
genewise output
Score 468.23 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

gi|113478148|re    6 PPKTDLVLIGGGHSHAIALR----                          
                     P  TDLVLIGGGHSH   LR                              
                     PELTDLVLIGGGHSHVHVLRMLGT           K:V[gtg]       
scaffold_6:subs-5304 cgcagcgcagggcacgcgccacgaGTGTGGAAA  Intron 1       
                     catcattttgggagatattgttgc  <2-----[5230 : 5032]    
                     ggggcccgcccccccgcggcgcct                          


gi|113478148|re   26     FAMNPIPGVRLTLITDVYHTPYSGMLPGYVAGLYNFDQCHIDLLP 
                         + M P+ GVRLTL+T    TPYSGMLPG+VAG Y+ D+CHIDL   
                         LGMEPLEGVRLTLVTRDVETPYSGMLPGHVAGFYDRDECHIDLNA 
scaffold_6:subs-5034 CAGGcgagccgggctacgacgggactagaccgcgggttgcggtcagcag 
                     -2> tgtactagtgtcttcgataccaggttcgatcgtaagaagatatac 
                         gcgggcgccggtggcccgggccccgcgccccgtccccgccccccg 


gi|113478148|re   72 LAKFAGARIFLSHAIGLDLEKNQILC--TSRPPVNFDLLSIDIGSTPAS 
                     LA+FA  R++      +D++  +++    +RP + +D+LSI++G  P   
                     LARFARCRLIDGEVTRVDVDAKELVLKDAARPRIPYDVLSINVGIAPKG 
scaffold_6:subs-4895 cgctgctctaggggacgggggagcgcagggcccactggctaaggagcag 
                     tcgtcgggttagatcgtatacaatttaaccgcgtcaattctatgtccag 
                     cgccggcggcccgcgcccgccggcccgcggggcccccgcccccccgcgc 


gi|113478148|re  119 LTVPGAIEYAIAVKPISKFLTYWDKITTMISKSPTQKTR--IAIVGGGA 
                      +   +      VKPI+ F   WD +   ++     +    + +VGGGA 
                     ASSSSSA-LLTPVKPIATFSEKWDGLLEKMAGWTLDRAPYDLVVVGGGA 
scaffold_6:subs-4748 gtttttg ccacgacagattgatggccgaaggtacgagctgcggggggg 
                     ccccccc ttcctactcctcaagagttaatcggctagccaattttgggc 
                     ggggggg gcgccgccggccgggccgcggggcgcccggccccccccccc 


gi|113478148|re  166 GGVELAFAVQSHLH-QIYRNAKQPTDNLELHLFHRGKRLLPQRHHWVGK 
                     GGVELA+A+ + +   +    K P       L  R   LL      V   
                     GGVELALAMVARVRRELEALGKDPDTFARFALVARSAELLRSHAPGVRA 
scaffold_6:subs-4604 ggggcgcgaggcgccgcggcgagcgatgctgcggcaggcccacgcggcg 
                     ggtatctcttcgtggatactgaacactcgtcttcggcattggaccgtgc 
                     cccggcgcgcgcgcggcggccgcgtccgccgccggcgggcgccggcggg 


gi|113478148|re  214 EVEKILKSRGV-LLHLKESVEEVRGDDQELPTNVEGNKTFHSLYSTLKM 
                      + + L   GV  L+  E++E V            G K    L   LK  
                     LMARALDRAGVHVLYGHEALEAVPA--------AAGGKA--GLACRLKN 
scaffold_6:subs-4457 cagcgcgcgggcgctgcggcgggcg        ggggag  gcgtctaa 
                     ttcgctagcgtattagaactactcc        ccggac  gtcggtaa 
                     cgcgggcgccgccccccgccgccgg        gcccgc  gcgccgac 


