CLUSTAL FORMAT for T-COFFEE Version_5.05 [http://www.tcoffee.org], CPU=3.55 sec, SCORE=39, Nseq=3, Len=690 berghei AACAAGGTGGTGCACATGATGTACAAAATGATGATCCATTTTCACCAATTCCATATAACA yoelii AACAAGGTGGTGCAAATGATGTACAAAATGATGATCCATTTTCACCCATTCCATATAACA chabaudi AACAAGGTGGTGCAAATGATGTACAAAATGATGATCCATTCTCCCCCATTCCGTATAATA ************** ************************* ** ** ***** ***** * berghei TGGATGAAGAGGAGATGCAGGAAGAATAATGCTCAGAAGTTAGTAGAGAGTGTATTTTAT yoelii TGGATGAAGAGGAGATGCAGGAAGAATAACGTTCATAAGTTAGTAGAGAATATATTTTAT chabaudi TGGATGAAGAGGAGATGCAAGAAGAATAATGCTAATAAGTTAGTAGAGAACGTATTTTAT ******************* ********* * * * ************* ******** berghei GACAATAATATATTTGTGGCTTTTTCTTTTTTTATTGGATTAACTGAGTATCCATTGGAA yoelii GACAATAATCTATTTGTGGCTTTTTCTTTTTTTATTGGATTAATTGAGTATCCATTGGAA chabaudi GACAACAATTTATTTGTGGCTTTTTCTTTTTTTATTGGATTGAGT---TATGTATTGGAA ***** *** ******************************* * * *** ******* berghei ATTTGAGCCTGATGGCTTGAAGCTCGATGCTTTGAGTATTTTGTGCATAGCTCGTATAGT yoelii ATTTGAGCCTGATGACTTGAAGCTCGATGCTTTGAGTATTTTATGCATATCTCGTATAGT chabaudi ATTTGAGCCTGATGGCTTGAAGTTCGATTCTTTGAGTATATTGTGCATATCTCGTATCGT ************** ******* ***** ********** ** ****** ******* ** berghei ATGCCTTTTAATACACGTTTCATAATGTTTACATATATGTATATTTTTTTTT-GTTTTAC yoelii TTGCCTTTTAATACACGTTTCATAATATGTACATATATGTATATTTTTTTTTTGTTTTAC chabaudi TTGCCTTTTAATACACGTTTCATAATGTTTACATATGTGTATATTTTTTTTT-GTTTTAC ************************* * ******* *************** ******* berghei ATAAAACTAAACAATAGTTGCCTAGGCACTCACGCATATAAGAAACTATACATATGTATA yoelii ATCAAACCAAACAATAGCTACCTAGGCACTCACGCATATAAGAAACTATACATATGTATA chabaudi ATAAAACTAAATAATAACTACCTAGGCACTCACGCATATGGG----------CATGTATA ** **** *** **** * ******************* * ******* berghei TATACACACTGTGCGCATTGATCTGCCAAGGTTATTTCCTTTTTCTGAAAAACTGAAACA yoelii TATACACGCTGTGTGCATTGATCTGCCAAGGTTATTTCCTTTTTATGAAAAACTG----- chabaudi CATGCACAGTGTGCGCATTGATATGCCAAGGTAATTTCCTTTTTCTGAAAAACTGAAACA ** *** **** ******** ********* *********** ********** berghei AAAAA------------ATGAAAAAAAAATTATTATATCGAATGCAACATTAGAATCACC yoelii ------------------------------------------------------------ chabaudi AAAAAAATGTAAAAAACATGAAAAAAAAATTATTATATCAAATACGACTTCAAAATTGTC berghei ATATGTCAGCTATATATCAACAGTGAGAAATTCGAAAATATTTTGTTTAAGATTTTTTTT yoelii ------------------------------------------------------------ chabaudi ATGCGTCCGCTATATGTTA----------------------------------------- berghei TTAAAGCGTAGATAATAACATAATATTAGCAACGAAATATTTTGCATACTTGTATGTATA yoelii ------------------------------------------------------------ chabaudi ------------------------------------------------------------ berghei TTGCTTTATCTAATAAATAAATATAAAGAGAAGTATATATACAATCATCTATGCTAATTT yoelii ------------------------------------------------------------ chabaudi -----------------------------------------------GCGGTGA------ berghei AGCGATATATGCTCATATTTTTTCTATTTA yoelii ------------------------------ chabaudi -----------------GTAATTCGA----