TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000025_1.0 # Protein # Selenoprotein T (SelT) # Homo
sapiens # Complete
         (195 letters)

Database: genome.fa 
           1185 sequences; 56,660,578 total letters

Searching...................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

scaffold_44                                                            68   8e-12
scaffold_2                                                             28   7.0  

>scaffold_44
          Length = 313712

 Score = 67.8 bits (164), Expect = 8e-12
 Identities = 41/133 (30%), Positives = 70/133 (52%), Gaps = 1/133 (0%)
 Frame = +2

Query: 44     QICVSXGYRRVFEEYMRVISQRYPDIR-IEGENYLPQPIYRHIASFLSVFKLVLIGLIIV 102
              ++C S G +R + E  + +   YP +R +  E Y P  +    A    + ++  + L++ 
Sbjct: 140408 KLCTS*GTQRNYLELRKFLEDAYPGLRSVAAEQYPPPAVGVFAAQAAGMAQVACVALLLG 140587

Query: 103    GKDPFAFFGMQAPSIWQWGQENKVYACMMVFFLSNMIENQCMSTGAFEITLNDVPVWSKL 162
              G+  F  FG   P  +    ENK+ A   V+ ++N +  Q ++TGAFEI +N    +SKL
Sbjct: 140588 GEKVFQLFGAATPGWYHSVAENKMMAFGAVW-MANNVAAQMVATGAFEIHVNGELAFSKL 140764

Query: 163    ESGHLPSMQQLVQ 175
              E+G LPS   +V+
Sbjct: 140765 ETGRLPSAADVVR 140803


>scaffold_2
          Length = 3465789

 Score = 28.1 bits (61), Expect = 7.0
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = +1

Query: 10     AASAMVRSEASANLGGVPSKRLKMQYAT 37
              AASA  RS  SA++GG PS    +Q A+
Sbjct: 190759 AASASPRSRGSADVGGAPSSSTDVQSAS 190842


  Database: genome.fa
    Posted date:  Feb 16, 2009  1:41 PM
  Number of letters in database: 56,660,578
  Number of sequences in database:  1185
  
Lambda     K      H
   0.325    0.137    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,320,333
Number of Sequences: 1185
Number of extensions: 119639
Number of successful extensions: 566
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 455
Number of HSP's gapped (non-prelim): 292
length of query: 195
length of database: 18,886,859
effective HSP length: 98
effective length of query: 97
effective length of database: 18,770,729
effective search space: 1820760713
effective search space used: 1820760713
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (27.7 bits)
TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000116_1.0 # Protein # Selenoprotein T (SelT) # Mus
musculus # Complete
         (195 letters)

Database: genome.fa 
           1185 sequences; 56,660,578 total letters

Searching...................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

scaffold_44                                                            68   8e-12

>scaffold_44
          Length = 313712

 Score = 67.8 bits (164), Expect = 8e-12
 Identities = 41/133 (30%), Positives = 70/133 (52%), Gaps = 1/133 (0%)
 Frame = +2

Query: 44     QICVSXGYRRVFEEYMRVISQRYPDIR-IEGENYLPQPIYRHIASFLSVFKLVLIGLIIV 102
              ++C S G +R + E  + +   YP +R +  E Y P  +    A    + ++  + L++ 
Sbjct: 140408 KLCTS*GTQRNYLELRKFLEDAYPGLRSVAAEQYPPPAVGVFAAQAAGMAQVACVALLLG 140587

Query: 103    GKDPFAFFGMQAPSIWQWGQENKVYACMMVFFLSNMIENQCMSTGAFEITLNDVPVWSKL 162
              G+  F  FG   P  +    ENK+ A   V+ ++N +  Q ++TGAFEI +N    +SKL
Sbjct: 140588 GEKVFQLFGAATPGWYHSVAENKMMAFGAVW-MANNVAAQMVATGAFEIHVNGELAFSKL 140764

Query: 163    ESGHLPSMQQLVQ 175
              E+G LPS   +V+
Sbjct: 140765 ETGRLPSAADVVR 140803


  Database: genome.fa
    Posted date:  Feb 16, 2009  1:41 PM
  Number of letters in database: 56,660,578
  Number of sequences in database:  1185
  