gi|113478148|re  262 ICCASGLEIECDILFWVTQASASPWLQKAGLATDTRGFVLVNEKLQ--- 
                         +   +  D   W TQA+A+PWL  +G   D  GF+ V+E  +    
                     ---GAATTVPFDECVWCTQAAAAPWLGASGFGVDADGFLRVDEYQRCGL 
scaffold_6:subs-4340    gggaagctggtgttacggggctcggtgtggggggttagggtcctgc 
                        gcccctctaagtggcacccccgtgccgtgtacagttgtaaaagggt 
                        ccggcgcccgccgcggcgggcgcgggcccccgcgtggccgcggccc 


gi|113478148|re  308 ------SISHPQVFAAGDVATIINHSRPKAGVFAVRQGQPLFENLQRAL 
                             +  +V+AAGD A++  H RPKAGVFAV  G  L+ NL   + 
                     AGDVAGTRASTRVYAAGDCASVDGHPRPKAGVFAVMAGMALYANLVADV 
scaffold_6:subs-4202 ggggggacgtacgtggggtgtgggccccagggtggaggagctgacgggg 
                     cgatcgcgcccgtaccgagcctagacgcacgttcttcgtctacattcat 
                     gcccgggcgggccccgcccgcccccggcgccccccggcggccgcccgcc 


gi|113478148|re  351 KKKLLKSFIPQKKFLILIGTGDERAIASRGRIGFGPHKLLWRWKNRIDR 
                           + +PQ  FL L+GTGD  A+ASRG + +     LW  K+ IDR 
                     CGSPTLAHVPQTSFLGLLGTGDGAAVASRGGLAI-EAPWLWDLKDWIDR 
scaffold_6:subs-4055 tgtcacgcgccattcgtcgagggggggtcggcga ggctctgcagtagc 
                     ggccctcatcaccttgttgcgagcctccgggtct accgtgataagtag 
                     cggggcgcgcgggcccggcgccccccgggccccc ggcgcgccgcgccc 


gi|113478148|re  400 KFMAQFS----NLKMED--------RTQKAEDRK---QDSQMYCAGCGA 
                     K+M Q++     L   D         T+   D       + M C GCGA 
                     KWMWQYTKGLPDLSERDGDFPPFAAATKAGGDALAVLKAAPMRCGGCGA 
scaffold_6:subs-3911 atatctaagccgctgcgggtcctgggaagggggcggcaggcactggtgg 
                     agtgaacagtcatcagagatcctccccacggactcttaccctggggggc 
                     gggggcggggcccgggccccgccgggggccccgccgcgggcgccccccc 


gi|113478148|re  434 KVTSRVLENVLHKIPQEIRRD-------DILIGMDTPDDAAVIRVPADR 
                     KV +  L   L  +P+ +  D       D+++G+D PDD AV+    ++ 
                     KVGASALTRALANLPKSLTFDNGTPPPCDVVVGVDAPDDGAVVAYGPEK 
scaffold_6:subs-3764 agggtgcacgcgaccatcatgagaccctggggggggcgggggggtgcga 
                     atgccctcgctcatcactctaagccccgatttgtaccaagcttcagcaa 
                     gccgcgcgcgggcgggggcccccgggcccccccccgcccccccccccgg 


gi|113478148|re  476 ----VMVQTIDYFRGLLDDPYLLGKITANHCLSDLFAMGAMAQSGLAIA 
                          +V T+D+FR  + DPY+ G+I ANH LSD  AMGA+  S LA+  
                     DQRTQVVHTVDFFRSFVSDPYVFGQIAANHALSDCDAMGALPASALALV 
scaffold_6:subs-3617 gccacggcaggttcttgtgctgtgcaggacgctgtggaggccgtgcgcg 
                     aagcattactattgcttcacattgatccaactcagactgctcccctctt 
                     cggcgcctcccccggcggcccctggccgccgcgccccgcggcgggggcc 


