TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= EhSep2_emiliania_huxley; gi|182639182|sp|Q50KB1.2|SEP2_EMIHX
RecName: Full=Protein disulfide-isomerase-like protein EhSep2; Flags:
Precursor # QXERY
         (223 letters)

Database: genome.fa 
           1185 sequences; 56,660,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

scaffold_10                                                           178   4e-45
scaffold_9                                                            145   3e-35
scaffold_6                                                             79   4e-15
scaffold_5                                                             70   2e-12
scaffold_12                                                            46   2e-11
scaffold_18                                                            65   7e-11
scaffold_24                                                            62   7e-10
scaffold_23                                                            58   9e-09
scaffold_8                                                             55   8e-08
scaffold_4                                                             53   3e-07
scaffold_30                                                            52   6e-07
scaffold_801                                                           52   7e-07
scaffold_13                                                            52   7e-07
scaffold_118                                                           52   8e-07
scaffold_3                                                             51   9e-07
scaffold_17                                                            47   2e-05
scaffold_1                                                             45   8e-05
scaffold_31                                                            42   8e-04
scaffold_14                                                            39   0.005
scaffold_28                                                            37   0.014
scaffold_2                                                             37   0.022
scaffold_20                                                            34   0.15 
scaffold_11                                                            34   0.18 
scaffold_228                                                           30   3.3  

>scaffold_10
          Length = 1654512

 Score =  178 bits (452), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 96/176 (54%), Positives = 126/176 (71%), Gaps = 1/176 (0%)
 Frame = +3

Query: 20     IELTPDNFDELVLKSGKAAFIKFLAPWXGHCKKMKPDWDSLASTFEDSKKVLIADVDCTT 79
              +ELT D FDE VL SGK+AF+KFLAPW GHCK MKP WD+L+  +E SK VL+ADVDCT 
Sbjct: 472947 LELTGDTFDEAVLSSGKSAFVKFLAPW*GHCKAMKPAWDALSQDYEGSKTVLVADVDCTA 473126

Query: 80     GGKPLCEKYGVRGYPTIKYFNPPDEEGEDYKGGRSLDELKKFAENELGPGCSVDLMDNCS 139
               GK LC ++ V G+PTIKYFNPP+  GEDY GGRSLD+L+ FAE+EL   CS     +CS
Sbjct: 473127 AGKSLCARFKVSGFPTIKYFNPPNHVGEDYDGGRSLDQLRAFAESELKIACSPTSKASCS 473306

Query: 140    EEQKGKLKEYIDMAPEKRT-EMLETLKKELADAESTHEALLKELQATYKESMDKLE 194
              +E+  +L++ + +    RT E+++  +   ADAE  H+A L+ELQA Y E+ + LE
Sbjct: 473307 KEELAQLEKDLAIPAAARTAELVKIYEAMDADAEK-HDAYLEELQARYDEAEEALE 473471



 Score = 28.5 bits (62), Expect = 6.5,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
 Frame = -3

Query: 40      IKFLAPWXGHCKKMKPDWDSLASTFEDSKKVLIADVDCTT-GGKPLCEKYGVRGYPTIKY 98
               I F A W   CK   P +D+ A+    +   L+  VD      + LC+K+GV   PT+  
Sbjct: 1261762 ILFTASW*PPCKTFGPKYDARAA----TAAALLCKVDVENPETQSLCQKHGVSCMPTVVV 1261595

Query: 99      FNPPDEEGE 107
                    E G+
Sbjct: 1261594 IKDGKEAGK 1261568


>scaffold_9
          Length = 1602328

 Score =  145 bits (367), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 81/182 (44%), Positives = 113/182 (62%), Gaps = 4/182 (2%)
 Frame = -1

Query: 21     ELTPDNFDELVLKSGKAAFIKFLAPWXGHCKKMKPDWDSLASTFEDSKKVLIADVDCTTG 80
              ELTP+ +D+ V   GK  F+KFLAPW GHCKKMKP WD+L + ++D    L+ADVDCT  
Sbjct: 912142 ELTPETWDDAV--DGKTIFVKFLAPW*GHCKKMKPAWDALMADYKDHPTKLVADVDCTAA 911969

Query: 81     GKPLCEKYGVRGYPTIKYFNPPDEEGEDYKGGRSLDELKKFAENELGPGCSVDLMDNCSE 140
              GKPLC+  GV+G+PTIKY +P D   + Y+GGR    LK FAE +L   CSV   D CSE
Sbjct: 911968 GKPLCDSNGVKGFPTIKYGDPADL--QSYEGGRDEKALKAFAETKLVAMCSVKNQDLCSE 911795

Query: 141    EQKGKLKEYIDMAPEKRTEMLETLKKELADAESTHEALLKELQATY----KESMDKLEKL 196
              E+K ++ +++ M        +E  + EL + E+  +  ++ LQ  Y    KE  +K+  L
Sbjct: 911794 EKKAEIAKFMAMEVGDLNTKIEEQEAELKNIEADFKKSVEGLQKLYEGYTKEKEEKMAAL 911615

