TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000016_1.0 # Protein # Selenoprotein K (SelK) # Homo
sapiens # Complete
         (94 letters)

Database: genome.fa 
           1185 sequences; 56,660,578 total letters

Searching...................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

scaffold_506                                                           44   2e-05
scaffold_8                                                             44   2e-05

>scaffold_506
          Length = 6951

 Score = 44.3 bits (103), Expect = 2e-05
 Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 6/62 (9%)
 Frame = +3

Query: 1    MVYI-SNGQVLDSRSQSPWRLSLITDFFWGIAEFVVLFFKTLL-----QQDVKKRRSYGN 54
            MVY+ ++G V++ RS   WRLS++ DF WG+ +F  LF  TL+        ++ +RS G 
Sbjct: 3801 MVYLRADGTVVEKRSM--WRLSIVPDFLWGVVDFFWLFVSTLINPQSEHNSLRPKRSSGG 3974

Query: 55   SS 56
            ++
Sbjct: 3975 AT 3980


>scaffold_8
          Length = 1961717

 Score = 44.3 bits (103), Expect = 2e-05
 Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 6/62 (9%)
 Frame = +3

Query: 1       MVYI-SNGQVLDSRSQSPWRLSLITDFFWGIAEFVVLFFKTLL-----QQDVKKRRSYGN 54
               MVY+ ++G V++ RS   WRLS++ DF WG+ +F  LF  TL+        ++ +RS G 
Sbjct: 1141434 MVYLRADGTVVEKRSM--WRLSIVPDFLWGVVDFFWLFVSTLINPQSEHNSLRPKRSSGG 1141607

Query: 55      SS 56
               ++
Sbjct: 1141608 AT 1141613


  Database: genome.fa
    Posted date:  Feb 16, 2009  1:41 PM
  Number of letters in database: 56,660,578
  Number of sequences in database:  1185
  
Lambda     K      H
   0.325    0.138    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,458,462
Number of Sequences: 1185
Number of extensions: 26876
Number of successful extensions: 143
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 119
Number of HSP's gapped (non-prelim): 34
length of query: 94
length of database: 18,886,859
effective HSP length: 69
effective length of query: 25
effective length of database: 18,805,094
effective search space: 470127350
effective search space used: 470127350
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)
TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000112_1.0 # Protein # Selenoprotein K (SelK) # Mus
musculus # Complete
         (94 letters)

Database: genome.fa 
           1185 sequences; 56,660,578 total letters

Searching...................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

scaffold_506                                                           38   0.002
scaffold_8                                                             38   0.002

>scaffold_506
          Length = 6951

 Score = 38.1 bits (87), Expect = 0.002
 Identities = 18/43 (41%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
 Frame = +3

Query: 1    MVYI-SNGQVLDSRNQSPWRVSFLTDFFWGIAEFVVFFFKTLL 42
            MVY+ ++G V++ R  S WR+S + DF WG+ +F   F  TL+
Sbjct: 3801 MVYLRADGTVVEKR--SMWRLSIVPDFLWGVVDFFWLFVSTLI 3923


>scaffold_8
          Length = 1961717

 Score = 38.1 bits (87), Expect = 0.002
 Identities = 18/43 (41%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
 Frame = +3

Query: 1       MVYI-SNGQVLDSRNQSPWRVSFLTDFFWGIAEFVVFFFKTLL 42
               MVY+ ++G V++ R  S WR+S + DF WG+ +F   F  TL+
Sbjct: 1141434 MVYLRADGTVVEKR--SMWRLSIVPDFLWGVVDFFWLFVSTLI 1141556


  Database: genome.fa
    Posted date:  Feb 16, 2009  1:41 PM
  Number of letters in database: 56,660,578
  Number of sequences in database:  1185
  