gi|113478148|re  521 TIPYAAPSKQEDTLYQLLLGATEVLNQSGAVLIGGHTTEGEELAFGLTC 
                      +PY +    EDTL+QL+ GA   L+ +G  L+GGHT EG EL +G    
                     VVPYGSNRCVEDTLFQLMSGARVALDAAGCTLVGGHTCEGAELGLGFAV 
scaffold_6:subs-3470 ggctgtactgggactccatggcggcggggtatgggcatggggcgcgtgg 
                     ttcagcaggtaacttattcgcgtctaccggcttggacgagcatgtgtct 
                     cgccggcgccgcgccgcgccgccggccgcctgccccgcgcggcggcccc 


gi|113478148|re  570 NGLVSQ-KKLLYKGGMQPGDMLILTKALGTGTLFAADMRLKARGRWIES 
                     NG+       L K GM  GD LILTK LGTG +FA DMR  +R   +   
                     NGVPDGGAAFLSKEGMVAGDALILTKPLGTGAVFAGDMRALSRAAEVRE 
scaffold_6:subs-3323 aggcgggggtctaggagggggcacaaccgagggtgggacgctcggggcg 
                     agtcaggccttcaagttcgactttcactgcgcttcgatgctcgccatga 
                     ccggcccgccgcggcgcgccggccgggccgcgccgccgcggggccgccg 


gi|113478148|re  618 AIKSMLGSNQNAAQLLLEYGVTACTDVTGFGLVGHLLEMLKGQ-RVGVE 
                      + SM  SN+ AA  L E+G T+CTDVTGFGL+GHL EM +      VE 
                     CLASMTQSNRAAATELKEHGCTSCTDVTGFGLLGHLAEMCRASGGARVE 
scaffold_6:subs-3176 tcgtaacaacgggagcagcgtattaggagtgccgccggatcgtgggcgg 
                     gtcctcagagccccataaaggccgcatcgtgttgatcatggccggcgta 
                     ccgcgcgcccgggggcggcccgccgccgccgccgtggggccggccgcgg 


gi|113478148|re  666 LDMEAIPVLPGVAETLEQGIFSSLYPGNLQMSASIQNREQASMYPL--Y 
                     L + A PV  G       G+FSSL   NL+   +++N  +A       Y 
                     LSLAATPVFAGAKRLARDGVFSSLQDENLRAKRAVENHGEAVELDAAAY 
scaffold_6:subs-3029 ctcggacgtgggaccgcgggttaccggaccgacgggacgggggcggggt 
                     tctccccttcgcagtcgagttcgtaaaatgcagctaaagactataccca 
                     cgggggcccccggcgggccccgccgcgcccggcccgcccgccgccggcc 


gi|113478148|re  713 PLLFDPQTSGGLLATVPANLASACLNALQQE-YFETRIIGRVLLLDTGM 
                      LLFDPQT+GGLLATVPA+ A A L A+++       +IG V  +D    
                     ALLFDPQTAGGLLATVPADRADAALAAIRRVGCARAAVIGTVAAVDAAH 
scaffold_6:subs-2882 gcctgccagggccgagcggcggggcggaccggtgcgggagagggggggc 
                     ctttacaccggttcctccagcacctcctggtggcgccttgctcctacca 
                     gcccccgcggggggggcgccccgccggccccccgccgccccgccccgcc 


gi|113478148|re  761 LPIRI                                             
                      P ++                                             
                     FPAKV                                             
scaffold_6:subs-2735 tcgag                                             
                     tccat                                             
                     ccggc                                             