Query: 197    KE 198
              K+
Sbjct: 911614 KD 911609



 Score =  111 bits (277), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 68/153 (44%), Positives = 86/153 (56%), Gaps = 7/153 (4%)
 Frame = -1

Query: 20     IELTPDNFDELVLKSGKAAFIKFLAPWXGHCKKMKPDWDSLASTFEDSKKVLIADVDCTT 79
              +EL  DNF   V +SGK AF+KFLAPW GHCK MKP WDSL   ++    VLI DVDCT 
Sbjct: 305266 MELNADNFKTEVFESGKNAFVKFLAPW*GHCKSMKPAWDSLMKEYDGHPSVLIGDVDCTV 305087

Query: 80     GGKPLCEKYGVRGYPTIKYF-NPPDEEGED-YKGGRSLDELKKFAENELGPGCSVDLMDN 137
                  LC + GV GYPTIKY+ +  D  G   Y+GGR L  L+K  E+ + P C     +N
Sbjct: 305086 HND-LCSEAGVSGYPTIKYWTDGADMAGASPYQGGRDLAALQKHVEDNMLPKCDAKDPEN 304910

Query: 138    --CSEEQ---KGKLKEYIDMAPEKRTEMLETLK 165
                C +++     K+ E    A  K    LE +K
Sbjct: 304909 SGCDDQEIAYVAKMTEKGADAIAKEATRLEGMK 304811



 Score = 30.4 bits (67), Expect = 1.9,   Method: Composition-based stats.
 Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 6/41 (14%)
 Frame = -3

Query: 70      VLIADV--DCTTG-GKPLCEKYGVRGYPTIKYFNP---PDE 104
               V+ ADV  +C  G G  LCE+    GY    Y+NP   PDE
Sbjct: 1305746 VVCADVGYECAEGYGNTLCERVSSPGYYKFGYYNPEACPDE 1305624


>scaffold_6
          Length = 2755913

 Score = 79.3 bits (194), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 39/87 (44%), Positives = 55/87 (63%)
 Frame = +3

Query: 32     LKSGKAAFIKFLAPWXGHCKKMKPDWDSLASTFEDSKKVLIADVDCTTGGKPLCEKYGVR 91
              L+ G+  F+KF APW GHCKK++P W  LA+  +    VL+A VD T   + L + YGV+
Sbjct: 879678 LRGGRRCFVKFYAPWCGHCKKLEPLWADLAA--QAGADVLVAKVDATQHPR-LAKTYGVK 879848

Query: 92     GYPTIKYFNPPDEEGEDYKGGRSLDEL 118
              GYPT+ +      + + Y+GGR LDEL
Sbjct: 879849 GYPTLVFL--AGHQMQTYRGGRKLDEL 879923



 Score = 40.8 bits (94), Expect = 0.001,   Method: Composition-based stats.
 Identities = 44/183 (24%), Positives = 82/183 (44%), Gaps = 5/183 (2%)
 Frame = +3

Query: 21     ELTPDNFDELVL--KSGKAAFIKFLAPWXGHCKKMKPDWDSLASTFEDSKKVLIADVDCT 78
              +L PDN+  +    K+   A I+F+     + + +   W  L+   +   ++LI  V C 
Sbjct: 365202 DLNPDNYVPITSHNKAILKAVIRFMVDGDEN-EVLDNTWRKLSREMKKKWQLLIGTVWCG 365378

Query: 79     TGGKPLCEKYGVRGYPTIKYFNPPDEE--GEDYKGGRSLDELKKFAENELGPGCSVDLMD 136
                G+P+CE  G+ G  TI + +P D +   E ++G      ++   + E+ P C+ +  +
Sbjct: 365379 GKGQPICEYMGITG-TTIAWGDPWDLKPLPERFEGRAGYKYVRALIDEEIQPFCATEHEE 365555

Query: 137    NCSEEQKGKLKEYIDMAPEKRTEMLETLKK-ELADAESTHEALLKELQATYKESMDKLEK 195
               CS+E    + EY  +   K  E L+ L   +  D +   +    E Q    + + K E 
Sbjct: 365556 WCSDE----MLEYKKVLEGKSDEELDKLIAFQTTDVQLMSKVYNSEYQGKQSDLLRKEEA 365723

Query: 196    LKE 198
              L +
Sbjct: 365724 LGQ 365732


>scaffold_5
          Length = 3000003

 Score = 70.1 bits (170), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 51/152 (33%), Positives = 72/152 (47%)
 Frame = -2

Query: 44      APWXGHCKKMKPDWDSLASTFEDSKKVLIADVDCTTGGKPLCEKYGVRGYPTIKYFNPPD 103
               AP  G  K + P+W SL   F      LIA VDC   G  LCEKY V   PT+  F   D
Sbjct: 2238557 APRAG--KVLDPNWGSLYKEFAGDDDKLIAQVDCQHDGASLCEKYQVESLPTL-MFGAAD 2238387

