Command line: [exonerate -m p2g --showtargetgff -q ./Seq.aa.proteines/Sel15.fa -t ProtDNASeq/sel15_scaffold5_seqDNA.fa]
Hostname: [localhost]

C4 Alignment:
------------
         Query: SPP00000057_1.0 # Protein # Selenoprotein 15 (Sel15) # Caenorhabditis elegans # Complete
        Target: scaffold_5:subseq(1865605,6224) [revcomp]
         Model: protein2genome
     Raw score: 121
   Query range: 27 -> 148
  Target range: 3191 -> 2837

   28 : GluCysLysAlaAlaGlyPheAsnProGluThrLeuLysCysGlyLeuCysGluArgLeuSe :   48
        !!:|||   ! !|||||||||!..   ! !:!!|||:::|||..!! !|||! !!:!|||..
        AspCysLeuGluAlaGlyPheThr---AlaSerLeuArgCysSerSerCysAlaLysLeuGl
 3191 : GACTGCCTCGAGGCCGGCTTCACG---GCGTCGCTGCGCTGCTCGTCCTGCGCGAAGCTCGA : 3134

   49 : rAspTyrHisLeuGluThrLeuLeuThrAspCysLeuGlnCysCysIleLysGluGluGluP :   69
        !..!  !  !! !!!: !!  !|||.!!! !  !! !   ..!|||  !!..|||!!:  ! 
        uSerLeuValProAspProGluLeuAlaAlaAspCysGlyAlaCysCysSerGluAspLeuS
 3133 : GAGCCTCGTCCCGGATCCCGAGCTCGCCGCCGACTGCGGCGCCTGCTGCAGCGAGGACCTGA : 3071

   70 : heLysHisGluLysTyrProThrAlaIleLeuGluValCysGluCysAsnLeuAlaArgPhe :   89
         !      ! !!..||| !!:!!|||||||||||||||||||||!! !!.|||!.!!.!!:!
        erAlaSerAlaSerTyrAlaSerAlaIleLeuGluValCysGlu***LysLeuGlyHisTyr
 3070 : GCGCCTCGGCGAGCTACGCGTCGGCGATTCTCGAGGTCTGCGAGTGAAAGCTGGGCCACTAC : 3011

   90 : ProGlnValGlnAlaPheValHisLysAspMetAlaArgGlnPheGlyGlyLysValLysVa :  110
        |||   :!!   ! !|||:!!.!.::!        !!!!.!.  !  !|||...:!! ! ||
        ProAlaIleGlyAspPheIleGluArg------ArgSerAspThrTyrGlySerLeuAspVa
 3010 : CCGGCCATCGGCGACTTCATCGAGCGG------CGGAGCGATACCTACGGGTCCCTCGACGT : 2954

  111 : lLysHisValArgGlyValArgProGlnValAlaLeuLysAspAlaAspPheLysThrLysG :  131
        |::::!!  !!:!|||  !!:!|||!:!:!!  !:!!   |||! !|||  !:!!..!  !|
        lArgTyrLysGlnGlyGlnLysProArgLeuLeuMetValAspAspAspGlyGluValAlaG
 2953 : GCGCTACAAGCAGGGCCAGAAGCCGCGGCTGCTGATGGTCGACGACGACGGCGAGGTCGCGG : 2891

  132 : luValLeuSerValGluLysTrpAspThrAspThrLeuIleAspPhePheAsn :  148
        ||..!:!! !!:!!!     |||:!!  !||||||:!!  !!!:!:!.!!:!!
        luThrValProIleGlyGlyTrpAsnGluAspThrValAlaGluTyrLeuAsp
 2890 : AGACGGTGCCCATCGGCGGCTGGAACGAGGACACCGTCGCCGAGTACCTCGAC : 2838

vulgar: SPP00000057_1.0 27 148 . scaffold_5:subseq(1865605,6224) 3191 2837 - 121 M 8 24 G 1 0 M 62 186 G 2 0 M 48 144
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome 1.4.0
##date 2009-02-24
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
scaffold_5:subseq(1865605,6224)	exonerate:protein2genome	gene	2838	3191	121	-	.	gene_id 1 ; sequence SPP00000057_1.0 ; gene_orientation .
scaffold_5:subseq(1865605,6224)	exonerate:protein2genome	cds	2838	3191	.	-	.	
scaffold_5:subseq(1865605,6224)	exonerate:protein2genome	exon	2838	3191	.	-	.	insertions 0 ; deletions 3
scaffold_5:subseq(1865605,6224)	exonerate:protein2genome	similarity	2838	3191	121	-	.	alignment_id 1 ; Query SPP00000057_1.0 ; Align 3192 28 24 ; Align 3168 37 186 ; Align 2982 101 144
# --- END OF GFF DUMP ---
#

C4 Alignment:
------------
         Query: SPP00000040_1.0 # Protein # Selenoprotein 15 (Sel15) # Drosophila melanogaster # Complete
        Target: scaffold_5:subseq(1865605,6224) [revcomp]
         Model: protein2genome
     Raw score: 171
   Query range: 21 -> 148
  Target range: 3200 -> 2828

