gallinaceum | version=2007-01-03 | length=8285 Length = 8285 Plus Strand HSPs: Score = 189 (34.4 bits), Expect = 0.026, P = 0.025 Identities = 53/72 (73%), Positives = 53/72 (73%), Strand = Plus / Plus Query: 1 AACAAGGTGGTGCACATGATGTACAAAATGATGATCCATTTTCACCAATTCCATATAACA 60 | ||| | | | |||| ||||||||||||||||||||||| || || ||||| | Sbjct: 7202 AGCAAACTAATAAAAATGAAACTCAAAATGATGATCCATTTTCACCTATGCCTTATAATA 7261 Query: 61 TGGATGAAGAGG 72 | || ||||| | Sbjct: 7262 TAGAAGAAGATG 7273 Parameters: -o /var/www/Common/tmp/blast/WuBlastPlugin_12851.out B=50 V=50 E=0.05 filter=seg ctxfactor=2.00 Query ----- As Used ----- ----- Computed ---- Strand MatID Matrix name Lambda K H Lambda K H +1 0 +5,-4 0.192 0.182 0.357 same same same Q=10,R=10 0.104 0.0151 0.0600 n/a n/a n/a -1 0 +5,-4 0.192 0.182 0.357 same same same Q=10,R=10 0.104 0.0151 0.0600 n/a n/a n/a Query Strand MatID Length Eff.Length E S W T X E2 S2 +1 0 102 102 0.048 197 11 n/a 73 0.042 69 134 0.046 81 -1 0 102 102 0.048 197 11 n/a 73 0.042 69 134 0.046 81 Statistics: Database: /var/www/Common/prodSiteFilesMirror/webServices/PlasmoDB/release-5.5/blast//PbergheiGenomics /var/www/Common/prodSiteFilesMirror/webServices/PlasmoDB/release-5.5/blast//PchabaudiGenomics /var/www/Common/prodSiteFilesMirror/webServices/PlasmoDB/release-5.5/blast//PfalciparumGenomics /var/www/Common/prodSiteFilesMirror/webServices/PlasmoDB/release-5.5/blast//PfalciparumMitoGenomics /var/www/Common/prodSiteFilesMirror/webServices/PlasmoDB/release-5.5/blast//PfalciparumPlastidGenomics /var/www/Common/prodSiteFilesMirror/webServices/PlasmoDB/release-5.5/blast//PgallinaceumGenomics /var/www/Common/prodSiteFilesMirror/webServices/PlasmoDB/release-5.5/blast//PknowlesiGenomics /var/www/Common/prodSiteFilesMirror/webServices/PlasmoDB/release-5.5/blast//PreichenowiGenomics /var/www/Common/prodSiteFilesMirror/webServices/PlasmoDB/release-5.5/blast//PvivaxGenomics /var/www/Common/prodSiteFilesMirror/webServices/PlasmoDB/release-5.5/blast//PvivaxMitoGenomics /var/www/Common/prodSiteFilesMirror/webServices/PlasmoDB/release-5.5/blast//PyoeliiGenomics Title: /var/www/Common/prodSiteFilesMirror/webServices/PlasmoDB/release-5.5/blast//PbergheiGenomics /var/www/Common/prodSiteFilesMirror/webServices/PlasmoDB/release-5.5/blast//PchabaudiGenomics /var/www/Common/prodSiteFilesMirror/webServices/PlasmoDB/release-5.5/blast//PfalciparumGenomics /var/www/Common/prodSiteFilesMirror/webServices/PlasmoDB/release-5.5/blast//PfalciparumMitoGenomics /var/www/Common/prodSiteFilesMirror/webServices/PlasmoDB/release-5.5/blast//PfalciparumPlastidGenomics /var/www/Common/prodSiteFilesMirror/webServices/PlasmoDB/release-5.5/blast//PgallinaceumGenomics /var/www/Common/prodSiteFilesMirror/webServices/PlasmoDB/release-5.5/blast//PknowlesiGenomics /var/www/Common/prodSiteFilesMirror/webServices/PlasmoDB/release-5.5/blast//PreichenowiGenomics /var/www/Common/prodSiteFilesMirror/webServices/PlasmoDB/release-5.5/blast//PvivaxGenomics /var/www/Common/prodSiteFilesMirror/webServices/PlasmoDB/release-5.5/blast//PvivaxMitoGenomics /var/www/Common/prodSiteFilesMirror/webServices/PlasmoDB/release-5.5/blast//PyoeliiGenomics Format: VirtualDB # of letters in database: 153,144,668 # of sequences in database: 30,769 # of database sequences satisfying E: 6 No. of states in DFA: 110 (220 KB) Total size of DFA: 229 KB (2054 KB) Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00 No. of threads or processors used: 4 Search cpu time: 0.29u 0.04s 0.33t Elapsed: 00:00:00 Total cpu time: 0.29u 0.16s 0.45t Elapsed: 00:00:00 Start: Fri Mar 13 06:17:47 2009 End: Fri Mar 13 06:17:47 2009 WARNINGS ISSUED: 1