Query: 104     EEGEDYKGGRSLDELKKFAENELGPGCSVDLMDNCSEEQKGKLKEYIDMAPEKRTEMLET 163
               E  + Y+ GRS D LK F    +   CS    + CS EQ+  L  Y+ M  E+     E 
Sbjct: 2238386 EL-QVYEDGRSWDSLKGFVTYRMKKQCSPAHKEYCSTEQEINLARYVTMDEEELEIATEK 2238210

Query: 164     LKKELADAESTHEALLKELQATYKESMDKLEK 195
               +++++ +  + +   +  LQ  Y  ++   EK
Sbjct: 2238209 IEEKMHNIGADYGGKMWTLQNQYDTAIRVKEK 2238114



 Score = 52.0 bits (123), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 45/163 (27%), Positives = 76/163 (46%), Gaps = 8/163 (4%)
 Frame = -2

Query: 27     FDELVLKSGKAAFIKFLAPWXGHCKKMKPDWDSLASTFEDSKKVLIADVDCTT---GGKP 83
              +DELV  +GK   ++ LA         +  W +L+  F  S +V +  + C      G+ 
Sbjct: 342419 YDELV--AGKGVLLQ-LAVHDQAANDTRAKWRALSDHFRASSEVFVGRLFCDDVEHDGEA 342249

Query: 84     LCEKY----GVRGYPTIKYFNPPDEEGEDYKGGRSLDELKKFAENELGPGCSVDLMDNCS 139
              LC +      +  +P++ Y +P   E  +Y G ++LD L+   E+   P CS    D C 
Sbjct: 342248 LCGELINGRLLSAFPSVFYGDP--YELSEYAGAKTLDALRALGESVRAP-CSPARRDRCD 342078

Query: 140    EEQKGKLKEYIDMAPEKRTEMLETLK-KELADAESTHEALLKE 181
              +  + KL  Y  MAP    E+L T+    LA  ++  +AL ++
Sbjct: 342077 DAARRKLDAYERMAPADLDELLATVGVAHLARVDAAEDALTRQ 341949



 Score = 28.5 bits (62), Expect = 6.1,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 29/60 (48%)
 Frame = +1

Query: 40      IKFLAPWXGHCKKMKPDWDSLASTFEDSKKVLIADVDCTTGGKPLCEKYGVRGYPTIKYF 99
               + F   W G CK M+P  ++++  + D+    +   D +     L ++ GVR  P+  ++
Sbjct: 2562067 VDFATTWCGPCKVMEPKMNAMSEEYTDAIFYKVIG-DSSAEASSLMKREGVRAVPSFHFW 2562243


>scaffold_12
          Length = 1412611

 Score = 46.2 bits (108), Expect(2) = 2e-11,   Method: Composition-based stats.
 Identities = 17/43 (39%), Positives = 26/43 (60%)
 Frame = -1

Query: 23     TPDNFDELVLKSGKAAFIKFLAPWXGHCKKMKPDWDSLASTFE 65
              + D FD +V   G+ AF+KF APW  HC+++   W+ LA   +
Sbjct: 769972 SADAFDSVVRFGGRNAFVKFYAPWCKHCQRLALPWERLAKQLQ 769844



 Score = 40.4 bits (93), Expect(2) = 2e-11,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
 Frame = -3

Query: 75     VDCTT-GGKPLCEKYGVRGYPTIKYFNPPDE-EGEDYKGGRSLDELKKFAENELGPGCSV 132
              VDC   G + LC  YGVR  PT+K F+P     G  Y G  + + +  +A+  L P C  
Sbjct: 769775 VDCAAEGSRDLCAYYGVRQLPTLKAFSPRAPLNGSLYDGALTYEAVAAYAKEALEPACDD 769596

Query: 133    D 133
              D
Sbjct: 769595 D 769593



 Score = 38.9 bits (89), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/42 (38%), Positives = 26/42 (61%)
 Frame = -3

Query: 35      GKAAFIKFLAPWXGHCKKMKPDWDSLASTFEDSKKVLIADVD 76
               G+A  + F APW   C+K+ P +  LA+TF+++   +  DVD
Sbjct: 1203959 GRALVVDFTAPWCKPCQKIYPFFKRLAATFDEAATFVKVDVD 1203834


>scaffold_18
          Length = 809113

 Score = 65.1 bits (157), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 38/100 (38%), Positives = 52/100 (52%)
 Frame = -1

Query: 22     LTPDNFDELVLKSGKAAFIKFLAPWXGHCKKMKPDWDSLASTFEDSKKVLIADVDCTTGG 81
              LT DNF++    +GK A ++F APW GHC+++KP +  L   F     V+I  +D T   
Sbjct: 391861 LTTDNFEDET--AGKDAMLEFYAPWCGHCQQLKPTYKQLGEKFAAVDSVVIGAMDATANE 391688

