TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000013_1.0 # Protein # Selenoprotein 15 (Sel15) # Homo
sapiens # Complete
         (124 letters)

Database: genome.fa 
           1185 sequences; 56,660,578 total letters

Searching...................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

scaffold_5                                                             38   0.002
scaffold_1                                                             28   2.4  
scaffold_134                                                           26   9.1  
scaffold_9                                                             26   9.1  

>scaffold_5
          Length = 3000003

 Score = 38.1 bits (87), Expect = 0.002
 Identities = 18/40 (45%), Positives = 22/40 (55%)
 Frame = -1

Query: 65      QLDPDCRGCCQEEAQFETKKLYAGAILEVCGXKLGRFPQV 104
               +L  DC  CC E+        YA AILEVC  KLG +P +
Sbjct: 1868718 ELAADCGACCSEDLSASAS--YASAILEVCE*KLGHYPAI 1868605



 Score = 30.4 bits (67), Expect = 0.48
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +1

Query: 1      MVAMAAGPSGCLVPAFGLRLLLATVLQAVSAFGAEFSSEAC 41
              ++A+ A P GC V AFG  + + T L   + F    S + C
Sbjct: 115966 LIALGAVPMGCAVAAFGASVGIGTSLARRAGFSKTLSLDIC 116088


>scaffold_1
          Length = 3520325

 Score = 28.1 bits (61), Expect = 2.4
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = +3

Query: 1      MVAMAAGPSGCLVPAFGLRLLLATVLQAVSAFGAEF 36
              ++A+AAGP+G LV A  LR L   +++     G EF
Sbjct: 691443 ILALAAGPAGRLVLALVLRPLARLLVRLALILGLEF 691550


>scaffold_134
          Length = 14871

 Score = 26.2 bits (56), Expect = 9.1
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +1

Query: 102  PQVQVCPWFRPCIKAFGRQWEHC 124
            P  Q CPW+R      GR+W  C
Sbjct: 8275 PPTQTCPWWRR-----GRKWRWC 8328


>scaffold_9
          Length = 1602328

 Score = 26.2 bits (56), Expect = 9.1
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -1

Query: 94     CGXKLGRFPQVQVCPWFRP 112
              CG + GR  + Q CPWFRP
Sbjct: 429769 CGPRGGRRRRCQ-CPWFRP 429716


  Database: genome.fa
    Posted date:  Feb 16, 2009  1:41 PM
  Number of letters in database: 56,660,578
  Number of sequences in database:  1185
  
Lambda     K      H
   0.329    0.142    0.479 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,803,635
Number of Sequences: 1185
Number of extensions: 119228
Number of successful extensions: 865
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 466
Number of HSP's gapped (non-prelim): 586
length of query: 124
length of database: 18,886,859
effective HSP length: 91
effective length of query: 33
effective length of database: 18,779,024
effective search space: 619707792
effective search space used: 619707792
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 56 (26.2 bits)
TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000109_1.0 # Protein # Selenoprotein 15 (Sel15) # Mus
musculus # Complete
         (162 letters)

Database: genome.fa 
           1185 sequences; 56,660,578 total letters

Searching...................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

scaffold_5                                                             72   2e-13

>scaffold_5
          Length = 3000003

 Score = 72.4 bits (176), Expect = 2e-13
 Identities = 51/140 (36%), Positives = 70/140 (50%), Gaps = 6/140 (4%)
 Frame = -1

Query: 26      ASALGAEFASEACRELGFXXXXXXXXXXXXGQFNLLPLDPV----CRGCCQEEAQFETKK 81
               A+ALG+  AS  C E GF             +   L  DP     C  CC E+       
Sbjct: 1868826 AAALGSA-ASLDCLEAGFTASLRCSSC---AKLESLVPDPELAADCGACCSEDLSASAS- 1868662

Query: 82      LYAGAILEVCGXKLGRFPQVQAFV--RSDKPKLFRGLQIKYVRGSDPVLKLLDDNGNIAE 139
                YA AILEVC  KLG +P +  F+  RSD    +  L ++Y +G  P L ++DD+G +AE
Sbjct: 1868661 -YASAILEVCE*KLGHYPAIGDFIERRSDT---YGSLDVRYKQGQKPRLLMVDDDGEVAE 1868494

Query: 140     ELSILKWNTDSVEEFLSEKL 159
                + I  WN D+V E+L + L
Sbjct: 1868493 TVPIGGWNEDTVAEYLDDNL 1868434


  Database: genome.fa
    Posted date:  Feb 16, 2009  1:41 PM
  Number of letters in database: 56,660,578
  Number of sequences in database:  1185
  