Lambda     K      H
   0.326    0.140    0.435 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,342,238
Number of Sequences: 1185
Number of extensions: 102172
Number of successful extensions: 432
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 368
Number of HSP's gapped (non-prelim): 182
length of query: 195
length of database: 18,886,859
effective HSP length: 98
effective length of query: 97
effective length of database: 18,770,729
effective search space: 1820760713
effective search space used: 1820760713
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (27.7 bits)
TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000046_1.0 # Protein # Selenoprotein T (SelT) # Drosophila
melanogaster # Complete
         (198 letters)

Database: genome.fa 
           1185 sequences; 56,660,578 total letters

Searching...................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

scaffold_44                                                            58   8e-09

>scaffold_44
          Length = 313712

 Score = 57.8 bits (138), Expect = 8e-09
 Identities = 35/125 (28%), Positives = 61/125 (48%), Gaps = 1/125 (0%)
 Frame = +2

Query: 49     CYSCGYRKAFEDYVGLLGEKYPQIQ-VNGGNYDPPGLNYYLSKMIFALKXXXXXXXXXXX 107
              C S G ++ + +    L + YP ++ V    Y PP +  + ++     +           
Sbjct: 140414 CTS*GTQRNYLELRKFLEDAYPGLRSVAAEQYPPPAVGVFAAQAAGMAQVACVALLLGGE 140593

Query: 108    XPFTFLGLNTPSWWSHMQANKIYACMMIFFLGNMLEAQLISSGAFEITLNDVPVWSKLQT 167
                F   G  TP W+  +  NK+ A   ++ + N + AQ++++GAFEI +N    +SKL+T
Sbjct: 140594 KVFQLFGAATPGWYHSVAENKMMAFGAVW-MANNVAAQMVATGAFEIHVNGELAFSKLET 140770

Query: 168    GRFPS 172
              GR PS
Sbjct: 140771 GRLPS 140785


  Database: genome.fa
    Posted date:  Feb 16, 2009  1:41 PM
  Number of letters in database: 56,660,578
  Number of sequences in database:  1185
  
Lambda     K      H
   0.324    0.141    0.445 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,195,655
Number of Sequences: 1185
Number of extensions: 109966
Number of successful extensions: 503
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 399
Number of HSP's gapped (non-prelim): 189
length of query: 198
length of database: 18,886,859
effective HSP length: 99
effective length of query: 99
effective length of database: 18,769,544
effective search space: 1858184856
effective search space used: 1858184856
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 60 (27.7 bits)
TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000054_1.0 # Protein # Selenoprotein T (SelT) # Anopheles
gambiae # Complete
         (202 letters)

Database: genome.fa 
           1185 sequences; 56,660,578 total letters

Searching...................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

scaffold_44                                                            52   4e-07

>scaffold_44
          Length = 313712

 Score = 52.4 bits (124), Expect = 4e-07
 Identities = 33/139 (23%), Positives = 62/139 (44%), Gaps = 1/139 (0%)
 Frame = +2

Query: 43     NYGATMTFLYCYSCGYRKAFDDYHNLILEKYPEI-TIRGSNYDPSGVNMXXXXXXXXXXX 101
              N  A +    C S G ++ + +    + + YP + ++    Y P  V +           
Sbjct: 140384 NGDAEVLVKLCTS*GTQRNYLELRKFLEDAYPGLRSVAAEQYPPPAVGVFAAQAAGMAQV 140563

Query: 102    XXXXXXMSNYDIGRYIGNPFAGWWQWCFNNKLYASMMIFFLGNTLEAQLISSGAFEITLN 161
                    +    + +  G    GW+     NK+ A   ++ + N + AQ++++GAFEI +N
Sbjct: 140564 ACVALLLGGEKVFQLFGAATPGWYHSVAENKMMAFGAVW-MANNVAAQMVATGAFEIHVN 140740

Query: 162    DVPVWSKLETGRFPAPQEM 180
                  +SKLETGR P+  ++
Sbjct: 140741 GELAFSKLETGRLPSAADV 140797


  Database: genome.fa
    Posted date:  Feb 16, 2009  1:41 PM
  Number of letters in database: 56,660,578
  Number of sequences in database:  1185
  