Query: 82     KPLCEKYGVRGYPTIKYFNPPDEEGEDYKGGRSLDELKKF 121
               P      V+GYPT+  F   D   E Y G R LD +  F
Sbjct: 391687 PPKESGIEVQGYPTL-IFKKADGSTEPYDGDRDLDSMVDF 391571


>scaffold_24
          Length = 564861

 Score = 61.6 bits (148), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 40/145 (27%), Positives = 67/145 (46%), Gaps = 8/145 (5%)
 Frame = -2

Query: 26     NFDELVLKSGKAAFIKFLAPWXGHCKKMKPDWDSLASTFE-------DSKKVLIADVDCT 78
              NFD + L      F+ FLAPW   C++++P W++ A   E       +S  V I  VDC 
Sbjct: 213680 NFD-MYLSENPYVFVNFLAPWCIWCQRLEPTWEATAEEVERLNENENESIDVDIVKVDC- 213507

Query: 79     TGGKPLCEKYGVRGYPTIKYFNPPDEEGEDYKGGRSLDELKKFAENELGPGCSVDLMDNC 138
                 + LC    ++ +PT+++F    + G DYK  R++  +  F                 
Sbjct: 213506 VANRNLCGTQRIQAFPTLRFFKDSQQYGIDYKQDRTVSAMIDFL---------------- 213375

Query: 139    SEEQKGKLKEYI-DMAPEKRTEMLE 162
                +QK +L++ + D  P ++  MLE
Sbjct: 213374 --KQKVELEKTMEDWHPRRKQRMLE 213306


>scaffold_23
          Length = 674037

 Score = 58.2 bits (139), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 34/108 (31%), Positives = 50/108 (46%), Gaps = 1/108 (0%)
 Frame = -3

Query: 25     DNFDELVLKSGKAAFIKFLAPWXGHCKKMKPDWDSLASTFEDSKKVLIADVDCTTGGKPL 84
              D F +L     +   + F APW GHCK++ P  D   +   D+  V +A +D  T  K L
Sbjct: 608995 DAFLQLAADEEQWVLLDFFAPWCGHCKRLNPVLDDFVA---DTPGVRVAKID-ATAEKAL 608828

Query: 85     CEKYGVRGYPTIKYFNPPDEEG-EDYKGGRSLDELKKFAENELGPGCS 131
               E + V GYPT+++      +   DYKG R    L +      GP  +
Sbjct: 608827 AEAHDVDGYPTLRFRRAGSSDAFRDYKGARDAVGLAQLDARLRGPAVT 608684



 Score = 57.4 bits (137), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 34/108 (31%), Positives = 50/108 (46%), Gaps = 1/108 (0%)
 Frame = -3

Query: 25     DNFDELVLKSGKAAFIKFLAPWXGHCKKMKPDWDSLASTFEDSKKVLIADVDCTTGGKPL 84
              D F +L     +   + F APW GHCK++ P  D   +   D+  V +A +D  T  K L
Sbjct: 606541 DAFLQLAADEEQWVLLDFFAPWCGHCKRLNPVLDDFVA---DTPGVRVAKID-ATAEKAL 606374

Query: 85     CEKYGVRGYPTIKYFNPPDEEG-EDYKGGRSLDELKKFAENELGPGCS 131
               E + V GYPT+++      +   DYKG R    L +      GP  +
Sbjct: 606373 AEAHDVDGYPTLRFRRAGASDAFRDYKGARDAVGLAQLDARLRGPAVT 606230



 Score = 51.6 bits (122), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 48/90 (53%), Gaps = 2/90 (2%)
 Frame = -2

Query: 39     FIKFLAPWXGHCKKMKPDWDSLASTFEDSK-KVLIADVDCTTGGKPLCEKYGVRGYPTIK 97
              F+ F APW  +C+ ++  W++LA   E     V +A VDC    +  C    V+ +PT++
Sbjct: 167636 FVDFYAPWCLYCQSLRSTWEALAEELEKRDLGVAVAAVDCVD-NEAFCHDMKVQTFPTLR 167460

Query: 98     YFNPPDEEGE-DYKGGRSLDELKKFAENEL 126
              +++  ++  E +Y+  R++  L  F   +L
Sbjct: 167459 FYHHGEQVNEGEYRFDRTVAALTDFVTRKL 167370


>scaffold_8
          Length = 1961717

 Score = 54.7 bits (130), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 49/179 (27%), Positives = 86/179 (48%), Gaps = 2/179 (1%)
 Frame = -3

Query: 21     ELTPDNFDELVLKSGKAAFIKFLAPWXGHCKKMKPDWDSLASTFEDSKKVLIADVDCTTG 80
              +L P N+  +   +GK A I+FL     +  K+   W  L+    ++ +VL+  V+C   
Sbjct: 380097 DLHPQNY--VKHTAGKMAIIRFLGEKEKN-DKLDASWKLLSKELRNNTQVLVGTVNCGAV 379927