Lambda     K      H
   0.320    0.137    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,620,131
Number of Sequences: 1185
Number of extensions: 80887
Number of successful extensions: 296
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 240
Number of HSP's gapped (non-prelim): 128
length of query: 162
length of database: 18,886,859
effective HSP length: 96
effective length of query: 66
effective length of database: 18,773,099
effective search space: 1239024534
effective search space used: 1239024534
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)
TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000064_1.0 # Protein # Selenoprotein 15 (Sel15) #
Tetraodon nigroviridis # Complete
         (153 letters)

Database: genome.fa 
           1185 sequences; 56,660,578 total letters

Searching...................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

scaffold_5                                                             83   1e-16
scaffold_33                                                            29   2.5  
scaffold_348                                                           27   7.1  
scaffold_24                                                            27   9.3  
scaffold_3                                                             27   9.3  

>scaffold_5
          Length = 3000003

 Score = 82.8 bits (203), Expect = 1e-16
 Identities = 47/135 (34%), Positives = 73/135 (54%), Gaps = 4/135 (2%)
 Frame = -1

Query: 20      YGAELSSEA---CRELGFSSNLLCTSCDLLGEFSL-AKLQPNCQQCCQQEALMEGRKLYP 75
               + A L S A   C E GF+++L C+SC  L       +L  +C  CC ++  +     Y 
Sbjct: 1868829 FAAALGSAASLDCLEAGFTASLRCSSCAKLESLVPDPELAADCGACCSED--LSASASYA 1868656

Query: 76      GAILEVCGXKLGRFPQVQAFVRSEKPKMFKGLQIKYVRGSDPVLKLLDDEGNIAEELSIL 135
                AILEVC  KLG +P +  F+   +   +  L ++Y +G  P L ++DD+G +AE + I 
Sbjct: 1868655 SAILEVCE*KLGHYPAIGDFIE-RRSDTYGSLDVRYKQGQKPRLLMVDDDGEVAETVPIG 1868479

Query: 136     KWNTDSVEEFLSEKL 150
                WN D+V E+L + L
Sbjct: 1868478 GWNEDTVAEYLDDNL 1868434


>scaffold_33
          Length = 466611

 Score = 28.9 bits (63), Expect = 2.5
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = -3

Query: 39     LCTSCDLLGEFSLAKLQ--PNCQQCCQQEALMEGRKLYPGAILEVCGXKLGR 88
              +C   D+   F L  L+    CQ+ CQ+  L   R+L+ G +  VCG   G+
Sbjct: 142183 VCILLDI*ATFCLKLLRWLSGCQR*CQRGNLTVHRQLHTGKLWTVCGVGSGQ 142028


>scaffold_348
          Length = 8031

 Score = 27.3 bits (59), Expect = 7.1
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -1

Query: 71   RKLYPGAILEVCGXKLGRFPQVQAFVRSEKPKMFKG 106
            R   P  +L     + GR PQV A  RS+KP++  G
Sbjct: 4683 RSARPPGVLRASRLRPGRVPQVAAGRRSQKPRVPPG 4576


>scaffold_24
          Length = 564861

 Score = 26.9 bits (58), Expect = 9.3
 Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
 Frame = +3

Query: 44     DLLGEFSLAKLQPN-CQQCCQQEALMEGRKLYPGAILEVCGXKLGRFPQVQAF-VRSEKP 101
              DL+    L+   PN     C   AL       PGA  ++CG  L RF   + + V +E+ 
Sbjct: 159669 DLVSSDRLSSSSPN*SAGSCPYIALAAENN*GPGARKKICGALLKRFADSEIYAVLTEEA 159848

Query: 102    KMFKGLQIKY 111
              ++  G +  Y
Sbjct: 159849 RVLSGGRFSY 159878


>scaffold_3
          Length = 3001400

 Score = 26.9 bits (58), Expect = 9.3
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -1

Query: 56      PNCQQCCQQEALMEGRKLYPGA 77
               P+C  C Q EAL   R+  PGA
Sbjct: 2537285 PDCLMCLQNEALRTRRRCTPGA 2537220


  Database: genome.fa
    Posted date:  Feb 16, 2009  1:41 PM
  Number of letters in database: 56,660,578
  Number of sequences in database:  1185
  
Lambda     K      H
   0.318    0.136    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,894,715
Number of Sequences: 1185
Number of extensions: 93778
Number of successful extensions: 384
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 291
Number of HSP's gapped (non-prelim): 196
length of query: 153
length of database: 18,886,859
effective HSP length: 95
effective length of query: 58
effective length of database: 18,774,284
effective search space: 1088908472
effective search space used: 1088908472
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)
TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000040_1.0 # Protein # Selenoprotein 15 (Sel15) #
Drosophila melanogaster # Complete
         (178 letters)

Database: genome.fa 
           1185 sequences; 56,660,578 total letters

Searching...................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

scaffold_5                                                             82   3e-16
scaffold_63                                                            27   10.0 