//
Making a V in phase 2 intron
 >scaffold_6:subseq(1815585,6626).pep
PELTDLVLIGGGHSHVHVLRMLGTVLGMEPLEGVRLTLVTRDVETPYSGMLPGHVAGFYD
RDECHIDLNALARFARCRLIDGEVTRVDVDAKELVLKDAARPRIPYDVLSINVGIAPKGA
SSSSSALLTPVKPIATFSEKWDGLLEKMAGWTLDRAPYDLVVVGGGAGGVELALAMVARV
RRELEALGKDPDTFARFALVARSAELLRSHAPGVRALMARALDRAGVHVLYGHEALEAVP
AAAGGKAGLACRLKNGAATTVPFDECVWCTQAAAAPWLGASGFGVDADGFLRVDEYQRCG
LAGDVAGTRASTRVYAAGDCASVDGHPRPKAGVFAVMAGMALYANLVADVCGSPTLAHVP
QTSFLGLLGTGDGAAVASRGGLAIEAPWLWDLKDWIDRKWMWQYTKGLPDLSERDGDFPP
FAAATKAGGDALAVLKAAPMRCGGCGAKVGASALTRALANLPKSLTFDNGTPPPCDVVVG
VDAPDDGAVVAYGPEKDQRTQVVHTVDFFRSFVSDPYVFGQIAANHALSDCDAMGALPAS
ALALVVVPYGSNRCVEDTLFQLMSGARVALDAAGCTLVGGHTCEGAELGLGFAVNGVPDG
GAAFLSKEGMVAGDALILTKPLGTGAVFAGDMRALSRAAEVRECLASMTQSNRAAATELK
EHGCTSCTDVTGFGLLGHLAEMCRASGGARVELSLAATPVFAGAKRLARDGVFSSLQDEN
LRAKRAVENHGEAVELDAAAYALLFDPQTAGGLLATVPADRADAALAAIRRVGCARAAVI
GTVAAVDAAHFPAKV
//
>scaffold_6:subseq(1815585,6626).[5304:2719].sp
CCGGAGCTGACGGACCTCGTCCTGATCGGCGGCGGCCACAGCCACGTGCACGTGCTGCGC
ATGCTCGGCACTGTGCTGGGCATGGAGCCGCTCGAGGGCGTCCGGTTGACTCTGGTGACC
CGCGACGTGGAGACGCCCTACAGCGGCATGCTCCCGGGCCACGTCGCCGGGTTTTACGAC
CGCGACGAGTGCCACATCGACCTCAACGCGCTCGCGCGCTTCGCGCGGTGCCGGTTGATC
GACGGCGAGGTCACGCGCGTCGACGTGGACGCCAAGGAGCTCGTCCTCAAGGACGCGGCG
CGGCCGCGCATCCCCTACGACGTGCTCTCCATCAACGTCGGCATCGCGCCCAAGGGCGCG
TCGTCGTCGTCGTCGGCGCTGCTCACGCCCGTCAAGCCCATCGCGACGTTCTCCGAGAAG
TGGGACGGCCTGCTCGAGAAGATGGCGGGCTGGACCCTCGACAGGGCGCCCTACGACCTC
GTCGTCGTCGGCGGCGGCGCCGGCGGCGTCGAGCTGGCCCTGGCCATGGTCGCGCGCGTG
CGCCGGGAGCTCGAGGCGCTCGGCAAGGACCCGGATACCTTCGCGCGCTTCGCGCTCGTC
GCGCGGAGCGCGGAGCTGCTCCGGAGCCACGCGCCGGGCGTGCGGGCGCTCATGGCCCGG
GCGCTGGACCGGGCCGGCGTGCACGTCCTCTACGGCCACGAGGCCCTCGAGGCCGTCCCG
GCGGCGGCCGGCGGCAAGGCCGGGCTCGCGTGCCGCTTGAAAAACGGCGCCGCGACGACC
GTGCCCTTCGACGAGTGCGTCTGGTGCACGCAGGCCGCGGCGGCGCCCTGGCTCGGGGCG
TCGGGCTTCGGCGTCGACGCGGACGGGTTTTTGAGGGTCGACGAGTACCAGCGGTGCGGC
CTCGCGGGCGACGTCGCGGGGACGCGCGCGTCGACGCGCGTCTACGCCGCGGGCGACTGC
