
genewise output
Score 100.83 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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gi|159466552|re   10 RAALLLLCGLPASGKSSLAARLEELLTNTPTTANSHFRIARVILVHFDD 
                     R  L++L GLPA GKS++A  +     ++           RV +V FDD 
                     RGVLVVLMGLPAVGKSTVARGVAAAADDS----------VRVDVVRFDD 
scaffold_6:subs 2757 cggcggcagccgggataggcggggggggt          gcggggctgg 
                     ggttttttgtcctgacctcggtccccaac          tgtattgtaa 
                     ccgccgcgcggggcgggcgcccggggccc          gccccgcccc 


gi|159466552|re   59 FLHAELA-RQFFSQEAWQRSRTAALERLMGALEAAMGEDESGGHVLVIA 
                      L A  A  + F  E W+ SR A+L R+   LEAA G    G   +V+A 
                     DLEARGAVAEAFDAEQWRASRAASLARVRSLLEAAGG----GVDRVVVA 
scaffold_6:subs 2874 gcggcggggggtgggctcgacggtcgcgctccggggg    gggcgggg 
                     atacggctcactacaaggcggccctcgtgcttaccgg    gtagtttc 
                     ccggcccccgccccgggcgccgggcgcggggcgcgcc    cccccccg 


gi|159466552|re  107 DDNFQLRSMRHALFRAARDRGMAFIQAHVDCSLATACTRNQQRTGLAAV 
                     DDN + RSMR  LF AARDRG AF   HV  +      RN  R     V 
                     DDNCEYRSMRRELFVAARDRGWAFAVVHVAGASDVCERRNAARPDRERV 
scaffold_6:subs 3009 ggatgtctaccgctgggcgcgtgtgggcggggaggtgccaggccgcgcg 
                     aaagaagctggatttccgagggctcttatcgcgatgaggaccgcagagt 
                     ccccgcgcggcgccccggcccgcccccccccgccccggcccgggccgcg 


gi|159466552|re  156 PQEALCRMAQQFEPPQP----ERFAWEASSLLWPADRVQALVHELQRLW 
                     P   +  MA ++EPP P    ERFA   +S   PA  V AL    +    
                     PAATIAAMAARLEPPDPAAGWERFARTLASGDDPA-LVLALAAAARAAG 
scaffold_6:subs 3156 cggaaggaggccgccgcgggtgctgcacgtgggcg cgcgcggggcggg 
                     cccctcctccgtaccacccggagtcgctccgaacc tttctccccgccg 
                     cgggcgggcggcgggccggcggccgcggcccccgg cccccgggccccc 


gi|159466552|re  201 GPPPPQPPSAEELQRQREEGQAANATSYVHGLDVRSRKALSEAVATA   
                      P  P+ P     +     G  A A S  H LD+R R  +    A A   
                     APERPEDPEVAAARLAAARG--ATARSDAHALDLRLRACVGAVAARA   
scaffold_6:subs 3300 gcgacggcgggggccgggcg  gagcaggcgcgccccgtggggggcg   
                     ccagcaacatcccgtcccgg  cccggacactatgtgcgtgctccgc   
                     ggggcgtcgcgcggcgggcc  ggggccgcgccgccccccccccgcc   


//
>scaffold_6:subseq(1235208,6245).pep
RGVLVVLMGLPAVGKSTVARGVAAAADDSVRVDVVRFDDDLEARGAVAEAFDAEQWRASR
AASLARVRSLLEAAGGGVDRVVVADDNCEYRSMRRELFVAARDRGWAFAVVHVAGASDVC
ERRNAARPDRERVPAATIAAMAARLEPPDPAAGWERFARTLASGDDPALVLALAAAARAA
GAPERPEDPEVAAARLAAARGATARSDAHALDLRLRACVGAVAARA
//
>scaffold_6:subseq(1235208,6245).[2757:3434].sp
CGCGGCGTGCTCGTCGTGCTCATGGGCCTGCCGGCGGTGGGCAAGTCGACGGTCGCGCGC
GGCGTCGCGGCGGCGGCGGACGACTCCGTGCGCGTCGACGTCGTGCGCTTCGACGACGAC
CTCGAGGCGCGCGGCGCCGTCGCCGAGGCCTTCGACGCCGAGCAGTGGCGCGCGAGCCGC
GCGGCGTCGCTCGCGCGCGTGCGGTCGCTGCTCGAGGCCGCGGGCGGCGGCGTCGACCGC
GTCGTCGTCGCGGACGACAACTGCGAGTACCGGTCCATGCGGCGCGAGCTCTTCGTCGCC
GCGCGGGACCGCGGCTGGGCCTTCGCCGTCGTCCACGTCGCCGGCGCGAGCGACGTCTGC
GAGCGGCGCAACGCCGCGCGGCCGGACCGCGAGCGCGTGCCCGCGGCGACGATCGCGGCG
ATGGCCGCGCGGCTCGAGCCGCCGGACCCCGCGGCGGGCTGGGAGCGCTTCGCGCGCACG
CTGGCCTCCGGCGACGACCCGGCGCTCGTCCTCGCCCTCGCGGCGGCGGCCCGCGCCGCC
GGCGCGCCGGAGAGGCCCGAGGATCCCGAGGTCGCGGCCGCGCGGCTCGCGGCGGCGCGC
GGCGCGACGGCGCGGAGCGACGCGCACGCGCTCGACCTGCGCCTCCGCGCCTGCGTCGGC
GCCGTCGCCGCGCGCGCC
//
scaffold_6:subseq(1235208,6245)	GeneWise	match	2757	3434	116.81	+	.	scaffold_6:subseq(1235208,6245)-genewise-prediction-1
scaffold_6:subseq(1235208,6245)	GeneWise	cds	2757	3434	0.00	+	0	scaffold_6:subseq(1235208,6245)-genewise-prediction-1
//