Lambda     K      H
   0.332    0.142    0.451 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,350,203
Number of Sequences: 1185
Number of extensions: 9264
Number of successful extensions: 84
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 59
Number of HSP's gapped (non-prelim): 30
length of query: 94
length of database: 18,886,859
effective HSP length: 69
effective length of query: 25
effective length of database: 18,805,094
effective search space: 470127350
effective search space used: 470127350
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 55 (25.8 bits)
TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000044_1.0 # Protein # Selenoprotein K1 (SelK1) #
Drosophila melanogaster # Complete
         (110 letters)

Database: genome.fa 
           1185 sequences; 56,660,578 total letters

Searching...................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

scaffold_14                                                            28   1.8  
scaffold_12                                                            28   1.8  
scaffold_18                                                            28   2.4  
scaffold_8                                                             27   3.1  
scaffold_1182                                                          27   4.0  
scaffold_7                                                             27   4.0  
scaffold_333                                                           26   6.9  
scaffold_57                                                            26   6.9  
scaffold_55                                                            26   6.9  
scaffold_2                                                             26   6.9  

>scaffold_14
          Length = 1107847

 Score = 28.1 bits (61), Expect = 1.8
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 9     RVWEKRPWDWRRIVELFVGIWFAIK 33
             R W +RPW WR+        WFA++
Sbjct: 88037 RSWSRRPWSWRQ-------EWFAVR 87984


>scaffold_12
          Length = 1412611

 Score = 28.1 bits (61), Expect = 1.8
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -1

Query: 9      RVWEKRPWDWRR 20
              R W +RPW WRR
Sbjct: 953344 RAWRRRPWPWRR 953309



 Score = 26.2 bits (56), Expect = 6.9
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = -1

Query: 89      NRRIGRIQPTMSCNMPA 105
               +RRIG I  TM C MPA
Sbjct: 1157578 SRRIGNIYTTMKCAMPA 1157528


>scaffold_18
          Length = 809113

 Score = 27.7 bits (60), Expect = 2.4
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -1

Query: 87     RPNRRIGRIQPTMSCNMPAGG 107
              RP+RR  R +P  SC  P+GG
Sbjct: 748042 RPSRRRRRTRPRTSCRAPSGG 747980


>scaffold_8
          Length = 1961717

 Score = 27.3 bits (59), Expect = 3.1
 Identities = 13/25 (52%), Positives = 13/25 (52%)
 Frame = +1

Query: 86      LRPNRRIGRIQPTMSCNMPAGGGXG 110
               LRP R  GR     S   PAGGG G
Sbjct: 1438777 LRPRRPTGRASRRRSVGPPAGGGAG 1438851



 Score = 27.3 bits (59), Expect = 3.1
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +3

Query: 9       RVWEKRPWDWRR 20
               R W +RPW WRR
Sbjct: 1682145 RPWRRRPWPWRR 1682180


>scaffold_1182
          Length = 2046

 Score = 26.9 bits (58), Expect = 4.0
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 7   NGRVWEKRPWDWRR 20
           +GR W +R W WRR
Sbjct: 858 SGRPWPRRTWSWRR 817


>scaffold_7
          Length = 2177197

 Score = 26.9 bits (58), Expect = 4.0
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -3

Query: 14     RPWDWRRIVELFVGIWFA 31
              RPW+W     L +G WFA
Sbjct: 368549 RPWEWWEQAGLVLGCWFA 368496


>scaffold_333
          Length = 8173

 Score = 26.2 bits (56), Expect = 6.9
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +1

Query: 86   LRPNRRIGRIQPTMSCNMPAGGG 108
            LRP+RR  R +P  SC  P G G
Sbjct: 6373 LRPSRRPRRRRPRGSCTAPRGPG 6441


>scaffold_57
          Length = 163641

 Score = 26.2 bits (56), Expect = 6.9
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +2

Query: 87     RPNRRIGRIQPTMSCNMPAGGGXG 110
              RP+   G  Q TM CN  AG G G
Sbjct: 107942 RPSPSCGLSQRTMGCNGAAGSGDG 108013


>scaffold_55
          Length = 189926

 Score = 26.2 bits (56), Expect = 6.9
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +1