Query: 81     GKPLCEKYGVRGYPTIKYFNPPDEEGEDYKGGRSLDELKKFAENELGPGCSVDLMDNCSE 140
              GKP+CE  G+    T+ + +P +   + Y GG S DEL       +   C+VD    C++
Sbjct: 379926 GKPICEYMGIES-TTVAWGDPWNL--QPYDGGASYDELYGLVRRRM-TFCAVDETQVCTD 379759

Query: 141    EQKGKLKEYIDMAPEKRTEML--ETLKKELADAESTHEALLKELQATYKESMDKLEKLK 197
              E+  KL E   ++ E+    +  +T K  LA      +    +L+   KE +D  ++L+
Sbjct: 379758 EELAKLAELGALSSEELDAAIADQTQKDWLAAFLIDKDYAPHKLEKREKEMLDDEKELQ 379582



 Score = 32.7 bits (73), Expect = 0.38,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 5/84 (5%)
 Frame = -1

Query: 25      DNFDELVLKSGKAAFIKFLAPWXGHCKKMKPDWDSL---ASTFEDSKKVLIADVDCTTGG 81
               D F  +V  S +   ++F +   G+C++ +P W  L   AS  E ++  +  D     GG
Sbjct: 1629593 DEFRAVVGASRRVFLVEFFSGMCGYCQEFEPTWLELAAQASRLEPARVNIDGD-----GG 1629429

Query: 82      KPLCEKYGV--RGYPTIKYFNPPD 103
                 L    G+   G P +  FN  D
Sbjct: 1629428 AALAADLGILDEGIPCVVVFNRGD 1629357


>scaffold_4
          Length = 3024044

 Score = 52.8 bits (125), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/102 (32%), Positives = 50/102 (49%)
 Frame = +1

Query: 20      IELTPDNFDELVLKSGKAAFIKFLAPWXGHCKKMKPDWDSLASTFEDSKKVLIADVDCTT 79
               +E+T  NFD    K      + F APW GHCK+++P    LAS  +   +V   D    T
Sbjct: 2102140 VEVTTRNFDAETSKPN--LLLVFYAPWCGHCKRLEPVLQQLASADDPGYRVGRCD---GT 2102304

Query: 80      GGKPLCEKYGVRGYPTIKYFNPPDEEGEDYKGGRSLDELKKF 121
                 + L +++GVRG+P++ Y      E   Y G R   ++  F
Sbjct: 2102305 EHRVLTQRFGVRGFPSLFYVR-SRAEVIPYDGARGAKDIDHF 2102427



 Score = 37.4 bits (85), Expect = 0.016,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
 Frame = -1

Query: 40      IKFLAPWXGHCKKMKPDWDSL----ASTFEDSKKVLIADVDCTTGGKPLCEKYGVRGYPT 95
               + F A W  +C ++ P W  L             V +  VD     K L +++G+RG+PT
Sbjct: 1825361 VNFYASWCVYCTRLAPAWRELAAAAGPAAARGGAVRVGAVDVMANPK-LAKRFGIRGFPT 1825185

Query: 96      IKYF 99
               I  F
Sbjct: 1825184 IVLF 1825173


>scaffold_30
          Length = 484759

 Score = 52.0 bits (123), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 37/154 (24%), Positives = 69/154 (44%), Gaps = 13/154 (8%)
 Frame = -2

Query: 22     LTPDNFDELVLKSGKAAFIKFLAPWXGHCKKMKPDWDSLASTFED-SKKVLIADVDCTT- 79
              L   NF+   L      F+ F APW   C++++P W+++A   E  +++V   D   T+ 
Sbjct: 364902 LDETNFESF-LSENPYVFVNFFAPWCIWCQRLEPTWEAMAEEVERLNREVEQVDERSTSI 364726

Query: 80     ----------GGKPLCEKYGVRGYPTIKYFNPPDEEGEDYKGGRSLDELKKFAENELGPG 129
                          + LC    ++ +PT+++F    + G DYK  R++  +           
Sbjct: 364725 DVDVVKVDCVANRNLCGTQRIQAFPTLRFFKDAQQYGIDYKQDRTVAAM----------- 364579

Query: 130    CSVDLMDNCSEEQKGKLKEYI-DMAPEKRTEMLE 162
                VD +     +QK +L++ + D  P ++  MLE
Sbjct: 364578 --VDFL-----KQKVELEKTMEDWHPRRKQRMLE 364498


>scaffold_801
          Length = 4591

 Score = 51.6 bits (122), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 48/90 (53%), Gaps = 2/90 (2%)
 Frame = +3

Query: 39   FIKFLAPWXGHCKKMKPDWDSLASTFEDSK-KVLIADVDCTTGGKPLCEKYGVRGYPTIK 97
            F+ F APW  +C+ ++  W++LA   E     V +A VDC    +  C    V+ +PT++
Sbjct: 2856 FVDFYAPWCLYCQSLRSTWEALAEELEKRDLGVAVAAVDCVD-NEAFCHDMKVQTFPTLR 3032