>scaffold_5
          Length = 3000003

 Score = 82.4 bits (202), Expect = 3e-16
 Identities = 50/125 (40%), Positives = 69/125 (55%), Gaps = 1/125 (0%)
 Frame = -1

Query: 25      DCRALGFIKAQLMCSSCEKLDDFGLDT-IKPQCKQCCTLDQQPAAQRTYAKAILEVCTCK 83
               DC   GF  A L CSSC KL+    D  +   C  CC+ D   +A  +YA AILEVC  K
Sbjct: 1868796 DCLEAGFT-ASLRCSSCAKLESLVPDPELAADCGACCSEDLSASA--SYASAILEVCE*K 1868626

Query: 84      FRAYPQIQAFIQSGRPAKFPNLQIKYVRGLDPVVKLLDASGKVQETLSITKWNTDTVEEF 143
                  YP I  FI+  R   + +L ++Y +G  P + ++D  G+V ET+ I  WN DTV E+
Sbjct: 1868625 LGHYPAIGDFIER-RSDTYGSLDVRYKQGQKPRLLMVDDDGEVAETVPIGGWNEDTVAEY 1868449

Query: 144     FETHL 148
                + +L
Sbjct: 1868448 LDDNL 1868434


>scaffold_63
          Length = 129949

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 14/65 (21%), Positives = 26/65 (40%)
 Frame = +3

Query: 38    CSSCEKLDDFGLDTIKPQCKQCCTLDQQPAAQRTYAKAILEVCTCKFRAYPQIQAFIQSG 97
             C SC  +      T  P+C  C T D+  +  +   +A     T ++  +   +A  +S 
Sbjct: 74820 CFSCNSIAPIFATTCAPECAACSTCDRSASNDKALIRARECASTVEYHRFFFSEAIYESR 74999

Query: 98    RPAKF 102
                +F
Sbjct: 75000 ANKRF 75014


  Database: genome.fa
    Posted date:  Feb 16, 2009  1:41 PM
  Number of letters in database: 56,660,578
  Number of sequences in database:  1185
  
Lambda     K      H
   0.324    0.135    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,605,696
Number of Sequences: 1185
Number of extensions: 122584
Number of successful extensions: 637
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 478
Number of HSP's gapped (non-prelim): 343
length of query: 178
length of database: 18,886,859
effective HSP length: 97
effective length of query: 81
effective length of database: 18,771,914
effective search space: 1520525034
effective search space used: 1520525034
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (27.3 bits)
TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000051_1.0 # Protein # Selenoprotein 15 (Sel15) #
Anopheles gambiae # Complete
         (163 letters)

Database: genome.fa 
           1185 sequences; 56,660,578 total letters

Searching...................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

scaffold_5                                                             72   4e-13
scaffold_12                                                            33   0.12 
scaffold_108                                                           29   2.8  
scaffold_33                                                            29   2.8  
scaffold_34                                                            27   8.3  

>scaffold_5
          Length = 3000003

 Score = 71.6 bits (174), Expect = 4e-13
 Identities = 38/99 (38%), Positives = 55/99 (55%)
 Frame = -1

Query: 51      ELKEHCLECCQKDTEADSKLKVYPAAVLEVCTCKFGAYPQIQAFIKSDRPAKFPNLTIKY 110
               EL   C  CC +D  A +    Y +A+LEVC  K G YP I  FI+  R   + +L ++Y
Sbjct: 1868718 ELAADCGACCSEDLSASAS---YASAILEVCE*KLGHYPAIGDFIER-RSDTYGSLDVRY 1868551

Query: 111     VRGLDPIVKLMDEQGNVKETLSINKWNTDTVQEFFETRL 149
                +G  P + ++D+ G V ET+ I  WN DTV E+ +  L
Sbjct: 1868550 KQGQKPRLLMVDDDGEVAETVPIGGWNEDTVAEYLDDNL 1868434


>scaffold_12
          Length = 1412611

 Score = 33.5 bits (75), Expect = 0.12
 Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
 Frame = +3

Query: 78      LEVCTC-KFGAYPQIQAFIKSDRPAK-FPNLTIKYVRGLDPIVKLMDEQGNVKETLSINK 135
               +E C+  K    P+++ F+K    A  +  L I YVRG  P + +MD    V E + +  
Sbjct: 1114794 IETCSA*KLNKLPEVKRFVKESGHADTYEGLEIDYVRGKPPTLIMMDGDAEV-ERVDLAP 1114970

Query: 136     WNTDTVQEFFETR 148
               ++TD +    + +
Sbjct: 1114971 YSTDELHALMQEK 1115009


>scaffold_108
          Length = 21070

 Score = 28.9 bits (63), Expect = 2.8
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = -3

