
genewise output
Score 49.48 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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gi|159482086|re    1 MPYISRTGTVQERRSPWRLSIVVEFFMGVWGAISTFFMTMVSPQAHEAY 
                     M Y+   GTV E+RS WRLSIV +F+ GV   +  F  T+++PQ+     
                     MVYLRADGTVVEKRSMWRLSIVPDFLWGVVDFFWLFVSTLINPQSEHNS 
scaffold_8:subs 3000 agtccgggagggactatcctagcgtctggggtttctgaacaaccagcat 
                     ttatgcagcttaagctggtcttcattggttattgtttgcttacagaaac 
                     gcccccccgccggccggcgcccccccgccccctgccgcggcccgcgccc 


gi|159482086|re   50 LKQQVKKKDPPRTTGGPRIAGLDNIGGGGGSHLTPGCAGGGX        
                     L+       P R++GG         GGGGG    PG +GGG+        
                     LR-------PKRSSGG-----ATGRGGGGG---RPGGSGGGA        
scaffold_8:subs 3147 cc       cacatgg     gagcggggg   ccggtgggg        
                     tg       caggcgg     ccggggggg   gcggcgggc        
                     ga       aggcccc     ggccccccc   gcccccccg        


//
>scaffold_8:subseq(1138434,6122).pep
MVYLRADGTVVEKRSMWRLSIVPDFLWGVVDFFWLFVSTLINPQSEHNSLRPKRSSGGAT
GRGGGGGRPGGSGGGA + R K V K G L K D C S S S S M S A A G A G G U G   
//
>scaffold_8:subseq(1138434,6122).[3000:3227].sp
ATGGTCTACCTCCGCGCCGACGGCACGGTCGTCGAGAAGCGCTCCATGTGGCGCCTGTCC
ATCGTCCCCGACTTCCTCTGGGGCGTCGTCGACTTCTTTTGGCTCTTCGTGAGCACGCTG
ATCAACCCCCAGAGCGAGCACAACTCCCTGCGACCAAAGCGGAGCTCCGGCGGCGCGACG
GGCCGCGGCGGCGGCGGCGGCCGGCCCGGCGGCTCCGGCGGCGGCGCG

//
scaffold_8:subseq(1138434,6122)	GeneWise	match	3000	3296	61.46	+	.	scaffold_8:subseq(1138434,6122)-genewise-prediction-1
scaffold_8:subseq(1138434,6122)	GeneWise	cds	3000	3296	0.00	+	0	scaffold_8:subseq(1138434,6122)-genewise-prediction-1
//


5'3' Frame 1

gcgcgcaaggtcaagggcctcaaggactgctcgtcgtcgagcatgtccgccgccggcgcg
 A  R  K  V  K  G  L  K  D  C  S  S  S  S  M  S  A  A  G  A 
ggcggctgaggctagaagcgcccgaacccccgcccccgcggcgtcggcgagcgacctgct
 G  G  -  G  -  K  R  P  N  P  R  P  R  G  V  G  E  R  P  A 
cgcgccatgactcgcgcgcggcgcacccgttccacacgacgggagccgcgcgcgacgacc
 R  A  M  T  R  A  R  R  T  R  S  T  R  R  E  P  R  A  T  T 
accgacgccgcggggcggggaccacccccgcccccccccccccccctagagctaagatcc
 T  D  A  A  G  R  G  P  P  P  P  P  P  P  P  L  E  L  R  S 
atgtgccttccttactatgacgtcggcgccgtgatcgtcgcggcgcccgcggacgcgtcg
 M  C  L  P  Y  Y  D  V  G  A  V  I  V  A  A  P  A  D  A  S 
gcgaagaacgccgcccaggcggcgtcgtccgccgggaggataccg
 A  K  N  A  A  Q  A  A  S  S  A  G  R  I  P  