Query: 98   YFNPPDEEGE-DYKGGRSLDELKKFAENEL 126
            +++  ++  E +Y+  R++  L  F   +L
Sbjct: 3033 FYHHGEQVNEGEYRFDRTVAALTDFVTRKL 3122


>scaffold_13
          Length = 1338096

 Score = 51.6 bits (122), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
 Frame = +1

Query: 39      FIKFLAPWXGHCKKMKPDWDSLASTFEDSKKVLIADVDCTTGGKPLCEKYG--VRGYPTI 96
               F+ F APW GHC  + P W++LA  +     V++A +D T   K   +  G  V G+PTI
Sbjct: 1288834 FVLFHAPWCGHCASLAPTWEALARLYAPVDSVVVARMDAT---KNEIDDPGVLVDGFPTI 1289004

Query: 97      KYFNPPDEEGED--YKGGRSLDELKKF 121
                Y  P D + +   Y+    LD   +F
Sbjct: 1289005 -YLFPADRDAKPALYEHAHDLDSFSRF 1289082



 Score = 49.3 bits (116), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 30/91 (32%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
 Frame = +1

Query: 42      FLAPWXGHCKKMKPDWDSLASTFEDSK-KVLIADVDCTTGGKPLCEKYGVRGYPTIKYFN 100
               F APW  HC++ +P +   AS   D+   VL   +D     + + + YGVRGYP +K F 
Sbjct: 1287415 FGAPWCAHCRRFEPQFLEAASAVRDAGLDVLFGSLDAAE-DRAVADAYGVRGYPHVKCFR 1287591

Query: 101     PPDEEGEDYKGGRSLDELKKFAENELGPGCS 131
                    G DY+G      L ++A+    P  S
Sbjct: 1287592 FGRFVG-DYEGPNEAAPLARWAKRRARPAVS 1287681



 Score = 28.1 bits (61), Expect = 9.1,   Method: Composition-based stats.
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 31     VLKSGKAAFIKFLAPWXGHCKK 52
              V+    AA + F APW  HCK+
Sbjct: 684413 VVGGAPAAVVMFYAPWCQHCKR 684348


>scaffold_118
          Length = 17462

 Score = 51.6 bits (122), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 29/60 (48%)
 Frame = +2

Query: 40   IKFLAPWXGHCKKMKPDWDSLASTFEDSKKVLIADVDCTTGGKPLCEKYGVRGYPTIKYF 99
            + F APW GHC+   P +    +    S   L A     T  K  C ++GVR YPT+K F
Sbjct: 2891 VAFYAPWCGHCQHYAPSFRQFGAALAASGDALRAGAVSCTAEKKACSEFGVRSYPTVKAF 3070


>scaffold_3
          Length = 3001400

 Score = 51.2 bits (121), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 29/60 (48%)
 Frame = -2

Query: 40      IKFLAPWXGHCKKMKPDWDSLASTFEDSKKVLIADVDCTTGGKPLCEKYGVRGYPTIKYF 99
               + F APW GHC+   P +    +    S   L A     T  K  C ++GVR YPT+K F
Sbjct: 1458421 VAFYAPWCGHCQHYAPSFRQFGAALAASGDALRAGAVSCTAEKKACSEFGVRSYPTVKAF 1458242



 Score = 31.2 bits (69), Expect = 1.2,   Method: Composition-based stats.
 Identities = 30/112 (26%), Positives = 46/112 (41%), Gaps = 3/112 (2%)
 Frame = +1

Query: 21      ELTPDNFD-ELVLKSGKAAFIKFLAPWXGHCKKMKPDWDSLASTFEDSKKVLIADVDCTT 79
               ELT + F+ EL         +   A W G C+ M P     A     + +V   D D   
Sbjct: 2637871 ELTAEQFELELAGDPATPILLDVYAKWCGPCQMMAPQLAKAAEELGAAARVAKVDSDLY- 2638047

Query: 80      GGKPLCEKYGVRGYPTIKYFNPPDEEGEDYKGGRSLDELKKFAEN--ELGPG 129
                 + L     V G PT+  F    +E +  +G    D+L  FA++  ++G G
Sbjct: 2638048 --EALASTLNVGGLPTVILFK-GGKEVDRVEGALMKDQLVAFAKSAADVGAG 2638194


>scaffold_17
          Length = 902323

 Score = 47.0 bits (110), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 49/186 (26%), Positives = 85/186 (45%), Gaps = 22/186 (11%)
 Frame = +1

Query: 21     ELTPDNFDELV---LKSGKAAFIKFLAPWX-GHCKKMKPDWDSLASTFEDSKKVLIADVD 76
              +LT + F++ V   +  GK A ++++A    G   K  P W +    F+D+K V+  DV+
Sbjct: 856810 KLTAETFNDFVEGAIADGKTAMVRWIASEG*G**VKQTPGWVAALGAFKDNKDVVFGDVN 856989

Query: 77     CT-------TGGKPLCEKYGVRGYPTIKYFN--------PPDEEGEDY--KGGRSLDELK 119
               +       + G P     G  G+PTI+YFN        P +++ E    +  + +D + 
Sbjct: 856990 LSEAPVAEASDGTPF--NPGAGGWPTIRYFNADTGVGGAPYEKKTEKAMCEELKDIDHMF 857163

Query: 120    KFAENELG-PGCSVDLMDNCSEEQKGKLKEYIDMAPEKRTEMLETLKKELADAESTHEAL 178
               + E   G   C V+    CS++QK  + ++ D              K LAD E+ +E L
Sbjct: 857164 AYVETAAGTSACDVEDFVGCSDKQKDYIGKWKD-------------GKSLADYEAQNERL 857304

Query: 179    LKELQA 184
               K L++
Sbjct: 857305 AKMLKS 857322


>scaffold_1
          Length = 3520325

 Score = 45.1 bits (105), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 4/92 (4%)
 Frame = -1

Query: 39      FIKFLAPWXGHCKKMKPDWDSLASTFEDSKKVLIA-DVDCTTGGKPLCEKYGVRGYPTIK 97
               F+ F APW GHCK++ P     A   + S   + A DV+  +G + +     +RG+P++K
Sbjct: 3404474 FVMFYAPWCGHCKQLAPKMKVAAKKLKGSGVGIGAVDVEPNSGIQAMFPD--IRGFPSLK 3404301

Query: 98      YFNPPDEEGE---DYKGGRSLDELKKFAENEL 126
               Y        +   DY G R  D+++++ + + 
Sbjct: 3404300 YVRSGKNSAKTAIDYNGPREADDIERWTKEQF 3404205



 Score = 37.7 bits (86), Expect = 0.010,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 5/89 (5%)
 Frame = -2

Query: 35      GKAAFIKFLAPWXGHCKKMKPDWDSLASTFEDS-----KKVLIADVDCTTGGKPLCEKYG 89
               G    ++F APW G CK   P + + A           + V    V+C    K   + YG
Sbjct: 1205806 GTVWVVEFYAPWCGACKAFAPTYKAAARRGAAREGAAWEAVEFGAVNCARNAKICNDWYG 1205627

Query: 90      VRGYPTIKYFNPPDEEGEDYKGGRSLDEL 118
               +R YPT+   N       ++ G ++ D L
Sbjct: 1205626 IRAYPTVLALNEVLGTRTEFFGDKTEDAL 1205540



 Score = 35.8 bits (81), Expect = 0.048,   Method: Composition-based stats.
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +2

Query: 22      LTPDNFDELVLKSGKAAFIKFLAPWXGHCKKMKPDW 57
               L P NFD  V ++     ++F APW GHC+++ P +
Sbjct: 1408808 LDPYNFDAFV-EAAPLTIVEFYAPWCGHCQQVAPRY 1408912


>scaffold_31
          Length = 470201

 Score = 41.6 bits (96), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 41/79 (51%)
 Frame = -1

Query: 21     ELTPDNFDELVLKSGKAAFIKFLAPWXGHCKKMKPDWDSLASTFEDSKKVLIADVDCTTG 80
              EL  + FD +V  S     ++F  P  GHC+ M+P++   A   E    V++A VD    
Sbjct: 395894 ELNDETFDSVVDGSAHV-LVEFYKPDCGHCQTMEPEFYKTAEALEFESDVILARVDTEES 395718

Query: 81     GKPLCEKYGVRGYPTIKYF 99
               K + +++ + G+P  ++F
Sbjct: 395717 PK-VGKRFAIDGHPIFRWF 395664


>scaffold_14
          Length = 1107847

 Score = 38.9 bits (89), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 38/80 (47%)
 Frame = -1

Query: 42     FLAPWXGHCKKMKPDWDSLASTFEDSKKVLIADVDCTTGGKPLCEKYGVRGYPTIKYFNP 101
              F  P+ G C++++P + +L +T   +  +   ++DC    + LC   G +  P IK ++ 
Sbjct: 396922 FYKPYCGACRRVRPFFHALGTTTNHTDVLRFGEIDCVR-HRALCRHAGAKAQPMIKIYSA 396746

Query: 102    PDEEGEDYKGGRSLDELKKF 121
                +  +D       D+ K F
Sbjct: 396745 TRDGYKDTAPSFDADQKKSF 396686



 Score = 33.5 bits (75), Expect = 0.22,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
 Frame = -1

Query: 49     HCKKMKPDWDSLAS--TFEDSKKVLIADVDCTTGG--KPLCEKYGVRGYPTIKYF 99
              + +++ P WD +A       +K++ +A   C      + +C   GVR YPTI Y+
Sbjct: 883132 YSRQVLPLWDEVAKWHASRRTKRLTVAKFSCEASAEHRRVCAAAGVRQYPTITYY 882968


