Command line: [exonerate -m p2g --showtargetgff -q ./Seq.aa.proteines/SelH/chlamydomonas.fa -t ProtDNASeq/selH_scaffold35_seqDNA.fa]
Hostname: [localhost]

C4 Alignment:
------------
         Query: gi|159488837|ref|XP_001702407.1| selenoprotein H [Chlamydomonas reinhardtii]
        Target: scaffold_35:subseq(308838,6335) [revcomp]
         Model: protein2genome
     Raw score: 175
   Query range: 9 -> 126
  Target range: 3341 -> 3002

   10 : AlaAlaGluAlaProAlaLysLysAlaLysAlaProAlaLysLysLysGluAlaGluLysLy :   30
        !.!|||  !||||||  !:::||||||...|||  !  ! ! !..:!!  !  !:!!  !  
        ValAlaMetAlaProLysArgLysAlaSerAlaLysGlnAspSerGluProLysLysAlaAl
 3341 : GTCGCCATGGCGCCGAAACGCAAGGCCTCCGCGAAGCAGGACAGCGAGCCGAAGAAGGCGGC : 3281

   31 : sGluGluThrAlaProValAlaAlaAspAlaGlyAspGlyIleValIleGluAlaCysLysS :   51
        !:!!  !! !|||  !!.! !! !!...! !|||! !! !:!!|||:!!|||||||||||||
        aLysThrLysAlaAspAlaProProSerGluGlyGlyValValValValGluAlaCysLysS
 3280 : GAAGACGAAGGCGGACGCGCCGCCGTCGGAGGGCGGCGTCGTCGTCGTCGAGGCCTGCAAGA : 3218

   52 : erUnkGlyAlaPheLysThrArgAlaThrLysLeuGluLysLeuIleLysGluGlyAlaPro :   71
        ||   |||||||||||||||||||||!.!|||:!!  !|||  !:!::!!!    !|||   
        er***GlyAlaPheLysThrArgAlaAsnLysValLeuLysAlaLeuGluGlyLysAla---
 3217 : GCTGAGGCGCGTTCAAGACCCGCGCGAACAAGGTCTTGAAGGCTTTGGAAGGCAAGGCG--- : 3158

   72 : GlyThrSerValSerValAsnProAspLysProArgLysGlyCysPheGluValArgGlyPr :   92
              ..!|||!.!:!!|||  !!!:|||||||||||||||..!|||!  |||   ..!  
        ------GluValLysIleAsnGluGluLysProArgLysGlyAlaPheValVal---SerVa
 3157 : ------GAGGTGAAGATCAACGAGGAGAAGCCGCGCAAGGGCGCCTTCGTCGTC---TCCGT : 3107

   93 : oGlyGlyLysThrPheValSerLeuLeuAspMetProArgProPheThrLysLeuLysAlaL :  113
        !|||! !! !! ! !!|||..!||||||||||||  !||||||||| !!  !||||||||||
        lGlyAspThrLysValValGluLeuLeuAspMetLysArgProPheProAlaLeuLysAlaL
 3106 : CGGCGACACAAAGGTCGTCGAGCTCCTCGACATGAAGCGGCCGTTCCCGGCGCTGAAGGCGC : 3044

  114 : euAspValGluAlaLeuAlaGluGluValLeuAlaAlaLeu :  126
        |||||:!!!!:! !:!!|||! !!!:|||  !  !||||||
        euAspMetAspAspValAlaAlaAspValGluLysAlaLeu
 3043 : TGGACATGGACGACGTCGCCGCGGACGTCGAGAAGGCGCTG : 3003

vulgar: gi|159488837|ref|XP_001702407.1| 9 126 . scaffold_35:subseq(308838,6335) 3341 3002 - 175 M 61 183 G 3 0 M 16 48 G 1 0 M 36 108
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome 1.4.0
##date 2009-03-03
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
scaffold_35:subseq(308838,6335)	exonerate:protein2genome	gene	3003	3341	175	-	.	gene_id 1 ; sequence gi|159488837|ref|XP_001702407.1| ; gene_orientation .
scaffold_35:subseq(308838,6335)	exonerate:protein2genome	cds	3003	3341	.	-	.	
scaffold_35:subseq(308838,6335)	exonerate:protein2genome	exon	3003	3341	.	-	.	insertions 0 ; deletions 4
scaffold_35:subseq(308838,6335)	exonerate:protein2genome	similarity	3003	3341	175	-	.	alignment_id 1 ; Query gi|159488837|ref|XP_001702407.1| ; Align 3342 10 183 ; Align 3159 74 48 ; Align 3111 91 108
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis
