TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000034_1.0 # Protein # Thioredoxin reductase 1 (TR1) #
Homo sapiens # Complete
         (499 letters)

Database: genome.fa 
           1185 sequences; 56,660,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

scaffold_11                                                           435   e-122
scaffold_8                                                            242   8e-64
scaffold_41                                                           212   7e-55
scaffold_9                                                            107   3e-23
scaffold_3                                                             90   7e-18
scaffold_6                                                             46   1e-04
scaffold_5                                                             45   2e-04
scaffold_10                                                            44   4e-04
scaffold_16                                                            40   0.007
scaffold_12                                                            32   2.1  

>scaffold_11
          Length = 1405779

 Score =  435 bits (1118), Expect = e-122,   Method: Composition-based stats.
 Identities = 229/461 (49%), Positives = 299/461 (64%), Gaps = 7/461 (1%)
 Frame = -3

Query: 38     VMVLDFVTPTPLGTRWGLGGTCVNVGCIPKKLMHQAALLGQALQD-SRNYGWKVEETVKH 96
              V VLDFV P+P G+ WGLGGTCVNVGCIPKKLMH A+++G+ L+D +  +GWK      H
Sbjct: 787909 VAVLDFVKPSPAGSTWGLGGTCVNVGCIPKKLMHTASIIGETLKDDAAAFGWKDAAAGAH 787730

Query: 97     DWDRMIEAVQNHIGSLNWGYRVALREKKVVYENAYGQFIGPHRIKATNNKGKEKIYSAER 156
              DW+ M   VQ+HI SLN+ YRVALRE  + Y N  G+F   + I  T+ KG +   +A R
Sbjct: 787729 DWESMKSTVQDHIKSLNFKYRVALREAGITYLNRLGEFEDKNTISLTDKKGNKTSVTAAR 787550

Query: 157    FLIATGERPRYLGIPGDKEYCISSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDV 216
              F++A G RP  LG PG  E+ I SDDLFSLP  PG+ L VG  Y+ALEC GF AG+G   
Sbjct: 787549 FIVAVGGRPNKLGCPGG-EHAIDSDDLFSLPKAPGRVLCVGGGYIALECGGFTAGMGYPT 787373

Query: 217    TVMVRSILLRGFDQDMANKIGEHMEEHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNS 276
              T MVRSILLRGFD++   KI  H++ HG++      P K+E+ +A T G L V       
Sbjct: 787372 TCMVRSILLRGFDRECVGKIEAHIKHHGVQLQVGVTPAKIEK-DAAT-GVLTVTDSGGGV 787199

Query: 277    EEIIEGEYNTVMLAIGRDACTRKIGLETV---GVKINEKTGKIPVTDEEQTNVPYIYAIG 333
               E     Y+TV++A GR A T  +G++ V      +N KT K+   DE+    P++YAIG
Sbjct: 787198 HE-----YDTVLVATGRYADTAALGIDNVPGASANVNAKTKKLECVDEQLPGAPHVYAIG 787034

Query: 334    DILEDKVELTPVAIQAGRLLAQRLYAGSTVKCDYENVPTTVFTPLEYGACGLSEEKAVEK 393
              D++E + ELTPVAI+AG  LA+RL+ G T   DYE V TT+FTPLEYG  GLSE+ A  +
Sbjct: 787033 DVVEGRPELTPVAIEAGLRLARRLFGGKTEPMDYECVATTIFTPLEYGTIGLSEDDAKAQ 786854

Query: 394    FGEENIEVYHSYFWPLEWTIP---SRDNNKCYAKIICNTKDNERVVGFHVLGPNAGEVTQ 450
               GE N+E Y S F PLE+ +    S   + C+AK++ + K   +VVGFH LGPNAGE+TQ
Sbjct: 786853 LGECNVESYISEFAPLEYALSETRSERGDGCFAKLVVD-KSTGKVVGFHYLGPNAGEITQ 786677

Query: 451    GFAAALKCGLTKKQLDSTIGIHPVCAEVFTTLSVTKRSGAS 491
              GF+ A++ G T     ST+GIHP  AE FT+++VTK SG S
Sbjct: 786676 GFSIAMRKGATYADFISTVGIHPTVAEEFTSMTVTKSSGES 786554


>scaffold_8
          Length = 1961717

 Score =  242 bits (618), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 162/441 (36%), Positives = 233/441 (52%), Gaps = 9/441 (2%)
 Frame = -2

Query: 52      RWGLGGTCVNVGCIPKKLMHQAALLGQALQDSRNYGWKVEETVKHDWDRMIEAVQNHIGS 111
               R  LGGTCVNVGC+PKK+M  AA + + L D+  Y +   E VK DW ++  A  N++  
Sbjct: 1269193 RGALGGTCVNVGCVPKKVMFNAAHIMECLHDAPLYQYSGAEDVKLDWGKLKTARDNYVVR 1269014

Query: 112     LNWGYRVALREKKVVYENAYGQFIGPHRIKATNNKGKEKIYSAERFLIATGERPRY-LGI 170
               LN  Y   L    +        F     +      G E  Y+A+  L+A G  P   L +
Sbjct: 1269013 LNGIYGRGLDGADITTLTGLASFGDDGEVMV----GGEA-YTADHVLVAVGGVPSLPLEL 1268849

Query: 171     PGDKEYCISSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVR-SILLRGFD 229
                G  E+ I+SD  F L   P   LVVGA Y+A+E AG L  +G D T+ VR    LR FD
Sbjct: 1268848 EGG-EHTITSDGFFELEAMPESCLVVGAGYIAVEMAGILNALGCDTTLAVRGDKALRAFD 1268672

Query: 230     QDMANKIGEHMEEHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVML 289
               + ++  +   M+  G+K        KVE ++       + V  +T+   +  G ++ V++
Sbjct: 1268671 ELLSTTLDAEMKRAGMKIATGTTLAKVELVDG------KKVVTTTDGATL--GPFDEVLM 1268516

Query: 290     AIGRDACTRKIGLETVGVKINEKTGKIPVTDEEQTNVPY-IYAIGDILEDKVELTPVAIQ 348
               A+GR      + LE  GV +N++ G + V + ++T   + +YA+GD+    +ELTP+AI 
Sbjct: 1268515 AVGRKPLVEPLKLENAGVDLNDE-GYVAVDEYQRTTSEHNVYALGDVC-GAIELTPMAIA 1268342

Query: 349     AGRLLAQRLYAG---STVKCDYENVPTTVFTPLEYGACGLSEEKAVEKFGEENIEVYHSY 405
               AGR L+ RL+ G   +  K DYE VPT VF+    G  GL+E +A+EK+GE N++V+ S 
Sbjct: 1268341 AGRRLSDRLFGGPECANAKADYEGVPTVVFSHPTIGTIGLTEAEALEKYGEANVKVWTST 1268162

Query: 406     F---WPLEWTIPSRDNNKCYAKIICNTKDNERVVGFHVLGPNAGEVTQGFAAALKCGLTK 462
               F   W     I   D  K   K++     NE VVG HV+G  A E+ QGF  A+K G TK
Sbjct: 1268161 FVNLWYGPMPIDPSDKPKTAMKLV-TAGANELVVGLHVIGLGADEMLQGFGVAMKMGATK 1267985

Query: 463     KQLDSTIGIHPVCAEVFTTLS 483
                  DS I +HP  AE F TL+
Sbjct: 1267984 ADFDSCIALHPTAAEEFVTLA 1267922



 Score = 78.6 bits (192), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 88/365 (24%), Positives = 167/365 (45%), Gaps = 17/365 (4%)
 Frame = -1

Query: 131     YGQFIGPHRIKATNNKGKEKIYSAERFLIATGERPRYL-GIPGDKEYCISSDDLFSLPYC 189
               +G + GP+ ++  N K      +A+  ++A G  P    G+  D E   +SD+   L + 
Sbjct: 1713386 FGAYGGPNTVELGNGKK----VTAQDIILAPGSVPFVPPGVTIDGETVYTSDEGLRLEHV 1713219

Query: 190     PGKTLVVGASYVALECAGFLAGIGLDVTVM-VRSILLRGFDQDMANKIGEHM-EEHGIKF 247
               P    ++G+  + LE +     +G + T++     L+  FD+++A +    +    GI +
Sbjct: 1713218 PEYCAIIGSGIIGLEFSDVYTALGSECTLIEALPKLMPAFDREIAKQAERLLLTPRGIDY 1713039

Query: 248     IRQFVPIKVEQIEAGTPGRL---RVVAQSTNSE--EIIEG-EYNTVMLAIGRDACTRKIG 301
                      KV      TPG+L    VV +  ++E  E++E  E +T M+A GR   T K+G
Sbjct: 1713038 RTGVFASKV------TPGKLGEKPVVIEMIDAETKELVEVLEVDTCMVATGRVPNTGKLG 1712877

Query: 302     LETVGVKIN------EKTGKIPVTDEEQTNVPYIYAIGDILEDKVELTPVAIQAGRLLAQ 355
               L+  G++        ++T ++           ++Y IGD   + +++         + A 
Sbjct: 1712876 LDKHGIETPRGFVQVDETMRVLAGPGGAVADEHLYCIGD--ANGIQMLAHTASTQGVSAI 1712703

Query: 356     RLYAGSTVKCDYENVPTTVFTPLEYGACGLSEEKAVEKFGEENIEVYHS--YFWPLEWTI 413
                   G     ++E++P   FT  E    G+ E+ A ++   E  E+  +  +F      +
Sbjct: 1712702 ENICGRKHVVNHEDIPAACFTHPEVAQVGIDEDAAKDRAEAEGFELGKAVGHFRANSKAL 1712523

Query: 414     PSRDNNKCYAKIICNTKDNERVVGFHVLGPNAGEVTQGFAAALKCGLTKKQLDSTIGIHP 473
                  + +   AK++ N KD E+++G H++G +A ++ Q  A A   G T ++L  T   HP
Sbjct: 1712522 AEGEGDGI-AKVLFN-KDTEQILGVHIIGLHAADLIQECANAKAAGTTVRELAFTTHTHP 1712349

Query: 474     VCAEV 478
                 +EV
Sbjct: 1712348 TLSEV 1712334



 Score = 30.8 bits (68), Expect = 4.3,   Method: Composition-based stats.
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -3

Query: 55      LGGTCVNVGCIPKKLMHQAA 74
               +GGTCVN GC+P K +  A+
Sbjct: 1713702 VGGTCVNRGCVPSKALLAAS 1713643


>scaffold_41
          Length = 407180

 Score =  212 bits (540), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 143/439 (32%), Positives = 215/439 (48%), Gaps = 10/439 (2%)
 Frame = +1

Query: 54     GLGGTCVNVGCIPKKLMHQAALLGQALQDSRNYGWKVEETVKH---DWDRMIEAVQNHIG 110
              G GGTCVNVGC+PKK+M+ AA   ++          +  ++     DW  +      ++ 
Sbjct: 241159 GFGGTCVNVGCVPKKIMYNAAHCRESALGPTATAAGLGVSLSGGAVDWAALKRRRDAYVA 241338

Query: 111    SLNWGYRVALREKKVVYENAYGQFIGPHRIKATNNKGKEKIYSAERFLIATGERPRYLGI 170
               LN  Y    ++  V        F+    I    N+     Y+A+  ++A G  P  L I
Sbjct: 241339 GLNAAYERNWKKAGVEVLVGAASFVDARTIAVDGNR-----YAADEVVVAVGGAPASLDI 241503

Query: 171    PGDKEYCISSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVR--SILLRGF 228
              PG     + SDD F L   P K  VVGA Y+A+E AG L G+G D  +  R  ++L RGF
Sbjct: 241504 PGGA-LAVDSDDFFDLEDLPKKVCVVGAGYIAVELAGILHGLGSDADLAFRGDTVLRRGF 241680

Query: 229    DQDMANKIGEHMEEHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGE----Y 284
              D  +   I   +E HG   +R+  P  V +      G+L +        E+ +G     Y
Sbjct: 241681 DPFVVETIMGELEAHGPNLVRRATPAAVVE----ERGKLTL--------ELEDGRRLAGY 241824

Query: 285    NTVMLAIGRDACTRKIGLETVGVKINEKTGKIPVTDEEQTNVPYIYAIGDILEDKVELTP 344
              + V+ A+GR   T  + LE  GV ++ + G++ V D + ++   +YA+GD  +   ELTP
Sbjct: 241825 DAVVAAVGRAPATAALRLENAGVAVDAR-GRVIVDDYQNSSARGVYAVGDACDRGYELTP 242001

Query: 345    VAIQAGRLLAQRLYAGST-VKCDYENVPTTVFTPLEYGACGLSEEKAVEKFGEENIEVYH 403
              VAI AGR LA RL+ G    + DY ++ T VF+    G  GL+E  A  ++G+  + V  
Sbjct: 242002 VAIAAGRRLADRLFGGEPRARLDYADISTVVFSHPPIGVVGLTEPAARARYGD--VAVKE 242175

Query: 404    SYFWPLEWTIPSRDNNKCYAKIICNTKDNERVVGFHVLGPNAGEVTQGFAAALKCGLTKK 463
              S F  + + +         A  +      ERVVG H++GP + E+ QGFA ALK G T+ 
Sbjct: 242176 SRFPSMAFALNGAGAKVTTALKLVLAGPEERVVGLHLVGPGSDEMLQGFAVALKMGATRS 242355

Query: 464    QLDSTIGIHPVCAEVFTTL 482
               L++ + IHP  AE   T 
Sbjct: 242356 DLEAAVAIHPTVAEELVTF 242412


>scaffold_9
          Length = 1602328

 Score =  107 bits (267), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 93/367 (25%), Positives = 168/367 (45%), Gaps = 6/367 (1%)
 Frame = -3

Query: 117     RVALREKKVVYENAYGQFIGPHRIKATNNKGKEKIYSAERFLIATGERPRYLG-IPGDKE 175
               R   ++ KV Y   +G   GP+ +    N G  +   ++  LIATG  P  L   P D  
Sbjct: 1366250 RFLFKKYKVDYLQGHGTITGPNSVAVALNDGGSEAVESKNILIATGSEPSPLPPCPVDNA 1366071

Query: 176     --YCISSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVM-VRSILLRGFDQDM 232
                   + S     L   P    VVG   + LE       +G  VTV+     ++ G D+++
Sbjct: 1366070 GGKIVDSTGALVLDKIPKTMAVVGGGVIGLEMGSVWRRLGTKVTVVEYLGNIVPGVDKEV 1365891

Query: 233     ANKIGEHMEEHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIG 292
                      +++ G+KF      +  E ++ G    L        S+E  +  ++ V++A G
Sbjct: 1365890 GKAFLRVLKKQGMKFKLNTGVVASEVVDGGV--ELTHAPAKDPSKETTD-RFDVVLVATG 1365720

Query: 293     RDACTRKIGLETVGVKINEKTGKIPVTDEEQTNVPYIYAIGDILEDKVELTPVAIQAGRL 352
               R   T K+GL+ +G++  +K G++ V +  +T +P IYA GD++ D   L   A + G  
Sbjct: 1365719 RRPFTDKLGLDALGIE-TDKLGRVVVDEHFKTKIPSIYAFGDVV-DGPMLAHKAEEEGIA 1365546

Query: 353     LAQRLYAGSTVKCDYENVPTTVFTPLEYGACGLSEEKAVEKFGEENIEVYHSYFWPLEWT 412
                 + + AG     +Y+ +P  ++T  E    G +EE+      +E ++     F P    
Sbjct: 1365545 CVESI-AGFAGHVNYDVIPGVIYTHPELATAGKTEEQ----LKDEGVDYVVGSF-PFSAN 1365384

Query: 413     IPSR--DNNKCYAKIICNTKDNERVVGFHVLGPNAGEVTQGFAAALKCGLTKKQLDSTIG 470
                 +R   +++   K++C+ K  +R++G H++GPNAGE+       ++ G + + +  T  
Sbjct: 1365383 SRARAVGDSEGLVKVLCD-KATDRILGVHIIGPNAGEMIAEGVLGMEYGASSEDIARTCH 1365207

Query: 471     IHPVCAE 477
                HP  +E
Sbjct: 1365206 AHPTLSE 1365186



 Score = 75.5 bits (184), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 110/457 (24%), Positives = 188/457 (41%), Gaps = 21/457 (4%)
 Frame = +2

Query: 56     GGTCVNVGCIPKKLMHQAALLGQALQDSRNYGWKVEETVKHDWDRMIEAVQNHIGSLNWG 115
              GG C+NVGC+P K + + A   +  +    +G      V  D+  ++E ++     +   
Sbjct: 798026 GGDCLNVGCVPSKALLRCARAAREARRGAEFGVD-GAAVAVDFGAVMERMRRLRARIAPA 798202

Query: 116    YRVALREKKV--VYENAYGQFIGPHRIKATNNKGKEKIYSAERFLIATGERPRYLGIPGD 173
                 A        V++   G F+GP+ I+      K +     + ++ATG +     IPG 
Sbjct: 798203 DAHAATAAVGADVFQ-GRGVFVGPNEIEVNGQTLKFR-----KAVVATGGQAAVPSIPGL 798364

Query: 174    KEYCISSD-DLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRSI-LLRGFDQD 231
               E    ++  LF+    P + +VVGA  + LE A  LA  G  VT ++RS  +L   D D
Sbjct: 798365 AEAPYHTNATLFNATALPPRVVVVGAGPIGLEMAQALAVFGSKVTCVLRSAKVLPKEDPD 798544

Query: 232    MANKIGEHMEEHGIKFIRQFVPIKVEQIE----AGTPGRLRVVAQSTNSEEIIEGEYNTV 287
               A  +   +E  G+ F+      +VE       A  P  + V      +E  +E E   +
Sbjct: 798545 AAALVRAALERDGVAFVTGAAYKRVEHAPPKKGAAFP-TIGVAVDVDGAETRLECE--ML 798715

Query: 288    MLAIGRDACTRKIGLETVGVKINEKTGKIPVTDEEQTNVPYIYAIGDILEDKVELTPVA- 346
              ++A GR       GL+  GV  + + G + V D  +T  P +YA+GD+   + + T VA 
Sbjct: 798716 LVATGRKPNVEHCGLDKAGVAFDVRDG-VQVDDYLRTTNPDVYAVGDVCT-RYQFTHVAG 798889

Query: 347    IQAGRLLAQRLYAGSTVKCDYENVPTTVFTPLEYGACGLSEEKAVEK---FGEENIEVYH 403
                AG ++   L+ G         VP   +T  E    GL E     +          + H
Sbjct: 798890 TMAGMVVDNALFRGRHAFSKLV-VPWATYTEPEVAHVGLYERDVASQGLACDTYTTALAH 799066

Query: 404    SYFWPLEWTIPSRDNNKCYAKIICNTKDNERVVGFHVLGPNAGEVTQGFAAALKCGLTKK 463
              +    LE         + + K+ C  K  + ++G  ++  +AGE+      A++  +   
Sbjct: 799067 NDRAILEGA------TEGFVKVHCR-KGTDEILGATIVADHAGELISELTLAIQANVGLG 799225

Query: 464    QLDSTIGIHPVCAEVF---------TTLSVTKRSGAS 491
               +  TI  +P  +E           T     +R GA+
Sbjct: 799226 TIGKTIHPYPTVSEAIAGCGVAYNRTVWKTKRRDGAA 799336


>scaffold_3
          Length = 3001400

 Score = 89.7 bits (221), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 105/444 (23%), Positives = 195/444 (43%), Gaps = 21/444 (4%)
 Frame = +2

Query: 55      LGGTCVNVGCIPKKLMHQAALLGQALQDSRNYGWKVEETVKHDWDRMIE-------AVQN 107
               +GG C+NVGC P K +   A     L+ + ++G  V   V  D+  +++        +  
Sbjct: 2787698 MGGDCLNVGCFPSKALIACARKCHELKHAADFGVTVSGDVTVDFGFVMKRMRALRAGIAP 2787877

Query: 108     HIGSLNWGYRVALREKKVVYENAYGQFIGPHRIKATNNKGKEKIYSAERFLIATGERPRY 167
               H G   +G R    +  V       +F  P  +  T++ G+ +  + ++ +IATG     
Sbjct: 2787878 HDGVERYG-RDFCDDVCV----GVAKFASPTEVVITSHGGETQSVAFDKCMIATGASAAV 2788042

Query: 168     LGIPGDKEYC--ISSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVM-VRSIL 224
               + +PG ++ C  +++ + F+L   P +  ++GA  + +E A  L   G  VT+  V   L
Sbjct: 2788043 VPVPGLRD-CPHLTNGNFFNLEALPPRACLIGAGPIGIEMAQSLQRFGCAVTIFEVAPQL 2788219

Query: 225     LRGFDQDMANKIGEHMEEHGIK--FIRQFVPIKVE---QIEAGTPGRLRVVAQSTNSEEI 279
               L   D D A  + E +   G++  +  +   IK+     ++A  P     V  S  + ++
Sbjct: 2788220 LPREDPDAAKLVTEALIADGVEVHYAVKITGIKLAGELAMKAPWPTYDVSVTLSDGTAKV 2788399

Query: 280     IEGEYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIPVTDEEQTNVPYIYAIGDILEDK 339
                + E   ++ A GR      IGL+  GV  + +TG + ++D  +T+ P IY+ GD     
Sbjct: 2788400 FQCE--ALLNATGRAPNVSGIGLDEAGVDYDTRTG-VHISDLYETSAPNIYSCGDC-ASP 2788567

Query: 340     VELTPVAIQAGRLLAQRLYAGSTVKCDYENVPTTVFTPLEYGACGLSEEKAVEKFGEENI 399
                + T  A    R   + ++  +  K     VP   +T  E    GL E++  +K      
Sbjct: 2788568 YKFTHAADWQARCAVRNMFLQANSKHSDLLVPWATYTDPEIAHVGLYEKEMDDKG----- 2788732

Query: 400     EVYHSYFWPLEWTIPSRDNNKC------YAKIICNTKDNERVVGFHVLGPNAGEVTQGFA 453
                 Y +Y    +      D  KC      + KI C  K +++++G  ++GP AG++     
Sbjct: 2788733 IAYDTYVRQFK----DVDRCKCEGVTSGFVKISC-AKGSDQILGSTIVGPCAGDLISEIT 2788897

Query: 454     AALKCGLTKKQLDSTIGIHPVCAE 477
                 ++ G+  K +   +  +P  AE
Sbjct: 2788898 VCMQNGIGCKDIAGVMHPYPTTAE 2788969


>scaffold_6
          Length = 2755913

 Score = 45.8 bits (107), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/113 (23%), Positives = 54/113 (47%), Gaps = 2/113 (1%)
 Frame = -2

Query: 120    LREKKVVYENAYGQFIGPHRIKATNNKGKEKI-YSAERFLIATGERP-RYLGIPGDKEYC 177
              L++ +V Y+      +G  +++     G   +  +  + L+  G  P R  G+P D    
Sbjct: 945052 LKKFRVGYQQGTATLLGDGKVRVDRVGGAGCVDVAGAKLLVCCGSVPMRVGGVPFDGRRV 944873

Query: 178    ISSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRGFDQ 230
                +D + +L + P   ++VG+  +A+E A     +G  VT++VRS +    D+
Sbjct: 944872 FDADSINTLGFLPKSVVIVGSGIIAIEYAMIFRKLGAAVTMLVRSSMTSALDR 944714


>scaffold_5
          Length = 3000003

 Score = 45.1 bits (105), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/97 (31%), Positives = 48/97 (49%), Gaps = 7/97 (7%)
 Frame = -3

Query: 150    KIYSAERFLIATGERPRYLGIPGDKEY-------CISSDDLFSLPYCPGKTLVVGASYVA 202
              ++++    ++ATG  PR+LG PG++E        C + D  F   Y     +VVG    A
Sbjct: 719815 EVFTTSALVVATGASPRWLGAPGERELLSRGVHTCATCDGYF---YRDRDVVVVGGGDTA 719645

Query: 203    LECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIGEH 239
              +E A FLA I   V V+ R    R   + MA ++ +H
Sbjct: 719644 MEQALFLARIANRVYVVHRKNSFRA-SKAMATRVLKH 719537


>scaffold_10
          Length = 1654512

 Score = 44.3 bits (103), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 67/328 (20%), Positives = 126/328 (38%), Gaps = 24/328 (7%)
 Frame = +1

Query: 158    LIATGERP-RYLGIPGD------KEYCISSDDLFSLPYCPGKTLVVGASYVALECAGFLA 210
              ++ATG R  R+ G+  D      +     SD +  L + P + ++VG   +A+E A   A
Sbjct: 698035 VVATGSRAVRFDGLDYDGADAAGRRRVYDSDSVKGLSFLPRRVVIVGGGIIAVEYARIFA 698214

Query: 211    GIGLDVTVMVRSILLR------GFDQDMANKIGEHMEEHGIKFIRQFVPIKVEQIEAGTP 264
               +  DVT++VRS  L       G D  +A  +   + + G+  + +       +I     
Sbjct: 698215 ALAADVTLVVRSADLPKSLRRVGIDAGLAGALQADLRDAGVDILFE------TEIAGAAL 698376

Query: 265    GRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGVK-INEKTGKIPVTDEEQ 323
                  V     +   +   E + ++ A GR A TR +  +   V  +    G + V  E +
Sbjct: 698377 AGAAVAVALRDGRTL---EADVLLTATGRAAVTRGVFDDAALVDGLLAPNGDLLVDGELK 698547

Query: 324    TNVPYIYAIGDILEDKVELTPVAIQAGRLLAQRLYAGSTVKCDYE---------NVPTTV 374
              T    +   GD++    +L    I         +Y       D             P  +
Sbjct: 698548 TVHRAVSGAGDVV-GAPQLASTGIAQAEAAVDCVYGDGCALGDVSPAGLLASTARYPVGI 698724

Query: 375    FTPLEYGACGLSEEKAVEKFGEENIEVYHSYFWPLEWTIPSRD-NNKCYAKIICNTKDNE 433
              +T  E   CGL+ E A ++  +  + V H Y   +   +   D + +   K++       
Sbjct: 698725 WTVPELAFCGLTAEAAADRGLDVVVGVAH-YADTVRGHVRESDASTRSCLKLVVARDAPH 698901

Query: 434    RVVGFHVLGPNAGEVTQGFAAALKCGLT 461
               ++G H+ G +A E+       ++  +T
Sbjct: 698902 TILGVHLFGDDAAELVHFGTTLVQASMT 698985


>scaffold_16
          Length = 966663

 Score = 40.0 bits (92), Expect = 0.007,   Method: Composition-based stats.
 Identities = 54/201 (26%), Positives = 85/201 (42%), Gaps = 16/201 (7%)
 Frame = -1

Query: 153    SAERFLIATGERPRYLGIPGDKEY-------CISSDDLFSLPYCPGKTLVVGASYVALEC 205
              SA   ++ATG   R+LG+ G+ E+       C + D      Y      V+G    A+E 
Sbjct: 736605 SAHTLIVATGADSRWLGVAGESEFKGGGVSSCATCDGFL---YRDRDVAVIGGGDTAMED 736435

Query: 206    AGFLAGIGLDVTVMVRSILLRGFDQDMANKIGEH--MEEHGIKFIRQFVPIKVE-QIEAG 262
              A  LA     VTV+ R    R   + MA ++ EH  +E      +  F     E ++E G
Sbjct: 736434 ALVLARTSAKVTVVHRRDAFRA-SKAMATRVLEHPKIEVRWNATVASFSGTHEELEMEDG 736258

Query: 263    TPG---RLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIPVT 319
                      RV   ST S E    +     +AIG D  T+    + V VK    +G + + 
Sbjct: 736257 VKDIATLTRVHLTSTASGEASALDVAAAFVAIGHDPNTKLFADQLV-VK---PSGYLELA 736090

Query: 320    DEE---QTNVPYIYAIGDILE 337
                +   + +VP ++A GD+ +
Sbjct: 736089 GSKFATELSVPGVFAAGDVAD 736027


>scaffold_12
          Length = 1412611

 Score = 32.0 bits (71), Expect = 2.1,   Method: Composition-based stats.
 Identities = 49/208 (23%), Positives = 80/208 (38%), Gaps = 7/208 (3%)
 Frame = +1

Query: 154    AERFLIATGERPRYLGIPGDKEY-------CISSDDLFSLPYCPGKTLVVGASYVALECA 206
              A   ++ATG   R     G+ EY       C + D  F   Y   +  VVG    A+E A
Sbjct: 981868 ARALVLATGAMGRPPSFAGEGEYLGKGVSYCATCDGAF---YRESEVAVVGTHTDAIEEA 982038

Query: 207    GFLAGIGLDVTVMVRSILLRGFDQDMANKIGEHMEEHGIKFIRQFVPIKVEQIEAGTPGR 266
               FL      V  +         ++  A+   E  E  G+  ++ +    ++ +E    G 
Sbjct: 982039 TFLTKFASTVHWITS-------NEPKADD-AEAWELIGLDNVKHWPRTAMKAVEGDASGV 982194

Query: 267    LRVVAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIPVTDEEQTNV 326
                V  +    +E++       +   G    T    L+T  V+  +  G + V D   T++
Sbjct: 982195 TGVTIKPRGEDELLLPVEGCFIYMSGSKPITDF--LQTGQVEFRDD-GGVAVDDNMATSM 982365

Query: 327    PYIYAIGDILEDKVELTPVAIQAGRLLA 354
              P +YAIGDI     +   VA   G + A
Sbjct: 982366 PGVYAIGDIRNTPFKQVVVAASDGCIAA 982449


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000035_1.0 # Protein # Thioredoxin reductase 2 (TR2) #
Homo sapiens # Complete
         (524 letters)

Database: genome.fa 
           1185 sequences; 56,660,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

scaffold_11                                                           412   e-115
scaffold_8                                                            265   9e-71
scaffold_41                                                           227   3e-59
scaffold_9                                                            112   1e-24
scaffold_3                                                             74   5e-13
scaffold_7                                                             64   4e-10
scaffold_10                                                            40   0.009

>scaffold_11
          Length = 1405779

 Score =  412 bits (1060), Expect = e-115,   Method: Composition-based stats.
 Identities = 219/484 (45%), Positives = 309/484 (63%), Gaps = 8/484 (1%)
 Frame = -3

Query: 39     DYDXXXXXXXXXXXACAKEAAQLGRKVAVVDYVEPSPQGTRWGLGGTCVNVGCIPKKLMH 98
              DYD           AC+KE A+LG KVAV+D+V+PSP G+ WGLGGTCVNVGCIPKKLMH
Sbjct: 787987 DYDVVVVGGGSGGLACSKECAKLGAKVAVLDFVKPSPAGSTWGLGGTCVNVGCIPKKLMH 787808

Query: 99     QAALLGGLIQD-APNYGWEVAQPVPHDWRKMAEAVQNHVKSLNWGHRVQLQDRKVKYFNI 157
               A+++G  ++D A  +GW+ A    HDW  M   VQ+H+KSLN+ +RV L++  + Y N 
Sbjct: 787807 TASIIGETLKDDAAAFGWKDAAAGAHDWESMKSTVQDHIKSLNFKYRVALREAGITYLNR 787628

Query: 158    KASFVDEHTVCGVAKGGKEILLSADHIIIATGGRPRYPTHIEGALEYGITSDDIFWLKES 217
                 F D++T+    K G +  ++A   I+A GGRP       G  E+ I SDD+F L ++
Sbjct: 787627 LGEFEDKNTISLTDKKGNKTSVTAARFIVAVGGRPNKLGCPGG--EHAIDSDDLFSLPKA 787454

Query: 218    PGKTLVVGASYVALECAGFLTGIGLDTTIMMRSIPLRGFDQQMSSMVIEHMASHGTRFLR 277
              PG+ L VG  Y+ALEC GF  G+G  TT M+RSI LRGFD++    +  H+  HG +   
Sbjct: 787453 PGRVLCVGGGYIALECGGFTAGMGYPTTCMVRSILLRGFDRECVGKIEAHIKHHGVQLQV 787274

Query: 278    GCAPSRVRR-LPDGQLQVTWEDSTTGKEDTGTFDTVLWAIGRVPDTRSL---NLEKAGVD 333
              G  P+++ +    G L VT  DS  G  +   +DTVL A GR  DT +L   N+  A  +
Sbjct: 787273 GVTPAKIEKDAATGVLTVT--DSGGGVHE---YDTVLVATGRYADTAALGIDNVPGASAN 787109

Query: 334    TSPDTQKILVDSREATSVPHIYAIGDVVEGRPELTPIAIMAGRLLVQRLFGGSSDLMDYD 393
               +  T+K+     +    PH+YAIGDVVEGRPELTP+AI AG  L +RLFGG ++ MDY+
Sbjct: 787108 VNAKTKKLECVDEQLPGAPHVYAIGDVVEGRPELTPVAIEAGLRLARRLFGGKTEPMDYE 786929

Query: 394    NVPTTVFTPLEYGCVGLSEEEAVARHGQEHVEVYHAHYKPLEFTVAGRDASQ---CYVKM 450
               V TT+FTPLEYG +GLSE++A A+ G+ +VE Y + + PLE+ ++   + +   C+ K+
Sbjct: 786928 CVATTIFTPLEYGTIGLSEDDAKAQLGECNVESYISEFAPLEYALSETRSERGDGCFAKL 786749

Query: 451    VCLREPPQLVLGLHFLGPNAGEVTQGFALGIKCGASYAQVMRTVGIHPTCSEEVVKLRIS 510
              V  +   + V+G H+LGPNAGE+TQGF++ ++ GA+YA  + TVGIHPT +EE   + ++
Sbjct: 786748 VVDKSTGK-VVGFHYLGPNAGEITQGFSIAMRKGATYADFISTVGIHPTVAEEFTSMTVT 786572

Query: 511    KRSG 514
              K SG
Sbjct: 786571 KSSG 786560


>scaffold_8
          Length = 1961717

 Score =  265 bits (678), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 185/464 (39%), Positives = 258/464 (55%), Gaps = 9/464 (1%)
 Frame = -2

Query: 53      ACAKEAAQL-GRKVAVVDYVEPSPQGTRWGLGGTCVNVGCIPKKLMHQAALLGGLIQDAP 111
               A AK AAQ+ G+KVAVV+         R  LGGTCVNVGC+PKK+M  AA +   + DAP
Sbjct: 1269247 ASAKRAAQVHGKKVAVVE---------RGALGGTCVNVGCVPKKVMFNAAHIMECLHDAP 1269095

Query: 112     NYGWEVAQPVPHDWRKMAEAVQNHVKSLNWGHRVQLQDRKVKYFNIKASFVDEHTVCGVA 171
                Y +  A+ V  DW K+  A  N+V  LN  +   L    +      ASF D+     V 
Sbjct: 1269094 LYQYSGAEDVKLDWGKLKTARDNYVVRLNGIYGRGLDGADITTLTGLASFGDDGE---VM 1268924

Query: 172     KGGKEILLSADHIIIATGGRPRYPTHIEGALEYGITSDDIFWLKESPGKTLVVGASYVAL 231
                GG+    +ADH+++A GG P  P  +EG  E+ ITSD  F L+  P   LVVGA Y+A+
Sbjct: 1268923 VGGEA--YTADHVLVAVGGVPSLPLELEGG-EHTITSDGFFELEAMPESCLVVGAGYIAV 1268753

Query: 232     ECAGFLTGIGLDTTIMMR-SIPLRGFDQQMSSMVIEHMASHGTRFLRGCAPSRVRRLPDG 290
               E AG L  +G DTT+ +R    LR FD+ +S+ +   M   G +   G   ++V  L DG
Sbjct: 1268752 EMAGILNALGCDTTLAVRGDKALRAFDELLSTTLDAEMKRAGMKIATGTTLAKV-ELVDG 1268576

Query: 291     QLQVTWEDSTTGKEDTGTFDTVLWAIGRVPDTRSLNLEKAGVDTSPDTQKILVDSREATS 350
               +  VT  D  T     G FD VL A+GR P    L LE AGVD + D   + VD  + T+
Sbjct: 1268575 KKVVTTTDGAT----LGPFDEVLMAVGRKPLVEPLKLENAGVDLN-DEGYVAVDEYQRTT 1268411

Query: 351     VPH-IYAIGDVVEGRPELTPIAIMAGRLLVQRLFGG---SSDLMDYDNVPTTVFTPLEYG 406
                 H +YA+GDV  G  ELTP+AI AGR L  RLFGG   ++   DY+ VPT VF+    G
Sbjct: 1268410 SEHNVYALGDVC-GAIELTPMAIAAGRRLSDRLFGGPECANAKADYEGVPTVVFSHPTIG 1268234

Query: 407     CVGLSEEEAVARHGQEHVEVYHAHYKPLEF---TVAGRDASQCYVKMVCLREPPQLVLGL 463
                +GL+E EA+ ++G+ +V+V+ + +  L +    +   D  +  +K+V      +LV+GL
Sbjct: 1268233 TIGLTEAEALEKYGEANVKVWTSTFVNLWYGPMPIDPSDKPKTAMKLVT-AGANELVVGL 1268057

Query: 464     HFLGPNAGEVTQGFALGIKCGASYAQVMRTVGIHPTCSEEVVKL 507
               H +G  A E+ QGF + +K GA+ A     + +HPT +EE V L
Sbjct: 1268056 HVIGLGADEMLQGFGVAMKMGATKADFDSCIALHPTAAEEFVTL 1267925



 Score = 85.1 bits (209), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 90/346 (26%), Positives = 160/346 (46%), Gaps = 15/346 (4%)
 Frame = -1

Query: 174     GKEILLSADHIIIATGGRPRYPTHIEGALEYGITSDDIFWLKESPGKTLVVGASYVALEC 233
               GK++  +A  II+A G  P  P  +    E   TSD+   L+  P    ++G+  + LE 
Sbjct: 1713344 GKKV--TAQDIILAPGSVPFVPPGVTIDGETVYTSDEGLRLEHVPEYCAIIGSGIIGLEF 1713171

Query: 234     AGFLTGIGLDTTIMMRSIP--LRGFDQQMSSMVIEHMAS-HGTRFLRGCAPSRVRRLPDG 290
               +   T +G + T ++ ++P  +  FD++++      + +  G  +  G   S+V     G
Sbjct: 1713170 SDVYTALGSECT-LIEALPKLMPAFDREIAKQAERLLLTPRGIDYRTGVFASKVTPGKLG 1712994

Query: 291     QLQVTWE--DSTTGKE--DTGTFDTVLWAIGRVPDTRSLNLEKAGVDTS------PDTQK 340
               +  V  E  D+ T KE  +    DT + A GRVP+T  L L+K G++T        +T +
Sbjct: 1712993 EKPVVIEMIDAET-KELVEVLEVDTCMVATGRVPNTGKLGLDKHGIETPRGFVQVDETMR 1712817

Query: 341     ILVDSREATSVPHIYAIGDVVEGRPELTPIAIMAGRLLVQRLFGGSSDLMDYDNVPTTVF 400
               +L     A +  H+Y IGD   G   L   A   G   ++ + G    +++++++P   F
Sbjct: 1712816 VLAGPGGAVADEHLYCIGDA-NGIQMLAHTASTQGVSAIENICG-RKHVVNHEDIPAACF 1712643

Query: 401     TPLEYGCVGLSEEEAVARHGQEHVEVYHA--HYKPLEFTVAGRDASQCYVKMVCLREPPQ 458
               T  E   VG+ E+ A  R   E  E+  A  H++     +A  +     +  V   +  +
Sbjct: 1712642 THPEVAQVGIDEDAAKDRAEAEGFELGKAVGHFRANSKALAEGEGDG--IAKVLFNKDTE 1712469

Query: 459     LVLGLHFLGPNAGEVTQGFALGIKCGASYAQVMRTVGIHPTCSEEV 504
                +LG+H +G +A ++ Q  A     G +  ++  T   HPT SE +
Sbjct: 1712468 QILGVHIIGLHAADLIQECANAKAAGTTVRELAFTTHTHPTLSEVI 1712331



 Score = 29.6 bits (65), Expect = 10.0,   Method: Composition-based stats.
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -3

Query: 82      LGGTCVNVGCIPKKLMHQAA 101
               +GGTCVN GC+P K +  A+
Sbjct: 1713702 VGGTCVNRGCVPSKALLAAS 1713643


>scaffold_41
          Length = 407180

 Score =  227 bits (579), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 165/463 (35%), Positives = 241/463 (52%), Gaps = 10/463 (2%)
 Frame = +1

Query: 53     ACAKEAAQLGRKVAVVD---YVEPSPQGTRWGLGGTCVNVGCIPKKLMHQAALLG----G 105
              A A+ AA  G +V +VD     + S + T  G GGTCVNVGC+PKK+M+ AA       G
Sbjct: 241066 AFARRAAGYGARVLLVDKGPTRDASGKRTGAGFGGTCVNVGCVPKKIMYNAAHCRESALG 241245

Query: 106    LIQDAPNYGWEVAQPVPHDWRKMAEAVQNHVKSLNWGHRVQLQDRKVKYFNIKASFVDEH 165
                  A   G  ++     DW  +      +V  LN  +    +   V+     ASFVD  
Sbjct: 241246 PTATAAGLGVSLSGGAV-DWAALKRRRDAYVAGLNAAYERNWKKAGVEVLVGAASFVDAR 241422

Query: 166    TVCGVAKGGKEILLSADHIIIATGGRPRYPTHIEGALEYGITSDDIFWLKESPGKTLVVG 225
              T+     G +    +AD +++A GG P       GAL   + SDD F L++ P K  VVG
Sbjct: 241423 TI--AVDGNR---YAADEVVVAVGGAPASLDIPGGAL--AVDSDDFFDLEDLPKKVCVVG 241581

Query: 226    ASYVALECAGFLTGIGLDTTIMMR--SIPLRGFDQQMSSMVIEHMASHGTRFLRGCAPSR 283
              A Y+A+E AG L G+G D  +  R  ++  RGFD  +   ++  + +HG   +R   P+ 
Sbjct: 241582 AGYIAVELAGILHGLGSDADLAFRGDTVLRRGFDPFVVETIMGELEAHGPNLVRRATPAA 241761

Query: 284    VRRLPDGQLQVTWEDSTTGKEDTGTFDTVLWAIGRVPDTRSLNLEKAGVDTSPDTQKILV 343
              V     G+L +  ED   G+   G +D V+ A+GR P T +L LE AGV       +++V
Sbjct: 241762 VVE-ERGKLTLELED---GRRLAG-YDAVVAAVGRAPATAALRLENAGVAVDA-RGRVIV 241923

Query: 344    DSREATSVPHIYAIGDVVEGRPELTPIAIMAGRLLVQRLFGGSSDL-MDYDNVPTTVFTP 402
              D  + +S   +YA+GD  +   ELTP+AI AGR L  RLFGG     +DY ++ T VF+ 
Sbjct: 241924 DDYQNSSARGVYAVGDACDRGYELTPVAIAAGRRLADRLFGGEPRARLDYADISTVVFSH 242103

Query: 403    LEYGCVGLSEEEAVARHGQEHVEVYHAHYKPLEFTVAGRDASQCYVKMVCLREPPQLVLG 462
                 G VGL+E  A AR+G   V V  + +  + F + G  A       + L  P + V+G
Sbjct: 242104 PPIGVVGLTEPAARARYGD--VAVKESRFPSMAFALNGAGAKVTTALKLVLAGPEERVVG 242277

Query: 463    LHFLGPNAGEVTQGFALGIKCGASYAQVMRTVGIHPTCSEEVV 505
              LH +GP + E+ QGFA+ +K GA+ + +   V IHPT +EE+V
Sbjct: 242278 LHLVGPGSDEMLQGFAVALKMGATRSDLEAAVAIHPTVAEELV 242406


>scaffold_9
          Length = 1602328

 Score =  112 bits (279), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 106/371 (28%), Positives = 167/371 (45%), Gaps = 12/371 (3%)
 Frame = -3