>scaffold_28
          Length = 481284

 Score = 37.4 bits (85), Expect = 0.014,   Method: Composition-based stats.
 Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
 Frame = -3

Query: 22     LTPDNFDELVLKS-GKAAFIKFLAPWXGHCKKMKPDWDSLASTFEDSKKVLIADVDCTTG 80
              LT  NF   V +       ++F APW  HC+ + P +   A   +    V++A +D T  
Sbjct: 386653 LTASNFQNKVNEQYDTGMMVEFYAPWCKHCQALAPVYAEAAQALKGD--VVLAKIDATQA 386480

Query: 81     GKPLCEKYGVRGYPTIKYF 99
                   +++GV GYP++K+F
Sbjct: 386479 QALA-QQHGVTGYPSVKFF 386426


>scaffold_2
          Length = 3465789

 Score = 37.0 bits (84), Expect = 0.022,   Method: Composition-based stats.
 Identities = 27/75 (36%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
 Frame = -3

Query: 24     PDNFDELVLKS---GKAAFIKFLAPWXGHCKKMKPDWDSLASTFEDSKKVLIADVDCTTG 80
              P +F+EL L S   GK   I F A W G C+K+ P +  LA   ED  + L   VD    
Sbjct: 893569 PTSFEELKLLSETAGKLVVIDFSATWCGPCQKIAPVFAKLA---EDVPEALFVKVDVDEV 893399

Query: 81     GKPLCEKYGVRGYPT 95
                     +GV+  PT
Sbjct: 893398 PDA-SAHFGVQALPT 893357



 Score = 29.3 bits (64), Expect = 3.7,   Method: Composition-based stats.
 Identities = 27/87 (31%), Positives = 38/87 (43%), Gaps = 2/87 (2%)
 Frame = -1

Query: 37      AAFIKFLAPWXGHCKKMKPDWDSLASTFEDSKKVLIADVDCTTGGKPLCEKYGVRGYPTI 96
               AA ++  A W G C+ +KP     A T +   +V   DVD         E   V   PT+
Sbjct: 3025116 AALVEVGAAWCGPCQALKPVLADAAQTSKGLLRVYCVDVDSEPAVAAALE---VTQMPTV 3024946

Query: 97      KYFNPPDEEGEDYKGG--RSLDELKKF 121
                 F   D    D+  G  RS +EL++F
Sbjct: 3024945 --FAVRDGALVDHIVGMPRSAEELQRF 3024871


>scaffold_20
          Length = 721792

 Score = 33.9 bits (76), Expect = 0.15,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 11/90 (12%)
 Frame = -1

Query: 22    LTPDNFDELV---LKSGKAAFIKFLAPWX-GHCKKMKPDWDSLASTFEDSKKVLIADVD- 76
             LTP NF+  +   LK GK A ++F+A    G   K    W +     +D   V+  D++ 
Sbjct: 91507 LTPSNFNGFITGALKEGKTAMVRFIASEG*G**VKQSSGWRAAYEAMKDDPGVVFGDINL 91328

Query: 77    ------CTTGGKPLCEKYGVRGYPTIKYFN 100
                       G P+    G  G+PT++YFN
Sbjct: 91327 RESPIRSAPDGTPM--NPGAGGWPTLRYFN 91244


>scaffold_11
          Length = 1405779

 Score = 33.9 bits (76), Expect = 0.18,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 30/60 (50%)
 Frame = +3

Query: 40     IKFLAPWXGHCKKMKPDWDSLASTFEDSKKVLIADVDCTTGGKPLCEKYGVRGYPTIKYF 99
              +KF A W   CK + P ++ LA  F    +V   +++     K LC +  ++  P ++YF
Sbjct: 386637 VKFYASWCRACKSIAPRFERLAKEFA-GDEVQFFEIE-FAANKELCRRLNIKKLPCVQYF 386810


>scaffold_228
          Length = 10531

 Score = 29.6 bits (65), Expect = 3.3,   Method: Composition-based stats.
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +2

Query: 21   ELTPDNFDELVLKSGKAAFIKFLAPWXGHCKKMKPDW 57
            EL  + FD +V  S     ++F  P  GHC+ M+P++
Sbjct: 3230 ELNDETFDSVVDGSAHV-LVEFYKPDCGHCQTMEPEF 3337


  Database: genome.fa
    Posted date:  Feb 16, 2009  1:41 PM
  Number of letters in database: 56,660,578
  Number of sequences in database:  1185
  
Lambda     K      H
   0.312    0.132    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1185
Number of Hits to DB: 11,288,494
Number of extensions: 159782
Number of successful extensions: 576
Number of sequences better than 10.0: 26
Number of HSP's gapped: 560
Number of HSP's successfully gapped: 48
Length of query: 223
Length of database: 18,886,859
Length adjustment: 100
Effective length of query: 123
Effective length of database: 18,768,359
Effective search space: 2308508157
Effective search space used: 2308508157
Neighboring words threshold: 13
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 50 (23.9 bits)