Lambda     K      H
   0.323    0.138    0.442 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,839,725
Number of Sequences: 1185
Number of extensions: 110158
Number of successful extensions: 392
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 320
Number of HSP's gapped (non-prelim): 171
length of query: 202
length of database: 18,886,859
effective HSP length: 99
effective length of query: 103
effective length of database: 18,769,544
effective search space: 1933263032
effective search space used: 1933263032
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 60 (27.7 bits)
TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000060_1.0 # Protein # Selenoprotein T1 (SelT1) #
Caenorhabditis elegans # Complete
         (258 letters)

Database: genome.fa 
           1185 sequences; 56,660,578 total letters

Searching...................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

scaffold_44                                                            71   2e-12
scaffold_123                                                           33   0.46 
scaffold_7                                                             32   1.0  
scaffold_13                                                            30   2.3  
scaffold_2                                                             30   3.9  
scaffold_46                                                            29   5.1  

>scaffold_44
          Length = 313712

 Score = 70.9 bits (172), Expect = 2e-12
 Identities = 39/131 (29%), Positives = 70/131 (53%), Gaps = 1/131 (0%)
 Frame = +2

Query: 103    CVSCGYKQAFDQFTTFAKEKYPNM-PIEGANFAPVLWKAYVAQALSFVKMAVLVLVLGGI 161
              C S G ++ + +   F ++ YP +  +    + P     + AQA    ++A + L+LGG 
Sbjct: 140414 CTS*GTQRNYLELRKFLEDAYPGLRSVAAEQYPPPAVGVFAAQAAGMAQVACVALLLGGE 140593

Query: 162    NPFERFGLGYPQILQHAHGNKMSSCMLVFMLGNLVEQSLISTGAFEVYLGNEQIWSKIES 221
                F+ FG   P        NKM +   V+M  N+  Q +++TGAFE+++  E  +SK+E+
Sbjct: 140594 KVFQLFGAATPGWYHSVAENKMMAFGAVWMANNVAAQ-MVATGAFEIHVNGELAFSKLET 140770

Query: 222    GRVPSPQEFMQ 232
              GR+PS  + ++
Sbjct: 140771 GRLPSAADVVR 140803


>scaffold_123
          Length = 17201

 Score = 32.7 bits (73), Expect = 0.46
 Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
 Frame = -2

Query: 29    CDVLRTVSAEEHSHDENHVHEKDDFEAEFGDETDSQSFSQGTEEDHIEV---REQSSFVK 85
             C   + +    H  DE    E+DD + E  +E + +   +  +E+  E     E+++FVK
Sbjct: 17068 CPPSKKLKTNSHEEDEEEDEEEDDDDEEEEEEEEEEEKEEEVKEEEEEEPLDEEENAFVK 16889

Query: 86    PTAVHHAKDL 95
                 H+A  +
Sbjct: 16888 KCIRHYASQI 16859


>scaffold_7
          Length = 2177197

 Score = 31.6 bits (70), Expect = 1.0
 Identities = 27/78 (34%), Positives = 36/78 (46%), Gaps = 16/78 (20%)
 Frame = +3

Query: 37     AEEHSHD-----------ENHVHEKDDFEAEFGD--ETDSQSFSQGTEED--HIEVREQ- 80
              AEEH+ D           + HVHE+D+     GD  E D +  +Q   ED    E RE+ 
Sbjct: 880215 AEEHALDHAVVEAPPRLVDGHVHEEDEVAEREGDEREVDQRDDAQQRREDPERREDRERH 880394

Query: 81     SSFVKPTAVHHAKDLPTL 98
                  +  AVHHA+ L  L
Sbjct: 880395 HDLGERPAVHHARQLRRL 880448


>scaffold_13
          Length = 1338096

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +3

Query: 37     AEEHSHDENHVHEKDDFEAEFGDETDSQSFSQGTEEDHIEVREQS 81
              AE  S DE    + D+ E E GDE + ++  +  EED  E  E++
Sbjct: 394965 AEAESVDEEEEEDIDEEEEEDGDEEEEEAEDEEEEEDGDEEEEEA 395099