Query: 144     RVQLQDRKVKYFNIKASFVDEHTVCGVAKGGKEILLSADHIIIATGGRPRY--PTHIEGA 201
               R   +  KV Y     +    ++V      G    + + +I+IATG  P    P  ++ A
Sbjct: 1366250 RFLFKKYKVDYLQGHGTITGPNSVAVALNDGGSEAVESKNILIATGSEPSPLPPCPVDNA 1366071

Query: 202     LEYGITSDDIFWLKESPGKTLVVGASYVALECAGFLTGIGLDTTI---MMRSIPLRGFDQ 258
                   + S     L + P    VVG   + LE       +G   T+   +   +P  G D+
Sbjct: 1366070 GGKIVDSTGALVLDKIPKTMAVVGGGVIGLEMGSVWRRLGTKVTVVEYLGNIVP--GVDK 1365897

Query: 259     QMSSMVIEHMASHGTRFL--RGCAPSRVRRLPDGQLQVTWEDSTT-GKEDTGTFDTVLWA 315
               ++    +  +   G +F    G   S V    DG +++T   +    KE T  FD VL A
Sbjct: 1365896 EVGKAFLRVLKKQGMKFKLNTGVVASEV---VDGGVELTHAPAKDPSKETTDRFDVVLVA 1365726

Query: 316     IGRVPDTRSLNLEKAGVDTSPDTQKILVDSREATSVPHIYAIGDVVEGRPELTPIAIMAG 375
                GR P T  L L+  G++T     +++VD    T +P IYA GDVV+G P L   A   G
Sbjct: 1365725 TGRRPFTDKLGLDALGIETD-KLGRVVVDEHFKTKIPSIYAFGDVVDG-PMLAHKAEEEG 1365552

Query: 376     RLLVQRLFGGSSDLMDYDNVPTTVFTPLEYGCVGLSEEEAVARHGQEHVEVYHAHYKPLE 435
                  V+ +  G +  ++YD +P  ++T  E    G +EE+ +   G ++V           
Sbjct: 1365551 IACVESI-AGFAGHVNYDVIPGVIYTHPELATAGKTEEQ-LKDEGVDYV------VGSFP 1365396

Query: 436     FTVAGR----DASQCYVKMVCLREPPQLVLGLHFLGPNAGEVTQGFALGIKCGASYAQVM 491
               F+   R      S+  VK++C +   + +LG+H +GPNAGE+     LG++ GAS   + 
Sbjct: 1365395 FSANSRARAVGDSEGLVKVLCDKATDR-ILGVHIIGPNAGEMIAEGVLGMEYGASSEDIA 1365219

Query: 492     RTVGIHPTCSE 502
               RT   HPT SE
Sbjct: 1365218 RTCHAHPTLSE 1365186



 Score = 80.9 bits (198), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 128/483 (26%), Positives = 196/483 (40%), Gaps = 18/483 (3%)
 Frame = +2

Query: 40     YDXXXXXXXXXXXACAKEAAQLGRKVAVVDYVEPSPQGTRWGLGGTCVNVGCIPKKLMHQ 99
              YD             AK+AA+ G + A+++             GG C+NVGC+P K + +
Sbjct: 797924 YDLVALGAGAGGLVSAKQAARRGARSALIE---------SHLAGGDCLNVGCVPSKALLR 798076

Query: 100    AALLGGLIQDAPNYGWEVAQPVPHDWRKMAEAVQNHVKSLNWGHRVQLQDRKVKYFNIKA 159
               A      +    +G + A  V  D+     AV   ++ L    R ++            
Sbjct: 798077 CARAAREARRGAEFGVDGAA-VAVDF----GAVMERMRRL----RARIAPADAHAATAAV 798229

Query: 160    SFVDEHTVCGVAKGGKEILLSADHI-----IIATGGRPRYPTHIEGALEYGI-TSDDIFW 213
                 D     GV  G  EI ++   +     ++ATGG+   P+ I G  E    T+  +F 
Sbjct: 798230 G-ADVFQGRGVFVGPNEIEVNGQTLKFRKAVVATGGQAAVPS-IPGLAEAPYHTNATLFN 798403

Query: 214    LKESPGKTLVVGASYVALECAGFLTGIGLDTTIMMRSIP-LRGFDQQMSSMVIEHMASHG 272
                  P + +VVGA  + LE A  L   G   T ++RS   L   D   +++V   +   G
Sbjct: 798404 ATALPPRVVVVGAGPIGLEMAQALAVFGSKVTCVLRSAKVLPKEDPDAAALVRAALERDG 798583

Query: 273    TRFLRGCAPSRVRRLPDGQ----LQVTWEDSTTGKEDTGTFDTVLWAIGRVPDTRSLNLE 328
                F+ G A  RV   P  +      +       G E     + +L A GR P+     L+
Sbjct: 798584 VAFVTGAAYKRVEHAPPKKGAAFPTIGVAVDVDGAETRLECEMLLVATGRKPNVEHCGLD 798763

Query: 329    KAGV--DTSPDTQKILVDSREATSVPHIYAIGDVVEGRPELTPIA-IMAGRLLVQRLFGG 385
              KAGV  D     Q   VD    T+ P +YA+GDV   R + T +A  MAG ++   LF G
Sbjct: 798764 KAGVAFDVRDGVQ---VDDYLRTTNPDVYAVGDVCT-RYQFTHVAGTMAGMVVDNALFRG 798931

Query: 386    SSDLMDYDNVPTTVFTPLEYGCVGLSEEEAVARHG----QEHVEVYHAHYKPLEFTVAGR 441
                       VP   +T  E   VGL E + VA  G         + H     LE      
Sbjct: 798932 RHAFSKL-VVPWATYTEPEVAHVGLYERD-VASQGLACDTYTTALAHNDRAILE------ 799087

Query: 442    DASQCYVKMVCLREPPQLVLGLHFLGPNAGEVTQGFALGIKCGASYAQVMRTVGIHPTCS 501
               A++ +VK+ C R+    +LG   +  +AGE+     L I+       + +T+  +PT S
Sbjct: 799088 GATEGFVKVHC-RKGTDEILGATIVADHAGELISELTLAIQANVGLGTIGKTIHPYPTVS 799264

Query: 502    EEV 504
              E +
Sbjct: 799265 EAI 799273


>scaffold_3
          Length = 3001400

 Score = 73.9 bits (180), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 112/466 (24%), Positives = 194/466 (41%), Gaps = 19/466 (4%)
 Frame = +2

Query: 58      AAQLGRKVAVVDYVEPSPQGTRWGLGGTCVNVGCIPKKLMHQAALLGGLIQDAPNYGWEV 117
               A  LG+K  +++         +  +GG C+NVGC P K +   A     ++ A ++G  V
Sbjct: 2787653 AKSLGKKALLIE---------KHYMGGDCLNVGCFPSKALIACARKCHELKHAADFGVTV 2787805

Query: 118     AQPVPHDW-------RKMAEAVQNHVKSLNWGHRVQLQDRKVKYFNIKASFVDEHTVCGV 170
               +  V  D+       R +   +  H     +G R    D  V      A F     V   
Sbjct: 2787806 SGDVTVDFGFVMKRMRALRAGIAPHDGVERYG-RDFCDDVCVGV----AKFASPTEVVIT 2787970

Query: 171     AKGGKEILLSADHIIIATGGRPRYPTHIEGALEY-GITSDDIFWLKESPGKTLVVGASYV 229
               + GG+   ++ D  +IATG        + G  +   +T+ + F L+  P +  ++GA  +
Sbjct: 2787971 SHGGETQSVAFDKCMIATGASAAV-VPVPGLRDCPHLTNGNFFNLEALPPRACLIGAGPI 2788147

Query: 230     ALECAGFLTGIGLDTTIMMRSIPLRGF-DQQMSSMVIEHMASHGTRFLRGCAPSRVRRLP 288
                +E A  L   G   TI   +  L    D   + +V E + + G         + ++   
Sbjct: 2788148 GIEMAQSLQRFGCAVTIFEVAPQLLPREDPDAAKLVTEALIADGVEVHYAVKITGIKLAG 2788327

Query: 289     DGQLQVTW---EDSTTGKEDTGTF---DTVLWAIGRVPDTRSLNLEKAGVDTSPDTQKIL 342
               +  ++  W   + S T  + T      + +L A GR P+   + L++AGVD    T   +
Sbjct: 2788328 ELAMKAPWPTYDVSVTLSDGTAKVFQCEALLNATGRAPNVSGIGLDEAGVDYDTRTGVHI 2788507

Query: 343     VDSREATSVPHIYAIGDVVEGRPELTPIAIMAGRLLVQRLF----GGSSDLMDYDNVPTT 398
                D  E TS P+IY+ GD      + T  A    R  V+ +F       SDL+    VP  
Sbjct: 2788508 SDLYE-TSAPNIYSCGDCASPY-KFTHAADWQARCAVRNMFLQANSKHSDLL----VPWA 2788669

Query: 399     VFTPLEYGCVGLSEEEAVARHGQEHVEVYHAHYKPLEFTVAGRDASQCYVKMVCLREPPQ 458
                +T  E   VGL E+E +   G  + + Y   +K ++        +  +VK+ C +   Q
Sbjct: 2788670 TYTDPEIAHVGLYEKE-MDDKGIAY-DTYVRQFKDVD-RCKCEGVTSGFVKISCAKGSDQ 2788840

Query: 459     LVLGLHFLGPNAGEVTQGFALGIKCGASYAQVMRTVGIHPTCSEEV 504
                +LG   +GP AG++     + ++ G     +   +  +PT +E V
Sbjct: 2788841 -ILGSTIVGPCAGDLISEITVCMQNGIGCKDIAGVMHPYPTTAEAV 2788975


>scaffold_7
          Length = 2177197

 Score = 64.3 bits (155), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 95/358 (26%), Positives = 141/358 (39%), Gaps = 8/358 (2%)
 Frame = +2

Query: 155     FNIKASFVDEHTVCGVAKGGKEILLSADHIIIATGGRPRYPTHIEGALEYGITSDDIFWL 214
               F+  A FV E  V  VA  G    L+  H I+ATG  P  P  + G  E    +  + W 
Sbjct: 1396013 FSGTAEFVSEDCV-EVAADGDRRRLAFAHCIVATGASPALPD-VPGLREAPYRTH-LSWY 1396183

Query: 215     --KESPGKTLVVGASYVALECAGFLTGIGLDTTIMMRSIPLRGFDQQMSSMVIEHMASHG 272
                 +E P + +V+G    A E A  L+ +G    +  R   L   D   +S+V   + + G
Sbjct: 1396184 DCEELPRRAVVLGGGPQAAETAQALSVLGCRVCLAARGEFLPREDAAAASVVRRELEADG 1396363

Query: 273     TRFLR-----GCAPSRVRRLPDGQLQVTWEDSTTGKEDTGTFDTVLWAIGRVPDTRSLNL 327
                  L        +      LP G       D    ++     D +L A GR P    L L
Sbjct: 1396364 VEILTNVSFVAVSVDEAEALPVGVAIRETNDFYASEKRVLRCDALLVAAGRKPRVAGLGL 1396543

Query: 328     EKAGVDTSPDTQK-ILVDSREATSVPHIYAIGDVVEGRPELTPIAIMAGRLLVQRLFGGS 386
               + AGV  + D Q  I VD    TS P I+A GDV  G         MA   +   LFGG 
Sbjct: 1396544 DAAGV--AYDAQNGIRVDGMLRTSNPRIFAAGDVASGYQHAHAAVAMAAAAVENALFGGD 1396717

Query: 387     SDLMDYDNVPTTVFTPLEYGCVGLSEEEAVARHGQEHVEVYHAHYKPLEFTVAGRDASQC 446
               +D      +P    T  E   VGL E +          ++ H     L+    G      
Sbjct: 1396718 ADFGAV-LLPWVTHTAPELAHVGLYERDVAGGCDVYETDLAHVDRAILDGDEGG------ 1396876

Query: 447     YVKMVCLREPPQLVLGLHFLGPNAGEVTQGFALGIKCGASYAQVMRTVGIHPTCSEEV 504
                V++V  R   + +LG   + P+AG++    A+ +       ++ R V  +P  ++ V
Sbjct: 1396877 LVRVVTARGSDE-ILGATVVAPHAGDLIAEIAVAMHGKLGLGELGRVVVPYPALAQAV 1397047


>scaffold_10
          Length = 1654512

 Score = 39.7 bits (91), Expect = 0.009,   Method: Composition-based stats.
 Identities = 65/280 (23%), Positives = 114/280 (40%), Gaps = 25/280 (8%)
 Frame = +3

Query: 225     GASYVALECAGFLTGIGLDTTIMMRSIPL---RGFDQQMSSMVIEHMASHGT--RFLRG- 278
               G   + +E A  L  +G   T+++R   L   +  D  + S +   +   G   R+  G 
Sbjct: 1162002 GGGVIGVEYAFILRHLGARVTLVLREPSLLDGKAVDDDIRSAIAGRLEKVGVTVRYEDGD 1162181

Query: 279     CAPSRVRRLPDGQLQVTWEDSTTGKEDTGTFDTVLWAIGRVPDTRSLNLEKAGVDTSPDT 338
                  +   R P G  +V       G  +    D VL A+GR   T SL+L   G+  +P  
Sbjct: 1162182 VVSAEPPRTPRGPGRVV-----LGSGEEIACDVVLSAVGRSGATASLDLAAGGLRATPQG 1162346

Query: 339     Q-KILVDSREATSVPHIYAIGDVVEGRPELTPIAIMAGRLL-----VQRLF--------- 383
                  +   +  A+    ++A GD   GR  ++P  +++  L      V+  F         
Sbjct: 1162347 HVDVDAATMRASGAARVWAAGDCA-GRNAVSPPGLLSTGLAQCHVAVRDAFPEEWAAYVA 1162523

Query: 384     GGSSDL----MDYDNVPTTVFTPLEYGCVGLSEEEAVARHGQEHVEVYHAHYKPLEFTVA 439
               G  S +     +  +  T ++     G VGLS E+A   HG +   +       ++  V 
Sbjct: 1162524 GHGSHVGEAVKEDKHAATALWIEDGVGAVGLSAEQAADAHGPDAASIAVPFNDTIKACVQ 1162703

Query: 440     GRDASQCYVKMVCLREPPQLVLGLHFLGPNAGEVTQGFAL 479
                R   + ++K+V  R   + +LG+H  G +A E+ Q  A+
Sbjct: 1162704 PRPDDE-FLKLVFQRSTGR-ILGVHIFGRDAAEMVQHAAV 1162817



 Score = 30.8 bits (68), Expect = 4.9,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 37/74 (50%)
 Frame = +2

Query: 406     GCVGLSEEEAVARHGQEHVEVYHAHYKPLEFTVAGRDASQCYVKMVCLREPPQLVLGLHF 465
               G VGLS E+A   HG +   +       ++  V  R   + ++K+V  R   + +LG+H 
Sbjct: 1163651 GAVGLSAEQAADAHGPDAASIAVPFNDTIKACVQPRPDDE-FLKLVFQRSTGR-ILGVHI 1163824

Query: 466     LGPNAGEVTQGFAL 479
                G +A E+ Q  A+
Sbjct: 1163825 FGRDAAEMVQHAAV 1163866


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000036_1.0 # Protein # Thioredoxin reductase 3 (TR3) #
Homo sapiens # Complete
         (754 letters)

Database: genome.fa 
           1185 sequences; 56,660,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

scaffold_11                                                           432   e-121
scaffold_8                                                            210   6e-54
scaffold_41                                                           208   2e-53
scaffold_9                                                             96   2e-19
scaffold_3                                                             72   3e-12
scaffold_1                                                             48   5e-05
scaffold_28                                                            47   1e-04
scaffold_7                                                             47   1e-04
scaffold_10                                                            44   8e-04
scaffold_641                                                           33   0.003
scaffold_15                                                            42   0.004
scaffold_5                                                             41   0.005
scaffold_2                                                             40   0.010
scaffold_13                                                            40   0.012
scaffold_35                                                            39   0.027
scaffold_12                                                            38   0.049
scaffold_6                                                             37   0.093
scaffold_23                                                            35   0.42 
scaffold_318                                                           35   0.44 
scaffold_16                                                            35   0.47 
scaffold_21                                                            33   0.99 
scaffold_4                                                             33   1.1  
scaffold_63                                                            33   1.3  
scaffold_19                                                            33   1.5  
scaffold_743                                                           33   1.7  
scaffold_17                                                            33   1.7  
scaffold_26                                                            32   2.2  
scaffold_181                                                           32   2.4  
scaffold_56                                                            32   2.9  
scaffold_154                                                           32   4.5  
scaffold_22                                                            32   4.5  
scaffold_72                                                            31   4.9  
scaffold_39                                                            31   5.8  
scaffold_612                                                           31   6.2  
scaffold_57                                                            31   7.4  
scaffold_80                                                            31   7.5  

>scaffold_11
          Length = 1405779

 Score =  432 bits (1111), Expect = e-121,   Method: Composition-based stats.
 Identities = 227/487 (46%), Positives = 309/487 (63%), Gaps = 7/487 (1%)
 Frame = -3

Query: 265    AYDYDXXXXXXXXXXXXCAKEAAILGKKVMVLDFVVPSPQGTSWGLGGTCVNVGCIPKKL 324
               +DYD            C+KE A LG KV VLDFV PSP G++WGLGGTCVNVGCIPKKL
Sbjct: 787993 GFDYDVVVVGGGSGGLACSKECAKLGAKVAVLDFVKPSPAGSTWGLGGTCVNVGCIPKKL 787814

Query: 325    MHQAALLGQALCD-SRKFGWEYNQQVRHNWETMTKAIQNHISSLNWGYRLSLREKAVAYV 383
              MH A+++G+ L D +  FGW+      H+WE+M   +Q+HI SLN+ YR++LRE  + Y+
Sbjct: 787813 MHTASIIGETLKDDAAAFGWKDAAAGAHDWESMKSTVQDHIKSLNFKYRVALREAGITYL 787634

Query: 384    NSYGEFVEHHKIKATNKKGQETYYTAAQFVIATGERPRYLGIQGDKEYCITSDDLFSLPY 443
              N  GEF + + I  T+KKG +T  TAA+F++A G RP  LG  G  E+ I SDDLFSLP 
Sbjct: 787633 NRLGEFEDKNTISLTDKKGNKTSVTAARFIVAVGGRPNKLGCPGG-EHAIDSDDLFSLPK 787457

Query: 444    CPGKTLVVGASYVALECAGFLAGFGLDVTVMVRSILLRGFDQEMAEKVGSYMEQHGVKFL 503
               PG+ L VG  Y+ALEC GF AG G   T MVRSILLRGFD+E   K+ ++++ HGV+  
Sbjct: 787456 APGRVLCVGGGYIALECGGFTAGMGYPTTCMVRSILLRGFDRECVGKIEAHIKHHGVQLQ 787277

Query: 504    RKFIPVMVQQLEKGSPGKLKVLAKSTEGTETIEGVYNTVLLAIGRDSCTRKIGLEKI--- 560
                  P    ++EK +   +  +  S  G       Y+TVL+A GR + T  +G++ +   
Sbjct: 787276 VGVTPA---KIEKDAATGVLTVTDSGGGVHE----YDTVLVATGRYADTAALGIDNVPGA 787118

Query: 561    GVKINEKSGKIPVNDVEQTNVPYVYAVGDILEDKPELTPVAIQSGKLLAQRLFGASLEKC 620
                 +N K+ K+   D +    P+VYA+GD++E +PELTPVAI++G  LA+RLFG   E  
Sbjct: 787117 SANVNAKTKKLECVDEQLPGAPHVYAIGDVVEGRPELTPVAIEAGLRLARRLFGGKTEPM 786938

Query: 621    DYINVPTTVFTPLEYGCCGLSEEKAIEVYKKENLEIYHTLFWPLEWTVA---GRENNTCY 677
              DY  V TT+FTPLEYG  GLSE+ A     + N+E Y + F PLE+ ++       + C+
Sbjct: 786937 DYECVATTIFTPLEYGTIGLSEDDAKAQLGECNVESYISEFAPLEYALSETRSERGDGCF 786758

Query: 678    AKIICNKFDHDRVIGFHILGPNAGEVTQGFAAAMKCGLTKQLLDDTIGIHPTCGEVFTTL 737
              AK++ +K    +V+GFH LGPNAGE+TQGF+ AM+ G T      T+GIHPT  E FT++
Sbjct: 786757 AKLVVDK-STGKVVGFHYLGPNAGEITQGFSIAMRKGATYADFISTVGIHPTVAEEFTSM 786581

Query: 738    EITKSSG 744
               +TKSSG
Sbjct: 786580 TVTKSSG 786560



 Score = 32.0 bits (71), Expect = 3.2,   Method: Composition-based stats.
 Identities = 34/118 (28%), Positives = 42/118 (35%), Gaps = 10/118 (8%)
 Frame = -1

Query: 39    GPMTGCGRAGDPISHARGGVGGRGERLPRGFARVVRVASEGSVRRXXXXXXXXXXXAFRF 98
              P+ G G    P S  R    GR  R P       R +   + R            ++R 
Sbjct: 23418 APVRGSGPTARPSSSTRSSTPGRASRPPTTPCSRRRTSPAPTPR---SRASARRSESWRR 23248

Query: 99    VSRPGRARSESETLERSPPQSPGPGKAGDAP----------NRRSGHVRGARVLSPPG 146
               R    R  S    RSP  SP PG + D P          +RR+   RGA   SPPG
Sbjct: 23247 SWRSAAVRCSSAPTSRSPKPSPRPG-SNDGP*RCRASGKWISRRTSSRRGASRASPPG 23077


>scaffold_8
          Length = 1961717

 Score =  210 bits (535), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 155/465 (33%), Positives = 240/465 (51%), Gaps = 10/465 (2%)
 Frame = -2

Query: 283     AKEAA-ILGKKVMVLDFVVPSPQGTSWGLGGTCVNVGCIPKKLMHQAALLGQALCDSRKF 341
               AK AA + GKKV V++            LGGTCVNVGC+PKK+M  AA + + L D+  +
Sbjct: 1269241 AKRAAQVHGKKVAVVE---------RGALGGTCVNVGCVPKKVMFNAAHIMECLHDAPLY 1269089

Query: 342     GWEYNQQVRHNWETMTKAIQNHISSLNWGYRLSLREKAVAYVNSYGEFVEHHKIKATNKK 401
                +   + V+ +W  +  A  N++  LN  Y   L    +  +     F +  ++      
Sbjct: 1269088 QYSGAEDVKLDWGKLKTARDNYVVRLNGIYGRGLDGADITTLTGLASFGDDGEVMV---- 1268921

Query: 402     GQETYYTAAQFVIATGERPRY-LGIQGDKEYCITSDDLFSLPYCPGKTLVVGASYVALEC 460
               G E Y TA   ++A G  P   L ++G  E+ ITSD  F L   P   LVVGA Y+A+E 
Sbjct: 1268920 GGEAY-TADHVLVAVGGVPSLPLELEGG-EHTITSDGFFELEAMPESCLVVGAGYIAVEM 1268747

Query: 461     AGFLAGFGLDVTVMVR-SILLRGFDQEMAEKVGSYMEQHGVKFLRKFIPVMVQQLEKGSP 519
               AG L   G D T+ VR    LR FD+ ++  + + M++ G+K         V+ ++    
Sbjct: 1268746 AGILNALGCDTTLAVRGDKALRAFDELLSTTLDAEMKRAGMKIATGTTLAKVELVDG--- 1268576

Query: 520     GKLKVLAKSTEGTETIEGVYNTVLLAIGRDSCTRKIGLEKIGVKINEKSGKIPVNDVEQT 579
                  K +  +T+G     G ++ VL+A+GR      + LE  GV +N++ G + V++ ++T
Sbjct: 1268575 ---KKVVTTTDGATL--GPFDEVLMAVGRKPLVEPLKLENAGVDLNDE-GYVAVDEYQRT 1268414

Query: 580     NVPY-VYAVGDILEDKPELTPVAIQSGKLLAQRLFGA---SLEKCDYINVPTTVFTPLEY 635
                  + VYA+GD+     ELTP+AI +G+ L+ RLFG    +  K DY  VPT VF+    
Sbjct: 1268413 TSEHNVYALGDVC-GAIELTPMAIAAGRRLSDRLFGGPECANAKADYEGVPTVVFSHPTI 1268237

Query: 636     GCCGLSEEKAIEVYKKENLEIYHTLF---WPLEWTVAGRENNTCYAKIICNKFDHDRVIG 692
               G  GL+E +A+E Y + N++++ + F   W     +   +      K++    + + V+G
Sbjct: 1268236 GTIGLTEAEALEKYGEANVKVWTSTFVNLWYGPMPIDPSDKPKTAMKLVTAGAN-ELVVG 1268060

Query: 693     FHILGPNAGEVTQGFAAAMKCGLTKQLLDDTIGIHPTCGEVFTTL 737
                H++G  A E+ QGF  AMK G TK   D  I +HPT  E F TL
Sbjct: 1268059 LHVIGLGADEMLQGFGVAMKMGATKADFDSCIALHPTAAEEFVTL 1267925



 Score = 67.0 bits (162), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 94/391 (24%), Positives = 166/391 (42%), Gaps = 21/391 (5%)
 Frame = -1

Query: 364     ISSLNWGYRLSLREKAVAYVNSYGEFVEHHKIKATNKKGQETYYTAAQFVIATGERPRYL 423
               ++ +  G   SL    V  +  +G +   + ++  N K      TA   ++A G  P   
Sbjct: 1713452 VNKVRGGLEGSLGRLGVELIPEFGAYGGPNTVELGNGKK----VTAQDIILAPGSVPFVP 1713285

Query: 424     -GIQGDKEYCITSDDLFSLPYCPGKTLVVGASYVALECAGFLAGFGLDVTVM-VRSILLR 481
                G+  D E   TSD+   L + P    ++G+  + LE +      G + T++     L+ 
Sbjct: 1713284 PGVTIDGETVYTSDEGLRLEHVPEYCAIIGSGIIGLEFSDVYTALGSECTLIEALPKLMP 1713105

Query: 482     GFDQEMAEKVGSYM-EQHGVKFLRKFIPVMVQQLEKGSPGKL--------KVLAKSTEGT 532
                FD+E+A++    +    G+ +             K +PGKL         + A++ E  
Sbjct: 1713104 AFDREIAKQAERLLLTPRGIDYRTGVFA------SKVTPGKLGEKPVVIEMIDAETKELV 1712943

Query: 533     ETIEGVYNTVLLAIGRDSCTRKIGLEKIGVKINEKSGKIPVNDVEQTNV--------PYV 584
               E +E   +T ++A GR   T K+GL+K G  I    G + V++  +            ++
Sbjct: 1712942 EVLE--VDTCMVATGRVPNTGKLGLDKHG--IETPRGFVQVDETMRVLAGPGGAVADEHL 1712775

Query: 585     YAVGDILEDKPELTPVAIQSGKLLAQRLFGASLEKCDYINVPTTVFTPLEYGCCGLSEEK 644
               Y +GD       L   A   G    + + G      ++ ++P   FT  E    G+ E+ 
Sbjct: 1712774 YCIGDA-NGIQMLAHTASTQGVSAIENICGRK-HVVNHEDIPAACFTHPEVAQVGIDEDA 1712601

Query: 645     AIEVYKKENLEIYHTL--FWPLEWTVAGRENNTCYAKIICNKFDHDRVIGFHILGPNAGE 702
               A +  + E  E+   +  F      +A  E +   AK++ NK D ++++G HI+G +A +
Sbjct: 1712600 AKDRAEAEGFELGKAVGHFRANSKALAEGEGDGI-AKVLFNK-DTEQILGVHIIGLHAAD 1712427

Query: 703     VTQGFAAAMKCGLTKQLLDDTIGIHPTCGEV 733
               + Q  A A   G T + L  T   HPT  EV
Sbjct: 1712426 LIQECANAKAAGTTVRELAFTTHTHPTLSEV 1712334



 Score = 33.5 bits (75), Expect = 1.1,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 26/59 (44%), Gaps = 4/59 (6%)
 Frame = +2

Query: 101    RPGRARSESETLERSPPQSPGPG---KAGDA-PNRRSGHVRGARVLSPPGRRARLSSPG 155
              RPG   S      RSP  +P       AGDA P+RRSG  RG     P       SSPG
Sbjct: 334919 RPGARPSSGARRARSPSGTPRRSVRRSAGDATPSRRSGATRGTSPWGPRSPARTTSSPG 335095



 Score = 32.0 bits (71), Expect = 3.7,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 27/64 (42%), Gaps = 10/64 (15%)
 Frame = +2

Query: 97     RFVSRPGRARSES----------ETLERSPPQSPGPGKAGDAPNRRSGHVRGARVLSPPG 146
              R  +RP RA S S           +  RSP + PGP   G    R + H RG+    P  
Sbjct: 259229 RPSTRPTRAPSSSGRRPPGPSARASAARSPTRRPGPSPRGRTGPRAARHCRGSPTPRPRS 259408

Query: 147    RRAR 150
               RAR
Sbjct: 259409 ARAR 259420



 Score = 31.6 bits (70), Expect = 3.9,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 29/70 (41%), Gaps = 12/70 (17%)
 Frame = -3

Query: 99     VSRPGRARSESETLERSPPQSPGPGKAGDAPNRRSGHVRGAR------------VLSPPG 146
              V+ P   R+E   +         P + G AP R   H RGA             VL+ PG
Sbjct: 335013 VASPAERRTERRGVPEGERARRAP-ELGRAPGRLEVHARGADLGDRRPVQRPPGVLARPG 334837

Query: 147    RRARLSSPGP 156
              RRAR + P P
Sbjct: 334836 RRARGADPRP 334807



 Score = 31.2 bits (69), Expect = 5.0,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 9/64 (14%)
 Frame = +3

Query: 102    PGRARSESETLERSPPQSPGPGKAGDAPNRRSGHVRGARVL---------SPPGRRARLS 152
              PG AR        +PP+     +   AP   +  VR A+VL         +PPG RARL 
Sbjct: 425046 PGGAR-------ETPPREGVAPRGAAAPRGGARRVRAAKVLPRGPEARPRAPPGGRARLR 425204

Query: 153    SPGP 156
              +P P
Sbjct: 425205 APPP 425216


>scaffold_41
          Length = 407180

 Score =  208 bits (529), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 148/464 (31%), Positives = 227/464 (48%), Gaps = 9/464 (1%)
 Frame = +1

Query: 283    AKEAAILGKKVMVLD---FVVPSPQGTSWGLGGTCVNVGCIPKKLMHQAALLGQALCDSR 339
              A+ AA  G +V+++D       S + T  G GGTCVNVGC+PKK+M+ AA   ++     
Sbjct: 241072 ARRAAGYGARVLLVDKGPTRDASGKRTGAGFGGTCVNVGCVPKKIMYNAAHCRESALGPT 241251

Query: 340    KFGWEYNQQVRH---NWETMTKAIQNHISSLNWGYRLSLREKAVAYVNSYGEFVEHHKIK 396
                       +     +W  + +    +++ LN  Y  + ++  V  +     FV+   I 
Sbjct: 241252 ATAAGLGVSLSGGAVDWAALKRRRDAYVAGLNAAYERNWKKAGVEVLVGAASFVDARTIA 241431

Query: 397    ATNKKGQETYYTAAQFVIATGERPRYLGIQGDKEYCITSDDLFSLPYCPGKTLVVGASYV 456
                  +     Y A + V+A G  P  L I G     + SDD F L   P K  VVGA Y+
Sbjct: 241432 VDGNR-----YAADEVVVAVGGAPASLDIPGGA-LAVDSDDFFDLEDLPKKVCVVGAGYI 241593

Query: 457    ALECAGFLAGFGLDVTVMVR--SILLRGFDQEMAEKVGSYMEQHGVKFLRKFIPVMVQQL 514
              A+E AG L G G D  +  R  ++L RGFD  + E +   +E HG   +R+  P  V + 
Sbjct: 241594 AVELAGILHGLGSDADLAFRGDTVLRRGFDPFVVETIMGELEAHGPNLVRRATPAAVVE- 241770

Query: 515    EKGSPGKLKVLAKSTEGTETIEGVYNTVLLAIGRDSCTRKIGLEKIGVKINEKSGKIPVN 574
              E+G       L    E    + G Y+ V+ A+GR   T  + LE  GV ++ + G++ V+
Sbjct: 241771 ERGK------LTLELEDGRRLAG-YDAVVAAVGRAPATAALRLENAGVAVDAR-GRVIVD 241926

Query: 575    DVEQTNVPYVYAVGDILEDKPELTPVAIQSGKLLAQRLFGASLE-KCDYINVPTTVFTPL 633
              D + ++   VYAVGD  +   ELTPVAI +G+ LA RLFG     + DY ++ T VF+  
Sbjct: 241927 DYQNSSARGVYAVGDACDRGYELTPVAIAAGRRLADRLFGGEPRARLDYADISTVVFSHP 242106

Query: 634    EYGCCGLSEEKAIEVYKKENLEIYHTLFWPLEWTVAGRENNTCYAKIICNKFDHDRVIGF 693
                G  GL+E  A   Y   ++ +  + F  + + + G       A  +      +RV+G 
Sbjct: 242107 PIGVVGLTEPAARARYG--DVAVKESRFPSMAFALNGAGAKVTTALKLVLAGPEERVVGL 242280

Query: 694    HILGPNAGEVTQGFAAAMKCGLTKQLLDDTIGIHPTCGEVFTTL 737
              H++GP + E+ QGFA A+K G T+  L+  + IHPT  E   T 
Sbjct: 242281 HLVGPGSDEMLQGFAVALKMGATRSDLEAAVAIHPTVAEELVTF 242412



 Score = 32.0 bits (71), Expect = 3.3,   Method: Composition-based stats.
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = -2

Query: 104    RARSESETLERSPPQSPGPGKAGDAPNRRSGHVRGARVLSPPG 146
              RA    + + R+P   PG G+AGDA   R G  +   VL PP 
Sbjct: 255337 RAVRGEDVVLRAPGGVPGQGRAGDAA--RGGQAQAEEVLEPPA 255215


>scaffold_9
          Length = 1602328

 Score = 95.9 bits (237), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 93/378 (24%), Positives = 167/378 (44%), Gaps = 6/378 (1%)
 Frame = -3

Query: 372     RLSLREKAVAYVNSYGEFVEHHKIKATNKKGQETYYTAAQFVIATGERPRYLG---IQGD 428
               R   ++  V Y+  +G     + +      G      +   +IATG  P  L    +   
Sbjct: 1366250 RFLFKKYKVDYLQGHGTITGPNSVAVALNDGGSEAVESKNILIATGSEPSPLPPCPVDNA 1366071

Query: 429     KEYCITSDDLFSLPYCPGKTLVVGASYVALECAGFLAGFGLDVTVM-VRSILLRGFDQEM 487
                   + S     L   P    VVG   + LE        G  VTV+     ++ G D+E+
Sbjct: 1366070 GGKIVDSTGALVLDKIPKTMAVVGGGVIGLEMGSVWRRLGTKVTVVEYLGNIVPGVDKEV 1365891

Query: 488     AEKVGSYMEQHGVKFLRKFIPVMVQQLEKGSPGKLKVLAKSTEGTETIEGVYNTVLLAIG 547
                +     +++ G+KF +    V+  ++  G  G     A + + ++     ++ VL+A G
Sbjct: 1365890 GKAFLRVLKKQGMKF-KLNTGVVASEVVDG--GVELTHAPAKDPSKETTDRFDVVLVATG 1365720

Query: 548     RDSCTRKIGLEKIGVKINEKSGKIPVNDVEQTNVPYVYAVGDILEDKPELTPVAIQSGKL 607
               R   T K+GL+ +G++  +K G++ V++  +T +P +YA GD++ D P L   A + G  
Sbjct: 1365719 RRPFTDKLGLDALGIE-TDKLGRVVVDEHFKTKIPSIYAFGDVV-DGPMLAHKAEEEGIA 1365546

Query: 608     LAQRLFGASLEKCDYINVPTTVFTPLEYGCCGLSEEKAIEVYKKENLEIYHTLFWPLEWT 667
                 + + G +    +Y  +P  ++T  E    G +EE+     K E ++ Y    +P    
Sbjct: 1365545 CVESIAGFA-GHVNYDVIPGVIYTHPELATAGKTEEQ----LKDEGVD-YVVGSFPFSAN 1365384

Query: 668     VAGRE--NNTCYAKIICNKFDHDRVIGFHILGPNAGEVTQGFAAAMKCGLTKQLLDDTIG 725
                  R   ++    K++C+K   DR++G HI+GPNAGE+       M+ G + + +  T  
Sbjct: 1365383 SRARAVGDSEGLVKVLCDKAT-DRILGVHIIGPNAGEMIAEGVLGMEYGASSEDIARTCH 1365207

Query: 726     IHPTCGEVFTTLEITKSS 743
                HPT  E      +  SS
Sbjct: 1365206 AHPTLSEAMKEACMAASS 1365153



 Score = 77.4 bits (189), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 116/434 (26%), Positives = 181/434 (41%), Gaps = 12/434 (2%)
 Frame = +2

Query: 311    GGTCVNVGCIPKKLMHQAALLGQALCDSRKFGWEYNQQVRHNWETMTKAIQNHISSLNWG 370
              GG C+NVGC+P K + + A   +      +FG +           M +  +         
Sbjct: 798026 GGDCLNVGCVPSKALLRCARAAREARRGAEFGVDGAAVAVDFGAVMERMRRLRARIAPAD 798205

Query: 371    YRLSLREKAVAYVNSYGEFVEHHKIKATNKKGQETYYTAAQFVIATGERPRYLGIQGDKE 430
                 +            G FV  ++I+     GQ   +  A  V+ATG +     I G  E
Sbjct: 798206 AHAATAAVGADVFQGRGVFVGPNEIEVN---GQTLKFRKA--VVATGGQAAVPSIPGLAE 798370

Query: 431    YCI-TSDDLFSLPYCPGKTLVVGASYVALECAGFLAGFGLDVTVMVRSI-LLRGFDQEMA 488
                  T+  LF+    P + +VVGA  + LE A  LA FG  VT ++RS  +L   D + A
Sbjct: 798371 APYHTNATLFNATALPPRVVVVGAGPIGLEMAQALAVFGSKVTCVLRSAKVLPKEDPDAA 798550

Query: 489    EKVGSYMEQHGVKFLRKFIPVMVQQL--EKGSPGKLKVLAKSTEGTET-IEGVYNTVLLA 545
                V + +E+ GV F+       V+    +KG+      +A   +G ET +E     +L+A
Sbjct: 798551 ALVRAALERDGVAFVTGAAYKRVEHAPPKKGAAFPTIGVAVDVDGAETRLE--CEMLLVA 798724

Query: 546    IGRDSCTRKIGLEKIGVKINEKSGKIPVNDVEQTNVPYVYAVGDILEDKPELTPVA-IQS 604
               GR       GL+K GV  + + G + V+D  +T  P VYAVGD+   + + T VA   +
Sbjct: 798725 TGRKPNVEHCGLDKAGVAFDVRDG-VQVDDYLRTTNPDVYAVGDVCT-RYQFTHVAGTMA 798898

Query: 605    GKLLAQRLFGASLEKCDYINVPTTVFTPLEYGCCGLSEEK------AIEVYKKENLEIYH 658
              G ++   LF         + VP   +T  E    GL E        A + Y      + H
Sbjct: 798899 GMVVDNALFRGR-HAFSKLVVPWATYTEPEVAHVGLYERDVASQGLACDTY---TTALAH 799066

Query: 659    TLFWPLEWTVAGRENNTCYAKIICNKFDHDRVIGFHILGPNAGEVTQGFAAAMKCGLTKQ 718
                   LE    G      + K+ C K   D ++G  I+  +AGE+      A++  +   
Sbjct: 799067 NDRAILEGATEG------FVKVHCRK-GTDEILGATIVADHAGELISELTLAIQANVGLG 799225

Query: 719    LLDDTIGIHPTCGE 732
               +  TI  +PT  E
Sbjct: 799226 TIGKTIHPYPTVSE 799267



 Score = 33.9 bits (76), Expect = 0.92,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
 Frame = -3

Query: 102     PGRARSESETLERSP------PQSPGPGKAGDAPNRRSGHVRGARVLSPPGRRARLSSP 154
               PG      +  +R+P      P+  GPG+ GDA  R  G  RGA  L  PG R   ++P
Sbjct: 1274285 PGETGLPRQLRQRAPRGVPRGPRDAGPGRHGDARRRHRGEARGAPRL--PGARGPENAP 1274115


>scaffold_3
          Length = 3001400

 Score = 72.0 bits (175), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 107/463 (23%), Positives = 199/463 (42%), Gaps = 16/463 (3%)
 Frame = +2

Query: 286     AAILGKKVMVLDFVVPSPQGTSWGLGGTCVNVGCIPKKLMHQAALLGQALCDSRKFGWEY 345
               A  LGKK ++++            +GG C+NVGC P K +   A     L  +  FG   
Sbjct: 2787653 AKSLGKKALLIE---------KHYMGGDCLNVGCFPSKALIACARKCHELKHAADFGVTV 2787805

Query: 346     NQQVRHNWETMTK---AIQNHISSLNWGYRLSLREKAVAYVNSYGEFVEHHKIKATNKKG 402
               +  V  ++  + K   A++  I+  + G     R+          +F    ++  T+  G
Sbjct: 2787806 SGDVTVDFGFVMKRMRALRAGIAPHD-GVERYGRDFCDDVCVGVAKFASPTEVVITSHGG 2787982

Query: 403     QETYYTAAQFVIATGERPRYLGIQGDKEYC--ITSDDLFSLPYCPGKTLVVGASYVALEC 460
               +       + +IATG     + + G ++ C  +T+ + F+L   P +  ++GA  + +E 
Sbjct: 2787983 ETQSVAFDKCMIATGASAAVVPVPGLRD-CPHLTNGNFFNLEALPPRACLIGAGPIGIEM 2788159

Query: 461     AGFLAGFGLDVTVM-VRSILLRGFDQEMAEKVGSYMEQHGVK--FLRKFIPV-MVQQLEK 516
               A  L  FG  VT+  V   LL   D + A+ V   +   GV+  +  K   + +  +L  
Sbjct: 2788160 AQSLQRFGCAVTIFEVAPQLLPREDPDAAKLVTEALIADGVEVHYAVKITGIKLAGELAM 2788339

Query: 517     GSP-GKLKVLAKSTEGTETIEGVYNTVLLAIGRDSCTRKIGLEKIGVKINEKSGKIPVND 575
                +P     V    ++GT  +      +L A GR      IGL++ GV  + ++G + ++D
Sbjct: 2788340 KAPWPTYDVSVTLSDGTAKVFQC-EALLNATGRAPNVSGIGLDEAGVDYDTRTG-VHISD 2788513

Query: 576     VEQTNVPYVYAVGDILEDKPELTPVAIQSGKLLAQRLFGASLEKCDYINVPTTVFTPLEY 635
               + +T+ P +Y+ GD      + T  A    +   + +F  +  K   + VP   +T  E 
Sbjct: 2788514 LYETSAPNIYSCGDCASPY-KFTHAADWQARCAVRNMFLQANSKHSDLLVPWATYTDPEI 2788690

Query: 636     GCCGLSEEK------AIEVYKKENLEIYHTLFWPLEWTVAGRENNTCYAKIICNKFDHDR 689
                  GL E++      A + Y ++  ++        E   +G      + KI C K   D+
Sbjct: 2788691 AHVGLYEKEMDDKGIAYDTYVRQFKDVDRC---KCEGVTSG------FVKISCAK-GSDQ 2788840

Query: 690     VIGFHILGPNAGEVTQGFAAAMKCGLTKQLLDDTIGIHPTCGE 732
               ++G  I+GP AG++       M+ G+  + +   +  +PT  E
Sbjct: 2788841 ILGSTIVGPCAGDLISEITVCMQNGIGCKDIAGVMHPYPTTAE 2788969



 Score = 32.7 bits (73), Expect = 2.0,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = +2

Query: 97     RFVSRPGRARSESETLERSPPQSPGPGKAGDAPNRRSGHVRGARVLSP-PGRRARLSSP 154
              R V  P  AR   E L  +PP++PG     D  +RR GH    R L   PG  AR  SP
Sbjct: 485093 RAVRAPAVARGAREDLP-APPRAPGRRGPRDPGHRRRGHGDARRGLRRGPGAAARGGSP 485266



 Score = 32.0 bits (71), Expect = 2.9,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 24/54 (44%)
 Frame = +3

Query: 101     RPGRARSESETLERSPPQSPGPGKAGDAPNRRSGHVRGARVLSPPGRRARLSSP 154
               RP  ARS   T   +   SPG G AG      +   R  R  +P GR A  SSP
Sbjct: 1143906 RPRSARSARST---ATTASPGSGSAGPRSRSATSRPRARRSTAPRGRSAAASSP 1144058



 Score = 32.0 bits (71), Expect = 3.1,   Method: Composition-based stats.
 Identities = 20/42 (47%), Positives = 24/42 (57%)
 Frame = -1

Query: 114    RSPPQSPGPGKAGDAPNRRSGHVRGARVLSPPGRRARLSSPG 155
              R+PP++ GPG  G A  RR  H+RGAR L   G  A L   G
Sbjct: 777971 RAPPRA-GPGVPGAA--RREPHLRGARALRIEGGHAALRQDG 777855



 Score = 31.6 bits (70), Expect = 4.2,   Method: Composition-based stats.
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = +1

Query: 122     PGKAGDAPNRRSGHVRGARVLSPPGRRARLSSPGP 156
               P ++ +A  RR G  RGAR L      ARL  PGP
Sbjct: 2404390 PAQSAEAQARREGQ-RGARALPQAAAEARLPRPGP 2404491


>scaffold_1
          Length = 3520325

 Score = 47.8 bits (112), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 26/79 (32%), Positives = 42/79 (53%)
 Frame = +2

Query: 179     VVIFSKSYCPHSTRVKELFSSLGVECNVLELDQVDDGARVQEVLSEITNQKTVPNIFVNK 238
               VV+F K  CP+  +  E     G E   ++   V     VQ+ L+ +T ++TVPN+F+  
Sbjct: 2060645 VVVFHKPRCPYCRKAFEALRRAGAEPRAID---VSRRPGVQDALAAMTGRRTVPNVFIGG 2060815

Query: 239     VHVGGCDQTFQAYQSGLLQ 257
                 VGG D+T    ++G L+
Sbjct: 2060816 ASVGGGDETVALRRNGELR 2060872



 Score = 36.2 bits (82), Expect = 0.15,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = -1

Query: 97      RFVSRPGRARSESETLERSPPQSPGPGKAGDA-PNRRSGHVRGARVLSPPGRRA 149
               R V  P +      T  R+ P + GP +A    P+RRSGH  GA  L PP R A
Sbjct: 2111858 RRVQAPAQTAHRRATRGRAAPGARGPRRADPVLPSRRSGHGEGAPGLGPPRRCA 2111697



 Score = 35.8 bits (81), Expect = 0.22,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 49/94 (52%), Gaps = 5/94 (5%)
 Frame = +3

Query: 173     LIERSRVVIFSKS-----YCPHSTRVKELFSSLGVECNVLELDQVDDGARVQEVLSEITN 227
               +++ + V++F K       C  S    ++ +++G +      D + D   V+  + E ++
Sbjct: 2069901 MVDDNTVMLFMKGTKIFPQCGFSNMAVQILNAIGQDFETY--DCLSD-ENVRSTIKEFSD 2070071

Query: 228     QKTVPNIFVNKVHVGGCDQTFQAYQSGLLQKLLQ 261
                 T+P ++V+   VGG D   + Y++G LQ++++
Sbjct: 2070072 WPTIPQLYVDGEFVGGSDIMLEMYEAGELQEMIE 2070173



 Score = 35.0 bits (79), Expect = 0.42,   Method: Composition-based stats.
 Identities = 18/32 (56%), Positives = 18/32 (56%)
 Frame = -1

Query: 116     PPQSPGPGKAGDAPNRRSGHVRGARVLSPPGR 147
               P Q PGP  AGD   R  GH RG RV   PGR
Sbjct: 1206080 PGQEPGPRGAGDG--RLRGHRRGVRVAQRPGR 1205991



 Score = 30.8 bits (68), Expect = 7.0,   Method: Composition-based stats.
 Identities = 18/43 (41%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
 Frame = -3

Query: 116    PPQSPGPGKAGDAPNRRSGHVRGARVLSPPGRR----ARLSSP 154
              PP+ P P   GDA     G  R  R   PPG R    ARL +P
Sbjct: 692679 PPRGPLPRAGGDAVGPGVGDARVPRRRGPPGARVGIEARLRAP 692551


>scaffold_28
          Length = 481284

 Score = 46.6 bits (109), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/76 (32%), Positives = 41/76 (53%)
 Frame = +1

Query: 170    LVGLIERSRVVIFSKSYCPHSTRVKELFSSLGVECNVLELDQVDDGARVQEVLSEITNQK 229
              L GLI    V++ S    P   + K+L  + G +  V+ELD+V DG  ++  L  +  + 
Sbjct: 285619 LDGLIAGEPVLMLSFVR*PFCVKAKQLLDAKGAKYTVVELDEVSDGPALRAELGGLVGRT 285798

Query: 230    TVPNIFVNKVHVGGCD 245
              +VP I++    VGGC+
Sbjct: 285799 SVPAIWIQSDFVGGCN 285846


>scaffold_7
          Length = 2177197

 Score = 46.6 bits (109), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 78/351 (22%), Positives = 135/351 (38%), Gaps = 8/351 (2%)
 Frame = +2

Query: 373     LSLREKAVAYVNSYGEFVEHHKIKATNKKGQETYYTAAQFVIATGERPRYLGIQGDKEYC 432
               L  R   ++  +   EFV    ++     G       A  ++ATG  P    + G +E  
Sbjct: 1395983 LEKRHPNLSVFSGTAEFVSEDCVEVA-ADGDRRRLAFAHCIVATGASPALPDVPGLREAP 1396159

Query: 433     I-TSDDLFSLPYCPGKTLVVGASYVALECAGFLAGFGLDVTVMVRSILLRGFDQEMAEKV 491
                 T    +     P + +V+G    A E A  L+  G  V +  R   L   D   A  V
Sbjct: 1396160 YRTHLSWYDCEELPRRAVVLGGGPQAAETAQALSVLGCRVCLAARGEFLPREDAAAASVV 1396339

Query: 492     GSYMEQHGVKFLRK--FIPVMVQQLEKGSPGKLKVLAKSTEGTETIEGVYNTVLLAIGRD 549
                  +E  GV+ L    F+ V V + E    G           +E      + +L+A GR 
Sbjct: 1396340 RRELEADGVEILTNVSFVAVSVDEAEALPVGVAIRETNDFYASEKRVLRCDALLVAAGRK 1396519

Query: 550     SCTRKIGLEKIGVKINEKSGKIPVNDVEQTNVPYVYAVGDILEDKPELTPVAIQSGKLLA 609
                    +GL+  GV  + ++G I V+ + +T+ P ++A GD+             +   + 
Sbjct: 1396520 PRVAGLGLDAAGVAYDAQNG-IRVDGMLRTSNPRIFAAGDVASGYQHAHAAVAMAAAAVE 1396696

Query: 610     QRLFGASLEKCDYINVPTTVFTPLEYGCCGLSEEK---AIEVYKKENLEIYHTLFWPLEW 666
                 LFG   +    + +P    T  E    GL E       +VY+ +   +   +      
Sbjct: 1396697 NALFGGDAD-FGAVLLPWVTHTAPELAHVGLYERDVAGGCDVYETDLAHVDRAI------ 1396855

Query: 667     TVAGRENNTCYAKIICNKFDHDRVIGFHILGPNAGEVTQGFAAAM--KCGL 715
                + G E      +++  +   D ++G  ++ P+AG++    A AM  K GL
Sbjct: 1396856 -LDGDEGG--LVRVVTAR-GSDEILGATVVAPHAGDLIAEIAVAMHGKLGL 1396996



 Score = 34.7 bits (78), Expect = 0.52,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
 Frame = -2

Query: 100    SRPGRARSESETLERSPPQSPGPGKAGDAPNRR------SGHVRGARVLSPPGRRARLSS 153
              SRPGR R+   T     P++P P ++  +P  R            AR  + PGRRAR S 
Sbjct: 983760 SRPGRRRAPCST----SPRAPSPTRSSRSPTSRPLARSCPRRCSTARGPTGPGRRARPSR 983593

Query: 154    PG 155
              P 
Sbjct: 983592 PA 983587



 Score = 34.3 bits (77), Expect = 0.58,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 29/60 (48%)
 Frame = -2

Query: 95      AFRFVSRPGRARSESETLERSPPQSPGPGKAGDAPNRRSGHVRGARVLSPPGRRARLSSP 154
               A R V RP R    + +  R+  +  GP ++   P RRSG  R AR  S    R R +SP
Sbjct: 1689684 ACRTVGRPSRRGRAAASSSRTAGRRAGPSRSTC*PTRRSGPWRRARP*SWASARRRATSP 1689505



 Score = 34.3 bits (77), Expect = 0.70,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 25/56 (44%)
 Frame = -2

Query: 101     RPGRARSESETLERSPPQSPGPGKAGDAPNRRSGHVRGARVLSPPGRRARLSSPGP 156
               RPGRAR  + T     P+ PGPG    A  RR          SPP   +R   PGP
Sbjct: 1986306 RPGRARPAARTPSPKTPRRPGPGAPCCAARRRPSQ-------SPPN--SRTPRPGP 1986166



 Score = 33.9 bits (76), Expect = 0.89,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = -3

Query: 117     PQSPGPGKAGDAPNRRSGHVRGARVLSPPGRRARLSSPGP 156
               P  P P + G+    R+GH RG     PPG R  L +  P
Sbjct: 2102378 PAGPAPPRGGEDAAARAGHPRGQARQGPPGARGALHAAEP 2102259



 Score = 32.3 bits (72), Expect = 2.4,   Method: Composition-based stats.
 Identities = 16/31 (51%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = -1

Query: 97      RFVSRPGRARS-ESETLERSPPQSPGPGKAG 126
               R V RPGRAR+ + +  ER+PPQ PG    G
Sbjct: 2015521 RGVERPGRARAVDGKEGERAPPQEPGDHHQG 2015429



 Score = 32.0 bits (71), Expect = 3.1,   Method: Composition-based stats.
 Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
 Frame = +3

Query: 114     RSPPQSPGPGKAGDAPNRRSGHVRGARVLSPPGRR---ARLSSP 154
               R+PP+S        +P  RS   RGA   S P RR   AR SSP
Sbjct: 1999785 RTPPRSAPWAPRARSPRARSPRARGASAASGPSRRRWPARRSSP 1999916



 Score = 31.6 bits (70), Expect = 3.8,   Method: Composition-based stats.
 Identities = 37/127 (29%), Positives = 44/127 (34%), Gaps = 12/127 (9%)
 Frame = +2

Query: 39      GPMTGCGRAGDPISHARGGVGGRGE--------RLPRGFARVVRVASEGSVRRXXXXXXX 90
                P   C  A D +     G G RG          LP G A + R AS G   R       
Sbjct: 1234946 APGVACPTARDCVFRRSSGDGARGPCPPADRRPPLPSGGAALRRSASRGRRHRRPASRAR 1235125

Query: 91      XXXX----AFRFVSRPGRARSESETLERSPPQSPGPGKAGDAPNRRSGHVRGARVLSPPG 146
                       A    +R G AR  +  L   P + P          RR+G   GAR   P G
Sbjct: 1235126 RRATASFNARAATARAGPARPPTAALRSLPGERPFDAL------RRAGAATGARRRVPDG 1235287

Query: 147     RRARLSS 153
                R RLS+
Sbjct: 1235288 ARLRLST 1235308


>scaffold_10
          Length = 1654512

 Score = 43.9 bits (102), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 79/342 (23%), Positives = 135/342 (39%), Gaps = 30/342 (8%)
 Frame = +1

Query: 394    KIKATNKKGQE-TYYTAAQFVIATGERP-RYLGIQGD------KEYCITSDDLFSLPYCP 445
              K + T K G   T       V+ATG R  R+ G+  D      +     SD +  L + P
Sbjct: 697975 KFRRTTKGGSAGTTVRGKHCVVATGSRAVRFDGLDYDGADAAGRRRVYDSDSVKGLSFLP 698154

Query: 446    GKTLVVGASYVALECAGFLAGFGLDVTVMVRSILLR------GFDQEMAEKVGSYMEQHG 499
               + ++VG   +A+E A   A    DVT++VRS  L       G D  +A  + + +   G
Sbjct: 698155 RRVVIVGGGIIAVEYARIFAALAADVTLVVRSADLPKSLRRVGIDAGLAGALQADLRDAG 698334

Query: 500    VKFLRKFIPVMVQQLEKGSPGKLKVLAKSTEGTETIEGVYNTVLLAIGRDSCTRKIGLEK 559
              V  L +       ++   +     V     +G  T+E   + +L A GR + TR +  + 
Sbjct: 698335 VDILFE------TEIAGAALAGAAVAVALRDG-RTLEA--DVLLTATGRAAVTRGVFDDA 698487

Query: 560    IGVK-INEKSGKIPVNDVEQTNVPYVYAVGDILEDKPELTPVAIQSGKLLAQRLFGASLE 618
                V  +   +G + V+   +T    V   GD++   P+L    I   +     ++G    
Sbjct: 698488 ALVDGLLAPNGDLLVDGELKTVHRAVSGAGDVV-GAPQLASTGIAQAEAAVDCVYGDGCA 698664

Query: 619    KCDY---------INVPTTVFTPLEYGCCGLSEEKAIEVYKKENLEIYHTLFWPLEWTVA 669
                D             P  ++T  E   CGL+ E A +      + + H        TV 
Sbjct: 698665 LGDVSPAGLLASTARYPVGIWTVPELAFCGLTAEAAADRGLDVVVGVAH-----YADTVR 698829

Query: 670    G--RENN----TCYAKIICNKFDHDRVIGFHILGPNAGEVTQ 705
              G  RE++    +C   ++     H  ++G H+ G +A E+  
Sbjct: 698830 GHVRESDASTRSCLKLVVARDAPHT-ILGVHLFGDDAAELVH 698952



 Score = 33.1 bits (74), Expect = 1.6,   Method: Composition-based stats.
 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
 Frame = +2

Query: 101    RPGRARSESETLERS---PPQSPGPGKAGDAPNRRSGHVRGARV 141
              RP R  ++ E L+ S   PPQ  GP + G    RR   +RG RV
Sbjct: 279218 RPARRAADRELLDHSCPVPPQDDGPAEGGGQGRRRVPPLRGRRV 279349



 Score = 32.3 bits (72), Expect = 2.4,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
 Frame = -1

Query: 99     VSRPGRARSESETLERS------PPQSPGPGKAGDAPNRRSGHVRGARVLSPPGRRARLS 152
              V+RP  +R+E  T ER       PP+S  P      P+ RSG  R  R   PP R     
Sbjct: 249693 VARPKISRNEWNTAERGAFRTLVPPRS-SPRATRGRPSTRSGPPRRCRWCPPPSRARSCG 249517

Query: 153    SP 154
              +P
Sbjct: 249516 AP 249511


>scaffold_641
          Length = 6574

 Score = 33.5 bits (75), Expect(2) = 0.003,   Method: Composition-based stats.
 Identities = 17/40 (42%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
 Frame = -2

Query: 176  RSRVVIFSKSYCPHSTRVKELFSSL-GVECNVLELDQVDD 214
            R  VV+FSKSY P++    +L  +L G+   V+ELDQ+ +
Sbjct: 6333 RDTVVVFSKSY*PYAQNTLKLLRALPGLRLEVMELDQMGE 6214



 Score = 27.7 bits (60), Expect(2) = 0.003,   Method: Composition-based stats.
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -1

Query: 218  VQEVLSEITNQKTVPNIFVNKVHVGGCDQ 246
            VQ++L   + + +VP +FVN   +GG D+
Sbjct: 6130 VQQLLKARSGRTSVPQVFVNDAFLGGNDE 6044


>scaffold_15
          Length = 987846

 Score = 41.6 bits (96), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 36/65 (55%)
 Frame = -2

Query: 179    VVIFSKSYCPHSTRVKELFSSLGVECNVLELDQVDDGARVQEVLSEITNQKTVPNIFVNK 238
              V +++ + CP   + KEL    G     + LD+ +DGA ++  L + T + +VP +++  
Sbjct: 741398 VTMYTFTSCPFCKKAKELLDDKGATYTEIALDEREDGAALRARLGKRTGRTSVPAVWIGD 741219

Query: 239    VHVGG 243
               +VGG
Sbjct: 741218 EYVGG 741204



 Score = 34.3 bits (77), Expect = 0.73,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 11/68 (16%)
 Frame = +2

Query: 176    RSRVVIFSKSYCPHSTRVKELFSSL-GVECNVLELDQVDDGA----------RVQEVLSE 224
              R  VV+FSKSY P++    +L  +L G+   V+ELDQ+ +            RV+ +L  
Sbjct: 211343 RDTVVVFSKSY*PYAQNTLKLLRALPGLRLEVMELDQMGEPRASPRPGGSPFRVRALLPT 211522

Query: 225    ITNQKTVP 232
                +Q T P
Sbjct: 211523 RDSQATAP 211546


>scaffold_5
          Length = 3000003

 Score = 41.2 bits (95), Expect = 0.005,   Method: Composition-based stats.
 Identities = 32/92 (34%), Positives = 43/92 (46%), Gaps = 7/92 (7%)
 Frame = -3

Query: 407    YTAAQFVIATGERPRYLGIQGDKEY-------CITSDDLFSLPYCPGKTLVVGASYVALE 459
              +T +  V+ATG  PR+LG  G++E        C T D  F   Y     +VVG    A+E
Sbjct: 719809 FTTSALVVATGASPRWLGAPGERELLSRGVHTCATCDGYF---YRDRDVVVVGGGDTAME 719639

Query: 460    CAGFLAGFGLDVTVMVRSILLRGFDQEMAEKV 491
               A FLA     V V+ R    R   + MA +V
Sbjct: 719638 QALFLARIANRVYVVHRKNSFRA-SKAMATRV 719546



 Score = 33.1 bits (74), Expect = 1.3,   Method: Composition-based stats.
 Identities = 17/39 (43%), Positives = 20/39 (51%)
 Frame = -2

Query: 45      GRAGDPISHARGGVGGRGERLPRGFARVVRVASEGSVRR 83
               G   +P+   R    GRGE  P G A +VRVA E   RR
Sbjct: 2258000 GALDEPLEERRAQALGRGEGAPHGGAELVRVAREDDARR 2257884



 Score = 32.3 bits (72), Expect = 2.8,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 26/52 (50%)
 Frame = +1

Query: 16      LTSRPVASTHSPLILDMCPHLNNGPMTGCGRAGDPISHARGGVGGRGERLPR 67
               LT RP A+ H PL      H ++G +    RAG     A G  GGRG  +PR
Sbjct: 2087647 LTRRPRAA-HYPL-----QHPSDGELQSSSRAGGQEERAHGAPGGRGSAVPR 2087784



 Score = 32.0 bits (71), Expect = 3.5,   Method: Composition-based stats.
 Identities = 15/27 (55%), Positives = 17/27 (62%)
 Frame = -2

Query: 39     GPMTGCGRAGDPISHARGGVGGRGERL 65
              GP  G  RAGD +   R GVGGR +RL
Sbjct: 125579 GPRRGLRRAGDRVPDRRRGVGGRAQRL 125499



 Score = 31.6 bits (70), Expect = 4.1,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 25/62 (40%), Gaps = 9/62 (14%)
 Frame = -3

Query: 102     PGRARSESETLERSPPQSPGPGK------AGD---APNRRSGHVRGARVLSPPGRRARLS 152
               PGRAR       R P   P PG       AGD    P +  GH RG      PG++ R  
Sbjct: 2113636 PGRARGPRARQVRVPDAEPAPGARGPRDGAGDDPGGPRQARGHARGPH-RREPGQQTRAK 2113460

Query: 153     SP 154
                P
Sbjct: 2113459 FP 2113454



 Score = 30.8 bits (68), Expect = 8.1,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 7/67 (10%)
 Frame = +1

Query: 97      RFVSRP----GRARSESETLERSPPQSPGPGKAGDAPNRRSGHVRGARVLSPPGRRAR-- 150
               R  +RP    GRA + +     S P +P PG+A  AP RR+  +  A   +  G  A   
Sbjct: 2666380 RTATRPRTARGRAATTTTARPSSAPTAPTPGRA--APRRRTSAITPAAATTRRGTSAASR 2666553

Query: 151     -LSSPGP 156
                 ++PGP
Sbjct: 2666554 PRTAPGP 2666574


>scaffold_2
          Length = 3465789

 Score = 40.0 bits (92), Expect = 0.010,   Method: Composition-based stats.
 Identities = 23/60 (38%), Positives = 31/60 (51%)
 Frame = -1

Query: 97      RFVSRPGRARSESETLERSPPQSPGPGKAGDAPNRRSGHVRGARVLSPPGRRARLSSPGP 156
               R+ SRP ++R +   L      +P P + G +  RR+    G   L  PGRRAR SSP P
Sbjct: 3339024 RWPSRPPKSRRD-RALTALSS*TPRPDRLGASGTRRTPPASGPPPLGRPGRRARFSSPRP 3338848



 Score = 33.5 bits (75), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/46 (43%), Positives = 23/46 (50%)
 Frame = -2

Query: 105   ARSESETLERSPPQSPGPGKAGDAPNRRSGHVRGARVLSPPGRRAR 150
             AR    +  R P   PGP   G AP  +  +VR  R  SPPG RAR
Sbjct: 31481 ARGPLPSDPRRPAL*PGPDPGGAAPPAQLMYVR--RAASPPGSRAR 31350



 Score = 33.1 bits (74), Expect = 1.3,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 4/59 (6%)
 Frame = -2

Query: 101     RPGRARSESETLERSPPQSPGPGKAGDAPNRRSGHVRGARVLS----PPGRRARLSSPG 155
               RPG ARS +    RS   S G  + G  P  R+G     R  +     PG R+R   P 
Sbjct: 2911046 RPGPARSAAGAGSRSRRSSAGASRRGPGPGSRAGATSRPRTFARAPIAPGPRSRCPRPA 2910870



 Score = 33.1 bits (74), Expect = 1.4,   Method: Composition-based stats.
 Identities = 32/111 (28%), Positives = 38/111 (34%), Gaps = 2/111 (1%)
 Frame = -1

Query: 47      AGDPISHARGGVGGRGERLPRGFARVVRVASEGSVRRXXXXXXXXXXXAFRFVSRPGRAR 106
               AG P S  R   G R  R+P  F  +   A     R              R V    R  
Sbjct: 1837350 AGSPRSARRTPQGARDHRIP*PFVGIGTTAKRQRARTAARS---------RHVQARARPA 1837198

Query: 107     SESETLERSPPQSPGPGKAGDAPNRRSG--HVRGARVLSPPGRRARLSSPG 155
                 +    R       P + G AP RR G   +R  R    P RRAR S+ G
Sbjct: 1837197 EVAPERRRVCSVRRVPWRLGAAPRRRHGLRALRALRGSGAPPRRARPSAAG 1837045



 Score = 30.8 bits (68), Expect = 7.7,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 22/54 (40%)
 Frame = +2

Query: 100     SRPGRARSESETLERSPPQSPGPGKAGDAPNRRSGHVRGARVLSPPGRRARLSS 153
               + P  ARS      R P  SPG G A      R     GAR    P  R RL+S
Sbjct: 1927811 ASPSPARSRGRPRARGPSSSPGTGPAPATSAPRPSR*SGARA---PAARGRLAS 1927963



 Score = 30.8 bits (68), Expect = 8.0,   Method: Composition-based stats.
 Identities = 30/109 (27%), Positives = 37/109 (33%)
 Frame = -1

Query: 47      AGDPISHARGGVGGRGERLPRGFARVVRVASEGSVRRXXXXXXXXXXXAFRFVSRPGRAR 106
               A  P  H+  GVG R   LP G   +   A+E    R             R   R GR  
Sbjct: 2738703 AHTPDPHSPAGVGARAPELPNGRVVLRPPAAEQGQERGGHEPAPGVRAQAR-PRRHGRGL 2738527

Query: 107     SESETLERSPPQSPGPGKAGDAPNRRSGHVRGARVLSPPGRRARLSSPG 155
                        PP+   P +A D P+             P GRRA+L   G
Sbjct: 2738526 RHHRRAALPPPRGLVPRRAPDGPD-------------PRGRRAQLRGQG 2738419


>scaffold_13
          Length = 1338096

 Score = 40.0 bits (92), Expect = 0.012,   Method: Composition-based stats.
 Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
 Frame = +3

Query: 183     SKSYCPHSTRVKELFSSLGVE---CNVLELDQVDDGARVQEVLSEITNQKTVPNIFVNKV 239
               ++  C  S +V  +  + GVE    NVLE D + +G      + E +   T+P ++V   
Sbjct: 1041150 ARPQCGFSQQVCRILHATGVEFASVNVLEDDALREG------IKEFSEWPTIPQLYVGGE 1041311

Query: 240     HVGGCDQTFQAYQSGLLQK 258
                VGGCD   +++QSG L +
Sbjct: 1041312 FVGGCDIVTESFQSGELDE 1041368



 Score = 31.2 bits (69), Expect = 5.8,   Method: Composition-based stats.
 Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
 Frame = -3

Query: 118     QSPGPGKA-----GDAPNRRSGHVRGARVLSPPGRRARLSSPGP 156
               ++P PG+A       AP R     R AR  SPP RR R S+P P
Sbjct: 1215685 RAPSPGRATRTGPATAPPRAR---RCARSSSPPARRPRGSAPAP 1215563



 Score = 30.8 bits (68), Expect = 6.6,   Method: Composition-based stats.
 Identities = 30/100 (30%), Positives = 36/100 (36%), Gaps = 1/100 (1%)
 Frame = +1

Query: 55     RGGVG-GRGERLPRGFARVVRVASEGSVRRXXXXXXXXXXXAFRFVSRPGRARSESETLE 113
              R G G GR  R PR  ARVVR  + G                 R   R  R    +   +
Sbjct: 401911 RAGAGPGRAPRPPR--ARVVRGHASGHALPARPERGPEAAPVHRAGPREAREMPAAGRAD 402084

Query: 114    RSPPQSPGPGKAGDAPNRRSGHVRGARVLSPPGRRARLSS 153
                P +  G  +    P  R G     RV  PP  RARL +
Sbjct: 402085 VGPRRRRGLQRRDVPPRARQGRQAVRRVDDPPAERARLRA 402204



 Score = 30.4 bits (67), Expect = 8.7,   Method: Composition-based stats.
 Identities = 36/128 (28%), Positives = 42/128 (32%), Gaps = 6/128 (4%)
 Frame = -3

Query: 19     RPVASTHSPLILDMCPHLNNGPMTGCGRAGDPISHARGGVGGRGERLPRGFARVVRVASE 78
              RP    H    L   PH +    T   R  +    ARG +G  G  L RG  R     SE
Sbjct: 309052 RPARPAHHLRRLPGAPHRHARAQTARRRGAE---GARGRIGDPGGELGRGSRRAALQRSE 308882

Query: 79     G------SVRRXXXXXXXXXXXAFRFVSRPGRARSESETLERSPPQSPGPGKAGDAPNRR 132
              G       VR                +  PGR R   E   R       PG A  A  R+
Sbjct: 308881 GLQGRARRVRSQDGRGHRRGGRRRPRLLHPGRGRVRGELRAR---HLDAPGAAARAQVRQ 308711

Query: 133    SGHVRGAR 140
                 VR A+
Sbjct: 308710 RREVRSAQ 308687


>scaffold_35
          Length = 443549

 Score = 38.9 bits (89), Expect = 0.027,   Method: Composition-based stats.
 Identities = 32/115 (27%), Positives = 44/115 (38%)
 Frame = +2

Query: 40     PMTGCGRAGDPISHARGGVGGRGERLPRGFARVVRVASEGSVRRXXXXXXXXXXXAFRFV 99
              PMT   R   P+    GG      R PR   R  ++++ G   R           A R  
Sbjct: 303110 PMTTT-RPSSPVQEPSGG------RSPR---RRSKISAGGVAARHASASGKRAKDASRSA 303259

Query: 100    SRPGRARSESETLERSPPQSPGPGKAGDAPNRRSGHVRGARVLSPPGRRARLSSP 154
                PGR +         PP+ P    A D     +G VR   VL PP  +A+++ P
Sbjct: 303260 VDPGRPK---------PPKEPSAMAAADRGASVAGSVRYQLVLPPPASKAKIARP 303397



 Score = 32.7 bits (73), Expect = 2.0,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 34/96 (35%), Gaps = 3/96 (3%)
 Frame = -3

Query: 56     GGVGGRG---ERLPRGFARVVRVASEGSVRRXXXXXXXXXXXAFRFVSRPGRARSESETL 112
               G GGRG   +   RG  + +       +RR             R    PG  R     L
Sbjct: 139761 AGEGGRGPGAQAAHRGRVQELDGRGAADLRRVHGEAAQVAVADLRVA--PGLPRVARRGL 139588

Query: 113    ERSPPQSPGPGKAGDAPNRRSGHVRGARVLSPPGRR 148
              E      P P  AG A  RR G     RV  PPGRR
Sbjct: 139587 E------PAPAPAGHAHGRRRGQRALDRVRGPPGRR 139498


>scaffold_12
          Length = 1412611

 Score = 38.1 bits (87), Expect = 0.049,   Method: Composition-based stats.
 Identities = 63/246 (25%), Positives = 92/246 (37%), Gaps = 7/246 (2%)
 Frame = +1

Query: 371    YRLSLREKAVAYVNSYGEFVEHHKIKATNKKGQETYYTAAQFVIATGERPRYLGIQGDKE 430
              Y    R   V  V++ GEF   +   AT K        A   V+ATG   R     G+ E
Sbjct: 981778 YGTDYRRAQVFMVDTDGEFKMVYTPDATIK--------ARALVLATGAMGRPPSFAGEGE 981933

Query: 431    Y-------CITSDDLFSLPYCPGKTLVVGASYVALECAGFLAGFGLDVTVMVRSILLRGF 483
              Y       C T D  F   Y   +  VVG    A+E A FL  F   V   + S   +  
Sbjct: 981934 YLGKGVSYCATCDGAF---YRESEVAVVGTHTDAIEEATFLTKFASTVH-WITSNEPKAD 982101

Query: 484    DQEMAEKVGSYMEQHGVKFLRKFIPVMVQQLEKGSPGKLKVLAKSTEGTETIEGVYNTVL 543
              D E  E +G    +H  +         ++ +E  + G   V  K     E +  V    +
Sbjct: 982102 DAEAWELIGLDNVKHWPR-------TAMKAVEGDASGVTGVTIKPRGEDELLLPVEGCFI 982260

Query: 544    LAIGRDSCTRKIGLEKIGVKINEKSGKIPVNDVEQTNVPYVYAVGDILEDKPELTPVAIQ 603
                 G    T  +   ++  +     G + V+D   T++P VYA+GDI     +   VA  
Sbjct: 982261 YMSGSKPITDFLQTGQVEFR---DDGGVAVDDNMATSMPGVYAIGDIRNTPFKQVVVAAS 982431

Query: 604    SGKLLA 609
               G + A
Sbjct: 982432 DGCIAA 982449



 Score = 31.2 bits (69), Expect = 5.3,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 30/72 (41%), Gaps = 11/72 (15%)
 Frame = +2

Query: 95     AFRFVSRPGRARSESE-------TLERSPPQSPGPGKAGDAPNRRS----GHVRGARVLS 143
              A R  S   RAR  ++         E +P   P        P RR+    G +RG+R   
Sbjct: 140666 ALRLASDSSRARIPADGPMLGPRPRESAPQTRPYRRPVARRPCRRAASGRGQLRGSRFAR 140845

Query: 144    PPGRRARLSSPG 155
               P R ARL SPG
Sbjct: 140846 GPRRPARLDSPG 140881



 Score = 31.2 bits (69), Expect = 6.3,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = +3

Query: 21     VASTHSPLILDMCPHLNNGPMTGCGRAG-DPISHARGGVGGRGERLPRGFARVVRVASEG 79
              +AS H P + + C       M G GRAG      A  GVGGR +R+P    R  R  +E 
Sbjct: 566223 IASLHRP-VGEGCRRSAERAMWGRGRAGWATWRSADEGVGGRRDRVPTSGRRGARAGTEA 566399

Query: 80     SV 81
               V
Sbjct: 566400 GV 566405


>scaffold_6
          Length = 2755913

 Score = 37.0 bits (84), Expect = 0.093,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
 Frame = -2

Query: 409    AAQFVIATGERP-RYLGIQGDKEYCITSDDLFSLPYCPGKTLVVGASYVALECAGFLAGF 467
               A+ ++  G  P R  G+  D      +D + +L + P   ++VG+  +A+E A      
Sbjct: 944947 GAKLLVCCGSVPMRVGGVPFDGRRVFDADSINTLGFLPKSVVIVGSGIIAIEYAMIFRKL 944768

Query: 468    GLDVTVMVRSILLRGFDQ 485
              G  VT++VRS +    D+
Sbjct: 944767 GAAVTMLVRSSMTSALDR 944714



 Score = 35.8 bits (81), Expect = 0.25,   Method: Composition-based stats.
 Identities = 23/56 (41%), Positives = 26/56 (46%)
 Frame = +1

Query: 100    SRPGRARSESETLERSPPQSPGPGKAGDAPNRRSGHVRGARVLSPPGRRARLSSPG 155
              SRP  A   S    R+  +S GP  A  +  RRS   R AR  SP GRRA    P 
Sbjct: 584908 SRPTAATKTSSGDWRTSTRSSGPWAARTSSARRSPAPRTARSSSPSGRRAGPRPPA 585075



 Score = 32.0 bits (71), Expect = 3.2,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 8/55 (14%)
 Frame = +1

Query: 101    RPGRARSESET---LERSPPQSPGPGKAGDAPNRRSGHV-----RGARVLSPPGR 147
              R GRA  + E+   L   PP+    G++G  PN R GHV     RG R ++  GR
Sbjct: 767125 RGGRAPGQLESDAPLGSGPPREAPSGRSGTIPNLRKGHVGPPTLRGRRGVAGAGR 767289



 Score = 30.8 bits (68), Expect = 7.2,   Method: Composition-based stats.
 Identities = 26/67 (38%), Positives = 33/67 (49%)
 Frame = +1

Query: 7       LVSGKRRMHLTSRPVASTHSPLILDMCPHLNNGPMTGCGRAGDPISHARGGVGGRGERLP 66
               L    +R  +  R VA+   P  L + P L++GP    GRAG     ARG V  R  RLP
Sbjct: 1090918 LRQAAQRRDVRERRVAA-ERPRPLRLHPRLSHGP----GRAG----RARGQVPRRAARLP 1091070

Query: 67      RGFARVV 73
               R   RV+
Sbjct: 1091071 RDGLRVL 1091091


>scaffold_23
          Length = 674037

 Score = 35.0 bits (79), Expect = 0.42,   Method: Composition-based stats.
 Identities = 30/100 (30%), Positives = 44/100 (44%), Gaps = 2/100 (2%)
 Frame = +2

Query: 124    KAGDA--PNRRSGHVRGARVLSPPGRRARLSSPGPXXXXXXXXXXXXHLVGLIERSRVVI 181
              + GDA  P R  GH R AR+LSP G  A LS P               LV  +E  + ++
Sbjct: 377738 RPGDALEPRRGCGHRRAARLLSPQGAMALLSLP----------RGCLSLVSRVE--KCLV 377881

Query: 182    FSKSYCPHSTRVKELFSSLGVECNVLELDQVDDGARVQEV 221
              F +    HS+RV +    + + C  +   +   G R Q +
Sbjct: 377882 FFRDAGAHSSRVGDDSGGMSI-CTPMPASRSSSGLRRQSL 377998


>scaffold_318
          Length = 8455

 Score = 34.7 bits (78), Expect = 0.44,   Method: Composition-based stats.
 Identities = 23/55 (41%), Positives = 28/55 (50%)
 Frame = -2

Query: 100  SRPGRARSESETLERSPPQSPGPGKAGDAPNRRSGHVRGARVLSPPGRRARLSSP 154
            +RPGRA S   T   S P+ P P ++  AP  RS     A   + PG  AR SSP
Sbjct: 3189 TRPGRASSPPSTRATSAPRRPPPSRSDRAPP-RSARPCSAGGTAWPGCPARGSSP 3028


>scaffold_16
          Length = 966663

 Score = 34.7 bits (78), Expect = 0.47,   Method: Composition-based stats.
 Identities = 55/220 (25%), Positives = 85/220 (38%), Gaps = 31/220 (14%)
 Frame = -1

Query: 404    ETYYTAAQFVIATGERPRYLGIQGDKEY-------CITSDDLFSLPYCPGKTLVVGASYV 456
              E   +A   ++ATG   R+LG+ G+ E+       C T D      Y      V+G    
Sbjct: 736617 EANISAHTLIVATGADSRWLGVAGESEFKGGGVSSCATCDGFL---YRDRDVAVIGGGDT 736447

Query: 457    ALECAGFLAGFGLDVTVMVRSILLRGFDQEMAEKV------------------GSYME-- 496
              A+E A  LA     VTV+ R    R   + MA +V                  G++ E  
Sbjct: 736446 AMEDALVLARTSAKVTVVHRRDAFRA-SKAMATRVLEHPKIEVRWNATVASFSGTHEELE 736270

Query: 497    -QHGVKFLRKFIPVMVQQLEKGSPGKLKVLAKSTEGTETIEGVYNTVLLAIGRDSCTRKI 555
               + GVK +     V +     G    L V A                 +AIG D  T K+
Sbjct: 736269 MEDGVKDIATLTRVHLTSTASGEASALDVAA---------------AFVAIGHDPNT-KL 736138

Query: 556    GLEKIGVKINEKSGKIPVNDVE---QTNVPYVYAVGDILE 592
                +++ VK    SG + +   +   + +VP V+A GD+ +
Sbjct: 736137 FADQLVVK---PSGYLELAGSKFATELSVPGVFAAGDVAD 736027


>scaffold_21
          Length = 716958

 Score = 33.5 bits (75), Expect = 0.99,   Method: Composition-based stats.
 Identities = 43/163 (26%), Positives = 53/163 (32%), Gaps = 19/163 (11%)
 Frame = -1

Query: 3      HVHRLVSGKRRMHLTSRPVASTHSPLILDMCPHLNNGPMTGCGRAGDPISHARGGVGGRG 62
              H  R +S +      SR +  T  P+  D   H    P    GRA  P    + G GGR 
Sbjct: 150357 HRQRQLSTRGSQRQLSRALRRT--PVHRDHVSHRRPAPRAPAGRAEPPARRVQHGAGGR- 150187

Query: 63     ERLPRGFARV--------------VRVASEGSVR----RXXXXXXXXXXXAFRFVSRPGR 104
               R PRG  R               +R A  G VR    R             R V   G 
Sbjct: 150186 -RPPRGDGRAAEHARGQDAGPPRHLRAAPHGPVRGGPDRDARDARLRVPRRARVVDGAGE 150010

Query: 105    ARSESETLERSPP-QSPGPGKAGDAPNRRSGHVRGARVLSPPG 146
                 +     R PP +  G      AP       +GA+V   PG
Sbjct: 150009 HPPDGAARAREPPVRGHGRDGGAGAPRDHGEEEQGAQVHDGPG 149881



 Score = 32.0 bits (71), Expect = 3.2,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 26/59 (44%)
 Frame = -2

Query: 95     AFRFVSRPGRARSESETLERSPPQSPGPGKAGDAPNRRSGHVRGARVLSPPGRRARLSS 153
              A R+  R G AR E           P  G+   AP  R G  RGAR   PPGRR+   S
Sbjct: 222923 ARRWGCRGGPARVE-----------PRRGRVRPAPRGRPGSPRGARARVPPGRRSEPPS 222780


>scaffold_4
          Length = 3024044

 Score = 33.5 bits (75), Expect = 1.1,   Method: Composition-based stats.
 Identities = 32/110 (29%), Positives = 45/110 (40%), Gaps = 2/110 (1%)
 Frame = -2

Query: 43    GCGRAGDPISHARGGVGGRGERLPRGFARVVRVASEGSVRRXXXXXXXXXXXAF-RFVSR 101
             G  R+G+P   A G  GGR  R      ++V + S G++R+           A  R V+R
Sbjct: 95407 GAQRSGEPPEGAHGLPGGRWSRRGEVAVKLVEIDSCGALRQRGSAQTRAPRRALVRAVAR 95228

Query: 102   PGRARSES-ETLERSPPQSPGPGKAGDAPNRRSGHVRGARVLSPPGRRAR 150
             P   R    E L     +  G   A +AP  R    +  R     GRR+R
Sbjct: 95227 PSPLRRHGHEALLGRELRRRGTRAAEEAPEARPPGRQQQRRRETDGRRSR 95078



 Score = 32.7 bits (73), Expect = 1.8,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 26/54 (48%)
 Frame = -3

Query: 97      RFVSRPGRARSESETLERSPPQSPGPGKAGDAPNRRSGHVRGARVLSPPGRRAR 150
               RFV  PGR RS   +  R+ P +      G    RRS  + G   L+P  +RAR
Sbjct: 1166907 RFVPIPGRPRSPPVSGVRAAPSAFHK*PRGTRSERRSADLPGVTQLAPGPKRAR 1166746



 Score = 32.3 bits (72), Expect = 2.2,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 24/51 (47%)
 Frame = +3

Query: 100     SRPGRARSESETLERSPPQSPGPGKAGDAPNRRSGHVRGARVLSPPGRRAR 150
               SRP R  S +    RSP  +  P     AP R     RG    SPPGRR+R
Sbjct: 1384182 SRPSRRSSAA----RSPAGTAAPTAGRSAPRRS----RGTCATSPPGRRSR 1384310



 Score = 32.3 bits (72), Expect = 2.5,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 24/58 (41%)
 Frame = -1

Query: 98      FVSRPGRARSESETLERSPPQSPGPGKAGDAPNRRSGHVRGARVLSPPGRRARLSSPG 155
               FV R G  R     +  + P+ P P + GD P       RG     PPGR  R   PG
Sbjct: 2323793 FVLRGGAGRPRHREVAGALPRVP-PARGGDLPA-----ARGPEAREPPGRARRAGGPG 2323638



 Score = 32.0 bits (71), Expect = 3.2,   Method: Composition-based stats.
 Identities = 23/58 (39%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
 Frame = -1

Query: 100     SRPGRARSESETLERSPPQSPGPGKAGDAPNRRSGHVRGA--RVLSPPGRRARLSSPG 155
               +R  RA + +     S P    P + G A  R +G  R A  R  SP  RRAR SSPG
Sbjct: 1765862 ARSPRA*APATRRRPSTPAPSSPRRRGAAAPRSTGASRAAPCRSSSPSTRRARCSSPG 1765689



 Score = 32.0 bits (71), Expect = 3.3,   Method: Composition-based stats.
 Identities = 24/61 (39%), Positives = 28/61 (45%), Gaps = 9/61 (14%)
 Frame = +2

Query: 102     PGRAR--SESETLERSPPQSPGP-GKAGDAP------NRRSGHVRGARVLSPPGRRARLS 152
               PG A   S S +L RS P SP P G    +P      NR S   R  R   PP  RAR+ 
Sbjct: 2925209 PGHATEFSTSASLARSWPPSPRPDGPTASSPHLVPRSNRLSTATRPCRTRRPPSARARVE 2925388

Query: 153     S 153
               +
Sbjct: 2925389 T 2925391



 Score = 31.6 bits (70), Expect = 4.8,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
 Frame = +2

Query: 101     RPGRARSESETLERSPPQSPG-PGKAGDAPNRRSGHVRGARVLSPPG--RRARLSSPG 155
               RP R R         P +  G P   G AP    GHV+GA  L+PP   RR  +++PG
Sbjct: 1658783 RPARGRVHRGRGAEPPRRFSGRPVARGGAPGH-GGHVQGAGALAPPALPRRGPVAAPG 1658953



 Score = 31.2 bits (69), Expect = 5.0,   Method: Composition-based stats.
 Identities = 20/48 (41%), Positives = 25/48 (52%)
 Frame = -3

Query: 26      SPLILDMCPHLNNGPMTGCGRAGDPISHARGGVGGRGERLPRGFARVV 73
               +PL L +C H +        R GDP S ARG   GR  RLP G  R++
Sbjct: 2648343 APLTLCLCRHAHPAE-----RLGDP-SRARGRAIGRDARLPHGLVRLL 2648218



 Score = 31.2 bits (69), Expect = 5.8,   Method: Composition-based stats.
 Identities = 19/40 (47%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = +3

Query: 96      FRFVSRPGRARSESETLER--SPPQSPGPGKAGDAPNRRS 133
               F   S PGRA++E    E+  SPPQSPG G    A  R S
Sbjct: 1259541 FERSSDPGRAKTELVPSEQRHSPPQSPGSGGMRHAAPRSS 1259660



 Score = 30.8 bits (68), Expect = 6.4,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 27/59 (45%), Gaps = 7/59 (11%)
 Frame = -3

Query: 97     RFVSRPGRARSESETLER--SPPQSPGPGKA-----GDAPNRRSGHVRGARVLSPPGRR 148
              R ++ P RAR     L R    P  PGP +A     GD P     H +G  V  PPGRR
Sbjct: 308532 RGLAEPQRARDGGVHLRRLRHLPPVPGPAEARRLEGGDGP-----HGQGPVVAPPPGRR 308371



 Score = 30.8 bits (68), Expect = 7.3,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
 Frame = -2

Query: 100     SRPGRARSESETLERSPPQSPGP--GKAGDAPNRRSGHVRGARVLSPPGRRAR 150
               + P R  S +      PP  PGP  G+      R  G VRGAR     G RAR
Sbjct: 2899432 TTPRRRHSATSRAS*RPPAGPGPARGRGAREVRRAPGPVRGARGRHGLGARAR 2899274



 Score = 30.4 bits (67), Expect = 9.7,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 22/51 (43%)
 Frame = +2

Query: 100    SRPGRARSESETLERSPPQSPGPGKAGDAPNRRSGHVRGARVLSPPGRRAR 150
              SR GR+R       R  P   GP ++   P RR G  R     + PGR  R
Sbjct: 498689 SRAGRSRGAGTR*SRRRPSKRGPARSAAPPARRRGACRPRTSPATPGRGRR 498841


>scaffold_63
          Length = 129949

 Score = 33.1 bits (74), Expect = 1.3,   Method: Composition-based stats.
 Identities = 23/60 (38%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
 Frame = -1

Query: 100   SRPGRARSESETLERSPPQSPGPG--KAGD--APNRRSGHVRGARVLSPPGRRARLSSPG 155
             +R GRA +E      +PPQ  G G  +AGD  A  R SG  R     +P  RR   + PG
Sbjct: 23218 ARDGRADAEGRVPRVAPPQRRGLGAERAGDRGAGRRESGPARAPGRRAPGSRRGAAAPPG 23039


>scaffold_19
          Length = 762245

 Score = 33.1 bits (74), Expect = 1.5,   Method: Composition-based stats.
 Identities = 19/40 (47%), Positives = 22/40 (55%)
 Frame = -3

Query: 111    TLERSPPQSPGPGKAGDAPNRRSGHVRGARVLSPPGRRAR 150
              +LE +  Q PG   AGD P RR+  V G      PGRRAR
Sbjct: 290862 SLENAAGQPPG---AGDGPARRAQPVPGGPGARAPGRRAR 290752


>scaffold_743
          Length = 3034

 Score = 32.7 bits (73), Expect = 1.7,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 26/54 (48%)
 Frame = +3

Query: 97   RFVSRPGRARSESETLERSPPQSPGPGKAGDAPNRRSGHVRGARVLSPPGRRAR 150
            RFV  PGR RS   +  R+ P +      G    RRS  + G   L+P  +RAR
Sbjct: 1590 RFVPIPGRPRSPPVSGVRAAPSAFHK*PRGTRSERRSADLPGVTQLAPGPKRAR 1751


>scaffold_17
          Length = 902323

 Score = 32.7 bits (73), Expect = 1.7,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 26/54 (48%)
 Frame = +3

Query: 97     RFVSRPGRARSESETLERSPPQSPGPGKAGDAPNRRSGHVRGARVLSPPGRRAR 150
              RFV  PGR RS   +  R+ P +      G    RRS  + G   L+P  +RAR
Sbjct: 596343 RFVPIPGRPRSPPVSGVRAAPSAFHK*PRGTRSERRSADLPGVTQLAPGPKRAR 596504


>scaffold_26
          Length = 549629

 Score = 32.3 bits (72), Expect = 2.2,   Method: Composition-based stats.
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -3

Query: 326    HQAALLGQALCDSRKFGWEYNQQVRHN 352
              H A LLG+A C S  + W Y Q V ++
Sbjct: 177117 HNARLLGEACCRSENYAWRYRQLVEYH 177037


>scaffold_181
          Length = 12941

 Score = 32.3 bits (72), Expect = 2.4,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
 Frame = +2

Query: 99   VSRPGRARSESETLERSPPQSPGPGKAGDAPNRRSGHV--RGARVLSPP---GRRARLSS 153
            V R GRARS  +   R   +   PG+ G   +R  G    RG R ++P    G+ AR  S
Sbjct: 7139 VGRAGRARSRLDRFVRRELRPAAPGRGGSGHDREGGASPGRGRRAIAPSEPGGKEARAPS 7318

Query: 154  PGP 156
              P
Sbjct: 7319 GEP 7327


>scaffold_56
          Length = 168398

 Score = 32.0 bits (71), Expect = 2.9,   Method: Composition-based stats.
 Identities = 37/114 (32%), Positives = 43/114 (37%), Gaps = 7/114 (6%)
 Frame = +1

Query: 48    GDPISHARGGVGGRGERLPRGFAR-VVRVASEGSVRRXXXXXXXXXXXAFRFVSRPGRAR 106
             GDP+    GG  G  ER   G A  +V    E S  R             R+  R   + 
Sbjct: 27982 GDPLLLVGGGAAGEEER---GDAHDLVMNLKEASAYRDARNRS-------RYRERARASL 28131

Query: 107   SESETLERSPPQ---SPGPGKAGDAPNRRSGHVRGARVLSPPGRR---ARLSSP 154
             S   T    PP    SP  G   D+P R+    RG R LSP   R   A L SP
Sbjct: 28132 SGHRTPRTLPPNGLSSPVNGLPTDSPQRQVRPQRGQRYLSPAAPRDGAASLRSP 28293


>scaffold_154
          Length = 12440

 Score = 31.6 bits (70), Expect = 4.5,   Method: Composition-based stats.
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = +1

Query: 122  PGKAGDAPNRRSGHVRGARVLSPPGRRARLSSPGP 156
            P ++ +A  RR G  RGAR L      ARL  PGP
Sbjct: 2674 PAQSAEAQARREGQ-RGARALPQAAAEARLPRPGP 2775


>scaffold_22
          Length = 725242

 Score = 31.6 bits (70), Expect = 4.5,   Method: Composition-based stats.
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = -1

Query: 103    GRARSESETLERSPPQSPGPGKAGDAPNRRSGHVRGAR 140
               RA +ES   ER+P  S GPG+    P   + HV G R
Sbjct: 676465 ARAVNESVFCERAPRHSSGPGRWAGCPRACTLHVAGRR 676352


>scaffold_72
          Length = 80529

 Score = 31.2 bits (69), Expect = 4.9,   Method: Composition-based stats.
 Identities = 28/105 (26%), Positives = 36/105 (34%)
 Frame = +2

Query: 52    SHARGGVGGRGERLPRGFARVVRVASEGSVRRXXXXXXXXXXXAFRFVSRPGRARSESET 111
             + +R    G G+  PR    V    + G  R            A+     PGR       
Sbjct: 15440 TSSRPDANGPGDSTPRARGTVYTHGAHGGARTWPWATRGKGRDAWY----PGRRGVRDAG 15607

Query: 112   LERSPPQSPGPGKAGDAPNRRSGHVRGARVLSPPGRRARLSSPGP 156
                  P + G   AG  P R +G  R     SPPGR    + PGP
Sbjct: 15608 SGARGPATRGGRAAG--PTRSNGRPRRGERSSPPGRSHHGTRPGP 15736


>scaffold_39
          Length = 370504

 Score = 31.2 bits (69), Expect = 5.8,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 26/62 (41%), Gaps = 7/62 (11%)
 Frame = -3

Query: 102   PGRARSESETLERSPPQSPGPGKAG-------DAPNRRSGHVRGARVLSPPGRRARLSSP 154
             P RAR  +    R+P   PG G A          P  R+GH  G    + PG  AR  + 
Sbjct: 82595 PARARHAARHSARAPGHGPGTGHAARHGPGTRHGPRARAGHGPG----TWPGTAARTVAQ 82428

Query: 155   GP 156
             GP
Sbjct: 82427 GP 82422


>scaffold_612
          Length = 6126

 Score = 31.2 bits (69), Expect = 6.2,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
 Frame = +2

Query: 99  VSRPGRARSESETLERSPPQSPGPGKAGDAPNRRSGHV--RGARVLSPP---GRRAR 150
           V R GRARS  +   R   +   PG+ G   +R  G    RG R ++P    G+ AR
Sbjct: 737 VGRAGRARSRLDRFVRRELRPAAPGRGGSGHDREGGASPGRGRRAIAPSEPGGKEAR 907


>scaffold_57
          Length = 163641

 Score = 30.8 bits (68), Expect = 7.4,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
 Frame = -1

Query: 100    SRPGRA--RSESETLERSPPQSPGPGKAGDAPNRRSG---HVRGARVLSPPGRR 148
              +RPG    R  +   E +PP    P  A +AP RR G   H + ARV   PGRR
Sbjct: 161643 ARPGLGARRLHARGAEPAPPVPQAPRAAREAPERRRGRAPHEKRARV--APGRR 161488


>scaffold_80
          Length = 51841

 Score = 30.8 bits (68), Expect = 7.5,   Method: Composition-based stats.
 Identities = 18/42 (42%), Positives = 20/42 (47%)
 Frame = +3

Query: 115   SPPQSPGPGKAGDAPNRRSGHVRGARVLSPPGRRARLSSPGP 156
             SPP SPG   +G  P  R GH   A   +P  RR     PGP
Sbjct: 51201 SPPASPGAPGSGTPPAARPGH--PAPAGTPRRRRPTAQRPGP 51320


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000079_1.0 # Protein # Thioredoxin reductase 1 (TR1) # Mus
musculus # Complete
         (616 letters)

Database: genome.fa 
           1185 sequences; 56,660,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

scaffold_11                                                           437   e-122
scaffold_8                                                            246   5e-65
scaffold_41                                                           219   1e-56
scaffold_9                                                            114   3e-25
scaffold_3                                                             89   2e-17
scaffold_7                                                             59   2e-08
scaffold_10                                                            48   4e-05
scaffold_5                                                             47   6e-05
scaffold_16                                                            44   7e-04
scaffold_6                                                             44   0.001
scaffold_12                                                            38   0.031

>scaffold_11
          Length = 1405779

 Score =  437 bits (1123), Expect = e-122,   Method: Composition-based stats.
 Identities = 232/460 (50%), Positives = 300/460 (65%), Gaps = 7/460 (1%)
 Frame = -3

Query: 154    KVLVLDFVTPTPLGTRWGLGGTCVNVGCIPKKLMHQAALLGQALKD-SRNYGWKVEDTVK 212
              KV VLDFV P+P G+ WGLGGTCVNVGCIPKKLMH A+++G+ LKD +  +GWK      
Sbjct: 787912 KVAVLDFVKPSPAGSTWGLGGTCVNVGCIPKKLMHTASIIGETLKDDAAAFGWKDAAAGA 787733

Query: 213    HDWEKMTESVQSHIGSLNWGYRVALREKKVVYENAYGRFIGPHRIVATNNKGKEKIYSAE 272
              HDWE M  +VQ HI SLN+ YRVALRE  + Y N  G F   + I  T+ KG +   +A 
Sbjct: 787732 HDWESMKSTVQDHIKSLNFKYRVALREAGITYLNRLGEFEDKNTISLTDKKGNKTSVTAA 787553

Query: 273    RFLIATGERPRYLGIPGDKEYCISSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLD 332
              RF++A G RP  LG PG  E+ I SDDLFSLP  PG+ L VG  Y+ALEC GF AG+G  
Sbjct: 787552 RFIVAVGGRPNKLGCPGG-EHAIDSDDLFSLPKAPGRVLCVGGGYIALECGGFTAGMGYP 787376

Query: 333    VTVMVRSILLRGFDQDMANKIGEHMEEHGIKFIRQFVPTKIEQIEAGTPGRLRVTAQSTN 392
               T MVRSILLRGFD++   KI  H++ HG++      P KIE+ +A T G L VT     
Sbjct: 787375 TTCMVRSILLRGFDRECVGKIEAHIKHHGVQLQVGVTPAKIEK-DAAT-GVLTVTDSGGG 787202

Query: 393    SEETIEGEFNTVLLAVGRDSCTRTIGLETV---GVKINEKTGKIPVTDEEQTNVPYIYAI 449
                E     ++TVL+A GR + T  +G++ V      +N KT K+   DE+    P++YAI
Sbjct: 787201 VHE-----YDTVLVATGRYADTAALGIDNVPGASANVNAKTKKLECVDEQLPGAPHVYAI 787037

Query: 450    GDILEGKLELTPVAIQAGRLLAQRLYGGSNVKCDYDNVPTTVFTPLEYGCCGLSEEKAVE 509
              GD++EG+ ELTPVAI+AG  LA+RL+GG     DY+ V TT+FTPLEYG  GLSE+ A  
Sbjct: 787036 GDVVEGRPELTPVAIEAGLRLARRLFGGKTEPMDYECVATTIFTPLEYGTIGLSEDDAKA 786857

Query: 510    KFGEENIEVYHSFFWPLEWTVP---SRDNNKCYAKIICNLKDDERVVGFHVLGPNAGEVT 566
              + GE N+E Y S F PLE+ +    S   + C+AK++ + K   +VVGFH LGPNAGE+T
Sbjct: 786856 QLGECNVESYISEFAPLEYALSETRSERGDGCFAKLVVD-KSTGKVVGFHYLGPNAGEIT 786680

Query: 567    QGFAAALKCGLTKQQLDSTIGIHPVCAEIFTTLSVTKRSG 606
              QGF+ A++ G T     ST+GIHP  AE FT+++VTK SG
Sbjct: 786679 QGFSIAMRKGATYADFISTVGIHPTVAEEFTSMTVTKSSG 786560


>scaffold_8
          Length = 1961717

 Score =  246 bits (629), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 165/449 (36%), Positives = 240/449 (53%), Gaps = 9/449 (2%)
 Frame = -2

Query: 169     RWGLGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGWKVEDTVKHDWEKMTESVQSHIGS 228
               R  LGGTCVNVGC+PKK+M  AA + + L D+  Y +   + VK DW K+  +  +++  
Sbjct: 1269193 RGALGGTCVNVGCVPKKVMFNAAHIMECLHDAPLYQYSGAEDVKLDWGKLKTARDNYVVR 1269014

Query: 229     LNWGYRVALREKKVVYENAYGRFIGPHRIVATNNKGKEKIYSAERFLIATGERPRY-LGI 287
               LN  Y   L    +        F     ++     G E  Y+A+  L+A G  P   L +
Sbjct: 1269013 LNGIYGRGLDGADITTLTGLASFGDDGEVMV----GGEA-YTADHVLVAVGGVPSLPLEL 1268849

Query: 288     PGDKEYCISSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVR-SILLRGFD 346
                G  E+ I+SD  F L   P   LVVGA Y+A+E AG L  +G D T+ VR    LR FD
Sbjct: 1268848 EGG-EHTITSDGFFELEAMPESCLVVGAGYIAVEMAGILNALGCDTTLAVRGDKALRAFD 1268672

Query: 347     QDMANKIGEHMEEHGIKFIRQFVPTKIEQIEAGTPGRLRVTAQSTNSEETIEGEFNTVLL 406
               + ++  +   M+  G+K        K+E ++    G+  VT     ++    G F+ VL+
Sbjct: 1268671 ELLSTTLDAEMKRAGMKIATGTTLAKVELVD----GKKVVTT----TDGATLGPFDEVLM 1268516

Query: 407     AVGRDSCTRTIGLETVGVKINEKTGKIPVTDEEQTNVPY-IYAIGDILEGKLELTPVAIQ 465
               AVGR      + LE  GV +N++ G + V + ++T   + +YA+GD+  G +ELTP+AI 
Sbjct: 1268515 AVGRKPLVEPLKLENAGVDLNDE-GYVAVDEYQRTTSEHNVYALGDVC-GAIELTPMAIA 1268342

Query: 466     AGRLLAQRLYGG---SNVKCDYDNVPTTVFTPLEYGCCGLSEEKAVEKFGEENIEVYHSF 522
               AGR L+ RL+GG   +N K DY+ VPT VF+    G  GL+E +A+EK+GE N++V+ S 
Sbjct: 1268341 AGRRLSDRLFGGPECANAKADYEGVPTVVFSHPTIGTIGLTEAEALEKYGEANVKVWTST 1268162

Query: 523     F---WPLEWTVPSRDNNKCYAKIICNLKDDERVVGFHVLGPNAGEVTQGFAAALKCGLTK 579
               F   W     +   D  K   K++     +E VVG HV+G  A E+ QGF  A+K G TK
Sbjct: 1268161 FVNLWYGPMPIDPSDKPKTAMKLV-TAGANELVVGLHVIGLGADEMLQGFGVAMKMGATK 1267985

Query: 580     QQLDSTIGIHPVCAEIFTTLSVTKRSGGD 608
                  DS I +HP  AE F TL+   +  GD
Sbjct: 1267984 ADFDSCIALHPTAAEEFVTLAPWGQGAGD 1267898



 Score = 73.6 bits (179), Expect(2) = 4e-16,   Method: Composition-based stats.
 Identities = 91/411 (22%), Positives = 176/411 (42%), Gaps = 16/411 (3%)
 Frame = -1

Query: 201     RNYGWKVEDTVKHDWEKMTESVQSHIGSLNWGYRVALREKKVVYENAYGRFIGPHRIVAT 260
               R+ G  V   V+ D   +    +  +  +  G   +L    V     +G + GP+ +   
Sbjct: 1713527 RSMGITVPGGVEFDRAGIAAHAEQLVNKVRGGLEGSLGRLGVELIPEFGAYGGPNTVELG 1713348

Query: 261     NNKGKEKIYSAERFLIATGERPRYL-GIPGDKEYCISSDDLFSLPYCPGKTLVVGASYVA 319
               N K      +A+  ++A G  P    G+  D E   +SD+   L + P    ++G+  + 
Sbjct: 1713347 NGKK----VTAQDIILAPGSVPFVPPGVTIDGETVYTSDEGLRLEHVPEYCAIIGSGIIG 1713180

Query: 320     LECAGFLAGIGLDVTVM-VRSILLRGFDQDMANKIGEHM-EEHGIKFIRQFVPTKIEQIE 377
               LE +     +G + T++     L+  FD+++A +    +    GI +      +K+    
Sbjct: 1713179 LEFSDVYTALGSECTLIEALPKLMPAFDREIAKQAERLLLTPRGIDYRTGVFASKV---- 1713012

Query: 378     AGTPGRLR-----VTAQSTNSEETIEG-EFNTVLLAVGRDSCTRTIGLETVGVKIN---- 427
                 TPG+L      +      ++E +E  E +T ++A GR   T  +GL+  G++      
Sbjct: 1713011 --TPGKLGEKPVVIEMIDAETKELVEVLEVDTCMVATGRVPNTGKLGLDKHGIETPRGFV 1712838

Query: 428     --EKTGKIPVTDEEQTNVPYIYAIGDILEGKLELTPVAIQAGRLLAQRLYGGSNVKCDYD 485
                 ++T ++           ++Y IGD   G   L   A   G    + + G  +V  +++
Sbjct: 1712837 QVDETMRVLAGPGGAVADEHLYCIGDA-NGIQMLAHTASTQGVSAIENICGRKHV-VNHE 1712664

Query: 486     NVPTTVFTPLEYGCCGLSEEKAVEKFGEENIEVYHSF-FWPLEWTVPSRDNNKCYAKIIC 544
               ++P   FT  E    G+ E+ A ++   E  E+  +   +       +       AK++ 
Sbjct: 1712663 DIPAACFTHPEVAQVGIDEDAAKDRAEAEGFELGKAVGHFRANSKALAEGEGDGIAKVLF 1712484

Query: 545     NLKDDERVVGFHVLGPNAGEVTQGFAAALKCGLTKQQLDSTIGIHPVCAEI 595
               N KD E+++G H++G +A ++ Q  A A   G T ++L  T   HP  +E+
Sbjct: 1712483 N-KDTEQILGVHIIGLHAADLIQECANAKAAGTTVRELAFTTHTHPTLSEV 1712334



 Score = 30.8 bits (68), Expect(2) = 4e-16,   Method: Composition-based stats.
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -3

Query: 172     LGGTCVNVGCIPKKLMHQAA 191
               +GGTCVN GC+P K +  A+
Sbjct: 1713702 VGGTCVNRGCVPSKALLAAS 1713643


>scaffold_41
          Length = 407180

 Score =  219 bits (557), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 145/440 (32%), Positives = 220/440 (50%), Gaps = 11/440 (2%)
 Frame = +1

Query: 171    GLGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGWKVEDTVKH---DWEKMTESVQSHIG 227
              G GGTCVNVGC+PKK+M+ AA   ++          +  ++     DW  +     +++ 
Sbjct: 241159 GFGGTCVNVGCVPKKIMYNAAHCRESALGPTATAAGLGVSLSGGAVDWAALKRRRDAYVA 241338

Query: 228    SLNWGYRVALREKKVVYENAYGRFIGPHRIVATNNKGKEKIYSAERFLIATGERPRYLGI 287
               LN  Y    ++  V        F+    I    N+     Y+A+  ++A G  P  L I
Sbjct: 241339 GLNAAYERNWKKAGVEVLVGAASFVDARTIAVDGNR-----YAADEVVVAVGGAPASLDI 241503

Query: 288    PGDKEYCISSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVR--SILLRGF 345
              PG     + SDD F L   P K  VVGA Y+A+E AG L G+G D  +  R  ++L RGF
Sbjct: 241504 PGGA-LAVDSDDFFDLEDLPKKVCVVGAGYIAVELAGILHGLGSDADLAFRGDTVLRRGF 241680

Query: 346    DQDMANKIGEHMEEHGIKFIRQFVPTKIEQIEAGTPGRLRVTAQSTNSEETIEGEFNTVL 405
              D  +   I   +E HG   +R+  P  + +       R ++T +  +        ++ V+
Sbjct: 241681 DPFVVETIMGELEAHGPNLVRRATPAAVVE------ERGKLTLELEDGRRL--AGYDAVV 241836

Query: 406    LAVGRDSCTRTIGLETVGVKINEKTGKIPVTDEEQTNVPYIYAIGDILEGKLELTPVAIQ 465
               AVGR   T  + LE  GV ++ + G++ V D + ++   +YA+GD  +   ELTPVAI 
Sbjct: 241837 AAVGRAPATAALRLENAGVAVDAR-GRVIVDDYQNSSARGVYAVGDACDRGYELTPVAIA 242013

Query: 466    AGRLLAQRLYGGS-NVKCDYDNVPTTVFTPLEYGCCGLSEEKAVEKFGEENIEVYHSFFW 524
              AGR LA RL+GG    + DY ++ T VF+    G  GL+E  A  ++G+  + V  S F 
Sbjct: 242014 AGRRLADRLFGGEPRARLDYADISTVVFSHPPIGVVGLTEPAARARYGD--VAVKESRFP 242187

Query: 525    PLEWTVPSRDNNKCYAKIICNLK-----DDERVVGFHVLGPNAGEVTQGFAAALKCGLTK 579
               + + +     N   AK+   LK      +ERVVG H++GP + E+ QGFA ALK G T+
Sbjct: 242188 SMAFAL-----NGAGAKVTTALKLVLAGPEERVVGLHLVGPGSDEMLQGFAVALKMGATR 242352

Query: 580    QQLDSTIGIHPVCAEIFTTL 599
                L++ + IHP  AE   T 
Sbjct: 242353 SDLEAAVAIHPTVAEELVTF 242412


>scaffold_9
          Length = 1602328

 Score =  114 bits (286), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 95/366 (25%), Positives = 170/366 (46%), Gaps = 5/366 (1%)
 Frame = -3

Query: 234     RVALREKKVVYENAYGRFIGPHRIVATNNKGKEKIYSAERFLIATGERPRYLG-IPGDKE 292
               R   ++ KV Y   +G   GP+ +    N G  +   ++  LIATG  P  L   P D  
Sbjct: 1366250 RFLFKKYKVDYLQGHGTITGPNSVAVALNDGGSEAVESKNILIATGSEPSPLPPCPVDNA 1366071

Query: 293     --YCISSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVM-VRSILLRGFDQDM 349
                   + S     L   P    VVG   + LE       +G  VTV+     ++ G D+++
Sbjct: 1366070 GGKIVDSTGALVLDKIPKTMAVVGGGVIGLEMGSVWRRLGTKVTVVEYLGNIVPGVDKEV 1365891

Query: 350     ANKIGEHMEEHGIKFIRQFVPTKIEQIEAGTPGRLRVTAQSTNSEETIEGEFNTVLLAVG 409
                      +++ G+KF         E ++ G    L        S+ET +  F+ VL+A G
Sbjct: 1365890 GKAFLRVLKKQGMKFKLNTGVVASEVVDGGV--ELTHAPAKDPSKETTD-RFDVVLVATG 1365720

Query: 410     RDSCTRTIGLETVGVKINEKTGKIPVTDEEQTNVPYIYAIGDILEGKLELTPVAIQAGRL 469
               R   T  +GL+ +G++  +K G++ V +  +T +P IYA GD+++G + L   A + G  
Sbjct: 1365719 RRPFTDKLGLDALGIE-TDKLGRVVVDEHFKTKIPSIYAFGDVVDGPM-LAHKAEEEGIA 1365546

Query: 470     LAQRLYGGSNVKCDYDNVPTTVFTPLEYGCCGLSEEKAVEKFGEENIE-VYHSFFWPLEW 528
                 + + G +    +YD +P  ++T  E    G +EE+      +E ++ V  SF +    
Sbjct: 1365545 CVESIAGFAG-HVNYDVIPGVIYTHPELATAGKTEEQ----LKDEGVDYVVGSFPFSANS 1365381

Query: 529     TVPSRDNNKCYAKIICNLKDDERVVGFHVLGPNAGEVTQGFAAALKCGLTKQQLDSTIGI 588
                  +  +++   K++C+ K  +R++G H++GPNAGE+       ++ G + + +  T   
Sbjct: 1365380 RARAVGDSEGLVKVLCD-KATDRILGVHIIGPNAGEMIAEGVLGMEYGASSEDIARTCHA 1365204

Query: 589     HPVCAE 594
               HP  +E
Sbjct: 1365203 HPTLSE 1365186



 Score = 75.9 bits (185), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 108/435 (24%), Positives = 180/435 (41%), Gaps = 13/435 (2%)
 Frame = +2

Query: 173    GGTCVNVGCIPKKLMHQAALLGQALKDSRNYGWKVEDTVKHDWEKMTES---VQSHIGSL 229
              GG C+NVGC+P K + + A   +  +    +G      V  D+  + E    +++ I   
Sbjct: 798026 GGDCLNVGCVPSKALLRCARAAREARRGAEFGVD-GAAVAVDFGAVMERMRRLRARIAPA 798202

Query: 230    NWGYRVALREKKVVYENAYGRFIGPHRIVATNNKGKEKIYSAERFLIATGERPRYLGIPG 289
              +     A     V      G F+GP+ I       K +     + ++ATG +     IPG
Sbjct: 798203 DAHAATAAVGADVF--QGRGVFVGPNEIEVNGQTLKFR-----KAVVATGGQAAVPSIPG 798361

Query: 290    DKEYCISSD-DLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRSI-LLRGFDQ 347
                E    ++  LF+    P + +VVGA  + LE A  LA  G  VT ++RS  +L   D 
Sbjct: 798362 LAEAPYHTNATLFNATALPPRVVVVGAGPIGLEMAQALAVFGSKVTCVLRSAKVLPKEDP 798541

Query: 348    DMANKIGEHMEEHGIKFIRQFVPTKIEQIE----AGTPGRLRVTAQSTNSEETIEGEFNT 403
              D A  +   +E  G+ F+      ++E       A  P  + V      +E  +E E   
Sbjct: 798542 DAAALVRAALERDGVAFVTGAAYKRVEHAPPKKGAAFP-TIGVAVDVDGAETRLECEM-- 798712

Query: 404    VLLAVGRDSCTRTIGLETVGVKINEKTGKIPVTDEEQTNVPYIYAIGDILEGKLELTPVA 463
              +L+A GR       GL+  GV  + + G + V D  +T  P +YA+GD+   + + T VA
Sbjct: 798713 LLVATGRKPNVEHCGLDKAGVAFDVRDG-VQVDDYLRTTNPDVYAVGDVCT-RYQFTHVA 798886

Query: 464    -IQAGRLLAQRLYGGSNVKCDYDNVPTTVFTPLEYGCCGLSEEKAVEK---FGEENIEVY 519
                 AG ++   L+ G +       VP   +T  E    GL E     +          + 
Sbjct: 798887 GTMAGMVVDNALFRGRHAFSKL-VVPWATYTEPEVAHVGLYERDVASQGLACDTYTTALA 799063

Query: 520    HSFFWPLEWTVPSRDNNKCYAKIICNLKDDERVVGFHVLGPNAGEVTQGFAAALKCGLTK 579
              H+    LE           + K+ C    DE ++G  ++  +AGE+      A++  +  
Sbjct: 799064 HNDRAILEGATEG------FVKVHCRKGTDE-ILGATIVADHAGELISELTLAIQANVGL 799222

Query: 580    QQLDSTIGIHPVCAE 594
                +  TI  +P  +E
Sbjct: 799223 GTIGKTIHPYPTVSE 799267


>scaffold_3
          Length = 3001400

 Score = 89.0 bits (219), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 105/444 (23%), Positives = 187/444 (42%), Gaps = 21/444 (4%)
 Frame = +2

Query: 172     LGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGWKVEDTVKHDW-------EKMTESVQS 224
               +GG C+NVGC P K +   A     LK + ++G  V   V  D+         +   +  
Sbjct: 2787698 MGGDCLNVGCFPSKALIACARKCHELKHAADFGVTVSGDVTVDFGFVMKRMRALRAGIAP 2787877

Query: 225     HIGSLNWGYRVALREKKVVYENAYGRFIGPHRIVATNNKGKEKIYSAERFLIATGERPRY 284
               H G   +G     R+          +F  P  +V T++ G+ +  + ++ +IATG     
Sbjct: 2787878 HDGVERYG-----RDFCDDVCVGVAKFASPTEVVITSHGGETQSVAFDKCMIATGASAAV 2788042

Query: 285     LGIPGDKEYC--ISSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVM-VRSIL 341
               + +PG ++ C  +++ + F+L   P +  ++GA  + +E A  L   G  VT+  V   L
Sbjct: 2788043 VPVPGLRD-CPHLTNGNFFNLEALPPRACLIGAGPIGIEMAQSLQRFGCAVTIFEVAPQL 2788219

Query: 342     LRGFDQDMANKIGEHMEEHGIKFIRQFVPTKIE-----QIEAGTPGRLRVTAQSTNSEET 396
               L   D D A  + E +   G++       T I+      ++A  P        S  + + 
Sbjct: 2788220 LPREDPDAAKLVTEALIADGVEVHYAVKITGIKLAGELAMKAPWPTYDVSVTLSDGTAKV 2788399

Query: 397     IEGEFNTVLLAVGRDSCTRTIGLETVGVKINEKTGKIPVTDEEQTNVPYIYAIGDILEGK 456
                + E   +L A GR      IGL+  GV  + +TG + ++D  +T+ P IY+ GD     
Sbjct: 2788400 FQCE--ALLNATGRAPNVSGIGLDEAGVDYDTRTG-VHISDLYETSAPNIYSCGDC-ASP 2788567

Query: 457     LELTPVAIQAGRLLAQRLYGGSNVKCDYDNVPTTVFTPLEYGCCGLSEEKAVEKFGEENI 516
                + T  A    R   + ++  +N K     VP   +T  E    GL E++  +K    + 
Sbjct: 2788568 YKFTHAADWQARCAVRNMFLQANSKHSDLLVPWATYTDPEIAHVGLYEKEMDDKGIAYDT 2788747

Query: 517     EVYHSFFWPLEWTVPSRDNNKC------YAKIICNLKDDERVVGFHVLGPNAGEVTQGFA 570
                V               D  KC      + KI C  K  ++++G  ++GP AG++     
Sbjct: 2788748 YVRQ---------FKDVDRCKCEGVTSGFVKISC-AKGSDQILGSTIVGPCAGDLISEIT 2788897

Query: 571     AALKCGLTKQQLDSTIGIHPVCAE 594
                 ++ G+  + +   +  +P  AE
Sbjct: 2788898 VCMQNGIGCKDIAGVMHPYPTTAE 2788969


>scaffold_7
          Length = 2177197

 Score = 59.3 bits (142), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 77/326 (23%), Positives = 134/326 (41%), Gaps = 6/326 (1%)
 Frame = +2

Query: 275     LIATGERPRYLGIPGDKEYCISSD-DLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDV 333
               ++ATG  P    +PG +E    +    +     P + +V+G    A E A  L+ +G  V
Sbjct: 1396100 IVATGASPALPDVPGLREAPYRTHLSWYDCEELPRRAVVLGGGPQAAETAQALSVLGCRV 1396279

Query: 334     TVMVRSILLRGFDQDMANKIGEHMEEHGIKFIRQ--FVPTKIEQIEAGTPG-RLRVTAQS 390
                +  R   L   D   A+ +   +E  G++ +    FV   +++ EA   G  +R T   
Sbjct: 1396280 CLAARGEFLPREDAAAASVVRRELEADGVEILTNVSFVAVSVDEAEALPVGVAIRETNDF 1396459

Query: 391     TNSEETIEGEFNTVLLAVGRDSCTRTIGLETVGVKINEKTGKIPVTDEEQTNVPYIYAIG 450
                 SE+ +    + +L+A GR      +GL+  GV  + + G I V    +T+ P I+A G
Sbjct: 1396460 YASEKRVL-RCDALLVAAGRKPRVAGLGLDAAGVAYDAQNG-IRVDGMLRTSNPRIFAAG 1396633

Query: 451     DILEGKLELTPVAIQAGRLLAQRLYGGSNVKCDYDNV--PTTVFTPLEYGCCGLSEEKAV 508
               D+  G          A   +   L+GG     D+  V  P    T  E    GL E    
Sbjct: 1396634 DVASGYQHAHAAVAMAAAAVENALFGGD---ADFGAVLLPWVTHTAPELAHVGLYERDVA 1396804

Query: 509     EKFGEENIEVYHSFFWPLEWTVPSRDNNKCYAKIICNLKDDERVVGFHVLGPNAGEVTQG 568
                       +VY +    ++  +   D      +++     DE ++G  V+ P+AG++   
Sbjct: 1396805 -----GGCDVYETDLAHVDRAILDGDEGG-LVRVVTARGSDE-ILGATVVAPHAGDLIAE 1396963

Query: 569     FAAALKCGLTKQQLDSTIGIHPVCAE 594
                A A+   L   +L   +  +P  A+
Sbjct: 1396964 IAVAMHGKLGLGELGRVVVPYPALAQ 1397041


>scaffold_10
          Length = 1654512

 Score = 48.1 bits (113), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 70/327 (21%), Positives = 127/327 (38%), Gaps = 23/327 (7%)
 Frame = +1

Query: 275    LIATGERP-RYLGIPGD------KEYCISSDDLFSLPYCPGKTLVVGASYVALECAGFLA 327
              ++ATG R  R+ G+  D      +     SD +  L + P + ++VG   +A+E A   A
Sbjct: 698035 VVATGSRAVRFDGLDYDGADAAGRRRVYDSDSVKGLSFLPRRVVIVGGGIIAVEYARIFA 698214

Query: 328    GIGLDVTVMVRSILLR------GFDQDMANKIGEHMEEHGIKFIRQFVPTKIEQIEAGTP 381
               +  DVT++VRS  L       G D  +A  +   + + G+  + +   T+I        
Sbjct: 698215 ALAADVTLVVRSADLPKSLRRVGIDAGLAGALQADLRDAGVDILFE---TEIAGAALAG- 698382

Query: 382    GRLRVTAQSTNSEETIEGEFNTVLLAVGRDSCTRTIGLETVGVK-INEKTGKIPVTDEEQ 440
                    A +     T+E +   +L A GR + TR +  +   V  +    G + V  E +
Sbjct: 698383 ---AAVAVALRDGRTLEAD--VLLTATGRAAVTRGVFDDAALVDGLLAPNGDLLVDGELK 698547

Query: 441    TNVPYIYAIGDILEGKLELTPVAIQAGRLLAQRLYGGSNVKCDYD---------NVPTTV 491
              T    +   GD++ G  +L    I         +YG      D             P  +
Sbjct: 698548 TVHRAVSGAGDVV-GAPQLASTGIAQAEAAVDCVYGDGCALGDVSPAGLLASTARYPVGI 698724

Query: 492    FTPLEYGCCGLSEEKAVEKFGEENIEVYHSFFWPLEWTVPSRDNNKCYAKIICNLKDDER 551
              +T  E   CGL+ E A ++  +  + V H           S  + +   K++        
Sbjct: 698725 WTVPELAFCGLTAEAAADRGLDVVVGVAHYADTVRGHVRESDASTRSCLKLVVARDAPHT 698904

Query: 552    VVGFHVLGPNAGEVTQGFAAALKCGLT 578
              ++G H+ G +A E+       ++  +T
Sbjct: 698905 ILGVHLFGDDAAELVHFGTTLVQASMT 698985


>scaffold_5
          Length = 3000003

 Score = 47.4 bits (111), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 51/197 (25%), Positives = 82/197 (41%), Gaps = 11/197 (5%)
 Frame = -3

Query: 267    KIYSAERFLIATGERPRYLGIPGDKEY-------CISSDDLFSLPYCPGKTLVVGASYVA 319
              ++++    ++ATG  PR+LG PG++E        C + D  F   Y     +VVG    A
Sbjct: 719815 EVFTTSALVVATGASPRWLGAPGERELLSRGVHTCATCDGYF---YRDRDVVVVGGGDTA 719645

Query: 320    LECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIGEHMEEHGIKFIRQFVPTKIEQIEAG 379
              +E A FLA I   V V+ R    R   + MA ++ +H +      I     T I +  AG
Sbjct: 719644 MEQALFLARIANRVYVVHRKNSFRA-SKAMATRVLKHPK------ILILWDTVISRFLAG 719486

Query: 380    TPGRLRVTAQSTNSEETIEGE----FNTVLLAVGRDSCTRTIGLETVGVKINEKTGKIPV 435
                G L      T+ +     E     +   +A+G +  T         V+ +E      +
Sbjct: 719485 DDGNLNAVELVTDPQGGTASETSLSVDGAFVAIGMNPNTELF----TEVRKDEDGYIYTL 719318

Query: 436    TDEEQTNVPYIYAIGDI 452
                   T+V  +YA GD+
Sbjct: 719317 PGSTVTSVTGVYAAGDV 719267


>scaffold_16
          Length = 966663

 Score = 43.9 bits (102), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 54/201 (26%), Positives = 86/201 (42%), Gaps = 16/201 (7%)
 Frame = -1

Query: 270    SAERFLIATGERPRYLGIPGDKEY-------CISSDDLFSLPYCPGKTLVVGASYVALEC 322
              SA   ++ATG   R+LG+ G+ E+       C + D      Y      V+G    A+E 
Sbjct: 736605 SAHTLIVATGADSRWLGVAGESEFKGGGVSSCATCDGFL---YRDRDVAVIGGGDTAMED 736435

Query: 323    AGFLAGIGLDVTVMVRSILLRGFDQDMANKIGEH--MEEHGIKFIRQFVPTKIE-QIEAG 379
              A  LA     VTV+ R    R   + MA ++ EH  +E      +  F  T  E ++E G
Sbjct: 736434 ALVLARTSAKVTVVHRRDAFRA-SKAMATRVLEHPKIEVRWNATVASFSGTHEELEMEDG 736258

Query: 380    TPG---RLRVTAQSTNSEETIEGEFNTVLLAVGRDSCTRTIGLETVGVKINEKTGKIPVT 436
                      RV   ST S E    +     +A+G D  T+    + V VK    +G + + 
Sbjct: 736257 VKDIATLTRVHLTSTASGEASALDVAAAFVAIGHDPNTKLFADQLV-VK---PSGYLELA 736090

Query: 437    DEE---QTNVPYIYAIGDILE 454
                +   + +VP ++A GD+ +
Sbjct: 736089 GSKFATELSVPGVFAAGDVAD 736027


>scaffold_6
          Length = 2755913

 Score = 43.5 bits (101), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/113 (23%), Positives = 53/113 (46%), Gaps = 2/113 (1%)
 Frame = -2

Query: 237    LREKKVVYENAYGRFIGPHRIVATNNKGKEKI-YSAERFLIATGERP-RYLGIPGDKEYC 294
              L++ +V Y+      +G  ++      G   +  +  + L+  G  P R  G+P D    
Sbjct: 945052 LKKFRVGYQQGTATLLGDGKVRVDRVGGAGCVDVAGAKLLVCCGSVPMRVGGVPFDGRRV 944873

Query: 295    ISSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRGFDQ 347
                +D + +L + P   ++VG+  +A+E A     +G  VT++VRS +    D+
Sbjct: 944872 FDADSINTLGFLPKSVVIVGSGIIAIEYAMIFRKLGAAVTMLVRSSMTSALDR 944714


>scaffold_12
          Length = 1412611

 Score = 38.1 bits (87), Expect = 0.031,   Method: Composition-based stats.
 Identities = 66/269 (24%), Positives = 109/269 (40%), Gaps = 21/269 (7%)
 Frame = +1

Query: 237    LREKKVVYENAYGRFIGPHRIVATNNKGKEK-IYS------AERFLIATGERPRYLGIPG 289
              +R++ V Y   Y R     ++   +  G+ K +Y+      A   ++ATG   R     G
Sbjct: 981757 MRDQAVSYGTDYRR----AQVFMVDTDGEFKMVYTPDATIKARALVLATGAMGRPPSFAG 981924

Query: 290    DKEY-------CISSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILL 342
              + EY       C + D  F   Y   +  VVG    A+E A FL      V  +      
Sbjct: 981925 EGEYLGKGVSYCATCDGAF---YRESEVAVVGTHTDAIEEATFLTKFASTVHWITS---- 982083

Query: 343    RGFDQDMANKIGEHMEEHGIKFIRQFVPTKIEQIEAGTPGRLRVTAQSTNSEE---TIEG 399
                 ++  A+   E  E  G+  ++ +  T ++ +E    G   VT +    +E    +EG
Sbjct: 982084 ---NEPKADD-AEAWELIGLDNVKHWPRTAMKAVEGDASGVTGVTIKPRGEDELLLPVEG 982251