Query: 9     RVWEKRPWDWRR 20
             R W  RPW WRR
Sbjct: 22006 RPWRPRPWPWRR 22041


>scaffold_2
          Length = 3465789

 Score = 26.2 bits (56), Expect = 6.9
 Identities = 12/34 (35%), Positives = 15/34 (44%)
 Frame = -2

Query: 11      WEKRPWDWRRIVELFVGIWFAIKQLFLTFLAPFT 44
               WEK P+ WRR          A    FLT  +P +
Sbjct: 1894979 WEKEPFSWRRTTRSICAWTMARTLRFLTAPSPLS 1894878


  Database: genome.fa
    Posted date:  Feb 16, 2009  1:41 PM
  Number of letters in database: 56,660,578
  Number of sequences in database:  1185
  
Lambda     K      H
   0.328    0.144    0.508 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,267,131
Number of Sequences: 1185
Number of extensions: 69816
Number of successful extensions: 1060
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 593
Number of HSP's gapped (non-prelim): 705
length of query: 110
length of database: 18,886,859
effective HSP length: 85
effective length of query: 25
effective length of database: 18,786,134
effective search space: 469653350
effective search space used: 469653350
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)
TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000045_1.0 # Protein # Selenoprotein K2 (SelK2) #
Drosophila melanogaster # Complete
         (118 letters)

Database: genome.fa 
           1185 sequences; 56,660,578 total letters

Searching...................................................done

 ***** No hits found ******

  Database: genome.fa
    Posted date:  Feb 16, 2009  1:41 PM
  Number of letters in database: 56,660,578
  Number of sequences in database:  1185
  
Lambda     K      H
   0.328    0.140    0.498 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,481,116
Number of Sequences: 1185
Number of extensions: 41109
Number of successful extensions: 439
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 329
Number of HSP's gapped (non-prelim): 213
length of query: 118
length of database: 18,886,859
effective HSP length: 90
effective length of query: 28
effective length of database: 18,780,209
effective search space: 525845852
effective search space used: 525845852
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)
TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000053_1.0 # Protein # Selenoprotein K1 (SelK1) #
Anopheles gambiae # Complete
         (96 letters)

Database: genome.fa 
           1185 sequences; 56,660,578 total letters

Searching...................................................done

 ***** No hits found ******

  Database: genome.fa
    Posted date:  Feb 16, 2009  1:41 PM
  Number of letters in database: 56,660,578
  Number of sequences in database:  1185
  
Lambda     K      H
   0.332    0.146    0.468 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,553,060
Number of Sequences: 1185
Number of extensions: 6433
Number of successful extensions: 48
Number of sequences better than 10.0: 0
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 43
Number of HSP's gapped (non-prelim): 8
length of query: 96
length of database: 18,886,859
effective HSP length: 71
effective length of query: 25
effective length of database: 18,802,724
effective search space: 470068100
effective search space used: 470068100
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 55 (25.8 bits)
TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000058_1.0 # Protein # Selenoprotein K (SelK) #
Caenorhabditis elegans # Complete
         (110 letters)

Database: genome.fa 
           1185 sequences; 56,660,578 total letters

Searching...................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

scaffold_1                                                             26   9.0  

>scaffold_1
          Length = 3520325

 Score = 25.8 bits (55), Expect = 9.0
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +3

Query: 5       DKDGNVLEKKQKGIVEMIV 23
               DK GNV+EKK+K   +M++
Sbjct: 2725659 DKRGNVIEKKKKKAPKMVI 2725715


  Database: genome.fa
    Posted date:  Feb 16, 2009  1:41 PM
  Number of letters in database: 56,660,578
  Number of sequences in database:  1185
  
Lambda     K      H
   0.321    0.139    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,090,096
Number of Sequences: 1185
Number of extensions: 19212
Number of successful extensions: 100
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 85
Number of HSP's gapped (non-prelim): 22
length of query: 110
length of database: 18,886,859
effective HSP length: 85
effective length of query: 25
effective length of database: 18,786,134
effective search space: 469653350
effective search space used: 469653350
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