>scaffold_2
          Length = 3465789

 Score = 29.6 bits (65), Expect = 3.9
 Identities = 14/25 (56%), Positives = 17/25 (68%)
 Frame = +3

Query: 220    ESGRVPSPQEFMQLIDAQLAVLGKA 244
              E GRVP P+    L+DA LAV+G A
Sbjct: 638892 EEGRVPRPRAVDPLVDALLAVVGHA 638966


>scaffold_46
          Length = 219253

 Score = 29.3 bits (64), Expect = 5.1
 Identities = 14/58 (24%), Positives = 30/58 (51%)
 Frame = -3

Query: 38     EEHSHDENHVHEKDDFEAEFGDETDSQSFSQGTEEDHIEVREQSSFVKPTAVHHAKDL 95
              E+   +E    E+++ E E  +E   +   +  EE+ ++  E+++FVK    H+A  +
Sbjct: 162362 EDDDEEEEEEEEEEEEEEEEEEEVKEEEVKEEEEEEPLD-EEENAFVKKCIRHYASQI 162192


  Database: genome.fa
    Posted date:  Feb 16, 2009  1:41 PM
  Number of letters in database: 56,660,578
  Number of sequences in database:  1185
  
Lambda     K      H
   0.321    0.136    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,521,441
Number of Sequences: 1185
Number of extensions: 143508
Number of successful extensions: 766
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 523
Number of HSP's gapped (non-prelim): 449
length of query: 258
length of database: 18,886,859
effective HSP length: 102
effective length of query: 156
effective length of database: 18,765,989
effective search space: 2927494284
effective search space used: 2927494284
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)
TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000061_1.0 # Protein # Selenoprotein T2 (SelT2) #
Caenorhabditis elegans # Complete
         (216 letters)

Database: genome.fa 
           1185 sequences; 56,660,578 total letters

Searching...................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

scaffold_44                                                            52   7e-07
scaffold_17                                                            28   8.4  

>scaffold_44
          Length = 313712

 Score = 51.6 bits (122), Expect = 7e-07
 Identities = 32/131 (24%), Positives = 65/131 (49%), Gaps = 1/131 (0%)
 Frame = +2

Query: 71     KLTILYCVSCGYKQAFNQFYEFAKEKYPGL-VIEGGNFSPDFWKGCLAQIVGVAKIGLIA 129
              ++ +  C S G ++ + +  +F ++ YPGL  +    + P       AQ  G+A++  +A
Sbjct: 140396 EVLVKLCTS*GTQRNYLELRKFLEDAYPGLRSVAAEQYPPPAVGVFAAQAAGMAQVACVA 140575

Query: 130    IVITGSNPFEYIGFGYPQILQTAHYNRFSYSLLVFMIGNLFESTLSSTGAFEIFLGDKQI 189
              +++ G   F+  G   P    +   N+      V+M  N+  + + +TGAFEI +  +  
Sbjct: 140576 LLLGGEKVFQLFGAATPGWYHSVAENKMMAFGAVWMANNV-AAQMVATGAFEIHVNGELA 140752

Query: 190    WSKISKERVPT 200
              +SK+   R+P+
Sbjct: 140753 FSKLETGRLPS 140785


>scaffold_17
          Length = 902323

 Score = 28.1 bits (61), Expect = 8.4
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = +3

Query: 177    TGAFEIFLGDKQIWSKISK 195
              TG+FE+FLGD  I SK +K
Sbjct: 164886 TGSFEVFLGDALIHSKATK 164942


  Database: genome.fa
    Posted date:  Feb 16, 2009  1:41 PM
  Number of letters in database: 56,660,578
  Number of sequences in database:  1185
  
Lambda     K      H
   0.322    0.139    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,657,922
Number of Sequences: 1185
Number of extensions: 105292
Number of successful extensions: 401
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 306
Number of HSP's gapped (non-prelim): 199
length of query: 216
length of database: 18,886,859
effective HSP length: 100
effective length of query: 116
effective length of database: 18,768,359
effective search space: 2177129644
effective search space used: 2177129644
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)