Query: 400    EFNTVLLAVGRDSCTRTIGLETVGVKINEKTGKIPVTDEEQTNVPYIYAIGDILEGKLEL 459
               F   +   G    T    L+T  V+  +  G + V D   T++P +YAIGDI     + 
Sbjct: 982252 CF---IYMSGSKPITDF--LQTGQVEFRDD-GGVAVDDNMATSMPGVYAIGDIRNTPFKQ 982413

Query: 460    TPVAIQAGRLLA----QRLYGGSNVKCDY 484
                VA   G + A    + L G + V+ D+
Sbjct: 982414 VVVAASDGCIAAMDIDRYLKGRNKVRVDW 982500


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000080_1.0 # Protein # Thioredoxin reductase 2 (TR2) # Mus
musculus # Complete
         (496 letters)

Database: genome.fa 
           1185 sequences; 56,660,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

scaffold_11                                                           349   5e-96
scaffold_8                                                            219   9e-57
scaffold_41                                                           189   6e-48
scaffold_9                                                             88   3e-17
scaffold_3                                                             70   7e-12
scaffold_7                                                             56   9e-08
scaffold_10                                                            40   0.006
scaffold_2                                                             34   0.36 
scaffold_20                                                            33   0.95 
scaffold_1                                                             30   8.4  

>scaffold_11
          Length = 1405779

 Score =  349 bits (895), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 196/471 (41%), Positives = 278/471 (59%), Gaps = 39/471 (8%)
 Frame = -3

Query: 55     LACAKEAAQLGKKVAVADYVEPSPRGTKWGLGGTCVNVGCIPKKLMHQAALLGGMIRD-A 113
              LAC+KE A+LG KVAV D+V+PSP G+ WGLGGTCVNVGCIPKKLMH A+++G  ++D A
Sbjct: 787948 LACSKECAKLGAKVAVLDFVKPSPAGSTWGLGGTCVNVGCIPKKLMHTASIIGETLKDDA 787769

Query: 114    HHYGWEVAQPVQHNWKTMAEAVQNHVKSLNWGHRVQLQDRKVKYFNIKASFVDEHTVRGV 173
                +GW+ A    H+W++M   VQ+H+KSLN+ +RV L++  + Y N    F D++T+   
Sbjct: 787768 AAFGWKDAAAGAHDWESMKSTVQDHIKSLNFKYRVALREAGITYLNRLGEFEDKNTISLT 787589

Query: 174    DKGGKATLLSAEHIVIATGGRPRYPTQVKGALEYGITSDDIFWLKESPGKTSVPAAEDVA 233
              DK G  T ++A   ++A GGRP       G  E+ I SDD+F L ++PG+        +A
Sbjct: 787588 DKKGNKTSVTAARFIVAVGGRPNKLGCPGG--EHAIDSDDLFSLPKAPGRVLCVGGGYIA 787415

Query: 234    LECAGFLTGIGLDTTVMMRSIPLRGFDQQMSSLVTEHMESHGTQFLKGCVPSHIKK-LPT 292
              LEC GF  G+G  TT M+RSI LRGFD++    +  H++ HG Q   G  P+ I+K   T
Sbjct: 787414 LECGGFTAGMGYPTTCMVRSILLRGFDRECVGKIEAHIKHHGVQLQVGVTPAKIEKDAAT 787235

Query: 293    NQLQVTWEDHASGKEDTGTFDTVLWAIGRVPETRTL---NLEKAGISTNPKNQKIIVDAQ 349
                L VT  D   G  +   +DTVL A GR  +T  L   N+  A  + N K +K+    +
Sbjct: 787234 GVLTVT--DSGGGVHE---YDTVLVATGRYADTAALGIDNVPGASANVNAKTKKLECVDE 787070

Query: 350    EATSVPHIYAIGDVAEGRPELTPTAIKAGKLLAQRLFGKSSTLMDYSNV----------- 398
              +    PH+YAIGDV EGRPELTP AI+AG  LA+RLFG  +  MDY  V           
Sbjct: 787069 QLPGAPHVYAIGDVVEGRPELTPVAIEAGLRLARRLFGGKTEPMDYECVATTIFTPLEYG 786890

Query: 399    --------------------YHAYYKPLEFTVADRDASQ---CYIKMVCMREPPQLVLGL 435
                                  Y + + PLE+ +++  + +   C+ K+V  +   ++V G 
Sbjct: 786889 TIGLSEDDAKAQLGECNVESYISEFAPLEYALSETRSERGDGCFAKLVVDKSTGKVV-GF 786713

Query: 436    HFLGPNAGEVTQGFALGIKCGASYAQVMQTVGIHPTCSEEVVKLHISKRSG 486
              H+LGPNAGE+TQGF++ ++ GA+YA  + TVGIHPT +EE   + ++K SG
Sbjct: 786712 HYLGPNAGEITQGFSIAMRKGATYADFISTVGIHPTVAEEFTSMTVTKSSG 786560


>scaffold_8
          Length = 1961717

 Score =  219 bits (557), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 166/480 (34%), Positives = 240/480 (50%), Gaps = 41/480 (8%)
 Frame = -2

Query: 41      QSFDLLVIGGGSGGLACAKEAAQL-GKKVAVADYVEPSPRGTKWGLGGTCVNVGCIPKKL 99
               + FD LVIG GSGG+A AK AAQ+ GKKVAV +      RG    LGGTCVNVGC+PKK+
Sbjct: 1269292 EHFDYLVIGAGSGGIASAKRAAQVHGKKVAVVE------RG---ALGGTCVNVGCVPKKV 1269140

Query: 100     MHQAALLGGMIRDAHHYGWEVAQPVQHNWKTMAEAVQNHVKSLNWGHRVQLQDRKVKYFN 159
               M  AA +   + DA  Y +  A+ V+ +W  +  A  N+V  LN  +   L    +    
Sbjct: 1269139 MFNAAHIMECLHDAPLYQYSGAEDVKLDWGKLKTARDNYVVRLNGIYGRGLDGADITTLT 1268960

Query: 160     IKASFVDEHTVRGVDKGGKATLLSAEHIVIATGGRPRYPTQVKGALEYGITSDDIFWLKE 219
                 ASF D+  V     GG+A   +A+H+++A GG P  P +++G  E+ ITSD  F L+ 
Sbjct: 1268959 GLASFGDDGEVM---VGGEA--YTADHVLVAVGGVPSLPLELEGG-EHTITSDGFFELEA 1268798

Query: 220     SPGKTSVPAAEDVALECAGFLTGIGLDTTVMMR-SIPLRGFDQQMSSLVTEHMESHGTQF 278
                P    V  A  +A+E AG L  +G DTT+ +R    LR FD+ +S+ +   M+  G + 
Sbjct: 1268797 MPESCLVVGAGYIAVEMAGILNALGCDTTLAVRGDKALRAFDELLSTTLDAEMKRAGMKI 1268618

Query: 279     LKGCVPSHIKKLPTNQLQVTWEDHASGKEDTGTFDTVLWAIGRVPETRTLNLEKAGISTN 338
                 G   + ++ +   ++ VT  D A+     G FD VL A+GR P    L LE AG+  N
Sbjct: 1268617 ATGTTLAKVELVDGKKV-VTTTDGAT----LGPFDEVLMAVGRKPLVEPLKLENAGVDLN 1268453

Query: 339     PKNQKIIVDAQEATSVPHIYAIGDVAEGRPELTPTAIKAGKLLAQRLFG----------- 387
                +    + + Q  TS  ++YA+GDV  G  ELTP AI AG+ L+ RLFG           
Sbjct: 1268452 DEGYVAVDEYQRTTSEHNVYALGDVC-GAIELTPMAIAAGRRLSDRLFGGPECANAKADY 1268276

Query: 388     -------------------KSSTLMDY---------SNVYHAYYKPLEFTVADRDASQCY 419
                                  ++  L  Y         S   + +Y P+    +D+  +   
Sbjct: 1268275 EGVPTVVFSHPTIGTIGLTEAEALEKYGEANVKVWTSTFVNLWYGPMPIDPSDKPKTAMK 1268096

Query: 420     IKMVCMREPPQLVLGLHFLGPNAGEVTQGFALGIKCGASYAQVMQTVGIHPTCSEEVVKL 479
               +      E   LV+GLH +G  A E+ QGF + +K GA+ A     + +HPT +EE V L
Sbjct: 1268095 LVTAGANE---LVVGLHVIGLGADEMLQGFGVAMKMGATKADFDSCIALHPTAAEEFVTL 1267925



 Score = 42.0 bits (97), Expect = 0.002,   Method: Composition-based stats.
 Identities = 47/201 (23%), Positives = 80/201 (39%), Gaps = 37/201 (18%)
 Frame = -1

Query: 313     DTVLWAIGRVPETRTLNLEKAGISTN------PKNQKIIVDAQEATSVPHIYAIGDVAEG 366
               DT + A GRVP T  L L+K GI T        +  +++     A +  H+Y IGD A G
Sbjct: 1712927 DTCMVATGRVPNTGKLGLDKHGIETPRGFVQVDETMRVLAGPGGAVADEHLYCIGD-ANG 1712751

Query: 367     RPELTPTAIKAGKLLAQRLFGKSSTLMDYSNVYHAYYKPLEFT--------VADRDASQC 418
                  L  TA   G    + + G+   ++++ ++  A +   E            DR  ++ 
Sbjct: 1712750 IQMLAHTASTQGVSAIENICGRKH-VVNHEDIPAACFTHPEVAQVGIDEDAAKDRAEAEG 1712574

Query: 419     Y-----------------------IKMVCMREPPQLVLGLHFLGPNAGEVTQGFALGIKC 455
               +                       I  V   +  + +LG+H +G +A ++ Q  A     
Sbjct: 1712573 FELGKAVGHFRANSKALAEGEGDGIAKVLFNKDTEQILGVHIIGLHAADLIQECANAKAA 1712394

Query: 456     GASYAQVMQTVGIHPTCSEEV 476
               G +  ++  T   HPT SE +
Sbjct: 1712393 GTTVRELAFTTHTHPTLSEVI 1712331



 Score = 32.7 bits (73), Expect = 1.1,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 32/62 (51%)
 Frame = -3

Query: 85      LGGTCVNVGCIPKKLMHQAALLGGMIRDAHHYGWEVAQPVQHNWKTMAEAVQNHVKSLNW 144
               +GGTCVN GC+P K +  A+   G +RD    G E     +H   T A   +  V+ L+ 
Sbjct: 1713702 VGGTCVNRGCVPSKALLAAS---GRVRDM---GDE-----KHLESTAASRGRGDVRELST 1713556

Query: 145     GH 146
               GH
Sbjct: 1713555 GH 1713550


>scaffold_41
          Length = 407180

 Score =  189 bits (480), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 153/475 (32%), Positives = 237/475 (49%), Gaps = 39/475 (8%)
 Frame = +1

Query: 42     SFDLLVIGGGSGGLACAKEAAQLGKKVAVAD---YVEPSPRGTKWGLGGTCVNVGCIPKK 98
              +FD++V+GGGSGG A A+ AA  G +V + D     + S + T  G GGTCVNVGC+PKK
Sbjct: 241024 TFDVIVLGGGSGGSAFARRAAGYGARVLLVDKGPTRDASGKRTGAGFGGTCVNVGCVPKK 241203

Query: 99     LMHQAALLG----GMIRDAHHYGWEVAQPVQHNWKTMAEAVQNHVKSLNWGHRVQLQDRK 154
              +M+ AA       G    A   G  ++     +W  +      +V  LN  +    +   
Sbjct: 241204 IMYNAAHCRESALGPTATAAGLGVSLSGGAV-DWAALKRRRDAYVAGLNAAYERNWKKAG 241380

Query: 155    VKYFNIKASFVDEHTVRGVDKGGKATLLSAEHIVIATGGRPRYPTQVKGALEYGITSDDI 214
              V+     ASFVD  T+  VD        +A+ +V+A GG P       GAL   + SDD 
Sbjct: 241381 VEVLVGAASFVDARTI-AVD----GNRYAADEVVVAVGGAPASLDIPGGAL--AVDSDDF 241539

Query: 215    FWLKESPGKTSVPAAEDVALECAGFLTGIGLDTTVMMR--SIPLRGFDQQMSSLVTEHME 272
              F L++ P K  V  A  +A+E AG L G+G D  +  R  ++  RGFD  +   +   +E
Sbjct: 241540 FDLEDLPKKVCVVGAGYIAVELAGILHGLGSDADLAFRGDTVLRRGFDPFVVETIMGELE 241719

Query: 273    SHGTQFLKGCVPSHIKKLPTNQLQVTWEDHASGKEDTGTFDTVLWAIGRVPETRTLNLEK 332
              +HG   ++   P+ + +    +L +  ED   G+   G +D V+ A+GR P T  L LE 
Sbjct: 241720 AHGPNLVRRATPAAVVE-ERGKLTLELED---GRRLAG-YDAVVAAVGRAPATAALRLEN 241884

Query: 333    AGISTNPKNQKIIVDAQEATSVPHIYAIGDVAEGRPELTPTAIKAGKLLAQRLF-GKSST 391
              AG++ + +  ++IVD  + +S   +YA+GD  +   ELTP AI AG+ LA RLF G+   
Sbjct: 241885 AGVAVDARG-RVIVDDYQNSSARGVYAVGDACDRGYELTPVAIAAGRRLADRLFGGEPRA 242061

Query: 392    LMDYSNVYHAYYK--PLEFTVADRDASQCYIKMVCMRE---------------------- 427
               +DY+++    +   P+        A++     V ++E                      
Sbjct: 242062 RLDYADISTVVFSHPPIGVVGLTEPAARARYGDVAVKESRFPSMAFALNGAGAKVTTALK 242241

Query: 428    -----PPQLVLGLHFLGPNAGEVTQGFALGIKCGASYAQVMQTVGIHPTCSEEVV 477
                   P + V+GLH +GP + E+ QGFA+ +K GA+ + +   V IHPT +EE+V
Sbjct: 242242 LVLAGPEERVVGLHLVGPGSDEMLQGFAVALKMGATRSDLEAAVAIHPTVAEELV 242406


>scaffold_9
          Length = 1602328

 Score = 88.2 bits (217), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 94/363 (25%), Positives = 148/363 (40%), Gaps = 35/363 (9%)
 Frame = -3

Query: 147     RVQLQDRKVKYFNIKASFVDEHTVRGVDKGGKATLLSAEHIVIATGGRPRY--PTQVKGA 204
               R   +  KV Y     +    ++V      G +  + +++I+IATG  P    P  V  A
Sbjct: 1366250 RFLFKKYKVDYLQGHGTITGPNSVAVALNDGGSEAVESKNILIATGSEPSPLPPCPVDNA 1366071

Query: 205     LEYGITSDDIFWLKESPGKTSVPAAEDVALECAGFLTGIGLDTTV---MMRSIPLRGFDQ 261
                   + S     L + P   +V     + LE       +G   TV   +   +P  G D+
Sbjct: 1366070 GGKIVDSTGALVLDKIPKTMAVVGGGVIGLEMGSVWRRLGTKVTVVEYLGNIVP--GVDK 1365897

Query: 262     QMSSLVTEHMESHGTQFL--KGCVPSHIKKLPTNQLQVTWEDHASGKEDTGTFDTVLWAI 319
               ++       ++  G +F    G V S +            +D +  KE T  FD VL A 
Sbjct: 1365896 EVGKAFLRVLKKQGMKFKLNTGVVASEVVDGGVELTHAPAKDPS--KETTDRFDVVLVAT 1365723

Query: 320     GRVPETRTLNLEKAGISTNPKNQKIIVDAQEATSVPHIYAIGDVAEGRPELTPTAIKAGK 379
               GR P T  L L+  GI T+ K  +++VD    T +P IYA GDV +G P L   A + G 
Sbjct: 1365722 GRRPFTDKLGLDALGIETD-KLGRVVVDEHFKTKIPSIYAFGDVVDG-PMLAHKAEEEGI 1365549

Query: 380     LLAQRLFGKSSTLMDYSNVYHAYYKPLEFTVADRDASQC--------------------- 418
                  + + G +  + +Y  +    Y   E   A +   Q                      
Sbjct: 1365548 ACVESIAGFAGHV-NYDVIPGVIYTHPELATAGKTEEQLKDEGVDYVVGSFPFSANSRAR 1365372

Query: 419     -------YIKMVCMREPPQLVLGLHFLGPNAGEVTQGFALGIKCGASYAQVMQTVGIHPT 471
                       +K++C +   + +LG+H +GPNAGE+     LG++ GAS   + +T   HPT
Sbjct: 1365371 AVGDSEGLVKVLCDKATDR-ILGVHIIGPNAGEMIAEGVLGMEYGASSEDIARTCHAHPT 1365195

Query: 472     CSE 474
                SE
Sbjct: 1365194 LSE 1365186



 Score = 80.5 bits (197), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 109/468 (23%), Positives = 184/468 (39%), Gaps = 34/468 (7%)
 Frame = +2

Query: 43     FDLLVIGGGSGGLACAKEAAQLGKKVAVADYVEPSPRGTKWGLGGTCVNVGCIPKKLMHQ 102
              +DL+ +G G+GGL  AK+AA+ G + A+ +             GG C+NVGC+P K + +
Sbjct: 797924 YDLVALGAGAGGLVSAKQAARRGARSALIE---------SHLAGGDCLNVGCVPSKALLR 798076

Query: 103    AALLGGMIRDAHHYGWEVAQPVQHNWKTMAEAVQNHVKSLNWGHRVQLQDRKVKYFNIKA 162
               A      R    +G + A         M    +   +                 F  + 
Sbjct: 798077 CARAAREARRGAEFGVDGAAVAVDFGAVMERMRRLRARIAPADAHAATAAVGADVFQGRG 798256

Query: 163    SFVDEHTVRGVDKGGKATLLSAEHIVIATGGRPRYPTQVKGALEYGI-TSDDIFWLKESP 221
               FV  + +   +  G+   L     V+ATGG+   P+ + G  E    T+  +F     P
Sbjct: 798257 VFVGPNEI---EVNGQT--LKFRKAVVATGGQAAVPS-IPGLAEAPYHTNATLFNATALP 798418

Query: 222    GKTSVPAAEDVALECAGFLTGIGLDTTVMMRSIP-LRGFDQQMSSLVTEHMESHGTQFLK 280
               +  V  A  + LE A  L   G   T ++RS   L   D   ++LV   +E  G  F+ 
Sbjct: 798419 PRVVVVGAGPIGLEMAQALAVFGSKVTCVLRSAKVLPKEDPDAAALVRAALERDGVAFVT 798598

Query: 281    GCVPSHIKKLPTNQ----LQVTWEDHASGKEDTGTFDTVLWAIGRVPETRTLNLEKAGIS 336
              G     ++  P  +      +       G E     + +L A GR P      L+KAG++
Sbjct: 798599 GAAYKRVEHAPPKKGAAFPTIGVAVDVDGAETRLECEMLLVATGRKPNVEHCGLDKAGVA 798778

Query: 337    TNPKNQKIIVDAQEATSVPHIYAIGDVAEGRPELTPTA-IKAGKLLAQRLFGKSSTLMDY 395
               + ++  + VD    T+ P +YA+GDV   R + T  A   AG ++   LF         
Sbjct: 798779 FDVRD-GVQVDDYLRTTNPDVYAVGDVCT-RYQFTHVAGTMAGMVVDNALFRGRHAFSKL 798952

Query: 396    SNVYHAYYKP--LEFTVADRD-------------------------ASQCYIKMVCMREP 428
                 +  Y +P      + +RD                         A++ ++K+ C R+ 
Sbjct: 798953 VVPWATYTEPEVAHVGLYERDVASQGLACDTYTTALAHNDRAILEGATEGFVKVHC-RKG 799129

Query: 429    PQLVLGLHFLGPNAGEVTQGFALGIKCGASYAQVMQTVGIHPTCSEEV 476
                 +LG   +  +AGE+     L I+       + +T+  +PT SE +
Sbjct: 799130 TDEILGATIVADHAGELISELTLAIQANVGLGTIGKTIHPYPTVSEAI 799273


>scaffold_3
          Length = 3001400

 Score = 70.1 bits (170), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 114/482 (23%), Positives = 190/482 (39%), Gaps = 46/482 (9%)
 Frame = +2

Query: 41      QSFDLLVIGGGSGGLACAKEAAQLGKKVAVADYVEPSPRGTKWGLGGTCVNVGCIPKKLM 100
               + +DL+VIG G  GL     A  LGKK  + +         K  +GG C+NVGC P K +
Sbjct: 2787593 EKYDLVVIGAGVAGLLSVIVAKSLGKKALLIE---------KHYMGGDCLNVGCFPSKAL 2787745

Query: 101     HQAALLGGMIRDAHHYGWEVAQPVQHNW-------KTMAEAVQNHVKSLNWGHRVQLQDR 153
                  A     ++ A  +G  V+  V  ++       + +   +  H     +G R    D 
Sbjct: 2787746 IACARKCHELKHAADFGVTVSGDVTVDFGFVMKRMRALRAGIAPHDGVERYG-RDFCDDV 2787922

Query: 154     KVKYFNIKASFVDEHTVRGVDKGGKATLLSAEHIVIATGGRPRYPTQVKGALEY-GITSD 212
                V      A F     V     GG+   ++ +  +IATG        V G  +   +T+ 
Sbjct: 2787923 CVGV----AKFASPTEVVITSHGGETQSVAFDKCMIATGASAAV-VPVPGLRDCPHLTNG 2788087

Query: 213     DIFWLKESPGKTSVPAAEDVALECAGFLTGIGLDTTVMMRSIPLRGF-DQQMSSLVTEHM 271
               + F L+  P +  +  A  + +E A  L   G   T+   +  L    D   + LVTE +
Sbjct: 2788088 NFFNLEALPPRACLIGAGPIGIEMAQSLQRFGCAVTIFEVAPQLLPREDPDAAKLVTEAL 2788267

Query: 272     ESHGTQFLKGCVPSHIK---------KLPTNQLQVTWEDHASGKEDTGTFDTVLWAIGRV 322
                + G +       + IK           PT  + VT  D   G       + +L A GR 
Sbjct: 2788268 IADGVEVHYAVKITGIKLAGELAMKAPWPTYDVSVTLSD---GTAKVFQCEALLNATGRA 2788438

Query: 323     PETRTLNLEKAGISTNPKNQKIIVDAQEATSVPHIYAIGDVAEGRPELTPTAIKAGKLLA 382
               P    + L++AG+  + +    I D  E TS P+IY+ GD A    + T  A    +   
Sbjct: 2788439 PNVSGIGLDEAGVDYDTRTGVHISDLYE-TSAPNIYSCGDCASPY-KFTHAADWQARCAV 2788612

Query: 383     QRLF----GKSSTLM----DYSNVYHAYYKPLEFTVAD------------RDASQC---- 418
               + +F     K S L+     Y++   A+    E  + D            +D  +C    
Sbjct: 2788613 RNMFLQANSKHSDLLVPWATYTDPEIAHVGLYEKEMDDKGIAYDTYVRQFKDVDRCKCEG 2788792

Query: 419     ----YIKMVCMREPPQLVLGLHFLGPNAGEVTQGFALGIKCGASYAQVMQTVGIHPTCSE 474
                   ++K+ C +   Q +LG   +GP AG++     + ++ G     +   +  +PT +E
Sbjct: 2788793 VTSGFVKISCAKGSDQ-ILGSTIVGPCAGDLISEITVCMQNGIGCKDIAGVMHPYPTTAE 2788969

Query: 475     EV 476
                V
Sbjct: 2788970 AV 2788975


>scaffold_7
          Length = 2177197

 Score = 56.2 bits (134), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 62/216 (28%), Positives = 89/216 (41%), Gaps = 7/216 (3%)
 Frame = +2

Query: 158     FNIKASFVDEHTVRGVDKGGKATLLSAEHIVIATGGRPRYPTQVKGALEYGITSDDIFWL 217
               F+  A FV E  V  V   G    L+  H ++ATG  P  P  V G  E    +  + W 
Sbjct: 1396013 FSGTAEFVSEDCVE-VAADGDRRRLAFAHCIVATGASPALP-DVPGLREAPYRTH-LSWY 1396183

Query: 218     --KESPGKTSVPAAEDVALECAGFLTGIGLDTTVMMRSIPLRGFDQQMSSLVTEHMESHG 275
                 +E P +  V      A E A  L+ +G    +  R   L   D   +S+V   +E+ G
Sbjct: 1396184 DCEELPRRAVVLGGGPQAAETAQALSVLGCRVCLAARGEFLPREDAAAASVVRRELEADG 1396363

Query: 276     TQFLK-----GCVPSHIKKLPTNQLQVTWEDHASGKEDTGTFDTVLWAIGRVPETRTLNL 330
                + L             + LP         D  + ++     D +L A GR P    L L
Sbjct: 1396364 VEILTNVSFVAVSVDEAEALPVGVAIRETNDFYASEKRVLRCDALLVAAGRKPRVAGLGL 1396543

Query: 331     EKAGISTNPKNQKIIVDAQEATSVPHIYAIGDVAEG 366
               + AG++ + +N  I VD    TS P I+A GDVA G
Sbjct: 1396544 DAAGVAYDAQN-GIRVDGMLRTSNPRIFAAGDVASG 1396648


>scaffold_10
          Length = 1654512

 Score = 40.4 bits (93), Expect = 0.006,   Method: Composition-based stats.
 Identities = 89/347 (25%), Positives = 145/347 (41%), Gaps = 12/347 (3%)
 Frame = +3

Query: 41      QSFDLLVIGGGSGGLACAKEAAQLGKKVAVADYVEPSPRGTKWGLGGTCVNVGCIPKKLM 100
               + FD++V+GGG  G   A+ +A LG KVAV   VE +  G            G + K L 
Sbjct: 1161489 RRFDVVVVGGGPVGCEAARLSATLGHKVAV---VEATRDGALLA-----APTGWVSKALR 1161644

Query: 101     HQAALLGGMIRDAHHYGWEVAQPVQHNWKTMAEAVQNHVKSLNWGHRVQLQDRKVKYFNI 160
                 +  LG    D   +  +V   V++   T   A+     +        + + +V+ F  
Sbjct: 1161645 FASRELGTASGDRRVHWRDVGAYVEN---TAGRALGKTAAAF----APLVNEDRVEAFAG 1161803

Query: 161     KASFVDEHTVRGVDKGGKATLLSAEHIVIATGGR----PRYPTQVKGALEYGITSDDIFW 216
                A+FV  + +      G ATL +A  + +ATG      P  P     A E+   SD I  
Sbjct: 1161804 PATFVGTNKI----AVGDATLEAAT-VFLATGSTGTRVPSLPWDDPAAAEWLYDSDTIMG 1161968

Query: 217     LKESPGKTSVPAAEDVALECAGFLTGIGLDTTVMMRSIPL---RGFDQQMSSLVTEHMES 273
               +   P    +     + +E A  L  +G   T+++R   L   +  D  + S +   +E 
Sbjct: 1161969 VGRLPEHVLIQGGGVIGVEYAFILRHLGARVTLVLREPSLLDGKAVDDDIRSAIAGRLEK 1162148

Query: 274     HG--TQFLKG-CVPSHIKKLPTNQLQVTWEDHASGKEDTGTFDTVLWAIGRVPETRTLNL 330
                G   ++  G  V +   + P    +V      SG+E     D VL A+GR   T +L+L
Sbjct: 1162149 VGVTVRYEDGDVVSAEPPRTPRGPGRVVL---GSGEEI--ACDVVLSAVGRSGATASLDL 1162313

Query: 331     EKAGISTNPKNQKIIVDA--QEATSVPHIYAIGDVAEGRPELTPTAI 375
                  G+   P+   + VDA    A+    ++A GD A GR  ++P  +
Sbjct: 1162314 AAGGLRATPQGH-VDVDAATMRASGAARVWAAGDCA-GRNAVSPPGL 1162448



 Score = 34.3 bits (77), Expect = 0.38,   Method: Composition-based stats.
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = +3

Query: 41     QSFDLLVIGGGSGGLACAKEAAQLGKKVAVADYVEP 76
              + FDL+VIGGG  G++ A  AA LG    + D   P
Sbjct: 697398 REFDLVVIGGGPVGISAANRAASLGLSAILVDATPP 697505



 Score = 30.4 bits (67), Expect = 5.1,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -2

Query: 41      QSFDLLVIGGGSGGLACAKEAAQLGKKVAVADYVE 75
               +++D ++IG G GGL C    A  G++V V +  E
Sbjct: 1124954 EAYDAVIIGSGFGGLCCGALLAHYGQRVVVLESHE 1124850


>scaffold_2
          Length = 3465789

 Score = 34.3 bits (77), Expect = 0.36,   Method: Composition-based stats.
 Identities = 15/32 (46%), Positives = 23/32 (71%)
 Frame = +2

Query: 41     QSFDLLVIGGGSGGLACAKEAAQLGKKVAVAD 72
              +++D++VIG G GGL+CA   A  GK+V V +
Sbjct: 913769 ETYDVVVIGSGIGGLSCAGLLAAAGKRVCVLE 913864



 Score = 32.0 bits (71), Expect = 2.0,   Method: Composition-based stats.
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = -1

Query: 165     VDEHTVRGVDKGGKATLLSAEHIVIATGGRPRYPTQVKGALE 206
               VDE   RGVD   +   + AEH+ +    RPR   +  GA E
Sbjct: 1063557 VDEGQARGVDGARRRAAVVAEHVDVDVDARPRVALEDDGARE 1063432


>scaffold_20
          Length = 721792

 Score = 33.1 bits (74), Expect = 0.95,   Method: Composition-based stats.
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = +2

Query: 43     FDLLVIGGGSGGLACAKEAAQLGKKVAVAD 72
              +D++VIG G GGLAC    A+ G+K  V +
Sbjct: 303599 YDVVVIGSGMGGLACGAMCAKYGEKAIVLE 303688


>scaffold_1
          Length = 3520325

 Score = 30.0 bits (66), Expect = 8.4,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -2

Query: 41      QSFDLLVIGGGSGGLACAKEAAQLGKKVAVAD 72
               + FD +V+G G GGL+ A   +  G+KV V +
Sbjct: 1854640 EHFDAVVVGSGIGGLSAASVLSSFGRKVLVVE 1854545


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000081_1.0 # Protein # Thioredoxin reductase 3 (TR3) # Mus
musculus # Complete
         (615 letters)

Database: genome.fa 
           1185 sequences; 56,660,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

scaffold_11                                                           449   e-126
scaffold_8                                                            229   9e-60
scaffold_41                                                           219   6e-57
scaffold_9                                                            107   7e-23
scaffold_3                                                             84   5e-16
scaffold_28                                                            48   3e-05
scaffold_7                                                             47   5e-05
scaffold_10                                                            47   6e-05
scaffold_1                                                             46   1e-04
scaffold_15                                                            45   3e-04
scaffold_13                                                            43   0.001
scaffold_5                                                             42   0.003
scaffold_641                                                           30   0.008
scaffold_6                                                             38   0.032
scaffold_16                                                            35   0.20 
scaffold_2                                                             30   6.6  

>scaffold_11
          Length = 1405779

 Score =  449 bits (1154), Expect = e-126,   Method: Composition-based stats.
 Identities = 236/485 (48%), Positives = 307/485 (63%), Gaps = 7/485 (1%)
 Frame = -3

Query: 128    DYDXXXXXXXXXXXXCAKEAANLGKKVMVLDFVVPSPQGTTWGLGGTCVNVGCIPKKLMH 187
              DYD            C+KE A LG KV VLDFV PSP G+TWGLGGTCVNVGCIPKKLMH
Sbjct: 787987 DYDVVVVGGGSGGLACSKECAKLGAKVAVLDFVKPSPAGSTWGLGGTCVNVGCIPKKLMH 787808

Query: 188    QAALLGHALQD-AKKYGWEYNQQVKHNWEAMTEAIQSHIGSLNWGYRVTLREKGVTYVNS 246
               A+++G  L+D A  +GW+      H+WE+M   +Q HI SLN+ YRV LRE G+TY+N 
Sbjct: 787807 TASIIGETLKDDAAAFGWKDAAAGAHDWESMKSTVQDHIKSLNFKYRVALREAGITYLNR 787628

Query: 247    FGEFVDLHKIKATNKKGQETFYTASKFVIATGERPRYLGIQGDKEYCITSDDLFSLPYCP 306
               GEF D + I  T+KKG +T  TA++F++A G RP  LG  G  E+ I SDDLFSLP  P
Sbjct: 787627 LGEFEDKNTISLTDKKGNKTSVTAARFIVAVGGRPNKLGCPGG-EHAIDSDDLFSLPKAP 787451

Query: 307    GCTLVVGASYVGLECAGFLAGLGLDVTVMVRSVLLRGFDQEMAEKVGSYLEQQGVKFQRK 366
              G  L VG  Y+ LEC GF AG+G   T MVRS+LLRGFD+E   K+ ++++  GV+ Q  
Sbjct: 787450 GRVLCVGGGYIALECGGFTAGMGYPTTCMVRSILLRGFDRECVGKIEAHIKHHGVQLQVG 787271

Query: 367    FTPILVQQLEKGLPGKLKVVAKSTEGPETVEGIYNTVLLAIGRDSCTRKIGLEKI---GV 423
               TP    ++EK     +  V  S  G       Y+TVL+A GR + T  +G++ +     
Sbjct: 787270 VTP---AKIEKDAATGVLTVTDSGGGVHE----YDTVLVATGRYADTAALGIDNVPGASA 787112

Query: 424    KINEKNGKIPVNDVEQTNVPHVYAIGDILDGKPELTPVAIQAGKLLARRLFGVSLEKCDY 483
               +N K  K+   D +    PHVYAIGD+++G+PELTPVAI+AG  LARRLFG   E  DY
Sbjct: 787111 NVNAKTKKLECVDEQLPGAPHVYAIGDVVEGRPELTPVAIEAGLRLARRLFGGKTEPMDY 786932

Query: 484    INIPTTVFTPLEYGCCGLSEEKAIEMYKKENLEVYHTLFWPLEWTVA---GRDNNTCYAK 540
                + TT+FTPLEYG  GLSE+ A     + N+E Y + F PLE+ ++       + C+AK
Sbjct: 786931 ECVATTIFTPLEYGTIGLSEDDAKAQLGECNVESYISEFAPLEYALSETRSERGDGCFAK 786752

Query: 541    IICNKFDNERVVGFHLLGPNAGEITQGFAAAMKCGLTKQLLDDTIGIHPTCGEVFTTLEI 600
              ++ +K    +VVGFH LGPNAGEITQGF+ AM+ G T      T+GIHPT  E FT++ +
Sbjct: 786751 LVVDK-STGKVVGFHYLGPNAGEITQGFSIAMRKGATYADFISTVGIHPTVAEEFTSMTV 786575

Query: 601    TKSSG 605
              TKSSG
Sbjct: 786574 TKSSG 786560


>scaffold_8
          Length = 1961717

 Score =  229 bits (584), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 167/465 (35%), Positives = 242/465 (52%), Gaps = 10/465 (2%)
 Frame = -2

Query: 144     AKEAANL-GKKVMVLDFVVPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGHALQDAKKY 202
               AK AA + GKKV V++            LGGTCVNVGC+PKK+M  AA +   L DA  Y
Sbjct: 1269241 AKRAAQVHGKKVAVVE---------RGALGGTCVNVGCVPKKVMFNAAHIMECLHDAPLY 1269089

Query: 203     GWEYNQQVKHNWEAMTEAIQSHIGSLNWGYRVTLREKGVTYVNSFGEFVDLHKIKATNKK 262
                +   + VK +W  +  A  +++  LN  Y   L    +T +     F D  ++      
Sbjct: 1269088 QYSGAEDVKLDWGKLKTARDNYVVRLNGIYGRGLDGADITTLTGLASFGDDGEVMV---- 1268921

Query: 263     GQETFYTASKFVIATGERPRY-LGIQGDKEYCITSDDLFSLPYCPGCTLVVGASYVGLEC 321
               G E  YTA   ++A G  P   L ++G  E+ ITSD  F L   P   LVVGA Y+ +E 
Sbjct: 1268920 GGEA-YTADHVLVAVGGVPSLPLELEGG-EHTITSDGFFELEAMPESCLVVGAGYIAVEM 1268747

Query: 322     AGFLAGLGLDVTVMVR-SVLLRGFDQEMAEKVGSYLEQQGVKFQRKFTPILVQQLEKGLP 380
               AG L  LG D T+ VR    LR FD+ ++  + + +++ G+K     T   V+ ++    
Sbjct: 1268746 AGILNALGCDTTLAVRGDKALRAFDELLSTTLDAEMKRAGMKIATGTTLAKVELVDG--- 1268576

Query: 381     GKLKVVAKSTEGPETVEGIYNTVLLAIGRDSCTRKIGLEKIGVKINEKNGKIPVNDVEQT 440
                  K V  +T+G     G ++ VL+A+GR      + LE  GV +N++ G + V++ ++T
Sbjct: 1268575 ---KKVVTTTDGATL--GPFDEVLMAVGRKPLVEPLKLENAGVDLNDE-GYVAVDEYQRT 1268414

Query: 441     NVPH-VYAIGDILDGKPELTPVAIQAGKLLARRLFG---VSLEKCDYINIPTTVFTPLEY 496
                  H VYA+GD+  G  ELTP+AI AG+ L+ RLFG    +  K DY  +PT VF+    
Sbjct: 1268413 TSEHNVYALGDVC-GAIELTPMAIAAGRRLSDRLFGGPECANAKADYEGVPTVVFSHPTI 1268237

Query: 497     GCCGLSEEKAIEMYKKENLEVYHTLF---WPLEWTVAGRDNNTCYAKIICNKFDNERVVG 553
               G  GL+E +A+E Y + N++V+ + F   W     +   D      K++     NE VVG
Sbjct: 1268236 GTIGLTEAEALEKYGEANVKVWTSTFVNLWYGPMPIDPSDKPKTAMKLV-TAGANELVVG 1268060

Query: 554     FHLLGPNAGEITQGFAAAMKCGLTKQLLDDTIGIHPTCGEVFTTL 598
                H++G  A E+ QGF  AMK G TK   D  I +HPT  E F TL
Sbjct: 1268059 LHVIGLGADEMLQGFGVAMKMGATKADFDSCIALHPTAAEEFVTL 1267925



 Score = 83.6 bits (205), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 99/379 (26%), Positives = 166/379 (43%), Gaps = 15/379 (3%)
 Frame = -1

Query: 231     GYRVTLREKGVTYVNSFGEFVDLHKIKATNKKGQETFYTASKFVIATGERPRYL-GIQGD 289
               G   +L   GV  +  FG +   + ++  N K      TA   ++A G  P    G+  D
Sbjct: 1713434 GLEGSLGRLGVELIPEFGAYGGPNTVELGNGKK----VTAQDIILAPGSVPFVPPGVTID 1713267

Query: 290     KEYCITSDDLFSLPYCPGCTLVVGASYVGLECAGFLAGLGLDVTVM-VRSVLLRGFDQEM 348
                E   TSD+   L + P    ++G+  +GLE +     LG + T++     L+  FD+E+
Sbjct: 1713266 GETVYTSDEGLRLEHVPEYCAIIGSGIIGLEFSDVYTALGSECTLIEALPKLMPAFDREI 1713087

Query: 349     AEKVGSYL-EQQGVKFQRKFTPILVQQLEKGLPGKLKVVAK--STEGPETVEGI-YNTVL 404
               A++    L   +G+ ++   T +   ++  G  G+  VV +    E  E VE +  +T +
Sbjct: 1713086 AKQAERLLLTPRGIDYR---TGVFASKVTPGKLGEKPVVIEMIDAETKELVEVLEVDTCM 1712916

Query: 405     LAIGRDSCTRKIGLEKIGVKINEKNGKIPVNDVEQTNV--------PHVYAIGDILDGKP 456
               +A GR   T K+GL+K G  I    G + V++  +            H+Y IGD  +G  
Sbjct: 1712915 VATGRVPNTGKLGLDKHG--IETPRGFVQVDETMRVLAGPGGAVADEHLYCIGDA-NGIQ 1712745

Query: 457     ELTPVAIQAGKLLARRLFGVSLEKCDYINIPTTVFTPLEYGCCGLSEEKAIEMYKKENLE 516
                L   A   G      + G      ++ +IP   FT  E    G+ E+ A +  + E  E
Sbjct: 1712744 MLAHTASTQGVSAIENICGRK-HVVNHEDIPAACFTHPEVAQVGIDEDAAKDRAEAEGFE 1712568

Query: 517     VYHTL-FWPLEWTVAGRDNNTCYAKIICNKFDNERVVGFHLLGPNAGEITQGFAAAMKCG 575
               +   +  +               AK++ NK D E+++G H++G +A ++ Q  A A   G
Sbjct: 1712567 LGKAVGHFRANSKALAEGEGDGIAKVLFNK-DTEQILGVHIIGLHAADLIQECANAKAAG 1712391

Query: 576     LTKQLLDDTIGIHPTCGEV 594
                T + L  T   HPT  EV
Sbjct: 1712390 TTVRELAFTTHTHPTLSEV 1712334



 Score = 30.8 bits (68), Expect = 5.6,   Method: Composition-based stats.
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -3

Query: 171     LGGTCVNVGCIPKKLMHQAA 190
               +GGTCVN GC+P K +  A+
Sbjct: 1713702 VGGTCVNRGCVPSKALLAAS 1713643


>scaffold_41
          Length = 407180

 Score =  219 bits (559), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 162/466 (34%), Positives = 227/466 (48%), Gaps = 11/466 (2%)
 Frame = +1

Query: 144    AKEAANLGKKVMVLD---FVVPSPQGTTWGLGGTCVNVGCIPKKLMHQAA-----LLGHA 195
              A+ AA  G +V+++D       S + T  G GGTCVNVGC+PKK+M+ AA      LG  
Sbjct: 241072 ARRAAGYGARVLLVDKGPTRDASGKRTGAGFGGTCVNVGCVPKKIMYNAAHCRESALG-P 241248

Query: 196    LQDAKKYGWEYNQQVKHNWEAMTEAIQSHIGSLNWGYRVTLREKGVTYVNSFGEFVDLHK 255
                 A   G   +     +W A+     +++  LN  Y    ++ GV  +     FVD   
Sbjct: 241249 TATAAGLGVSLSGGAV-DWAALKRRRDAYVAGLNAAYERNWKKAGVEVLVGAASFVDART 241425

Query: 256    IKATNKKGQETFYTASKFVIATGERPRYLGIQGDKEYCITSDDLFSLPYCPGCTLVVGAS 315
              I     +     Y A + V+A G  P  L I G     + SDD F L   P    VVGA 
Sbjct: 241426 IAVDGNR-----YAADEVVVAVGGAPASLDIPGGA-LAVDSDDFFDLEDLPKKVCVVGAG 241587

Query: 316    YVGLECAGFLAGLGLDVTVMVR--SVLLRGFDQEMAEKVGSYLEQQGVKFQRKFTPILVQ 373
              Y+ +E AG L GLG D  +  R  +VL RGFD  + E +   LE  G    R+ TP  V 
Sbjct: 241588 YIAVELAGILHGLGSDADLAFRGDTVLRRGFDPFVVETIMGELEAHGPNLVRRATPAAVV 241767

Query: 374    QLEKGLPGKLKVVAKSTEGPETVEGIYNTVLLAIGRDSCTRKIGLEKIGVKINEKNGKIP 433
              +      GKL +     E    + G Y+ V+ A+GR   T  + LE  GV ++ + G++ 
Sbjct: 241768 EER----GKLTL---ELEDGRRLAG-YDAVVAAVGRAPATAALRLENAGVAVDAR-GRVI 241920

Query: 434    VNDVEQTNVPHVYAIGDILDGKPELTPVAIQAGKLLARRLFGVSLE-KCDYINIPTTVFT 492
              V+D + ++   VYA+GD  D   ELTPVAI AG+ LA RLFG     + DY +I T VF+
Sbjct: 241921 VDDYQNSSARGVYAVGDACDRGYELTPVAIAAGRRLADRLFGGEPRARLDYADISTVVFS 242100

Query: 493    PLEYGCCGLSEEKAIEMYKKENLEVYHTLFWPLEWTVAGRDNNTCYAKIICNKFDNERVV 552
                  G  GL+E  A   Y   ++ V  + F  + + + G       A  +      ERVV
Sbjct: 242101 HPPIGVVGLTEPAARARYG--DVAVKESRFPSMAFALNGAGAKVTTALKLVLAGPEERVV 242274

Query: 553    GFHLLGPNAGEITQGFAAAMKCGLTKQLLDDTIGIHPTCGEVFTTL 598
              G HL+GP + E+ QGFA A+K G T+  L+  + IHPT  E   T 
Sbjct: 242275 GLHLVGPGSDEMLQGFAVALKMGATRSDLEAAVAIHPTVAEELVTF 242412


>scaffold_9
          Length = 1602328

 Score =  107 bits (266), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 97/378 (25%), Positives = 169/378 (44%), Gaps = 6/378 (1%)
 Frame = -3

Query: 233     RVTLREKGVTYVNSFGEFVDLHKIKATNKKGQETFYTASKFVIATGERPRYLG---IQGD 289
               R   ++  V Y+   G     + +      G      +   +IATG  P  L    +   
Sbjct: 1366250 RFLFKKYKVDYLQGHGTITGPNSVAVALNDGGSEAVESKNILIATGSEPSPLPPCPVDNA 1366071

Query: 290     KEYCITSDDLFSLPYCPGCTLVVGASYVGLECAGFLAGLGLDVTVM-VRSVLLRGFDQEM 348
                   + S     L   P    VVG   +GLE       LG  VTV+     ++ G D+E+
Sbjct: 1366070 GGKIVDSTGALVLDKIPKTMAVVGGGVIGLEMGSVWRRLGTKVTVVEYLGNIVPGVDKEV 1365891

Query: 349     AEKVGSYLEQQGVKFQRKFTPILVQQLEKGLPGKLKVVAKSTEGPETVEGIYNTVLLAIG 408
                +     L++QG+KF+     +  + ++ G+  +L          ET +  ++ VL+A G
Sbjct: 1365890 GKAFLRVLKKQGMKFKLNTGVVASEVVDGGV--ELTHAPAKDPSKETTDR-FDVVLVATG 1365720

Query: 409     RDSCTRKIGLEKIGVKINEKNGKIPVNDVEQTNVPHVYAIGDILDGKPELTPVAIQAGKL 468
               R   T K+GL+ +G++  +K G++ V++  +T +P +YA GD++DG P L   A + G  
Sbjct: 1365719 RRPFTDKLGLDALGIE-TDKLGRVVVDEHFKTKIPSIYAFGDVVDG-PMLAHKAEEEGIA 1365546

Query: 469     LARRLFGVSLEKCDYINIPTTVFTPLEYGCCGLSEEKAIEMYKKENLEVYHTLFWPLEWT 528
                   + G +    +Y  IP  ++T  E    G +EE+     K E ++ Y    +P    
Sbjct: 1365545 CVESIAGFA-GHVNYDVIPGVIYTHPELATAGKTEEQ----LKDEGVD-YVVGSFPFSAN 1365384

Query: 529     VAGR--DNNTCYAKIICNKFDNERVVGFHLLGPNAGEITQGFAAAMKCGLTKQLLDDTIG 586
                  R   ++    K++C+K   +R++G H++GPNAGE+       M+ G + + +  T  
Sbjct: 1365383 SRARAVGDSEGLVKVLCDK-ATDRILGVHIIGPNAGEMIAEGVLGMEYGASSEDIARTCH 1365207

Query: 587     IHPTCGEVFTTLEITKSS 604
                HPT  E      +  SS
Sbjct: 1365206 AHPTLSEAMKEACMAASS 1365153



 Score = 79.7 bits (195), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 118/437 (27%), Positives = 186/437 (42%), Gaps = 15/437 (3%)
 Frame = +2

Query: 172    GGTCVNVGCIPKKLMHQAALLGHALQDAKKYGWEYNQQVKHNWEAMTEAIQSHIGSLNWG 231
              GG C+NVGC+P K + + A      +   ++G +    V  ++ A+ E ++     +   
Sbjct: 798026 GGDCLNVGCVPSKALLRCARAAREARRGAEFGVD-GAAVAVDFGAVMERMRRLRARIAPA 798202

Query: 232    YRVTLREKGVTYV-NSFGEFVDLHKIKATNKKGQETFYTASKFVIATGERPRYLGIQGDK 290
                          V    G FV  ++I+     GQ   +   K V+ATG +     I G  
Sbjct: 798203 DAHAATAAVGADVFQGRGVFVGPNEIEVN---GQTLKF--RKAVVATGGQAAVPSIPGLA 798367

Query: 291    EYCI-TSDDLFSLPYCPGCTLVVGASYVGLECAGFLAGLGLDVTVMVRSV-LLRGFDQEM 348
              E    T+  LF+    P   +VVGA  +GLE A  LA  G  VT ++RS  +L   D + 
Sbjct: 798368 EAPYHTNATLFNATALPPRVVVVGAGPIGLEMAQALAVFGSKVTCVLRSAKVLPKEDPDA 798547

Query: 349    AEKVGSYLEQQGVKFQRKFTPILVQQLEKGLPGKLKV-----VAKSTEGPETVEGIYNTV 403
              A  V + LE+ GV F    T    +++E   P K        VA   +G ET       +
Sbjct: 798548 AALVRAALERDGVAF---VTGAAYKRVEHAPPKKGAAFPTIGVAVDVDGAETRLEC-EML 798715

Query: 404    LLAIGRDSCTRKIGLEKIGVKINEKNGKIPVNDVEQTNVPHVYAIGDILDGKPELTPVA- 462
              L+A GR       GL+K GV  + ++G + V+D  +T  P VYA+GD+   + + T VA 
Sbjct: 798716 LVATGRKPNVEHCGLDKAGVAFDVRDG-VQVDDYLRTTNPDVYAVGDVCT-RYQFTHVAG 798889

Query: 463    IQAGKLLARRLFGVSLEKCDYINIPTTVFTPLEYGCCGLSEEK------AIEMYKKENLE 516
                AG ++   LF         + +P   +T  E    GL E        A + Y      
Sbjct: 798890 TMAGMVVDNALFR-GRHAFSKLVVPWATYTEPEVAHVGLYERDVASQGLACDTY---TTA 799057

Query: 517    VYHTLFWPLEWTVAGRDNNTCYAKIICNKFDNERVVGFHLLGPNAGEITQGFAAAMKCGL 576
              + H     LE    G      + K+ C K  +E ++G  ++  +AGE+      A++  +
Sbjct: 799058 LAHNDRAILEGATEG------FVKVHCRKGTDE-ILGATIVADHAGELISELTLAIQANV 799216

Query: 577    TKQLLDDTIGIHPTCGE 593
                  +  TI  +PT  E
Sbjct: 799217 GLGTIGKTIHPYPTVSE 799267


>scaffold_3
          Length = 3001400

 Score = 84.3 bits (207), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 115/471 (24%), Positives = 203/471 (43%), Gaps = 24/471 (5%)
 Frame = +2

Query: 147     AANLGKKVMVLDFVVPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGHALQDAKKYGWEY 206
               A +LGKK ++++            +GG C+NVGC P K +   A   H L+ A  +G   
Sbjct: 2787653 AKSLGKKALLIE---------KHYMGGDCLNVGCFPSKALIACARKCHELKHAADFGVTV 2787805

Query: 207     NQQVKHNW-------EAMTEAIQSHIGSLNWGYRVTLREKGVTYVNSFGEFVDLHKIKAT 259
               +  V  ++        A+   I  H G   +G     R+          +F    ++  T
Sbjct: 2787806 SGDVTVDFGFVMKRMRALRAGIAPHDGVERYG-----RDFCDDVCVGVAKFASPTEVVIT 2787970

Query: 260     NKKGQETFYTASKFVIATGERPRYLGIQGDKEYC--ITSDDLFSLPYCPGCTLVVGASYV 317
               +  G+       K +IATG     + + G ++ C  +T+ + F+L   P    ++GA  +
Sbjct: 2787971 SHGGETQSVAFDKCMIATGASAAVVPVPGLRD-CPHLTNGNFFNLEALPPRACLIGAGPI 2788147

Query: 318     GLECAGFLAGLGLDVTVM-VRSVLLRGFDQEMAEKVGSYLEQQGVK--FQRKFTPI-LVQ 373
               G+E A  L   G  VT+  V   LL   D + A+ V   L   GV+  +  K T I L  
Sbjct: 2788148 GIEMAQSLQRFGCAVTIFEVAPQLLPREDPDAAKLVTEALIADGVEVHYAVKITGIKLAG 2788327

Query: 374     QLEKGLPGKLKVVAKS-TEGPETV---EGIYNTVLLAIGRDSCTRKIGLEKIGVKINEKN 429
               +L    P     V+ + ++G   V   E + N    A GR      IGL++ GV  + + 
Sbjct: 2788328 ELAMKAPWPTYDVSVTLSDGTAKVFQCEALLN----ATGRAPNVSGIGLDEAGVDYDTRT 2788495

Query: 430     GKIPVNDVEQTNVPHVYAIGDILDGKP-ELTPVAIQAGKLLARRLFGVSLEKCDYINIPT 488
               G + ++D+ +T+ P++Y+ GD     P + T  A    +   R +F  +  K   + +P 
Sbjct: 2788496 G-VHISDLYETSAPNIYSCGDC--ASPYKFTHAADWQARCAVRNMFLQANSKHSDLLVPW 2788666

Query: 489     TVFTPLEYGCCGLSEEK------AIEMYKKENLEVYHTLFWPLEWTVAGRDNNTCYAKII 542
                 +T  E    GL E++      A + Y ++  +V        E   +G      + KI 
Sbjct: 2788667 ATYTDPEIAHVGLYEKEMDDKGIAYDTYVRQFKDVDRC---KCEGVTSG------FVKIS 2788819

Query: 543     CNKFDNERVVGFHLLGPNAGEITQGFAAAMKCGLTKQLLDDTIGIHPTCGE 593
               C K  +++++G  ++GP AG++       M+ G+  + +   +  +PT  E
Sbjct: 2788820 CAK-GSDQILGSTIVGPCAGDLISEITVCMQNGIGCKDIAGVMHPYPTTAE 2788969


>scaffold_28
          Length = 481284

 Score = 48.1 bits (113), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 40/72 (55%)
 Frame = +1

Query: 35     IEGNRVMIFSKSYCPHSTRVKELFSSLGVVYNILELDQVDDGASVQEVLTEISNQKTVPN 94
              I G  V++ S    P   + K+L  + G  Y ++ELD+V DG +++  L  +  + +VP 
Sbjct: 285631 IAGEPVLMLSFVR*PFCVKAKQLLDAKGAKYTVVELDEVSDGPALRAELGGLVGRTSVPA 285810

Query: 95     IFVNKVHVGGCD 106
              I++    VGGC+
Sbjct: 285811 IWIQSDFVGGCN 285846


>scaffold_7
          Length = 2177197

 Score = 47.4 bits (111), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 84/352 (23%), Positives = 140/352 (39%), Gaps = 12/352 (3%)
 Frame = +2

Query: 237     REKGVTYVNSFGEFV--DLHKIKATNKKGQETFYTASKFVIATGERPRYLGIQGDKEYCI 294
               R   ++  +   EFV  D  ++ A   + +  F   +  ++ATG  P    + G +E   
Sbjct: 1395992 RHPNLSVFSGTAEFVSEDCVEVAADGDRRRLAF---AHCIVATGASPALPDVPGLREAPY 1396162

Query: 295     -TSDDLFSLPYCPGCTLVVGASYVGLECAGFLAGLGLDVTVMVRSVLLRGFDQEMAEKVG 353
                T    +     P   +V+G      E A  L+ LG  V +  R   L   D   A  V 
Sbjct: 1396163 RTHLSWYDCEELPRRAVVLGGGPQAAETAQALSVLGCRVCLAARGEFLPREDAAAASVVR 1396342

Query: 354     SYLEQQGVKF--QRKFTPILVQQLEKGLPGKLKVVAKSTEGPETVEGIY---NTVLLAIG 408
                 LE  GV+      F  + V + E  LP  + V  + T      E      + +L+A G
Sbjct: 1396343 RELEADGVEILTNVSFVAVSVDEAE-ALP--VGVAIRETNDFYASEKRVLRCDALLVAAG 1396513

Query: 409     RDSCTRKIGLEKIGVKINEKNGKIPVNDVEQTNVPHVYAIGDILDGKPELTPVAIQAGKL 468
               R      +GL+  GV  + +NG I V+ + +T+ P ++A GD+  G          A   
Sbjct: 1396514 RKPRVAGLGLDAAGVAYDAQNG-IRVDGMLRTSNPRIFAAGDVASGYQHAHAAVAMAAAA 1396690

Query: 469     LARRLFGVSLEKCDY--INIPTTVFTPLEYGCCGLSEEKAIEMYKKENLEVYHTLFWPLE 526
               +   LFG      D+  + +P    T  E    GL E            +VY T    ++
Sbjct: 1396691 VENALFG---GDADFGAVLLPWVTHTAPELAHVGLYERDV-----AGGCDVYETDLAHVD 1396846

Query: 527     WTVAGRDNNTCYAKIICNKFDNERVVGFHLLGPNAGEITQGFAAAM--KCGL 576
                 +   D      +++  +  +E ++G  ++ P+AG++    A AM  K GL
Sbjct: 1396847 RAILDGDEGG-LVRVVTARGSDE-ILGATVVAPHAGDLIAEIAVAMHGKLGL 1396996



 Score = 37.0 bits (84), Expect = 0.083,   Method: Composition-based stats.
 Identities = 45/192 (23%), Positives = 86/192 (44%), Gaps = 14/192 (7%)
 Frame = -1

Query: 274    VIATGERPRYLGIQGDKEYCI----TSDDL-----FSLPYCPGCTLVVGASYVGLECAGF 324
              V+ATG  P    ++G     +    T DDL     +   +      VVG   +GLE A  
Sbjct: 390970 VLATGSYPFVPPVEGKDLDGVFVYRTVDDLERLVAYQEAHGVTAAAVVGGGLLGLEAAKA 390791

Query: 325    LAGLGLDVTVMVRSVLL--RGFDQEMAEKVGSYLEQQGVKFQRKFTPILVQQLEKGLPGK 382
              +  LG+   ++  + +L  R  D      + S +E  G++          +  E G  G+
Sbjct: 390790 MHDLGMKTHILEYAPILMCRQIDAGGHAALASMVEDLGLEIH---CDARTKAFEAGADGR 390620

Query: 383    LKVVAKSTEGPETVEGIYNTVLLAIG---RDSCTRKIGLEKIGVKINEKNGKIPVNDVEQ 439
              +  V+ + EG + ++     V+++ G   RD   R +      V ++E+ G + V+D  +
Sbjct: 390619 VAGVSFTNEGWDDLD--VGIVVVSAGIRPRDELARDV------VDVHERGGVV-VDDELR 390467

Query: 440    TNVPHVYAIGDI 451
              T+ P ++A+G++
Sbjct: 390466 TSDPAIFAVGEV 390431


>scaffold_10
          Length = 1654512

 Score = 47.4 bits (111), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 88/359 (24%), Positives = 138/359 (38%), Gaps = 31/359 (8%)
 Frame = +1

Query: 239    KGVTYVNSFGEFVDLH-KIKATNKKGQE-TFYTASKFVIATGERP-RYLGIQGD------ 289
              +G   V   G  V++  K + T K G   T       V+ATG R  R+ G+  D      
Sbjct: 697924 RGFGVVKPVGGAVEVDVKFRRTTKGGSAGTTVRGKHCVVATGSRAVRFDGLDYDGADAAG 698103

Query: 290    KEYCITSDDLFSLPYCPGCTLVVGASYVGLECAGFLAGLGLDVTVMVRSVLLR------G 343
              +     SD +  L + P   ++VG   + +E A   A L  DVT++VRS  L       G
Sbjct: 698104 RRRVYDSDSVKGLSFLPRRVVIVGGGIIAVEYARIFAALAADVTLVVRSADLPKSLRRVG 698283

Query: 344    FDQEMAEKVGSYLEQQGVKFQRKFTPILVQQLEKGLPGKLKVVAKSTEGPETVEGIYNTV 403
               D  +A  + + L   GV        IL +    G       VA +     T+E   + +
Sbjct: 698284 IDAGLAGALQADLRDAGVD-------ILFETEIAGAALAGAAVAVALRDGRTLEA--DVL 698436

Query: 404    LLAIGRDSCTRKIGLEKIGVK-INEKNGKIPVNDVEQTNVPHVYAIGDILDGKPELTPVA 462
              L A GR + TR +  +   V  +   NG + V+   +T    V   GD++ G P+L    
Sbjct: 698437 LTATGRAAVTRGVFDDAALVDGLLAPNGDLLVDGELKTVHRAVSGAGDVV-GAPQLASTG 698613

Query: 463    IQAGKLLARRLFGVSLEKCDY---------INIPTTVFTPLEYGCCGLSEEKAIEMYKKE 513
              I   +     ++G      D             P  ++T  E   CGL+ E A +     
Sbjct: 698614 IAQAEAAVDCVYGDGCALGDVSPAGLLASTARYPVGIWTVPELAFCGLTAEAAADRGLDV 698793

Query: 514    NLEVYHTLFWPLEWTVAGR------DNNTCYAKIICNKFDNERVVGFHLLGPNAGEITQ 566
               + V H        TV G          +C  K++  +     ++G HL G +A E+  
Sbjct: 698794 VVGVAH-----YADTVRGHVRESDASTRSCL-KLVVARDAPHTILGVHLFGDDAAELVH 698952


>scaffold_1
          Length = 3520325

 Score = 46.2 bits (108), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/84 (28%), Positives = 41/84 (48%)
 Frame = +2

Query: 35      IEGNRVMIFSKSYCPHSTRVKELFSSLGVVYNILELDQVDDGASVQEVLTEISNQKTVPN 94
               +  + V++F K  CP+  +  E     G     ++   V     VQ+ L  ++ ++TVPN
Sbjct: 2060630 VAAHDVVVFHKPRCPYCRKAFEALRRAGAEPRAID---VSRRPGVQDALAAMTGRRTVPN 2060800

Query: 95      IFVNKVHVGGCDRTFQAHQNGLLQ 118
               +F+    VGG D T    +NG L+
Sbjct: 2060801 VFIGGASVGGGDETVALRRNGELR 2060872



 Score = 37.7 bits (86), Expect = 0.048,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 48/93 (51%), Gaps = 5/93 (5%)
 Frame = +3

Query: 35      IEGNRVMIFSKS-----YCPHSTRVKELFSSLGVVYNILELDQVDDGASVQEVLTEISNQ 89
               ++ N VM+F K       C  S    ++ +++G  +     D + D  +V+  + E S+ 
Sbjct: 2069904 VDDNTVMLFMKGTKIFPQCGFSNMAVQILNAIGQDFETY--DCLSD-ENVRSTIKEFSDW 2070074

Query: 90      KTVPNIFVNKVHVGGCDRTFQAHQNGLLQKLLQ 122
                T+P ++V+   VGG D   + ++ G LQ++++
Sbjct: 2070075 PTIPQLYVDGEFVGGSDIMLEMYEAGELQEMIE 2070173


>scaffold_15
          Length = 987846

 Score = 44.7 bits (104), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 38/65 (58%)
 Frame = -2

Query: 40     VMIFSKSYCPHSTRVKELFSSLGVVYNILELDQVDDGASVQEVLTEISNQKTVPNIFVNK 99
              V +++ + CP   + KEL    G  Y  + LD+ +DGA+++  L + + + +VP +++  
Sbjct: 741398 VTMYTFTSCPFCKKAKELLDDKGATYTEIALDEREDGAALRARLGKRTGRTSVPAVWIGD 741219

Query: 100    VHVGG 104
               +VGG
Sbjct: 741218 EYVGG 741204



 Score = 30.4 bits (67), Expect = 8.1,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 11/67 (16%)
 Frame = +2

Query: 38     NRVMIFSKSYCPHSTRVKELFSSL-GVVYNILELDQVDD-------GAS---VQEVLTEI 86
              + V++FSKSY P++    +L  +L G+   ++ELDQ+ +       G S   V+ +L   
Sbjct: 211346 DTVVVFSKSY*PYAQNTLKLLRALPGLRLEVMELDQMGEPRASPRPGGSPFRVRALLPTR 211525

Query: 87     SNQKTVP 93
               +Q T P
Sbjct: 211526 DSQATAP 211546


>scaffold_13
          Length = 1338096

 Score = 42.7 bits (99), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 47/93 (50%), Gaps = 8/93 (8%)
 Frame = +3

Query: 35      IEGNRVMIFSKS-----YCPHSTRVKELFSSLGVVY---NILELDQVDDGASVQEVLTEI 86
               ++GN VM++ K       C  S +V  +  + GV +   N+LE D + +G      + E 
Sbjct: 1041108 VDGNTVMLYMKGTPARPQCGFSQQVCRILHATGVEFASVNVLEDDALREG------IKEF 1041269

Query: 87      SNQKTVPNIFVNKVHVGGCDRTFQAHQNGLLQK 119
               S   T+P ++V    VGGCD   ++ Q+G L +
Sbjct: 1041270 SEWPTIPQLYVGGEFVGGCDIVTESFQSGELDE 1041368


>scaffold_5
          Length = 3000003

 Score = 41.6 bits (96), Expect = 0.003,   Method: Composition-based stats.
 Identities = 32/92 (34%), Positives = 43/92 (46%), Gaps = 7/92 (7%)
 Frame = -3

Query: 268    YTASKFVIATGERPRYLGIQGDKEY-------CITSDDLFSLPYCPGCTLVVGASYVGLE 320
              +T S  V+ATG  PR+LG  G++E        C T D  F   Y     +VVG     +E
Sbjct: 719809 FTTSALVVATGASPRWLGAPGERELLSRGVHTCATCDGYF---YRDRDVVVVGGGDTAME 719639

Query: 321    CAGFLAGLGLDVTVMVRSVLLRGFDQEMAEKV 352
               A FLA +   V V+ R    R   + MA +V
Sbjct: 719638 QALFLARIANRVYVVHRKNSFRA-SKAMATRV 719546


>scaffold_641
          Length = 6574

 Score = 30.0 bits (66), Expect(2) = 0.008,   Method: Composition-based stats.
 Identities = 14/39 (35%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
 Frame = -2

Query: 38   NRVMIFSKSYCPHSTRVKELFSSL-GVVYNILELDQVDD 75
            + V++FSKSY P++    +L  +L G+   ++ELDQ+ +
Sbjct: 6330 DTVVVFSKSY*PYAQNTLKLLRALPGLRLEVMELDQMGE 6214



 Score = 28.9 bits (63), Expect(2) = 0.008,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -1

Query: 79   VQEVLTEISNQKTVPNIFVNKVHVGGCD 106
            VQ++L   S + +VP +FVN   +GG D
Sbjct: 6130 VQQLLKARSGRTSVPQVFVNDAFLGGND 6047


>scaffold_6
          Length = 2755913

 Score = 38.1 bits (87), Expect = 0.032,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
 Frame = -2

Query: 270    ASKFVIATGERP-RYLGIQGDKEYCITSDDLFSLPYCPGCTLVVGASYVGLECAGFLAGL 328
               +K ++  G  P R  G+  D      +D + +L + P   ++VG+  + +E A     L
Sbjct: 944947 GAKLLVCCGSVPMRVGGVPFDGRRVFDADSINTLGFLPKSVVIVGSGIIAIEYAMIFRKL 944768

Query: 329    GLDVTVMVRSVLLRGFDQ 346
              G  VT++VRS +    D+
Sbjct: 944767 GAAVTMLVRSSMTSALDR 944714


>scaffold_16
          Length = 966663

 Score = 35.4 bits (80), Expect = 0.20,   Method: Composition-based stats.
 Identities = 53/205 (25%), Positives = 82/205 (40%), Gaps = 16/205 (7%)
 Frame = -1

Query: 265    ETFYTASKFVIATGERPRYLGIQGDKEY-------CITSDDLFSLPYCPGCTLVVGASYV 317
              E   +A   ++ATG   R+LG+ G+ E+       C T D      Y      V+G    
Sbjct: 736617 EANISAHTLIVATGADSRWLGVAGESEFKGGGVSSCATCDGFL---YRDRDVAVIGGGDT 736447

Query: 318    GLECAGFLAGLGLDVTVMVRSVLLRGFDQEMAEKVGSYLEQQGVKFQRKFTPILV----Q 373
               +E A  LA     VTV+ R    R   + MA +V   LE   ++ +   T        +
Sbjct: 736446 AMEDALVLARTSAKVTVVHRRDAFRA-SKAMATRV---LEHPKIEVRWNATVASFSGTHE 736279

Query: 374    QLE-----KGLPGKLKVVAKSTEGPETVEGIYNTVLLAIGRDSCTRKIGLEKIGVKINEK 428
              +LE     K +    +V   ST   E          +AIG D  T K+  +++ VK +  
Sbjct: 736278 ELEMEDGVKDIATLTRVHLTSTASGEASALDVAAAFVAIGHDPNT-KLFADQLVVKPSGY 736102

Query: 429    NGKIPVNDVEQTNVPHVYAIGDILD 453
                        + +VP V+A GD+ D
Sbjct: 736101 LELAGSKFATELSVPGVFAAGDVAD 736027


>scaffold_2
          Length = 3465789

 Score = 30.4 bits (67), Expect = 6.6,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 29/65 (44%), Gaps = 11/65 (16%)
 Frame = +1

Query: 307     GCTLVVGASYVGLECAGFLAGLGLDVTVMVRSVL--------LRGFDQEMAEKV---GSY 355
               G   VVG S  GL  A  LA  G +VTV  R           L G D+++ E +   G+ 
Sbjct: 2934865 GSVAVVGGSIAGLAAANVLAQRGFEVTVFERFPTGFESRGGGLGGVDRQLYESIRADGAT 2935044

Query: 356     LEQQG 360
               L Q G
Sbjct: 2935045 LRQHG 2935059


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000090_1.0 # Protein # Thioredoxin reductase 1 (TR1) #
Drosophila melanogaster # Complete
         (596 letters)

Database: genome.fa 
           1185 sequences; 56,660,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

scaffold_11                                                           376   e-104
scaffold_8                                                            231   3e-60
scaffold_41                                                           208   2e-53
scaffold_9                                                            105   1e-22
scaffold_3                                                             72   1e-12
scaffold_7                                                             51   4e-06
scaffold_10                                                            41   0.004
scaffold_12                                                            34   0.46 
scaffold_4                                                             33   1.0  
scaffold_5                                                             32   2.7  
scaffold_2                                                             31   4.5  

>scaffold_11
          Length = 1405779

 Score =  376 bits (965), Expect = e-104,   Method: Composition-based stats.
 Identities = 217/489 (44%), Positives = 296/489 (60%), Gaps = 10/489 (2%)
 Frame = -3

Query: 108    TKGGSYDYDLIVIGGGSAGLACAKEAVLNGARVACLDFVKPTPTLGTKWGVGGTCVNVGC 167
              TK   +DYD++V+GGGS GLAC+KE    GA+VA LDFVKP+P  G+ WG+GGTCVNVGC
Sbjct: 788005 TKEHGFDYDVVVVGGGSGGLACSKECAKLGAKVAVLDFVKPSPA-GSTWGLGGTCVNVGC 787829

Query: 168    IPKKLMHQASLLGEAVHE-AAAYGWNVDEKIKPDWHKLVQSVQNHIKSVNWVTRVDLRDK 226
              IPKKLMH AS++GE + + AAA+GW        DW  +  +VQ+HIKS+N+  RV LR+ 
Sbjct: 787828 IPKKLMHTASIIGETLKDDAAAFGWKDAAAGAHDWESMKSTVQDHIKSLNFKYRVALREA 787649

Query: 227    KVEYINGLGSFVDSHTLLAKLKSGERT-ITAQTFVIAVGGRPRYPDIPGAVEYGITSDDL 285
               + Y+N LG F D +T+    K G +T +TA  F++AVGGRP     PG  E+ I SDDL
Sbjct: 787648 GITYLNRLGEFEDKNTISLTDKKGNKTSVTAARFIVAVGGRPNKLGCPGG-EHAIDSDDL 787472

Query: 286    FSLDREPGKTLVVGAGYIGLECAGFLKGLGYEPTVMVRSIVLRGFDQQMAELVAASMEER 345
              FSL + PG+ L VG GYI LEC GF  G+GY  T MVRSI+LRGFD++    + A ++  
Sbjct: 787471 FSLPKAPGRVLCVGGGYIALECGGFTAGMGYPTTCMVRSILLRGFDRECVGKIEAHIKHH 787292

Query: 346    GIPFLRKTVPLSVEKQDDGKLLVKYKNVETGEEAEDVYDTVLWAIGRKGLVDDLNLPN-- 403
              G+       P  +EK     +L      ++G    + YDTVL A GR      L + N  
Sbjct: 787291 GVQLQVGVTPAKIEKDAATGVLTV---TDSGGGVHE-YDTVLVATGRYADTAALGIDNVP 787124

Query: 404    ---AGVTVQKDKIPVDSQEATNVANIYAVGDIIYGKPELTPXXXXXXXXXXXXXXXXSTQ 460
                 A V  +  K+    ++     ++YA+GD++ G+PELTP                 T+
Sbjct: 787123 GASANVNAKTKKLECVDEQLPGAPHVYAIGDVVEGRPELTPVAIEAGLRLARRLFGGKTE 786944

Query: 461    RMDYKDVATTVFTPLEYACVGLSEEDAVKQFGADEIEVFHGYYKPTEFFIPQ-KSVR--Y 517
               MDY+ VATT+FTPLEY  +GLSE+DA  Q G   +E +   + P E+ + + +S R   
Sbjct: 786943 PMDYECVATTIFTPLEYGTIGLSEDDAKAQLGECNVESYISEFAPLEYALSETRSERGDG 786764

Query: 518    CYLKAVAERHGDQRVYGLHYIGPVAGEVIQGFAAALKSGLTINTLINTVGIHPTTAEEFT 577
              C+ K V ++    +V G HY+GP AGE+ QGF+ A++ G T    I+TVGIHPT AEEFT
Sbjct: 786763 CFAKLVVDK-STGKVVGFHYLGPNAGEITQGFSIAMRKGATYADFISTVGIHPTVAEEFT 786587

Query: 578    RLAITKRSG 586
               + +TK SG
Sbjct: 786586 SMTVTKSSG 786560


>scaffold_8
          Length = 1961717

 Score =  231 bits (588), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 166/498 (33%), Positives = 247/498 (49%), Gaps = 12/498 (2%)
 Frame = -2

Query: 95      RAAMYAQPVRKMSTKGGSYDYDLIVIGGGSAGLACAKEAV-LNGARVACLDFVKPTPTLG 153
               RA +  +P R ++     + +D +VIG GS G+A AK A  ++G +VA ++         
Sbjct: 1269343 RAPLRPRPTRTLAMAAKEH-FDYLVIGAGSGGIASAKRAAQVHGKKVAVVE--------- 1269194

Query: 154     TKWGVGGTCVNVGCIPKKLMHQASLLGEAVHEAAAYGWNVDEKIKPDWHKLVQSVQNHIK 213
                +  +GGTCVNVGC+PKK+M  A+ + E +H+A  Y ++  E +K DW KL  +  N++ 
Sbjct: 1269193 -RGALGGTCVNVGCVPKKVMFNAAHIMECLHDAPLYQYSGAEDVKLDWGKLKTARDNYVV 1269017

Query: 214     SVNWVTRVDLRDKKVEYINGLGSFVDSHTLLAKLKSGERTITAQTFVIAVGGRPRYPDIP 273
                +N +    L    +  + GL SF D   ++     G    TA   ++AVGG P  P   
Sbjct: 1269016 RLNGIYGRGLDGADITTLTGLASFGDDGEVMV----GGEAYTADHVLVAVGGVPSLPLEL 1268849

Query: 274     GAVEYGITSDDLFSLDREPGKTLVVGAGYIGLECAGFLKGLGYEPTVMVR-SIVLRGFDQ 332
                  E+ ITSD  F L+  P   LVVGAGYI +E AG L  LG + T+ VR    LR FD+
Sbjct: 1268848 EGGEHTITSDGFFELEAMPESCLVVGAGYIAVEMAGILNALGCDTTLAVRGDKALRAFDE 1268669

Query: 333     QMAELVAASMEERGIPFLRKTVPLSVEKQDDGKLLVKYKNVETGEEAEDVYDTVLWAIGR 392
                ++  + A M+  G+     T    VE  D  K++        G      +D VL A+GR
Sbjct: 1268668 LLSTTLDAEMKRAGMKIATGTTLAKVELVDGKKVVTTTDGATLGP-----FDEVLMAVGR 1268504

Query: 393     KGLVDDLNLPNAGVTVQKDK-IPVDS-QEATNVANIYAVGDIIYGKPELTPXXXXXXXXX 450
               K LV+ L L NAGV +  +  + VD  Q  T+  N+YA+GD+  G  ELTP         
Sbjct: 1268503 KPLVEPLKLENAGVDLNDEGYVAVDEYQRTTSEHNVYALGDVC-GAIELTPMAIAAGRRL 1268327

Query: 451     XXXX---XXXSTQRMDYKDVATTVFTPLEYACVGLSEEDAVKQFGADEIEVFHG-----Y 502
                         +  + DY+ V T VF+      +GL+E +A++++G   ++V+       +
Sbjct: 1268326 SDRLFGGPECANAKADYEGVPTVVFSHPTIGTIGLTEAEALEKYGEANVKVWTSTFVNLW 1268147

Query: 503     YKPTEFFIPQKSVRYCYLKAVAERHGDQRVYGLHYIGPVAGEVIQGFAAALKSGLTINTL 562
               Y P       K      L        ++ V GLH IG  A E++QGF  A+K G T    
Sbjct: 1268146 YGPMPIDPSDKPKTAMKLVTAG---ANELVVGLHVIGLGADEMLQGFGVAMKMGATKADF 1267976

Query: 563     INTVGIHPTTAEEFTRLA 580
                + + +HPT AEEF  LA
Sbjct: 1267975 DSCIALHPTAAEEFVTLA 1267922



 Score = 72.8 bits (177), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 94/379 (24%), Positives = 160/379 (42%), Gaps = 32/379 (8%)
 Frame = -1

Query: 228     VEYINGLGSFVDSHTLLAKLKSGERTITAQTFVIAVGGRPRYPDIPGAV---EYGITSDD 284
               VE I   G++   +T+  +L +G++ +TAQ  ++A G  P  P  PG     E   TSD+
Sbjct: 1713404 VELIPEFGAYGGPNTV--ELGNGKK-VTAQDIILAPGSVPFVP--PGVTIDGETVYTSDE 1713240

Query: 285     LFSLDREPGKTLVVGAGYIGLECAGFLKGLGYEPTVM-VRSIVLRGFDQQMAE------L 337
                  L+  P    ++G+G IGLE +     LG E T++     ++  FD+++A+      L
Sbjct: 1713239 GLRLEHVPEYCAIIGSGIIGLEFSDVYTALGSECTLIEALPKLMPAFDREIAKQAERLLL 1713060

Query: 338     VAASMEERGIPFLRKTVPLSVEKQDDGKLLVKYKNVETGEEAEDV-YDTVLWAIGRKGLV 396
                   ++ R   F  K  P    K  +  ++++  + ET E  E +  DT + A GR    
Sbjct: 1713059 TPRGIDYRTGVFASKVTP---GKLGEKPVVIEMIDAETKELVEVLEVDTCMVATGRVPNT 1712889

Query: 397     DDLNLPNAGVTVQKDKIPVDSQE--------ATNVANIYAVGDIIYGKPELTPXXXXXXX 448
                 L L   G+   +  + VD           A    ++Y +GD      ++         
Sbjct: 1712888 GKLGLDKHGIETPRGFVQVDETMRVLAGPGGAVADEHLYCIGDA--NGIQMLAHTASTQG 1712715

Query: 449     XXXXXXXXXSTQRMDYKDVATTVFTPLEYACVGLSEEDAVKQFGADEIEVFH--GYYKPT 506
                            ++++D+    FT  E A VG+ E+ A  +  A+  E+    G+++  
Sbjct: 1712714 VSAIENICGRKHVVNHEDIPAACFTHPEVAQVGIDEDAAKDRAEAEGFELGKAVGHFRAN 1712535

Query: 507     EFFIPQKSVRYCYLKAVAERHGD-----------QRVYGLHYIGPVAGEVIQGFAAALKS 555
                             KA+AE  GD           +++ G+H IG  A ++IQ  A A  +
Sbjct: 1712534 S-------------KALAEGEGDGIAKVLFNKDTEQILGVHIIGLHAADLIQECANAKAA 1712394

Query: 556     GLTINTLINTVGIHPTTAE 574
               G T+  L  T   HPT +E
Sbjct: 1712393 GTTVRELAFTTHTHPTLSE 1712337



 Score = 32.7 bits (73), Expect = 1.5,   Method: Composition-based stats.
 Identities = 13/20 (65%), Positives = 15/20 (75%)
 Frame = -3

Query: 158     VGGTCVNVGCIPKKLMHQAS 177
               VGGTCVN GC+P K +  AS
Sbjct: 1713702 VGGTCVNRGCVPSKALLAAS 1713643


>scaffold_41
          Length = 407180

 Score =  208 bits (529), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 165/471 (35%), Positives = 234/471 (49%), Gaps = 9/471 (1%)
 Frame = +1

Query: 115    YDLIVIGGGSAGLACAKEAVLNGARVACLDFVKPTPTLG--TKWGVGGTCVNVGCIPKKL 172
              +D+IV+GGGS G A A+ A   GARV  +D        G  T  G GGTCVNVGC+PKK+
Sbjct: 241027 FDVIVLGGGSGGSAFARRAAGYGARVLLVDKGPTRDASGKRTGAGFGGTCVNVGCVPKKI 241206

Query: 173    MHQASLLGEAV--HEAAAYGWNVD-EKIKPDWHKLVQSVQNHIKSVNWVTRVDLRDKKVE 229
              M+ A+   E+     A A G  V       DW  L +    ++  +N     + +   VE
Sbjct: 241207 MYNAAHCRESALGPTATAAGLGVSLSGGAVDWAALKRRRDAYVAGLNAAYERNWKKAGVE 241386

Query: 230    YINGLGSFVDSHTLLAKLKSGERTITAQTFVIAVGGRPRYPDIPGAVEYGITSDDLFSLD 289
               + G  SFVD+ T+      G R   A   V+AVGG P   DIPG     + SDD F L+
Sbjct: 241387 VLVGAASFVDARTIAV---DGNR-YAADEVVVAVGGAPASLDIPGGA-LAVDSDDFFDLE 241551

Query: 290    REPGKTLVVGAGYIGLECAGFLKGLGYEPTVMVR--SIVLRGFDQQMAELVAASMEERGI 347
                P K  VVGAGYI +E AG L GLG +  +  R  +++ RGFD  + E +   +E  G 
Sbjct: 241552 DLPKKVCVVGAGYIAVELAGILHGLGSDADLAFRGDTVLRRGFDPFVVETIMGELEAHGP 241731

Query: 348    PFLRKTVPLSVEKQDDGKLLVKYKNVETGEEAEDVYDTVLWAIGRKGLVDDLNLPNAGVT 407
                +R+  P +V  ++ GKL ++   +E G      YD V+ A+GR      L L NAGV 
Sbjct: 241732 NLVRRATPAAV-VEERGKLTLE---LEDGRRLAG-YDAVVAAVGRAPATAALRLENAGVA 241896

Query: 408    VQ-KDKIPVDSQEATNVANIYAVGDIIYGKPELTPXXXXXXXXXXXXXXXXSTQ-RMDYK 465
              V  + ++ VD  + ++   +YAVGD      ELTP                  + R+DY 
Sbjct: 241897 VDARGRVIVDDYQNSSARGVYAVGDACDRGYELTPVAIAAGRRLADRLFGGEPRARLDYA 242076

Query: 466    DVATTVFTPLEYACVGLSEEDAVKQFGADEIEVFHGYYKPTEFFIPQKSVRYCYLKAVAE 525
              D++T VF+      VGL+E  A  ++G  ++ V    +    F +     +      +  
Sbjct: 242077 DISTVVFSHPPIGVVGLTEPAARARYG--DVAVKESRFPSMAFALNGAGAKVTTALKLVL 242250

Query: 526    RHGDQRVYGLHYIGPVAGEVIQGFAAALKSGLTINTLINTVGIHPTTAEEF 576
                 ++RV GLH +GP + E++QGFA ALK G T + L   V IHPT AEE 
Sbjct: 242251 AGPEERVVGLHLVGPGSDEMLQGFAVALKMGATRSDLEAAVAIHPTVAEEL 242403


>scaffold_9
          Length = 1602328

 Score =  105 bits (263), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 127/483 (26%), Positives = 195/483 (40%), Gaps = 23/483 (4%)
 Frame = +2

Query: 115    YDLIVIGGGSAGLACAKEAVLNGARVACLDFVKPTPTLGTKWGVGGTCVNVGCIPKKLMH 174
              YDL+ +G G+ GL  AK+A   GAR A ++              GG C+NVGC+P K + 
Sbjct: 797924 YDLVALGAGAGGLVSAKQAARRGARSALIE----------SHLAGGDCLNVGCVPSKALL 798073

Query: 175    QASLLGEAVHEAAAYGWNVD-EKIKPDWHKLVQSVQN-HIKSVNWVTRVDLRDKKVEYIN 232
              + +         A +G  VD   +  D+  +++ ++    +               +   
Sbjct: 798074 RCARAAREARRGAEFG--VDGAAVAVDFGAVMERMRRLRARIAPADAHAATAAVGADVFQ 798247

Query: 233    GLGSFVDSHTLLAKLKSGERTITAQTFVIAVGGRPRYPDIPGAVEYGI-TSDDLFSLDRE 291
              G G FV  +    +++   +T+  +  V+A GG+   P IPG  E    T+  LF+    
Sbjct: 798248 GRGVFVGPN----EIEVNGQTLKFRKAVVATGGQAAVPSIPGLAEAPYHTNATLFNATAL 798415

Query: 292    PGKTLVVGAGYIGLECAGFLKGLGYEPTVMVRSI-VLRGFDQQMAELVAASMEERGIPFL 350
              P + +VVGAG IGLE A  L   G + T ++RS  VL   D   A LV A++E  G+ F+
Sbjct: 798416 PPRVVVVGAGPIGLEMAQALAVFGSKVTCVLRSAKVLPKEDPDAAALVRAALERDGVAFV 798595

Query: 351    RKTVPLSVEKQDDGK--------LLVKYKNVETGEEAEDVYDTVLWAIGRKGLVDDLNLP 402
                     VE     K        + V     ET  E E     +L A GRK  V+   L 
Sbjct: 798596 TGAAYKRVEHAPPKKGAAFPTIGVAVDVDGAETRLECE----MLLVATGRKPNVEHCGLD 798763

Query: 403    NAGVTVQ-KDKIPVDSQEATNVANIYAVGDIIYGKPELTPXXXXXXXXXXXXXXXXSTQR 461
               AGV    +D + VD    T   ++YAVGD+   + + T                     
Sbjct: 798764 KAGVAFDVRDGVQVDDYLRTTNPDVYAVGDVC-TRYQFTHVAGTMAGMVVDNALFRGRHA 798940

Query: 462    MDYKDVATTVFTPLEYACVGLSEEDAVKQ----------FGADEIEVFHGYYKPTEFFIP 511
                   V    +T  E A VGL E D   Q             ++  +  G    TE F+ 
Sbjct: 798941 FSKLVVPWATYTEPEVAHVGLYERDVASQGLACDTYTTALAHNDRAILEG---ATEGFV- 799108