Query: 60    CQKDTEADSKLKVYPAAVLEVCTCKFGAYPQIQAFIKSDRPAK 102
             CQ  T  D ++   PA   E+C   F +   ++AF +   P +
Sbjct: 12116 CQSPTRGDRRMPSAPAPATELCVASFNSLLPVRAFRRWMEPRR 11988


>scaffold_33
          Length = 466611

 Score = 28.9 bits (63), Expect = 2.8
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = -3

Query: 60     CQKDTEADSKLKVYPAAVLEVCTCKFGAYPQIQAFIKSDRPAK 102
              CQ  T  D ++   PA   E+C   F +   ++AF +   P +
Sbjct: 118876 CQSPTRGDRRMPSAPAPATELCVASFNSLLPVRAFRRWMEPRR 118748


>scaffold_34
          Length = 430012

 Score = 27.3 bits (59), Expect = 8.3
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = -3

Query: 117    IVKLMDEQGNVKETLSINKWNTDTVQEFFETR 148
              +V+++D+Q     T+ ++KW   T+QE  ETR
Sbjct: 294371 LVRVVDKQ---PATVKVDKWRAPTLQEEMETR 294285


  Database: genome.fa
    Posted date:  Feb 16, 2009  1:41 PM
  Number of letters in database: 56,660,578
  Number of sequences in database:  1185
  
Lambda     K      H
   0.322    0.138    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,137,836
Number of Sequences: 1185
Number of extensions: 67726
Number of successful extensions: 228
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 157
Number of HSP's gapped (non-prelim): 119
length of query: 163
length of database: 18,886,859
effective HSP length: 96
effective length of query: 67
effective length of database: 18,773,099
effective search space: 1257797633
effective search space used: 1257797633
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)
TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000057_1.0 # Protein # Selenoprotein 15 (Sel15) #
Caenorhabditis elegans # Complete
         (152 letters)

Database: genome.fa 
           1185 sequences; 56,660,578 total letters

Searching...................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

scaffold_5                                                             50   1e-06
scaffold_304                                                           29   1.8  
scaffold_41                                                            29   2.4  

>scaffold_5
          Length = 3000003

 Score = 49.7 bits (117), Expect = 1e-06
 Identities = 32/122 (26%), Positives = 54/122 (44%), Gaps = 1/122 (0%)
 Frame = -1

Query: 28      ECKAAGFNPETLKCGLCERLSDYHLET-LLTDCLQCCIKEEEFKHEKYPTAILEVCECNL 86
               +C  AGF   +L+C  C +L     +  L  DC  CC  E+      Y +AILEVCE  L
Sbjct: 1868796 DCLEAGFTA-SLRCSSCAKLESLVPDPELAADCGACC-SEDLSASASYASAILEVCE*KL 1868623

Query: 87      ARFPQVQAFVHKDMARQFXXXXXXXXXXXXXPQVALKDADFKTKEVLSVEKWDTDTLIDF 146
                 +P +  F+ +                   P++ + D D +  E + +  W+ DT+ ++
Sbjct: 1868622 GHYPAIGDFIER--RSDTYGSLDVRYKQGQKPRLLMVDDDGEVAETVPIGGWNEDTVAEY 1868449

Query: 147     FN 148
                +
Sbjct: 1868448 LD 1868443


>scaffold_304
          Length = 8744

 Score = 29.3 bits (64), Expect = 1.8
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +2

Query: 50   YHLETLLTDCLQCCIKEEEFKH--EKYPTAILEVCECNLARFPQVQA 94
            YHLETL+T  L+C   EE  +    K    IL +   NL  F ++ A
Sbjct: 4718 YHLETLMTRGLRCTPFEEVSRERLSKAVVVILAIRPSNLEHFARIAA 4858


>scaffold_41
          Length = 407180

 Score = 28.9 bits (63), Expect = 2.4
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = +1

Query: 32    AGFNPETLKCGLCERLSDYHLETLLTDCLQCCIKEEEFKHEKYPTAILEVCEC 84
             AG     ++     R     +ETL+TD L+CC      + + Y   +LE  EC
Sbjct: 95737 AGLLSSVMRAAKPNRSCASSVETLVTDILRCC--GARLEAQCYANRVLETIEC 95889


  Database: genome.fa
    Posted date:  Feb 16, 2009  1:41 PM
  Number of letters in database: 56,660,578
  Number of sequences in database:  1185
  
Lambda     K      H
   0.324    0.138    0.440 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,026,452
Number of Sequences: 1185
Number of extensions: 79257
Number of successful extensions: 364
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 291
Number of HSP's gapped (non-prelim): 170
length of query: 152
length of database: 18,886,859
effective HSP length: 95
effective length of query: 57
effective length of database: 18,774,284
effective search space: 1070134188
effective search space used: 1070134188
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.9 bits)