GCGTCCGTCGACGGCCACCCGCGGCCCAAGGCCGGCGTCTTCGCCGTCATGGCGGGCATG
GCGCTCTACGCGAACCTCGTCGCGGACGTCTGCGGGTCGCCGACGCTCGCGCACGTGCCC
CAGACGTCGTTCCTCGGCTTGCTGGGCACGGGCGACGGCGCCGCCGTCGCGTCGCGGGGC
GGCCTCGCCATCGAGGCGCCCTGGCTCTGGGACCTCAAGGACTGGATCGACCGCAAGTGG
ATGTGGCAGTACACGAAGGGGCTGCCCGACCTCTCGGAGCGGGACGGCGACTTCCCGCCC
TTCGCGGCGGCGACGAAGGCCGGCGGCGACGCGCTCGCCGTGCTCAAGGCGGCGCCCATG
CGCTGCGGCGGCTGCGGCGCCAAGGTCGGCGCGTCCGCGCTCACGCGCGCGCTGGCGAAC
CTGCCGAAGTCGCTGACCTTCGACAACGGCACGCCGCCGCCCTGCGACGTCGTCGTCGGC
GTCGACGCGCCCGACGACGGCGCCGTCGTCGCCTACGGCCCCGAGAAGGACCAGCGGACC
CAGGTCGTCCATACCGTCGACTTCTTCCGGTCGTTCGTGTCGGACCCCTACGTCTTTGGG
CAGATCGCCGCGAACCACGCGCTCTCGGACTGCGACGCCATGGGCGCGCTGCCCGCGTCG
GCGCTGGCGCTCGTCGTCGTGCCCTACGGGTCGAACCGGTGCGTCGAGGACACGCTCTTC
CAGCTCATGTCCGGCGCGCGCGTCGCGCTGGACGCCGCGGGCTGCACTTTGGTCGGCGGC
CACACGTGCGAGGGCGCGGAGCTCGGGCTGGGCTTCGCCGTCAACGGCGTGCCGGACGGC
GGCGCGGCCTTCCTGTCCAAGGAGGGCATGGTCGCGGGCGACGCGCTGATCCTCACGAAG
CCGCTCGGCACGGGCGCGGTCTTCGCGGGCGACATGCGCGCGCTGTCGCGGGCCGCCGAG
GTCCGCGAGTGCCTCGCGTCCATGACCCAGAGCAACCGCGCGGCGGCGACGGAGCTCAAG
GAGCACGGCTGCACGTCCTGCACGGACGTCACGGGCTTCGGGCTCCTCGGGCATCTGGCG
GAGATGTGCCGCGCGTCGGGCGGCGCGCGCGTGGAGCTCTCGCTGGCGGCGACGCCCGTC
TTCGCCGGCGCGAAGCGCCTGGCGCGGGACGGCGTCTTCTCGAGCCTCCAGGACGAGAAC
CTCCGCGCGAAGCGCGCCGTCGAGAACCACGGCGAGGCCGTCGAGCTCGACGCGGCGGCC
TACGCGCTCCTCTTCGACCCCCAGACCGCGGGGGGGCTGCTGGCGACGGTGCCCGCGGAC
CGCGCCGACGCGGCCCTCGCGGCGATCCGCCGCGTCGGCTGCGCGCGCGCCGCGGTCATC
GGCACCGTGGCCGCCGTCGACGCGGCCCACTTCCCCGCGAAGGTC
//
scaffold_6:subseq(1815585,6626)	GeneWise	match	5304	2721	513.16	-	.	scaffold_6:subseq(1815585,6626)-genewise-prediction-1
scaffold_6:subseq(1815585,6626)	GeneWise	cds	5304	5231	0.00	-	0	scaffold_6:subseq(1815585,6626)-genewise-prediction-1
scaffold_6:subseq(1815585,6626)	GeneWise	intron	5230	5032	0.00	-	.	scaffold_6:subseq(1815585,6626)-genewise-prediction-1
scaffold_6:subseq(1815585,6626)	GeneWise	cds	5031	2721	0.00	-	1	scaffold_6:subseq(1815585,6626)-genewise-prediction-1
//