Query: 512    QKSVRYCYLKAVAERHGDQRVYGLHYIGPVAGEVIQGFAAALKSGLTINTLINTVGIHPT 571
                         V  R G   + G   +   AGE+I     A+++ + + T+  T+  +PT
Sbjct: 799109 ----------KVHCRKGTDEILGATIVADHAGELISELTLAIQANVGLGTIGKTIHPYPT 799258

Query: 572    TAE 574
               +E
Sbjct: 799259 VSE 799267



 Score = 96.3 bits (238), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 95/367 (25%), Positives = 157/367 (42%), Gaps = 12/367 (3%)
 Frame = -3

Query: 220     RVDLRDKKVEYINGLGSFVDSHTLLAKLKSG-ERTITAQTFVIAVGGRPRYPDIPGAVEY 278
               R   +  KV+Y+ G G+    +++   L  G    + ++  +IA G  P  P  P  V+ 
Sbjct: 1366250 RFLFKKYKVDYLQGHGTITGPNSVAVALNDGGSEAVESKNILIATGSEPS-PLPPCPVDN 1366074

Query: 279     G----ITSDDLFSLDREPGKTLVVGAGYIGLECAGFLKGLGYEPTVM-VRSIVLRGFDQQ 333
                    + S     LD+ P    VVG G IGLE     + LG + TV+     ++ G D++
Sbjct: 1366073 AGGKIVDSTGALVLDKIPKTMAVVGGGVIGLEMGSVWRRLGTKVTVVEYLGNIVPGVDKE 1365894

Query: 334     MAELVAASMEERGIPFLRKTVPLSVEKQDDGKLLVKYKNVETGEEAEDVYDTVLWAIGRK 393
               + +     ++++G+ F   T  ++ E  D G  L      +  +E  D +D VL A GR+
Sbjct: 1365893 VGKAFLRVLKKQGMKFKLNTGVVASEVVDGGVELTHAPAKDPSKETTDRFDVVLVATGRR 1365714

Query: 394     GLVDDLNLPNAGVTVQK-DKIPVDSQEATNVANIYAVGDIIYGKPELTPXXXXXXXXXXX 452
                  D L L   G+   K  ++ VD    T + +IYA GD++ G P L             
Sbjct: 1365713 PFTDKLGLDALGIETDKLGRVVVDEHFKTKIPSIYAFGDVVDG-PMLAHKAEEEGIACVE 1365537

Query: 453     XXXXXSTQRMDYKDVATTVFTPLEYACVGLSEEDAVKQFGADEIEVFHGYYKPTEFFIPQ 512
                    +   ++Y  +   ++T  E A  G +EE  +K  G D       Y   +  F   
Sbjct: 1365536 SIAGFAGH-VNYDVIPGVIYTHPELATAGKTEEQ-LKDEGVD-------YVVGSFPFSAN 1365384

Query: 513     KSVRYC-----YLKAVAERHGDQRVYGLHYIGPVAGEVIQGFAAALKSGLTINTLINTVG 567
                  R        +K + ++  D R+ G+H IGP AGE+I      ++ G +   +  T  
Sbjct: 1365383 SRARAVGDSEGLVKVLCDKATD-RILGVHIIGPNAGEMIAEGVLGMEYGASSEDIARTCH 1365207

Query: 568     IHPTTAE 574
                HPT +E
Sbjct: 1365206 AHPTLSE 1365186


>scaffold_3
          Length = 3001400

 Score = 72.4 bits (176), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 116/489 (23%), Positives = 200/489 (40%), Gaps = 23/489 (4%)
 Frame = +2

Query: 115     YDLIVIGGGSAGLACAKEAVLNGARVACLDFVKPTPTLGTKWGVGGTCVNVGCIPKKLMH 174
               YDL+VIG G AGL     A   G +   ++          K  +GG C+NVGC P K + 
Sbjct: 2787599 YDLVVIGAGVAGLLSVIVAKSLGKKALLIE----------KHYMGGDCLNVGCFPSKALI 2787748

Query: 175     QASLLGEAVHEAAAYGWNVDEKIKPDW---HKLVQSVQNHIKSVNWVTRVDLRDKKVEYI 231
                 +     +  AA +G  V   +  D+    K +++++  I   + V R   RD   +  
Sbjct: 2787749 ACARKCHELKHAADFGVTVSGDVTVDFGFVMKRMRALRAGIAPHDGVERYG-RDFCDDVC 2787925

Query: 232     NGLGSFVDSHTLLAKLKSGE-RTITAQTFVIAVGGRPRYPDIPGAVEY-GITSDDLFSLD 289
                G+  F     ++     GE +++     +IA G       +PG  +   +T+ + F+L+
Sbjct: 2787926 VGVAKFASPTEVVITSHGGETQSVAFDKCMIATGASAAVVPVPGLRDCPHLTNGNFFNLE 2788105

Query: 290     REPGKTLVVGAGYIGLECAGFLKGLGYEPTVM-VRSIVLRGFDQQMAELVAASMEERGIP 348
                 P +  ++GAG IG+E A  L+  G   T+  V   +L   D   A+LV  ++   G+ 
Sbjct: 2788106 ALPPRACLIGAGPIGIEMAQSLQRFGCAVTIFEVAPQLLPREDPDAAKLVTEALIADGVE 2788285

Query: 349     FLRKTVPLSVEKQDDGKLLVKYK------NVETGEEAEDVY--DTVLWAIGRKGLVDDLN 400
                +   V ++  K   G+L +K        +V   +    V+  + +L A GR   V  + 
Sbjct: 2788286 -VHYAVKITGIKL-AGELAMKAPWPTYDVSVTLSDGTAKVFQCEALLNATGRAPNVSGIG 2788459

Query: 401     LPNAGVTVQ-KDKIPVDSQEATNVANIYAVGDIIYGKP-ELTPXXXXXXXXXXXXXXXXS 458
               L  AGV    +  + +     T+  NIY+ GD     P + T                 +
Sbjct: 2788460 LDEAGVDYDTRTGVHISDLYETSAPNIYSCGDC--ASPYKFTHAADWQARCAVRNMFLQA 2788633

Query: 459     TQRMDYKDVATTVFTPLEYACVGLSEEDAVKQFGADEIEVFHGYYKPTEFFIPQKSVRYC 518
                 +     V    +T  E A VGL E++       D+   +  Y +  +F    K V  C
Sbjct: 2788634 NSKHSDLLVPWATYTDPEIAHVGLYEKEM-----DDKGIAYDTYVR--QF----KDVDRC 2788780

Query: 519     YLKAVAE-------RHGDQRVYGLHYIGPVAGEVIQGFAAALKSGLTINTLINTVGIHPT 571
                 + V           G  ++ G   +GP AG++I      +++G+    +   +  +PT
Sbjct: 2788781 KCEGVTSGFVKISCAKGSDQILGSTIVGPCAGDLISEITVCMQNGIGCKDIAGVMHPYPT 2788960

Query: 572     TAEEFTRLA 580
               TAE   + A
Sbjct: 2788961 TAEAVRQCA 2788987



 Score = 34.3 bits (77), Expect = 0.56,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 26/47 (55%)
 Frame = +3

Query: 283   DDLFSLDREPGKTLVVGAGYIGLECAGFLKGLGYEPTVMVRSIVLRG 329
             ++L++   +  K  ++G G  GL CA +L   G+EPTV     VL G
Sbjct: 75387 NELYAPAPQKKKVAIIGGGLSGLSCAKYLSDAGHEPTVYEARDVLGG 75527


>scaffold_7
          Length = 2177197

 Score = 51.2 bits (121), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 87/343 (25%), Positives = 133/343 (38%), Gaps = 22/343 (6%)
 Frame = +2

Query: 115     YDLIVIGGGSAGLACAKEAVLNGARVACLDFVKPTPTLGTKWGVGGTCVNVGCIPKK--- 171
               YDL+V+G G+AGLA A +A   GAR A ++      +L      GG  +   C+P K   
Sbjct: 1395680 YDLVVVGAGAAGLAAATQAARRGARTALVE-----ASL-----FGGASLTSACVPAKALA 1395829

Query: 172     ------------LMHQASLLGEAVHEAAAYGWNVDEKIKPDWHKLVQSVQNHIKSVNWVT 219
                           L H+   +   VH+AA +G       +            H++      
Sbjct: 1395830 RAARCVRAARSSLAHELG-VNAPVHKAADFGAVARRMRRLRARLAAADAPKHLEK----- 1395991

Query: 220     RVDLRDKKVEYINGLGSFVDSHTLLAKLKSGERTITAQTFVIAVGGRPRYPDIPGAVEYG 279
                   R   +   +G   FV    +        R +     ++A G  P  PD+PG  E  
Sbjct: 1395992 ----RHPNLSVFSGTAEFVSEDCVEVAADGDRRRLAFAHCIVATGASPALPDVPGLREAP 1396159

Query: 280     I-TSDDLFSLDREPGKTLVVGAGYIGLECAGFLKGLGYEPTVMVRSIVLRGFDQQMAELV 338
                 T    +  +  P + +V+G G    E A  L  LG    +  R   L   D   A +V
Sbjct: 1396160 YRTHLSWYDCEELPRRAVVLGGGPQAAETAQALSVLGCRVCLAARGEFLPREDAAAASVV 1396339

Query: 339     AASMEERGIPFLRKT--VPLSVEKQDD---GKLLVKYKNVETGEEAEDVYDTVLWAIGRK 393
                  +E  G+  L     V +SV++ +    G  + +  +    E+     D +L A GRK
Sbjct: 1396340 RRELEADGVEILTNVSFVAVSVDEAEALPVGVAIRETNDFYASEKRVLRCDALLVAAGRK 1396519

Query: 394     GLVDDLNLPNAGVTVQ-KDKIPVDSQEATNVANIYAVGDIIYG 435
                 V  L L  AGV    ++ I VD    T+   I+A GD+  G
Sbjct: 1396520 PRVAGLGLDAAGVAYDAQNGIRVDGMLRTSNPRIFAAGDVASG 1396648



 Score = 33.5 bits (75), Expect = 0.85,   Method: Composition-based stats.
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = -1

Query: 114     DYDLIVIGGGSAGLACAKEAVLNGARVACLD 144
               D D++VIGGG AG ACA     NG R   ++
Sbjct: 1993141 DVDVVVIGGGIAGTACALRLAANGRRTVLVE 1993049



 Score = 32.3 bits (72), Expect = 1.7,   Method: Composition-based stats.
 Identities = 58/213 (27%), Positives = 88/213 (41%), Gaps = 24/213 (11%)
 Frame = -1

Query: 247    LKSGERTITAQTFVIAVGGRPRYPDIPGAVEYGI----TSDDLFSL---DREPGKTL--V 297
              ++ G+  +     V+A G  P  P + G    G+    T DDL  L       G T   V
Sbjct: 391009 VRCGDEAVPYDACVLATGSYPFVPPVEGKDLDGVFVYRTVDDLERLVAYQEAHGVTAAAV 390830

Query: 298    VGAGYIGLECAGFLKGLG-------YEPTVMVRSIVLRGFDQQMAELVAASMEERGIPFL 350
              VG G +GLE A  +  LG       Y P +M R I     D      +A+ +E+ G+   
Sbjct: 390829 VGGGLLGLEAAKAMHDLGMKTHILEYAPILMCRQI-----DAGGHAALASMVEDLGLEIH 390665

Query: 351    RKTVPLSVEKQDDGKLL-VKYKNVETGEEAEDVYDTVLWAIGRKGLVDDLNLPNAGVTV- 408
                    + E   DG++  V + N   G +  DV   V+ A    G+     L    V V 
Sbjct: 390664 CDARTKAFEAGADGRVAGVSFTN--EGWDDLDVGIVVVSA----GIRPRDELARDVVDVH 390503

Query: 409    QKDKIPVDSQEATNVANIYAVGDI------IYG 435
              ++  + VD +  T+   I+AVG++      IYG
Sbjct: 390502 ERGGVVVDDELRTSDPAIFAVGEVALHRGSIYG 390404


>scaffold_10
          Length = 1654512

 Score = 41.2 bits (95), Expect = 0.004,   Method: Composition-based stats.
 Identities = 81/338 (23%), Positives = 131/338 (38%), Gaps = 28/338 (8%)
 Frame = +1

Query: 249    SGERTITAQTFVIAVGGRP-RYP--DIPGAVEYG----ITSDDLFSLDREPGKTLVVGAG 301
              S   T+  +  V+A G R  R+   D  GA   G      SD +  L   P + ++VG G
Sbjct: 698002 SAGTTVRGKHCVVATGSRAVRFDGLDYDGADAAGRRRVYDSDSVKGLSFLPRRVVIVGGG 698181

Query: 302    YIGLECAGFLKGLGYEPTVMVRSIVLR------GFDQQMAELVAASMEERGIPFLRKTVP 355
               I +E A     L  + T++VRS  L       G D  +A  + A + + G+  L +T  
Sbjct: 698182 IIAVEYARIFAALAADVTLVVRSADLPKSLRRVGIDAGLAGALQADLRDAGVDILFET-E 698358

Query: 356    LSVEKQDDGKLLVKYKNVETGEEAEDVYDTVLWAIGR----KGLVDDLNLPNAGVTVQKD 411
              ++        + V  ++  T E      D +L A GR    +G+ DD  L + G+     
Sbjct: 698359 IAGAALAGAAVAVALRDGRTLEA-----DVLLTATGRAAVTRGVFDDAALVD-GLLAPNG 698520

Query: 412    KIPVDSQEATNVANIYAVGDIIYGKPELTPXXXXXXXXXXXXXXXXSTQRMDYKD---VA 468
               + VD +  T    +   GD++ G P+L                       D      +A
Sbjct: 698521 DLLVDGELKTVHRAVSGAGDVV-GAPQLASTGIAQAEAAVDCVYGDGCALGDVSPAGLLA 698697

Query: 469    TTVFTPL------EYACVGLSEEDAVKQFGADEIEVFHGYYKPTEFFIPQK--SVRYCYL 520
              +T   P+      E A  GL+ E A  + G D +     Y       + +   S R C L
Sbjct: 698698 STARYPVGIWTVPELAFCGLTAEAAADR-GLDVVVGVAHYADTVRGHVRESDASTRSC-L 698871

Query: 521    KAVAERHGDQRVYGLHYIGPVAGEVIQGFAAALKSGLT 558
              K V  R     + G+H  G  A E++      +++ +T
Sbjct: 698872 KLVVARDAPHTILGVHLFGDDAAELVHFGTTLVQASMT 698985


>scaffold_12
          Length = 1412611

 Score = 34.3 bits (77), Expect = 0.46,   Method: Composition-based stats.
 Identities = 76/326 (23%), Positives = 114/326 (34%), Gaps = 9/326 (2%)
 Frame = +1

Query: 116    DLIVIGGGSAGLACAKEAVLNGARVACLDFVKPTPTLGTKWGVGGTCVNVGCIPKKLMHQ 175
              D++++GGG AG  CA        +   +D     P +G    +     N   + K  M  
Sbjct: 981574 DVVIVGGGPAGCTCALYTSRADLKTVIVD---KNPAVGA-LAITSHIANYPGVDKS-MTG 981738

Query: 176    ASLLGEAVHEAAAYGWNVDEKIKPDWHKLVQSVQNHIKSVNWVTRVDLRDKKVEYINGLG 235
                LL +   +A +YG                               D R  +V  ++  G
Sbjct: 981739 TELLDQMRDQAVSYG------------------------------TDYRRAQVFMVDTDG 981828

Query: 236    SFVDSHTLLAKLKSGERTITAQTFVIAVGGRPRYPDIPG-------AVEYGITSDDLFSL 288
               F   +T        + TI A+  V+A G   R P   G        V Y  T D  F  
Sbjct: 981829 EFKMVYT-------PDATIKARALVLATGAMGRPPSFAGEGEYLGKGVSYCATCDGAFYR 981987

Query: 289    DREPGKTLVVGAGYIGLECAGFLKGLGYEPTV-MVRSIVLRGFDQQMAELVAASMEERGI 347
              + E     VVG     +E A FL    +  TV  + S   +  D +  EL+        +
Sbjct: 981988 ESE---VAVVGTHTDAIEEATFLTK--FASTVHWITSNEPKADDAEAWELIGLD----NV 982140

Query: 348    PFLRKTVPLSVEKQDDGKLLVKYKNVETGEEAEDVYDTVLWAIGRKGLVDDLNLPNAGVT 407
                  +T   +VE    G   V  K     E    V    ++  G K + D L      V 
Sbjct: 982141 KHWPRTAMKAVEGDASGVTGVTIKPRGEDELLLPVEGCFIYMSGSKPITDFLQ--TGQVE 982314

Query: 408    VQKDK-IPVDSQEATNVANIYAVGDI 432
               + D  + VD   AT++  +YA+GDI
Sbjct: 982315 FRDDGGVAVDDNMATSMPGVYAIGDI 982392


>scaffold_4
          Length = 3024044

 Score = 33.1 bits (74), Expect = 1.0,   Method: Composition-based stats.
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = -2

Query: 116    DLIVIGGGSAGLACAKEAVLNGARVACLDFVKPTPTLGTKWGVGG 160
              D ++IGGGS G +CA      G R   L+  +   T GT W   G
Sbjct: 407740 DAVIIGGGSVGASCAYHLAAQGFRTVLLE--QNALTAGTTWHTAG 407612


>scaffold_5
          Length = 3000003

 Score = 32.0 bits (71), Expect = 2.7,   Method: Composition-based stats.
 Identities = 11/16 (68%), Positives = 15/16 (93%)
 Frame = -3

Query: 114     DYDLIVIGGGSAGLAC 129
               DYD++++GGG AGLAC
Sbjct: 2451928 DYDVLILGGGCAGLAC 2451881


>scaffold_2
          Length = 3465789

 Score = 31.2 bits (69), Expect = 4.5,   Method: Composition-based stats.
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +2

Query: 115    YDLIVIGGGSAGLACAKEAVLNGARVACLD 144
              YD++VIG G  GL+CA      G RV  L+
Sbjct: 913775 YDVVVIGSGIGGLSCAGLLAAAGKRVCVLE 913864


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000091_1.0 # Protein # Thioredoxin reductase 2 (TR2) #
Drosophila melanogaster # Complete
         (516 letters)

Database: genome.fa 
           1185 sequences; 56,660,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

scaffold_11                                                           380   e-105
scaffold_8                                                            217   4e-56
scaffold_41                                                           208   1e-53
scaffold_9                                                             93   1e-18
scaffold_3                                                             77   8e-14
scaffold_7                                                             59   1e-08
scaffold_10                                                            46   1e-04
scaffold_6                                                             34   0.37 
scaffold_5                                                             32   2.0  
scaffold_12                                                            30   9.7  

>scaffold_11
          Length = 1405779

 Score =  380 bits (976), Expect = e-105,   Method: Composition-based stats.
 Identities = 209/485 (43%), Positives = 282/485 (58%), Gaps = 9/485 (1%)
 Frame = -3

Query: 31     YDYDXXXXXXXXXXXXCAKEAAGCGARVLCFDYVKPTPVGTKWGIGGTCVNVGCIPKKLM 90
              +DYD            C+KE A  GA+V   D+VKP+P G+ WG+GGTCVNVGCIPKKLM
Sbjct: 787990 FDYDVVVVGGGSGGLACSKECAKLGAKVAVLDFVKPSPAGSTWGLGGTCVNVGCIPKKLM 787811

Query: 91     HQASLLGEAVHE-AVAYGWNVDDTNIRPDWRKLVRSVQNHIKSVNWVTRVDLRDKKVEYV 149
              H AS++GE + + A A+GW  D      DW  +  +VQ+HIKS+N+  RV LR+  + Y+
Sbjct: 787810 HTASIIGETLKDDAAAFGWK-DAAAGAHDWESMKSTVQDHIKSLNFKYRVALREAGITYL 787634

Query: 150    NSMATFRDSHTIEYVAMPGAEHRQVTSEYVVVAVGGRPRYPDIPGAVELGITSDDIFSYE 209
              N +  F D +TI      G +   VT+   +VAVGGRP     PG  E  I SDD+FS  
Sbjct: 787633 NRLGEFEDKNTISLTDKKGNK-TSVTAARFIVAVGGRPNKLGCPGG-EHAIDSDDLFSLP 787460

Query: 210    REPGRTLVVGAGYVGLECACFLKGLGYEPTVMVRSIVLRGFDRQMSELLAAMMTERGIPF 269
              + PGR L VG GY+ LEC  F  G+GY  T MVRSI+LRGFDR+    + A +   G+  
Sbjct: 787459 KAPGRVLCVGGGYIALECGGFTAGMGYPTTCMVRSILLRGFDRECVGKIEAHIKHHGVQL 787280

Query: 270    LGTTIPKAVERQADGRLLVRYRNTTTQMDGSDVFDTVLWAIGRKGLIEDLNLD-----AA 324
                   P  +E+ A   +L      T    G   +DTVL A GR      L +D     +A
Sbjct: 787279 QVGVTPAKIEKDAATGVLT----VTDSGGGVHEYDTVLVATGRYADTAALGIDNVPGASA 787112

Query: 325    GVKTHDDKIVVDAAEATSVPHIFAVGDIIYGRPELTPVAILSGRLLARRLFAGSTQLMDY 384
               V     K+     +    PH++A+GD++ GRPELTPVAI +G  LARRLF G T+ MDY
Sbjct: 787111 NVNAKTKKLECVDEQLPGAPHVYAIGDVVEGRPELTPVAIEAGLRLARRLFGGKTEPMDY 786932

Query: 385    ADVATTVFTPLEYSCVGMSEETAIELRGADNIEVFHGYYKPTEFFIPQKSVRH---CYLK 441
                VATT+FTPLEY  +G+SE+ A    G  N+E +   + P E+ + +        C+ K
Sbjct: 786931 ECVATTIFTPLEYGTIGLSEDDAKAQLGECNVESYISEFAPLEYALSETRSERGDGCFAK 786752

Query: 442    AVAEVSGDQKILGLHYIGPVAGEVIQGFAAALKTGLTVKTLLNTVGIHPTTAEEFTRLSI 501
               V + S   K++G HY+GP AGE+ QGF+ A++ G T    ++TVGIHPT AEEFT +++
Sbjct: 786751 LVVDKS-TGKVVGFHYLGPNAGEITQGFSIAMRKGATYADFISTVGIHPTVAEEFTSMTV 786575

Query: 502    TKRSG 506
              TK SG
Sbjct: 786574 TKSSG 786560


>scaffold_8
          Length = 1961717

 Score =  217 bits (552), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 163/450 (36%), Positives = 237/450 (52%), Gaps = 14/450 (3%)
 Frame = -2

Query: 65      KPTPVGTKWGIGGTCVNVGCIPKKLMHQASLLGEAVHEAVAYGWNVDDTNIRPDWRKLVR 124
               K   V  +  +GGTCVNVGC+PKK+M  A+ + E +H+A  Y ++  + +++ DW KL  
Sbjct: 1269214 KKVAVVERGALGGTCVNVGCVPKKVMFNAAHIMECLHDAPLYQYSGAE-DVKLDWGKLKT 1269038

Query: 125     SVQNHIKSVNWVTRVDLRDKKVEYVNSMATFRDSHTIEYVAMPGAEHRQVTSEYVVVAVG 184
               +  N++  +N +    L    +  +  +A+F D   +    M G E    T+++V+VAVG
Sbjct: 1269037 ARDNYVVRLNGIYGRGLDGADITTLTGLASFGDDGEV----MVGGE--AYTADHVLVAVG 1268876

Query: 185     GRPRYPDIPGAVELGITSDDIFSYEREPGRTLVVGAGYVGLECACFLKGLGYEPTVMVR- 243
               G P  P      E  ITSD  F  E  P   LVVGAGY+ +E A  L  LG + T+ VR 
Sbjct: 1268875 GVPSLPLELEGGEHTITSDGFFELEAMPESCLVVGAGYIAVEMAGILNALGCDTTLAVRG 1268696

Query: 244     SIVLRGFDRQMSELLAAMMTERGIPF-LGTTIPKAVERQADGRLLVRYRNTTTQMDGSDV 302
                  LR FD  +S  L A M   G+    GTT+ K VE       LV  +   T  DG+ +
Sbjct: 1268695 DKALRAFDELLSTTLDAEMKRAGMKIATGTTLAK-VE-------LVDGKKVVTTTDGATL 1268540

Query: 303     --FDTVLWAIGRKGLIEDLNLDAAGVKTHDDKIV-VDAAEATSVPH-IFAVGDIIYGRPE 358
                 FD VL A+GRK L+E L L+ AGV  +D+  V VD  + T+  H ++A+GD+  G  E
Sbjct: 1268539 GPFDEVLMAVGRKPLVEPLKLENAGVDLNDEGYVAVDEYQRTTSEHNVYALGDVC-GAIE 1268363

Query: 359     LTPVAILSGRLLARRLFAG---STQLMDYADVATTVFTPLEYSCVGMSEETAIELRGADN 415
               LTP+AI +GR L+ RLF G   +    DY  V T VF+      +G++E  A+E  G  N
Sbjct: 1268362 LTPMAIAAGRRLSDRLFGGPECANAKADYEGVPTVVFSHPTIGTIGLTEAEALEKYGEAN 1268183

Query: 416     IEVFHG-----YYKPTEFFIPQKSVRHCYLKAVAEVSGDQKILGLHYIGPVAGEVIQGFA 470
               ++V+       +Y P    I         +K V     ++ ++GLH IG  A E++QGF 
Sbjct: 1268182 VKVWTSTFVNLWYGPMP--IDPSDKPKTAMKLVT-AGANELVVGLHVIGLGADEMLQGFG 1268012

Query: 471     AALKTGLTVKTLLNTVGIHPTTAEEFTRLS 500
                A+K G T     + + +HPT AEEF  L+
Sbjct: 1268011 VAMKMGATKADFDSCIALHPTAAEEFVTLA 1267922



 Score = 77.0 bits (188), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 98/378 (25%), Positives = 159/378 (42%), Gaps = 29/378 (7%)
 Frame = -1

Query: 146     VEYVNSMATFRDSHTIEYVAMPGAEHRQVTSEYVVVAVGGRPRYPDIPGAV---ELGITS 202
               VE +     +   +T+E         ++VT++ +++A G  P  P  PG     E   TS
Sbjct: 1713404 VELIPEFGAYGGPNTVEL-----GNGKKVTAQDIILAPGSVPFVP--PGVTIDGETVYTS 1713246

Query: 203     DDIFSYEREPGRTLVVGAGYVGLECACFLKGLGYEPTVM-VRSIVLRGFDRQMSELLAAM 261
               D+    E  P    ++G+G +GLE +     LG E T++     ++  FDR++++    +
Sbjct: 1713245 DEGLRLEHVPEYCAIIGSGIIGLEFSDVYTALGSECTLIEALPKLMPAFDREIAKQAERL 1713066

Query: 262     M-TERGIPFLGTTIPKAVERQADGR---LLVRYRNTTTQMDGSDVFDTVLWAIGRKGLIE 317
               + T RGI +        V     G    ++      T ++      DT + A GR     
Sbjct: 1713065 LLTPRGIDYRTGVFASKVTPGKLGEKPVVIEMIDAETKELVEVLEVDTCMVATGRVPNTG 1712886

Query: 318     DLNLDAAGVKTHDDKIVVD--------AAEATSVPHIFAVGDIIYGRPELTPVAILSGRL 369
                L LD  G++T    + VD           A +  H++ +GD   G   L   A   G +
Sbjct: 1712885 KLGLDKHGIETPRGFVQVDETMRVLAGPGGAVADEHLYCIGDA-NGIQMLAHTASTQG-V 1712712

Query: 370     LARRLFAGSTQLMDYADVATTVFTPLEYSCVGMSEETAIELRGADNIEVFHGYYKPTEFF 429
                A     G   ++++ D+    FT  E + VG+ E+ A +   A+  E+           
Sbjct: 1712711 SAIENICGRKHVVNHEDIPAACFTHPEVAQVGIDEDAAKDRAEAEGFEL----------- 1712565

Query: 430     IPQKSVRH--CYLKAVAEVSGD-----------QKILGLHYIGPVAGEVIQGFAAALKTG 476
                  K+V H     KA+AE  GD           ++ILG+H IG  A ++IQ  A A   G
Sbjct: 1712564 --GKAVGHFRANSKALAEGEGDGIAKVLFNKDTEQILGVHIIGLHAADLIQECANAKAAG 1712391

Query: 477     LTVKTLLNTVGIHPTTAE 494
                TV+ L  T   HPT +E
Sbjct: 1712390 TTVRELAFTTHTHPTLSE 1712337



 Score = 31.6 bits (70), Expect = 2.4,   Method: Composition-based stats.
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = -3

Query: 75      IGGTCVNVGCIPKKLMHQAS 94
               +GGTCVN GC+P K +  AS
Sbjct: 1713702 VGGTCVNRGCVPSKALLAAS 1713643



 Score = 31.6 bits (70), Expect = 2.8,   Method: Composition-based stats.
 Identities = 32/102 (31%), Positives = 39/102 (38%)
 Frame = -2

Query: 212    PGRTLVVGAGYVGLECACFLKGLGYEPTVMVRSIVLRGFDRQMSELLAAMMTERGIPFLG 271
              P R  VVGAG  GL CA  L   G+  T+   S      DR   +   A        F  
Sbjct: 416287 PQRVAVVGAGPAGLSCASALGERGHAVTLFEAS------DRVGGQFNLAARVPGKQEFWE 416126

Query: 272    TTIPKAVERQADGRLLVRYRNTTTQMDGSDVFDTVLWAIGRK 313
              T   +  E Q +   +    NTT   D    FD V+ A G K
Sbjct: 416125 TL--RYFESQLEKHAVDVRLNTTADADALKTFDKVVVATGVK 416006


>scaffold_41
          Length = 407180

 Score =  208 bits (530), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 160/461 (34%), Positives = 229/461 (49%), Gaps = 12/461 (2%)
 Frame = +1

Query: 48     AKEAAGCGARVLCFDYVKPTPVG----TKWGIGGTCVNVGCIPKKLMHQASLLGEAV--H 101
              A+ AAG GARVL  D   PT       T  G GGTCVNVGC+PKK+M+ A+   E+    
Sbjct: 241072 ARRAAGYGARVLLVDK-GPTRDASGKRTGAGFGGTCVNVGCVPKKIMYNAAHCRESALGP 241248

Query: 102    EAVAYGWNVDDTNIRPDWRKLVRSVQNHIKSVNWVTRVDLRDKKVEYVNSMATFRDSHTI 161
               A A G  V  +    DW  L R    ++  +N     + +   VE +   A+F D+ TI
Sbjct: 241249 TATAAGLGVSLSGGAVDWAALKRRRDAYVAGLNAAYERNWKKAGVEVLVGAASFVDARTI 241428

Query: 162    EYVAMPGAEHRQVTSEYVVVAVGGRPRYPDIPGAVELGITSDDIFSYEREPGRTLVVGAG 221
                      +  +  ++ VVVAVGG P   DIPG   L + SDD F  E  P +  VVGAG
Sbjct: 241429 ------AVDGNRYAADEVVVAVGGAPASLDIPGGA-LAVDSDDFFDLEDLPKKVCVVGAG 241587

Query: 222    YVGLECACFLKGLGYEPTVMVR--SIVLRGFDRQMSELLAAMMTERGIPFLGTTIPKAVE 279
              Y+ +E A  L GLG +  +  R  +++ RGFD  + E +   +   G   +    P AV 
Sbjct: 241588 YIAVELAGILHGLGSDADLAFRGDTVLRRGFDPFVVETIMGELEAHGPNLVRRATPAAVV 241767

Query: 280    RQADGRLLVRYRNTTTQMDGSDV--FDTVLWAIGRKGLIEDLNLDAAGVKTH-DDKIVVD 336
               +       R + T    DG  +  +D V+ A+GR      L L+ AGV      +++VD
Sbjct: 241768 EE-------RGKLTLELEDGRRLAGYDAVVAAVGRAPATAALRLENAGVAVDARGRVIVD 241926

Query: 337    AAEATSVPHIFAVGDIIYGRPELTPVAILSGRLLARRLFAGSTQL-MDYADVATTVFTPL 395
                + +S   ++AVGD      ELTPVAI +GR LA RLF G  +  +DYAD++T VF+  
Sbjct: 241927 DYQNSSARGVYAVGDACDRGYELTPVAIAAGRRLADRLFGGEPRARLDYADISTVVFSHP 242106

Query: 396    EYSCVGMSEETAIELRGADNIEVFHGYYKPTEFFIPQKSVRHCYLKAVAEVSGDQKILGL 455
                  VG++E  A    G  ++ V    +    F +     +      +     +++++GL
Sbjct: 242107 PIGVVGLTEPAARARYG--DVAVKESRFPSMAFALNGAGAKVTTALKLVLAGPEERVVGL 242280

Query: 456    HYIGPVAGEVIQGFAAALKTGLTVKTLLNTVGIHPTTAEEF 496
              H +GP + E++QGFA ALK G T   L   V IHPT AEE 
Sbjct: 242281 HLVGPGSDEMLQGFAVALKMGATRSDLEAAVAIHPTVAEEL 242403


>scaffold_9
          Length = 1602328

 Score = 92.8 bits (229), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 97/368 (26%), Positives = 163/368 (44%), Gaps = 11/368 (2%)
 Frame = -3

Query: 138     RVDLRDKKVEYVNSMATFRDSHTIEYVAMPGAEHRQVTSEYVVVAVGGRPRYPDIPGAVE 197
               R   +  KV+Y+    T    +++  VA+       V S+ +++A G  P  P  P  V+
Sbjct: 1366250 RFLFKKYKVDYLQGHGTITGPNSVA-VALNDGGSEAVESKNILIATGSEPS-PLPPCPVD 1366077

Query: 198     LG----ITSDDIFSYEREPGRTLVVGAGYVGLECACFLKGLGYEPTVM-VRSIVLRGFDR 252
                     + S      ++ P    VVG G +GLE     + LG + TV+     ++ G D+
Sbjct: 1366076 NAGGKIVDSTGALVLDKIPKTMAVVGGGVIGLEMGSVWRRLGTKVTVVEYLGNIVPGVDK 1365897

Query: 253     QMSELLAAMMTERGIPFLGTTIPKAVERQADGRLLVRYRNTTTQMDGSDVFDTVLWAIGR 312
               ++ +    ++ ++G+ F   T   A E    G  L          + +D FD VL A GR
Sbjct: 1365896 EVGKAFLRVLKKQGMKFKLNTGVVASEVVDGGVELTHAPAKDPSKETTDRFDVVLVATGR 1365717

Query: 313     KGLIEDLNLDAAGVKTHD-DKIVVDAAEATSVPHIFAVGDIIYGRPELTPVAILSGRLLA 371
               +   + L LDA G++T    ++VVD    T +P I+A GD++ G P L   A   G    
Sbjct: 1365716 RPFTDKLGLDALGIETDKLGRVVVDEHFKTKIPSIYAFGDVVDG-PMLAHKAEEEGIACV 1365540

Query: 372     RRLFAGSTQLMDYADVATTVFTPLEYSCVGMSEETAIELRGADNIEVFHGYYKPTEFFIP 431
                 + AG    ++Y  +   ++T  E +  G +EE  ++  G D       Y   +  F  
Sbjct: 1365539 ESI-AGFAGHVNYDVIPGVIYTHPELATAGKTEEQ-LKDEGVD-------YVVGSFPFSA 1365387

Query: 432     QKSVRHC-----YLKAVAEVSGDQKILGLHYIGPVAGEVIQGFAAALKTGLTVKTLLNTV 486
                   R        +K + + + D +ILG+H IGP AGE+I      ++ G + + +  T 
Sbjct: 1365386 NSRARAVGDSEGLVKVLCDKATD-RILGVHIIGPNAGEMIAEGVLGMEYGASSEDIARTC 1365210

Query: 487     GIHPTTAE 494
                 HPT +E
Sbjct: 1365209 HAHPTLSE 1365186



 Score = 82.4 bits (202), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 121/485 (24%), Positives = 191/485 (39%), Gaps = 19/485 (3%)
 Frame = +2

Query: 29     PRYDYDXXXXXXXXXXXXCAKEAAGCGARVLCFDYVKPTPVGTKWGIGGTCVNVGCIPKK 88
              P + YD             AK+AA  GAR    +             GG C+NVGC+P K
Sbjct: 797912 PGFVYDLVALGAGAGGLVSAKQAARRGARSALIE---------SHLAGGDCLNVGCVPSK 798064

Query: 89     LMHQASLLGEAVHEAVAYGWNVDDTNIRPDWRKLVRSVQN-HIKSVNWVTRVDLRDKKVE 147
               + + +           +G  VD   +  D+  ++  ++    +               +
Sbjct: 798065 ALLRCARAAREARRGAEFG--VDGAAVAVDFGAVMERMRRLRARIAPADAHAATAAVGAD 798238

Query: 148    YVNSMATFRDSHTIEYVAMPGAEHRQVTSEYVVVAVGGRPRYPDIPGAVELGI-TSDDIF 206
                     F   + IE         + +     VVA GG+   P IPG  E    T+  +F
Sbjct: 798239 VFQGRGVFVGPNEIE------VNGQTLKFRKAVVATGGQAAVPSIPGLAEAPYHTNATLF 798400

Query: 207    SYEREPGRTLVVGAGYVGLECACFLKGLGYEPTVMVRSI-VLRGFDRQMSELLAAMMTER 265
              +    P R +VVGAG +GLE A  L   G + T ++RS  VL   D   + L+ A +   
Sbjct: 798401 NATALPPRVVVVGAGPIGLEMAQALAVFGSKVTCVLRSAKVLPKEDPDAAALVRAALERD 798580

Query: 266    GIPFLGTTIPKAVERQADGR-LLVRYRNTTTQMDGSDV---FDTVLWAIGRKGLIEDLNL 321
              G+ F+     K VE     +            +DG++     + +L A GRK  +E   L
Sbjct: 798581 GVAFVTGAAYKRVEHAPPKKGAAFPTIGVAVDVDGAETRLECEMLLVATGRKPNVEHCGL 798760

Query: 322    DAAGVKTH-DDKIVVDAAEATSVPHIFAVGDIIYGRPELTPVA-ILSGRLLARRLFAGST 379
              D AGV     D + VD    T+ P ++AVGD+   R + T VA  ++G ++   LF G  
Sbjct: 798761 DKAGVAFDVRDGVQVDDYLRTTNPDVYAVGDVC-TRYQFTHVAGTMAGMVVDNALFRGRH 798937

Query: 380    QLMDYADVATTVFTPLEYSCVGMSE----------ETAIELRGADNIEVFHGYYKPTEFF 429
                     V    +T  E + VG+ E          +T       ++  +  G    TE F
Sbjct: 798938 AFSKLV-VPWATYTEPEVAHVGLYERDVASQGLACDTYTTALAHNDRAILEG---ATEGF 799105

Query: 430    IPQKSVRHCYLKAVAEVSGDQKILGLHYIGPVAGEVIQGFAAALKTGLTVKTLLNTVGIH 489
              +      HC         G  +ILG   +   AGE+I     A++  + + T+  T+  +
Sbjct: 799106 VKV----HCR-------KGTDEILGATIVADHAGELISELTLAIQANVGLGTIGKTIHPY 799252

Query: 490    PTTAE 494
              PT +E
Sbjct: 799253 PTVSE 799267


>scaffold_3
          Length = 3001400

 Score = 76.6 bits (187), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 111/443 (25%), Positives = 188/443 (42%), Gaps = 23/443 (5%)
 Frame = +2

Query: 75      IGGTCVNVGCIPKKLMHQASLLGEAVHEAVAYGWNVDDTNIRPDW---RKLVRSVQNHIK 131
               +GG C+NVGC P K +   +     +  A  +G  V   ++  D+    K +R+++  I 
Sbjct: 2787698 MGGDCLNVGCFPSKALIACARKCHELKHAADFGVTVSG-DVTVDFGFVMKRMRALRAGIA 2787874

Query: 132     SVNWVTRVDLRDKKVEYVNSMATFRDSHTIEYVAMPGAEHRQVTSEYVVVAVGGRPRYPD 191
                 + V R   RD   +    +A F  S T   +   G E + V  +  ++A G       
Sbjct: 2787875 PHDGVERYG-RDFCDDVCVGVAKFA-SPTEVVITSHGGETQSVAFDKCMIATGASAAVVP 2788048

Query: 192     IPGAVEL-GITSDDIFSYEREPGRTLVVGAGYVGLECACFLKGLGYEPTVM-VRSIVLRG 249
               +PG  +   +T+ + F+ E  P R  ++GAG +G+E A  L+  G   T+  V   +L  
Sbjct: 2788049 VPGLRDCPHLTNGNFFNLEALPPRACLIGAGPIGIEMAQSLQRFGCAVTIFEVAPQLLPR 2788228

Query: 250     FDRQMSELLAAMMTERGIPFLGTTIPKAVERQADGRLLVR-----YRNTTTQMDGS-DVF 303
                D   ++L+   +   G+        K    +  G L ++     Y  + T  DG+  VF
Sbjct: 2788229 EDPDAAKLVTEALIADGVEVHYAV--KITGIKLAGELAMKAPWPTYDVSVTLSDGTAKVF 2788402

Query: 304     --DTVLWAIGRKGLIEDLNLDAAGVKTHDDKIVVDAAE--ATSVPHIFAVGDIIYGRP-E 358
                 + +L A GR   +  + LD AGV  +D +  V  ++   TS P+I++ GD     P +
Sbjct: 2788403 QCEALLNATGRAPNVSGIGLDEAGVD-YDTRTGVHISDLYETSAPNIYSCGDC--ASPYK 2788573

Query: 359     LTPVAILSGRLLARRLFAGSTQLMDYADVATTVFTPLEYSCVGMSEETAIELRGADNIEV 418
                T  A    R   R +F  +        V    +T  E + VG+ E      +  D+  +
Sbjct: 2788574 FTHAADWQARCAVRNMFLQANSKHSDLLVPWATYTDPEIAHVGLYE------KEMDDKGI 2788735

Query: 419     FHGYYKPTEFFIPQKSVRHCYLKAVAE-------VSGDQKILGLHYIGPVAGEVIQGFAA 471
                +  Y   +F    K V  C  + V           G  +ILG   +GP AG++I     
Sbjct: 2788736 AYDTYV-RQF----KDVDRCKCEGVTSGFVKISCAKGSDQILGSTIVGPCAGDLISEITV 2788900

Query: 472     ALKTGLTVKTLLNTVGIHPTTAE 494
                ++ G+  K +   +  +PTTAE
Sbjct: 2788901 CMQNGIGCKDIAGVMHPYPTTAE 2788969



 Score = 31.6 bits (70), Expect = 2.7,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 26/47 (55%)
 Frame = +3

Query: 203   DDIFSYEREPGRTLVVGAGYVGLECACFLKGLGYEPTVMVRSIVLRG 249
             +++++   +  +  ++G G  GL CA +L   G+EPTV     VL G
Sbjct: 75387 NELYAPAPQKKKVAIIGGGLSGLSCAKYLSDAGHEPTVYEARDVLGG 75527


>scaffold_7
          Length = 2177197

 Score = 58.9 bits (141), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 91/362 (25%), Positives = 134/362 (37%), Gaps = 9/362 (2%)
 Frame = +2

Query: 142     RDKKVEYVNSMATFRDSHTIEYVAMPGAEHRQVTSEYVVVAVGGRPRYPDIPGAVELGI- 200
               R   +   +  A F     +E  A    + R++   + +VA G  P  PD+PG  E    
Sbjct: 1395992 RHPNLSVFSGTAEFVSEDCVEVAA--DGDRRRLAFAHCIVATGASPALPDVPGLREAPYR 1396165

Query: 201     TSDDIFSYEREPGRTLVVGAGYVGLECACFLKGLGYEPTVMVRSIVLRGFDRQMSELLAA 260
               T    +  E  P R +V+G G    E A  L  LG    +  R   L   D   + ++  
Sbjct: 1396166 THLSWYDCEELPRRAVVLGGGPQAAETAQALSVLGCRVCLAARGEFLPREDAAAASVVRR 1396345

Query: 261     MMTERGIPFLGTT--IPKAVERQADGRLLVRYRNTTTQMDGSDVF---DTVLWAIGRKGL 315
                +   G+  L     +  +V+      + V  R T             D +L A GRK  
Sbjct: 1396346 ELEADGVEILTNVSFVAVSVDEAEALPVGVAIRETNDFYASEKRVLRCDALLVAAGRKPR 1396525

Query: 316     IEDLNLDAAGVK-THDDKIVVDAAEATSVPHIFAVGDIIYGRPELTPVAILSGRLLARRL 374
               +  L LDAAGV     + I VD    TS P IFA GD+  G         ++   +   L
Sbjct: 1396526 VAGLGLDAAGVAYDAQNGIRVDGMLRTSNPRIFAAGDVASGYQHAHAAVAMAAAAVENAL 1396705

Query: 375     FAGSTQLMDYADVAT--TVFTPLEYSCVGMSEETAIELRGADNIEVFHGYYKPTEFFIPQ 432
               F G     D+  V       T  E + VG+ E        A   +V+       +  I  
Sbjct: 1396706 FGGDA---DFGAVLLPWVTHTAPELAHVGLYERDV-----AGGCDVYETDLAHVDRAILD 1396861

Query: 433     KSVRHCYLKAVAEVSGDQKILGLHYIGPVAGEVIQGFAAALKTGLTVKTLLNTVGIHPTT 492
                      L  V    G  +ILG   + P AG++I   A A+   L +  L   V  +P  
Sbjct: 1396862 GD--EGGLVRVVTARGSDEILGATVVAPHAGDLIAEIAVAMHGKLGLGELGRVVVPYPAL 1397035

Query: 493     AE 494
               A+
Sbjct: 1397036 AQ 1397041



 Score = 47.0 bits (110), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 61/195 (31%), Positives = 84/195 (43%), Gaps = 18/195 (9%)
 Frame = -1

Query: 180    VVAVGGRPRYPDIPGAVELGI----TSDDI---FSYEREPGRTL--VVGAGYVGLECACF 230
              V+A G  P  P + G    G+    T DD+    +Y+   G T   VVG G +GLE A  
Sbjct: 390970 VLATGSYPFVPPVEGKDLDGVFVYRTVDDLERLVAYQEAHGVTAAAVVGGGLLGLEAAKA 390791

Query: 231    LKGLG-------YEPTVMVRSIVLRGFDRQMSELLAAMMTERGIPFLGTTIPKAVERQAD 283
              +  LG       Y P +M R I     D      LA+M+ + G+        KA E  AD
Sbjct: 390790 MHDLGMKTHILEYAPILMCRQI-----DAGGHAALASMVEDLGLEIHCDARTKAFEAGAD 390626

Query: 284    GRLL-VRYRNTTTQMDGSDVFDTVLWAIGRKGLIEDLNLDAAGVKTHD-DKIVVDAAEAT 341
              GR+  V + N     +G D  D  +  +   G+     L    V  H+   +VVD    T
Sbjct: 390625 GRVAGVSFTN-----EGWDDLDVGIVVVS-AGIRPRDELARDVVDVHERGGVVVDDELRT 390464

Query: 342    SVPHIFAVGDIIYGR 356
              S P IFAVG++   R
Sbjct: 390463 SDPAIFAVGEVALHR 390419


>scaffold_10
          Length = 1654512

 Score = 45.8 bits (107), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 83/339 (24%), Positives = 132/339 (38%), Gaps = 28/339 (8%)
 Frame = +1

Query: 168    GAEHRQVTSEYVVVAVGGRP-RYP--DIPGAVELG----ITSDDIFSYEREPGRTLVVGA 220
              G+    V  ++ VVA G R  R+   D  GA   G      SD +      P R ++VG 
Sbjct: 697999 GSAGTTVRGKHCVVATGSRAVRFDGLDYDGADAAGRRRVYDSDSVKGLSFLPRRVVIVGG 698178

Query: 221    GYVGLECACFLKGLGYEPTVMVRSIVLR------GFDRQMSELLAAMMTERGIPFLGTTI 274
              G + +E A     L  + T++VRS  L       G D  ++  L A + + G+  L    
Sbjct: 698179 GIIAVEYARIFAALAADVTLVVRSADLPKSLRRVGIDAGLAGALQADLRDAGVDIL---- 698346

Query: 275    PKAVERQADGRLLVRYRNTTTQMDGSDV-FDTVLWAIGRKGLIEDLNLDAA---GVKTHD 330
                  E +  G  L          DG  +  D +L A GR  +   +  DAA   G+   +
Sbjct: 698347 ---FETEIAGAALAGAAVAVALRDGRTLEADVLLTATGRAAVTRGVFDDAALVDGLLAPN 698517

Query: 331    DKIVVDAAEATSVPHIFAVGDIIYGRPELTPVAILSGRLLARRLFAGSTQLMDYAD---V 387
                ++VD    T    +   GD++ G P+L    I         ++     L D +    +
Sbjct: 698518 GDLLVDGELKTVHRAVSGAGDVV-GAPQLASTGIAQAEAAVDCVYGDGCALGDVSPAGLL 698694

Query: 388    ATTVFTPL------EYSCVGMSEETAIELRGADNIEVFHGYYKPTEFFIPQK--SVRHCY 439
              A+T   P+      E +  G++ E A + RG D +     Y       + +   S R C 
Sbjct: 698695 ASTARYPVGIWTVPELAFCGLTAEAAAD-RGLDVVVGVAHYADTVRGHVRESDASTRSC- 698868

Query: 440    LKAVAEVSGDQKILGLHYIGPVAGEVIQGFAAALKTGLT 478
              LK V        ILG+H  G  A E++      ++  +T
Sbjct: 698869 LKLVVARDAPHTILGVHLFGDDAAELVHFGTTLVQASMT 698985


>scaffold_6
          Length = 2755913

 Score = 34.3 bits (77), Expect = 0.37,   Method: Composition-based stats.
 Identities = 29/113 (25%), Positives = 47/113 (41%), Gaps = 1/113 (0%)
 Frame = -2

Query: 141    LRDKKVEYVNSMATFRDSHTIEYVAMPGAEHRQVTSEYVVVAVGGRP-RYPDIPGAVELG 199
              L+  +V Y    AT      +    + GA    V    ++V  G  P R   +P      
Sbjct: 945052 LKKFRVGYQQGTATLLGDGKVRVDRVGGAGCVDVAGAKLLVCCGSVPMRVGGVPFDGRRV 944873

Query: 200    ITSDDIFSYEREPGRTLVVGAGYVGLECACFLKGLGYEPTVMVRSIVLRGFDR 252
                +D I +    P   ++VG+G + +E A   + LG   T++VRS +    DR
Sbjct: 944872 FDADSINTLGFLPKSVVIVGSGIIAIEYAMIFRKLGAAVTMLVRSSMTSALDR 944714


>scaffold_5
          Length = 3000003

 Score = 32.0 bits (71), Expect = 2.0,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 7/91 (7%)
 Frame = -3

Query: 175    TSEYVVVAVGGRPRYPDIPGAVEL---GI----TSDDIFSYEREPGRTLVVGAGYVGLEC 227
              T+  +VVA G  PR+   PG  EL   G+    T D  F  +R+    +VVG G   +E 
Sbjct: 719806 TTSALVVATGASPRWLGAPGERELLSRGVHTCATCDGYFYRDRD---VVVVGGGDTAMEQ 719636

Query: 228    ACFLKGLGYEPTVMVRSIVLRGFDRQMSELL 258
              A FL  +     V+ R    R      + +L
Sbjct: 719635 ALFLARIANRVYVVHRKNSFRASKAMATRVL 719543


>scaffold_12
          Length = 1412611

 Score = 29.6 bits (65), Expect = 9.7,   Method: Composition-based stats.
 Identities = 30/81 (37%), Positives = 34/81 (41%), Gaps = 13/81 (16%)
 Frame = +1

Query: 160    TIEYVAMPGAEHRQVTSEYV-------------VVAVGGRPRYPDIPGAVELGITSDDIF 206
              T EYVA+   E    TS YV             VVA+    R P +  A  LGI S D  
Sbjct: 968920 TGEYVALSKVESALKTSPYVEVPIVVGRQGADRVVALVQPQRPPLVALAKSLGIASADAA 969099

Query: 207    SYEREPGRTLVVGAGYVGLEC 227
              +  REP     V A  VG EC
Sbjct: 969100 ALCREPKVVAAVYASCVG-EC 969159


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000063_1.0 # Protein # Thioredoxin reductase 1 (TR1) #
Caenorhabditis elegans # Complete
         (667 letters)

Database: genome.fa 
           1185 sequences; 56,660,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

scaffold_11                                                           423   e-118
scaffold_8                                                            238   1e-62
scaffold_41                                                           195   1e-49
scaffold_9                                                            104   5e-22
scaffold_3                                                            100   6e-21
scaffold_7                                                             46   2e-04
scaffold_10                                                            40   0.009
scaffold_2                                                             35   0.31 
scaffold_14                                                            35   0.44 
scaffold_61                                                            33   0.90 
scaffold_20                                                            31   5.0  
scaffold_1                                                             31   5.4  

>scaffold_11
          Length = 1405779

 Score =  423 bits (1088), Expect = e-118,   Method: Composition-based stats.
 Identities = 241/493 (48%), Positives = 315/493 (63%), Gaps = 8/493 (1%)
 Frame = -3

Query: 173    YDLIVIGGGSGGLAAAKEASRLGKKVACLDFVKPSPQGTSWGLGGTCVNVGCIPKKLMHQ 232
              YD++V+GGGSGGLA +KE ++LG KVA LDFVKPSP G++WGLGGTCVNVGCIPKKLMH 
Sbjct: 787984 YDVVVVGGGSGGLACSKECAKLGAKVAVLDFVKPSPAGSTWGLGGTCVNVGCIPKKLMHT 787805

Query: 233    ASLLGHSIH-DAKKYGWKLPEGKVEHQWNHLRDSVQDHIASLNWGYRVQLREKTVTYINS 291
              AS++G ++  DA  +GWK       H W  ++ +VQDHI SLN+ YRV LRE  +TY+N 
Sbjct: 787804 ASIIGETLKDDAAAFGWKDAAAGA-HDWESMKSTVQDHIKSLNFKYRVALREAGITYLNR 787628

Query: 292    YGEFTGPFEISATNKKKKVEKLTADRFLISTGLRPKYPEIPGVKEYTITSDDLFQLPYSP 351
               GEF     IS T+KK     +TA RF+++ G RP     PG  E+ I SDDLF LP +P
Sbjct: 787627 LGEFEDKNTISLTDKKGNKTSVTAARFIVAVGGRPNKLGCPG-GEHAIDSDDLFSLPKAP 787451

Query: 352    GKTLCVGASYVSLECAGFLHGFGFDVTVMVRSILLRGFDQDMAERIRKHMIAYGMKFEAG 411
              G+ LCVG  Y++LEC GF  G G+  T MVRSILLRGFD++   +I  H+  +G++ + G
Sbjct: 787450 GRVLCVGGGYIALECGGFTAGMGYPTTCMVRSILLRGFDRECVGKIEAHIKHHGVQLQVG 787271

Query: 412    V-PTRIEQIDEKTDEKAGKYRVFWPKKNEETGEMQEVSEEYNTILMAIGREAVTDDVGLT 470
              V P +IE+     D   G   V      +  G +     EY+T+L+A GR A T  +G+ 
Sbjct: 787270 VTPAKIEK-----DAATGVLTV-----TDSGGGVH----EYDTVLVATGRYADTAALGID 787133

Query: 471    TI-GVE---RAKSKKVLGRREQSTTIPWVYAIGDVLEGTPELTPVAIQAGRVLMRRIFDG 526
               + G      AK+KK+    EQ    P VYAIGDV+EG PELTPVAI+AG  L RR+F G
Sbjct: 787132 NVPGASANVNAKTKKLECVDEQLPGAPHVYAIGDVVEGRPELTPVAIEAGLRLARRLFGG 786953

Query: 527    ANELTEYDQIPTTVFTPLEYGCCGLSEEDAMMKYGKDNIIIYHNVFNPLEYTISERMDK- 585
                E  +Y+ + TT+FTPLEYG  GLSE+DA  + G+ N+  Y + F PLEY +SE   + 
Sbjct: 786952 KTEPMDYECVATTIFTPLEYGTIGLSEDDAKAQLGECNVESYISEFAPLEYALSETRSER 786773

Query: 586    -DHCYLKMICLRNEEEKVVGFHILTPNAGEVTQGFGIXXXXXXXXXDFDRLIGIHPTVAE 644
               D C+ K++ +     KVVGFH L PNAGE+TQGF I         DF   +GIHPTVAE
Sbjct: 786772 GDGCFAKLV-VDKSTGKVVGFHYLGPNAGEITQGFSIAMRKGATYADFISTVGIHPTVAE 786596

Query: 645    NFTTLTLEKKEGD 657
               FT++T+ K  G+
Sbjct: 786595 EFTSMTVTKSSGE 786557



 Score = 30.8 bits (68), Expect = 7.0,   Method: Composition-based stats.
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = -2

Query: 176     IVIGGGSGGLAAAKEASRLGKKVACLD 202
               +VIG G  GL AAKE    G  V CL+
Sbjct: 1350644 VVIGAGPCGLVAAKELREAGHDVVCLE 1350564


>scaffold_8
          Length = 1961717

 Score =  238 bits (608), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 173/487 (35%), Positives = 245/487 (50%), Gaps = 10/487 (2%)
 Frame = -2

Query: 173     YDLIVIGGGSGGLAAAKEASRL-GKKVACLDFVKPSPQGTSWGLGGTCVNVGCIPKKLMH 231
               +D +VIG GSGG+A+AK A+++ GKKVA ++            LGGTCVNVGC+PKK+M 
Sbjct: 1269286 FDYLVIGAGSGGIASAKRAAQVHGKKVAVVE---------RGALGGTCVNVGCVPKKVMF 1269134

Query: 232     QASLLGHSIHDAKKYGWKLPEGKVEHQWNHLRDSVQDHIASLNWGYRVQLREKTVTYINS 291
                A+ +   +HDA  Y +   E  V+  W  L+ +  +++  LN  Y   L    +T +  
Sbjct: 1269133 NAAHIMECLHDAPLYQYSGAE-DVKLDWGKLKTARDNYVVRLNGIYGRGLDGADITTLTG 1268957

Query: 292     YGEFTGPFEISATNKKKKVEKLTADRFLISTGLRPKYP-EIPGVKEYTITSDDLFQLPYS 350
                  F    E+         E  TAD  L++ G  P  P E+ G  E+TITSD  F+L   
Sbjct: 1268956 LASFGDDGEVMVGG-----EAYTADHVLVAVGGVPSLPLELEG-GEHTITSDGFFELEAM 1268795

Query: 351     PGKTLCVGASYVSLECAGFLHGFGFDVTVMVR-SILLRGFDQDMAERIRKHMIAYGMKFE 409
               P   L VGA Y+++E AG L+  G D T+ VR    LR FD+ ++  +   M   GMK  
Sbjct: 1268794 PESCLVVGAGYIAVEMAGILNALGCDTTLAVRGDKALRAFDELLSTTLDAEMKRAGMKIA 1268615

Query: 410     AGVP-TRIEQIDEKTDEKAGKYRVFWPKKNEETGEMQEVSEEYNTILMAIGREAVTDDVG 468
                G    ++E +D K        +V         G   EV       LMA+GR+ + + + 
Sbjct: 1268614 TGTTLAKVELVDGK--------KVVTTTDGATLGPFDEV-------LMAVGRKPLVEPLK 1268480

Query: 469     LTTIGVERAKSKKVLGRREQSTTIPW-VYAIGDVLEGTPELTPVAIQAGRVLMRRIFDG- 526
               L   GV+      V     Q TT    VYA+GDV  G  ELTP+AI AGR L  R+F G 
Sbjct: 1268479 LENAGVDLNDEGYVAVDEYQRTTSEHNVYALGDVC-GAIELTPMAIAAGRRLSDRLFGGP 1268303

Query: 527     --ANELTEYDQIPTTVFTPLEYGCCGLSEEDAMMKYGKDNIIIYHNVFNPLEY--TISER 582
                 AN   +Y+ +PT VF+    G  GL+E +A+ KYG+ N+ ++ + F  L Y     + 
Sbjct: 1268302 ECANAKADYEGVPTVVFSHPTIGTIGLTEAEALEKYGEANVKVWTSTFVNLWYGPMPIDP 1268123

Query: 583     MDKDHCYLKMICLRNEEEKVVGFHILTPNAGEVTQGFGIXXXXXXXXXDFDRLIGIHPTV 642
                DK    +K++      E VVG H++   A E+ QGFG+         DFD  I +HPT 
Sbjct: 1268122 SDKPKTAMKLVT-AGANELVVGLHVIGLGADEMLQGFGVAMKMGATKADFDSCIALHPTA 1267946

Query: 643     AENFTTL 649
               AE F TL
Sbjct: 1267945 AEEFVTL 1267925



 Score = 32.7 bits (73), Expect = 1.8,   Method: Composition-based stats.
 Identities = 30/98 (30%), Positives = 48/98 (48%), Gaps = 2/98 (2%)
 Frame = -3

Query: 139     SWPLMYIKGNAVGGLKEL--KALKQDYLKEWLRDHTYDLIVIGGGSGGLAAAKEASRLGK 196
               +W L+ +   A G + +L  ++++       + D  YD++++G G GG  AA  A   G 
Sbjct: 1713909 AWKLIALTALAHGLVPKLPARSVRASRSALQMHDFDYDVVIVGCGVGGHGAALHARSQGL 1713730

Query: 197     KVACLDFVKPSPQGTSWGLGGTCVNVGCIPKKLMHQAS 234
                 A L         +   +GGTCVN GC+P K +  AS
Sbjct: 1713729 SCAVL---------SGGDVGGTCVNRGCVPSKALLAAS 1713643


>scaffold_41
          Length = 407180

 Score =  195 bits (496), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 157/490 (32%), Positives = 230/490 (46%), Gaps = 12/490 (2%)
 Frame = +1

Query: 172    TYDLIVIGGGSGGLAAAKEASRLGKKVACLD---FVKPSPQGTSWGLGGTCVNVGCIPKK 228
              T+D+IV+GGGSGG A A+ A+  G +V  +D       S + T  G GGTCVNVGC+PKK
Sbjct: 241024 TFDVIVLGGGSGGSAFARRAAGYGARVLLVDKGPTRDASGKRTGAGFGGTCVNVGCVPKK 241203

Query: 229    LMHQA-----SLLGHSIHDAKKYGWKLPEGKVEHQWNHLRDSVQDHIASLNWGYRVQLRE 283
              +M+ A     S LG +   A   G  L  G V+  W  L+     ++A LN  Y    ++
Sbjct: 241204 IMYNAAHCRESALGPTA-TAAGLGVSLSGGAVD--WAALKRRRDAYVAGLNAAYERNWKK 241374

Query: 284    KTVTYINSYGEFTGPFEISATNKKKKVEKLTADRFLISTGLRPKYPEIPGVKEYTITSDD 343
                V  +     F     I+    +       AD  +++ G  P   +IPG     + SDD
Sbjct: 241375 AGVEVLVGAASFVDARTIAVDGNR-----YAADEVVVAVGGAPASLDIPG-GALAVDSDD 241536

Query: 344    LFQLPYSPGKTLCVGASYVSLECAGFLHGFGFDVTVMVR--SILLRGFDQDMAERIRKHM 401
               F L   P K   VGA Y+++E AG LHG G D  +  R  ++L RGFD  + E I   +
Sbjct: 241537 FFDLEDLPKKVCVVGAGYIAVELAGILHGLGSDADLAFRGDTVLRRGFDPFVVETIMGEL 241716

Query: 402    IAYGMKF-EAGVPTRIEQIDEKTDEKAGKYRVFWPKKNEETGEMQEVSEEYNTILMAIGR 460
               A+G        P  +        E+ GK  +         G        Y+ ++ A+GR
Sbjct: 241717 EAHGPNLVRRATPAAVV-------EERGKLTLELEDGRRLAG--------YDAVVAAVGR 241851

Query: 461    EAVTDDVGLTTIGVERAKSKKVLGRREQSTTIPWVYAIGDVLEGTPELTPVAIQAGRVLM 520
                 T  + L   GV      +V+    Q+++   VYA+GD  +   ELTPVAI AGR L 
Sbjct: 241852 APATAALRLENAGVAVDARGRVIVDDYQNSSARGVYAVGDACDRGYELTPVAIAAGRRLA 242031

Query: 521    RRIFDG-ANELTEYDQIPTTVFTPLEYGCCGLSEEDAMMKYGKDNIIIYHNVFNPLEYTI 579
               R+F G      +Y  I T VF+    G  GL+E  A  +YG  ++ +  + F  + + +
Sbjct: 242032 DRLFGGEPRARLDYADISTVVFSHPPIGVVGLTEPAARARYG--DVAVKESRFPSMAFAL 242205

Query: 580    SERMDKDHCYLKMICLRNEEEKVVGFHILTPNAGEVTQGFGIXXXXXXXXXDFDRLIGIH 639
              +    K    LK++ L   EE+VVG H++ P + E+ QGF +         D +  + IH
Sbjct: 242206 NGAGAKVTTALKLV-LAGPEERVVGLHLVGPGSDEMLQGFAVALKMGATRSDLEAAVAIH 242382

Query: 640    PTVAENFTTL 649
              PTVAE   T 
Sbjct: 242383 PTVAEELVTF 242412


>scaffold_9
          Length = 1602328

 Score =  104 bits (259), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 122/482 (25%), Positives = 192/482 (39%), Gaps = 10/482 (2%)
 Frame = +2

Query: 173    YDLIVIGGGSGGLAAAKEASRLGKKVACLDFVKPSPQGTSWGLGGTCVNVGCIPKKLMHQ 232
              YDL+ +G G+GGL +AK+A+R G + A ++         S   GG C+NVGC+P K + +
Sbjct: 797924 YDLVALGAGAGGLVSAKQAARRGARSALIE---------SHLAGGDCLNVGCVPSKALLR 798076

Query: 233    ASLLGHSIHDAKKYGWK-----LPEGKVEHQWNHLRDSVQDHIASLNWGYRVQLREKTVT 287
               +          ++G       +  G V  +   LR  +    A                
Sbjct: 798077 CARAAREARRGAEFGVDGAAVAVDFGAVMERMRRLRARIAPADAH------AATAAVGAD 798238

Query: 288    YINSYGEFTGPFEISATNKKKKVEKLTADRFLISTGLRPKYPEIPGVKEYTI-TSDDLFQ 346
                   G F GP EI    +  K  K      +++TG +   P IPG+ E    T+  LF 
Sbjct: 798239 VFQGRGVFVGPNEIEVNGQTLKFRKA-----VVATGGQAAVPSIPGLAEAPYHTNATLFN 798403

Query: 347    LPYSPGKTLCVGASYVSLECAGFLHGFGFDVTVMVRSI-LLRGFDQDMAERIRKHMIAYG 405
                  P + + VGA  + LE A  L  FG  VT ++RS  +L   D D A  +R  +   G
Sbjct: 798404 ATALPPRVVVVGAGPIGLEMAQALAVFGSKVTCVLRSAKVLPKEDPDAAALVRAALERDG 798583

Query: 406    MKFEAGVPTRIEQIDEKTDEKAGKYRVFWPKKNEETGEMQEVSEEYNTILMAIGREAVTD 465
              + F  G   +  +++    +K   +       + +  E +    E   +L+A GR+   +
Sbjct: 798584 VAFVTGAAYK--RVEHAPPKKGAAFPTIGVAVDVDGAETR---LECEMLLVATGRKPNVE 798748

Query: 466    DVGLTTIGVERAKSKKVLGRREQSTTIPWVYAIGDVLEGTPELTPVAIQAGRVLMRRIFD 525
                GL   GV       V       TT P VYA+GDV             AG V+   +F 
Sbjct: 798749 HCGLDKAGVAFDVRDGVQVDDYLRTTNPDVYAVGDVCTRYQFTHVAGTMAGMVVDNALFR 798928

Query: 526    GANELTEYDQIPTTVFTPLEYGCCGLSEEDAM---MKYGKDNIIIYHNVFNPLEYTISER 582
              G +  ++   +P   +T  E    GL E D     +        + HN    LE   +E 
Sbjct: 798929 GRHAFSKL-VVPWATYTEPEVAHVGLYERDVASQGLACDTYTTALAHNDRAILE-GATEG 799102

Query: 583    MDKDHCYLKMICLRNEEEKVVGFHILTPNAGEVTQGFGIXXXXXXXXXDFDRLIGIHPTV 642
                K HC       R   ++++G  I+  +AGE+     +            + I  +PTV
Sbjct: 799103 FVKVHC-------RKGTDEILGATIVADHAGELISELTLAIQANVGLGTIGKTIHPYPTV 799261

Query: 643    AE 644
              +E
Sbjct: 799262 SE 799267



 Score =  100 bits (248), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 99/401 (24%), Positives = 162/401 (40%), Gaps = 9/401 (2%)
 Frame = -3

Query: 253     GKVEHQWNHLRDSV-QDHIASLNWGY----RVQLREKTVTYINSYGEFTGPFEISATNKK 307
               G + H    LR+++ +  I+   W      R   ++  V Y+  +G  TGP  ++     
Sbjct: 1366340 GNIIHASRALRETIARPRISRNEWKPVAPPRFLFKKYKVDYLQGHGTITGPNSVAVALND 1366161

Query: 308     KKVEKLTADRFLISTGLRPK-YPEIP--GVKEYTITSDDLFQLPYSPGKTLCVGASYVSL 364
                  E + +   LI+TG  P   P  P        + S     L   P     VG   + L
Sbjct: 1366160 GGSEAVESKNILIATGSEPSPLPPCPVDNAGGKIVDSTGALVLDKIPKTMAVVGGGVIGL 1365981

Query: 365     ECAGFLHGFGFDVTVM-VRSILLRGFDQDMAERIRKHMIAYGMKFEAGVPTRIEQIDEKT 423
               E        G  VTV+     ++ G D+++ +   + +   GMKF+        ++ +  
Sbjct: 1365980 EMGSVWRRLGTKVTVVEYLGNIVPGVDKEVGKAFLRVLKKQGMKFKLNTGVVASEVVD-- 1365807

Query: 424     DEKAGKYRVFWPKKNEETGEMQEVSEEYNTILMAIGREAVTDDVGLTTIGVERAKSKKVL 483
                   G      P K+      +E ++ ++ +L+A GR   TD +GL  +G+E  K  +V+
Sbjct: 1365806 ---GGVELTHAPAKDPS----KETTDRFDVVLVATGRRPFTDKLGLDALGIETDKLGRVV 1365648

Query: 484     GRREQSTTIPWVYAIGDVLEGTPELTPVAIQAGRVLMRRIFDGANELTEYDQIPTTVFTP 543
                     T IP +YA GDV++G P L   A + G   +  I   A  +  YD IP  ++T 
Sbjct: 1365647 VDEHFKTKIPSIYAFGDVVDG-PMLAHKAEEEGIACVESIAGFAGHVN-YDVIPGVIYTH 1365474

Query: 544     LEYGCCGLSEEDAMMKYGKDNIIIYHNVFNPLEYTISERMDKDHCYLKMICLRNEEEKVV 603
                E    G +EE       KD  + Y     P       R   D   L  +      ++++
Sbjct: 1365473 PELATAGKTEEQL-----KDEGVDYVVGSFPFSANSRARAVGDSEGLVKVLCDKATDRIL 1365309

Query: 604     GFHILTPNAGEVTQGFGIXXXXXXXXXDFDRLIGIHPTVAE 644
               G HI+ PNAGE+     +         D  R    HPT++E
Sbjct: 1365308 GVHIIGPNAGEMIAEGVLGMEYGASSEDIARTCHAHPTLSE 1365186


>scaffold_3
          Length = 3001400

 Score =  100 bits (249), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 115/491 (23%), Positives = 199/491 (40%), Gaps = 19/491 (3%)
 Frame = +2

Query: 173     YDLIVIGGGSGGLAAAKEASRLGKKVACLDFVKPSPQGTSWGLGGTCVNVGCIPKKLMHQ 232
               YDL+VIG G  GL +   A  LGKK   ++            +GG C+NVGC P K +  
Sbjct: 2787599 YDLVVIGAGVAGLLSVIVAKSLGKKALLIE---------KHYMGGDCLNVGCFPSKALIA 2787751

Query: 233     ASLLGHSIHDAKKYGWKLPE------GKVEHQWNHLRDSVQDHIASLNWGYRVQLREKTV 286
                +   H +  A  +G  +        G V  +   LR  +  H     +G     R+   
Sbjct: 2787752 CARKCHELKHAADFGVTVSGDVTVDFGFVMKRMRALRAGIAPHDGVERYG-----RDFCD 2787916

Query: 287     TYINSYGEFTGPFEISATNKKKKVEKLTADRFLISTGLRPKYPEIPGVKEYT-ITSDDLF 345
                      +F  P E+  T+   + + +  D+ +I+TG       +PG+++   +T+ + F
Sbjct: 2787917 DVCVGVAKFASPTEVVITSHGGETQSVAFDKCMIATGASAAVVPVPGLRDCPHLTNGNFF 2788096

Query: 346     QLPYSPGKTLCVGASYVSLECAGFLHGFGFDVTVM-VRSILLRGFDQDMAERIRKHMIAY 404
                L   P +   +GA  + +E A  L  FG  VT+  V   LL   D D A+ + + +IA 
Sbjct: 2788097 NLEALPPRACLIGAGPIGIEMAQSLQRFGCAVTIFEVAPQLLPREDPDAAKLVTEALIAD 2788276

Query: 405     GMKFEAGVPTRIEQIDEKTDEKAGKYRVFWPKKNEETGEMQEVSEEYN--TILMAIGREA 462
               G++    V     ++  +   KA      WP  +         ++ +    +L A GR  
Sbjct: 2788277 GVEVHYAVKITGIKLAGELAMKAP-----WPTYDVSVTLSDGTAKVFQCEALLNATGRAP 2788441

Query: 463     VTDDVGLTTIGVERAKSKKVLGRREQSTTIPWVYAIGDVLEGTP-ELTPVAIQAGRVLMR 521
                   +GL   GV+      V       T+ P +Y+ GD    +P + T  A    R  +R
Sbjct: 2788442 NVSGIGLDEAGVDYDTRTGVHISDLYETSAPNIYSCGDC--ASPYKFTHAADWQARCAVR 2788615

Query: 522     RIFDGANELTEYDQIPTTVFTPLEYGCCGLSEEDAMMKYGKDNIIIYHNVFNPLEYTISE 581
                +F  AN       +P   +T  E    GL E++       D+  I ++ +      + +
Sbjct: 2788616 NMFLQANSKHSDLLVPWATYTDPEIAHVGLYEKEM------DDKGIAYDTY------VRQ 2788759

Query: 582     RMDKDHC--------YLKMICLRNEEEKVVGFHILTPNAGEVTQGFGIXXXXXXXXXDFD 633
                 D D C        ++K+ C +  ++ ++G  I+ P AG++     +         D  
Sbjct: 2788760 FKDVDRCKCEGVTSGFVKISCAKGSDQ-ILGSTIVGPCAGDLISEITVCMQNGIGCKDIA 2788936

Query: 634     RLIGIHPTVAE 644
                ++  +PT AE
Sbjct: 2788937 GVMHPYPTTAE 2788969


>scaffold_7
          Length = 2177197

 Score = 45.8 bits (107), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 102/490 (20%), Positives = 186/490 (37%), Gaps = 17/490 (3%)
 Frame = +2

Query: 172     TYDLIVIGGGSGGLAAAKEASRLGKKVACLDFVKPSPQGTSWGLGGTCVNVGCIPKK--- 228
               TYDL+V+G G+ GLAAA +A+R G + A ++         +   GG  +   C+P K   
Sbjct: 1395677 TYDLVVVGAGAAGLAAATQAARRGARTALVE---------ASLFGGASLTSACVPAKALA 1395829

Query: 229     -----LMHQASLLGHS------IHDAKKYGWKLPEGKVEHQWNHLRDSVQDHIASLNWGY 277
                    +    S L H       +H A  +G      +         D+ +          
Sbjct: 1395830 RAARCVRAARSSLAHELGVNAPVHKAADFGAVARRMRRLRARLAAADAPK---------- 1395979

Query: 278     RVQLREKTVTYINSYGEFTGP--FEISATNKKKKVEKLTADRFLISTGLRPKYPEIPGVK 335
                ++ R   ++  +   EF      E++A   ++   +L     +++TG  P  P++PG++
Sbjct: 1395980 HLEKRHPNLSVFSGTAEFVSEDCVEVAADGDRR---RLAFAHCIVATGASPALPDVPGLR 1396150

Query: 336     EYTI-TSDDLFQLPYSPGKTLCVGASYVSLECAGFLHGFGFDVTVMVRSILLRGFDQDMA 394
               E    T    +     P + + +G    + E A  L   G  V +  R   L   D   A
Sbjct: 1396151 EAPYRTHLSWYDCEELPRRAVVLGGGPQAAETAQALSVLGCRVCLAARGEFLPREDAAAA 1396330

Query: 395     ERIRKHMIAYGMKFEAGVPTRIEQIDEKTDEKAGKYRVFWPKKNEETGEMQEVSEEYNTI 454
                 +R+ + A G++    V      +DE      G   V   + N+     + V    + +
Sbjct: 1396331 SVVRRELEADGVEILTNVSFVAVSVDEAEALPVG---VAIRETNDFYASEKRVL-RCDAL 1396498

Query: 455     LMAIGREAVTDDVGLTTIGVERAKSKKVLGRREQSTTIPWVYAIGDVLEGTPELTPVAIQ 514
               L+A GR+     +GL   GV       +       T+ P ++A GDV  G          
Sbjct: 1396499 LVAAGRKPRVAGLGLDAAGVAYDAQNGIRVDGMLRTSNPRIFAAGDVASGYQHAHAAVAM 1396678

Query: 515     AGRVLMRRIFDGANELTEYDQIPTTVFTPLEYGCCGLSEEDAMMKYGKDNIIIYHNVFNP 574
               A   +   +F G  +      +P    T  E    GL E D  +  G D   +Y      
Sbjct: 1396679 AAAAVENALFGGDADFGAV-LLPWVTHTAPELAHVGLYERD--VAGGCD---VYETDLAH 1396840

Query: 575     LEYTISERMDKDHCYLKMICLRNEEEKVVGFHILTPNAGEVTQGFGIXXXXXXXXXDFDR 634
               ++  I   +D D   L  +      ++++G  ++ P+AG++     +         +  R
Sbjct: 1396841 VDRAI---LDGDEGGLVRVVTARGSDEILGATVVAPHAGDLIAEIAVAMHGKLGLGELGR 1397011

Query: 635     LIGIHPTVAE 644
               ++  +P +A+
Sbjct: 1397012 VVVPYPALAQ 1397041



 Score = 32.7 bits (73), Expect = 1.7,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = +1

Query: 376     DVTVMVRSILLRGFDQD-MAERIRKHMIAYGMKFEAGVPTRIEQIDEKTDEKAGK 429
               DV + VR    RG   D +AE  R H+   G   E G   R+E++DE+ D +AG+
Sbjct: 1376653 DVELAVRR---RGQRLDPVAEDARVHVRVRGGPVERGAAGRVERVDERPDGRAGR 1376808


>scaffold_10
          Length = 1654512

 Score = 40.4 bits (93), Expect = 0.009,   Method: Composition-based stats.
 Identities = 105/464 (22%), Positives = 166/464 (35%), Gaps = 33/464 (7%)
 Frame = +3

Query: 187     AAKEASRLGKKVACLDFVKPSPQGTSWGLGGTCVNVGCIPKKLMHQASLLGHSIHDAKKY 246
               AA+ ++ LG KVA ++  +                 G + K L   +  LG +  D ++ 
Sbjct: 1161537 AARLSATLGHKVAVVEATRDGAL--------LAAPTGWVSKALRFASRELGTASGD-RRV 1161689

Query: 247     GWKLPEGKVEHQWNHLRDSVQDHIASLNWGYRVQLREKTVTYINSYGEFTGPFEISATNK 306
                W+     VE+             A L    RV+              F GP     TNK
Sbjct: 1161690 HWRDVGAYVENTAGRALGKTAAAFAPLVNEDRVE-------------AFAGPATFVGTNK 1161830

Query: 307     ----KKKVEKLTADRFLISTGLR-PKYP-EIPGVKEYTITSDDLFQLPYSPGKTLCVGAS 360
                      +E  T      STG R P  P + P   E+   SD +  +   P   L  G  
Sbjct: 1161831 IAVGDATLEAATVFLATGSTGTRVPSLPWDDPAAAEWLYDSDTIMGVGRLPEHVLIQGGG 1162010

Query: 361     YVSLECAGFLHGFGFDVTVMVRSILL---RGFDQDMAERIRKHMIAYGMKFEAGVPTRIE 417
                + +E A  L   G  VT+++R   L   +  D D+   I       G   + GV  R E
Sbjct: 1162011 VIGVEYAFILRHLGARVTLVLREPSLLDGKAVDDDIRSAIA------GRLEKVGVTVRYE 1162172

Query: 418     QIDEKTDEKA----GKYRVFWPKKNEETGEMQEVSEEYNTILMAIGREAVTDDVGLTTIG 473
                 D  + E      G  RV         G  +E++   + +L A+GR   T  + L   G
Sbjct: 1162173 DGDVVSAEPPRTPRGPGRVV-------LGSGEEIA--CDVVLSAVGRSGATASLDLAAGG 1162325

Query: 474     VERAKSK---KVLGRREQSTTIPWVYAIGDVLE----GTPELTPVAIQAGRVLMRRIFDG 526
               + RA  +    V     +++    V+A GD         P L    +    V +R  F  
Sbjct: 1162326 L-RATPQGHVDVDAATMRASGAARVWAAGDCAGRNAVSPPGLLSTGLAQCHVAVRDAFPE 1162502

Query: 527     -------------ANELTEYDQIPTTVFTPLEYGCCGLSEEDAMMKYGKDNIIIYHNVFN 573
                               + E     T ++     G  GLS E A   +G D   I     +
Sbjct: 1162503 EWAAYVAGHGSHVGEAVKEDKHAATALWIEDGVGAVGLSAEQAADAHGPDAASIAVPFND 1162682

Query: 574     PLEYTISERMDKDHCYLKMICLRNEEEKVVGFHILTPNAGEVTQ 617
                ++  +  R D +  +LK++  R+   +++G HI   +A E+ Q
Sbjct: 1162683 TIKACVQPRPDDE--FLKLVFQRS-TGRILGVHIFGRDAAEMVQ 1162805



 Score = 34.7 bits (78), Expect = 0.41,   Method: Composition-based stats.
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = +3

Query: 169    RDHTYDLIVIGGGSGGLAAAKEASRLGKKVACLDFVKP 206
              ++  +DL+VIGGG  G++AA  A+ LG     +D   P
Sbjct: 697392 QEREFDLVVIGGGPVGISAANRAASLGLSAILVDATPP 697505


>scaffold_2
          Length = 3465789

 Score = 35.0 bits (79), Expect = 0.31,   Method: Composition-based stats.
 Identities = 16/33 (48%), Positives = 22/33 (66%)
 Frame = +2

Query: 170    DHTYDLIVIGGGSGGLAAAKEASRLGKKVACLD 202
              D TYD++VIG G GGL+ A   +  GK+V  L+
Sbjct: 913766 DETYDVVVIGSGIGGLSCAGLLAAAGKRVCVLE 913864



 Score = 32.3 bits (72), Expect = 2.0,   Method: Composition-based stats.
 Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
 Frame = +1

Query: 338    TITSDDLFQLPYSPGKTLCVGASYVSLEC----AGFLHGFGFD 376
              T TS D   LP+  G   CVG  +  +E     AGFL  F FD
Sbjct: 141229 TETSADFAYLPFGGGARKCVGDQFAMMEATVALAGFLQRFDFD 141357


>scaffold_14
          Length = 1107847

 Score = 34.7 bits (78), Expect = 0.44,   Method: Composition-based stats.
 Identities = 51/209 (24%), Positives = 80/209 (38%)
 Frame = +1

Query: 15     PRQQEASSPANPHVSDTLSMGVAASGMXXXXXXXXXXXXTLPGETLVDAPGIPLKEALKE 74
              P +   S P  P   D+ +   A+S M            TLP +T +  PG P     + 
Sbjct: 234967 PPRSSTSRPP*PTAPDS-TKDAASSSMPHRMCSDGAP--TLPAKTTI--PGCPFPACGRA 235131

Query: 75     AANSKIVIFYNSSDEEKQLVEFETYLNSLKEPADAEKPLEIPEIKKLQVSRASQKVIQYL 134
              A+  +  +   S+   K           +    +  +   +P   K+Q +RA Q+V    
Sbjct: 235132 ASKLRFALAARSAKALK-----------MHRRKNCARWFGLP*STKMQAARAVQRVS--- 235269

Query: 135    TLHTSWPLMYIKGNAVGGLKELKALKQDYLKEWLRDHTYDLIVIGGGSGGLAAAKEASRL 194
                         +      L  +  LK DY    + DH+YD+ V+G G  GL AA  A+  
Sbjct: 235270 -----------RSRNARALSTVSGLKGDYT---VVDHSYDVCVVGAGGAGLRAAMGAAEA 235407

Query: 195    GKKVACLDFVKPSPQGTSWGLGGTCVNVG 223
              G K AC+  + P+   T    GG    +G
Sbjct: 235408 GFKTACVTKLFPTRSHTVAAQGGINAALG 235494


>scaffold_61
          Length = 124364

 Score = 33.5 bits (75), Expect = 0.90,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 7/67 (10%)
 Frame = +2

Query: 168   LRDHTYD-LIVIGGGSGGLAAAKEASRLGKKVACLDFVKPSPQ------GTSWGLGGTCV 220
             LR H+    + + GGSG +A  K A++   +V+ +     SPQ       T W  G  C 
Sbjct: 64586 LRLHSSSPAVCVAGGSGSVARGKSATKDASRVSIVPMKAKSPQPARRTKSTLWAWGHVCS 64765

Query: 221   NVGCIPK 227
             ++G I +
Sbjct: 64766 DLGWIDR 64786


>scaffold_20
          Length = 721792

 Score = 31.2 bits (69), Expect = 5.0,   Method: Composition-based stats.
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +2

Query: 173    YDLIVIGGGSGGLAAAKEASRLGKKVACLD 202
              YD++VIG G GGLA     ++ G+K   L+
Sbjct: 303599 YDVVVIGSGMGGLACGAMCAKYGEKAIVLE 303688


>scaffold_1
          Length = 3520325

 Score = 31.2 bits (69), Expect = 5.4,   Method: Composition-based stats.
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = -2

Query: 173     YDLIVIGGGSGGLAAAKEASRLGKKVACLD 202
               +D +V+G G GGL+AA   S  G+KV  ++
Sbjct: 1854634 FDAVVVGSGIGGLSAASVLSSFGRKVLVVE 1854545


  Database: genome.fa
    Posted date:  Feb 16, 2009  1:41 PM
  Number of letters in database: 56,660,578
  Number of sequences in database:  1185
  
Lambda     K      H
   0.319    0.138    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1185
Number of Hits to DB: 355,665,238
Number of extensions: 6106631
Number of successful extensions: 69345
Number of sequences better than 10.0: 188
Number of HSP's gapped: 68327
Number of HSP's successfully gapped: 2989
Length of database: 18,886,859
Neighboring words threshold: 13
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)