   22 : ThrAlaAlaAspCysArgAlaLeuGlyPheIleLysAlaGlnLeuMetCysSerSerCysGl :   42
        .!!:!!  !||||||! !! !  !||||||   ! !|||..!|||   ||||||||||||! 
        AlaSerLeuAspCysLeuGluAlaGlyPhe---ThrAlaSerLeuArgCysSerSerCysAl
 3200 : GCGTCGCTCGACTGCCTCGAGGCCGGCTTC---ACGGCGTCGCTGCGCTGCTCGTCCTGCGC : 3143

   43 : uLysLeuAspAspPheGlyLeuAsp<->ThrIleLysProGlnCysLysGlnCysCysThrL :   62
        !||||||!!:..!.!!! !! !|||     !:!!    !!.!.|||      ||||||!:! 
        aLysLeuGluSerLeuValProAspProGluLeuAlaAlaAspCysGlyAlaCysCysSerG
 3142 : GAAGCTCGAGAGCCTCGTCCCGGATCCCGAGCTCGCCGCCGACTGCGGCGCCTGCTGCAGCG : 3080

   63 : euAspGlnGlnProAlaAlaGlnArgThrTyrAlaLysAlaIleLeuGluValCysThrCys :   82
         !|||! !      ::!|||..!  !!:!||||||..!||||||||||||||||||  !!! 
        luAspLeu------SerAlaSerAlaSerTyrAlaSerAlaIleLeuGluValCysGlu***
 3079 : AGGACCTG------AGCGCCTCGGCGAGCTACGCGTCGGCGATTCTCGAGGTCTGCGAGTGA : 3026

   83 : LysPheArgAlaTyrProGlnIleGlnAlaPheIleGlnSerGlyArgProAlaLysPhePr :  103
        |||.!. !!  !||||||   |||   ! !||||||:!! !!   |||  !! !!  !:!  
        LysLeuGlyHisTyrProAlaIleGlyAspPheIleGluArg---ArgSerAspThrTyrGl
 3025 : AAGCTGGGCCACTACCCGGCCATCGGCGACTTCATCGAGCGG---CGGAGCGATACCTACGG : 2966

  104 : oAsnLeuGlnIleLysTyrValArgGlyLeuAspProValValLysLeuLeuAspAlaSerG :  124
        !::!|||.!.:!::::|||  !!:!|||! ! ! |||  !:!!  !:!!:!!|||! !..!|
        ySerLeuAspValArgTyrLysGlnGlyGlnLysProArgLeuLeuMetValAspAspAspG
 2965 : GTCCCTCGACGTGCGCTACAAGCAGGGCCAGAAGCCGCGGCTGCTGATGGTCGACGACGACG : 2903

  125 : lyLysValGlnGluThrLeuSerIleThrLysTrpAsnThrAspThrValGluGluPhePhe :  144
        ||:!!|||  !||||||:!! !!|||  !   ||||||  !|||||||||!  |||!:!.!!
        lyGluValAlaGluThrValProIleGlyGlyTrpAsnGluAspThrValAlaGluTyrLeu
 2902 : GCGAGGTCGCGGAGACGGTGCCCATCGGCGGCTGGAACGAGGACACCGTCGCCGAGTACCTC : 2843

  145 : GluThrHisLeu :  148
        !!:  !:!!|||
        AspAspAsnLeu
 2842 : GACGACAACCTC : 2829

vulgar: SPP00000040_1.0 21 148 . scaffold_5:subseq(1865605,6224) 3200 2828 - 171 M 10 30 G 1 0 M 18 54 G 0 3 M 14 42 G 2 0 M 30 90 G 1 0 M 51 153
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome 1.4.0
##date 2009-02-24
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
scaffold_5:subseq(1865605,6224)	exonerate:protein2genome	gene	2829	3200	171	-	.	gene_id 1 ; sequence SPP00000040_1.0 ; gene_orientation .
scaffold_5:subseq(1865605,6224)	exonerate:protein2genome	cds	2829	3200	.	-	.	
scaffold_5:subseq(1865605,6224)	exonerate:protein2genome	exon	2829	3200	.	-	.	insertions 3 ; deletions 4
scaffold_5:subseq(1865605,6224)	exonerate:protein2genome	similarity	2829	3200	171	-	.	alignment_id 1 ; Query SPP00000040_1.0 ; Align 3201 22 30 ; Align 3171 33 54 ; Align 3114 51 42 ; Align 3072 67 90 ; Align 2982 98 153
# --- END OF GFF DUMP ---
#

C4 Alignment:
------------
         Query: SPP00000064_1.0 # Protein # Selenoprotein 15 (Sel15) # Tetraodon nigroviridis # Complete
        Target: scaffold_5:subseq(1865605,6224) [revcomp]
         Model: protein2genome
     Raw score: 175
   Query range: 24 -> 150
  Target range: 3200 -> 2828

   25 : SerSerGluAlaCysArgGluLeuGlyPheSerSerAsnLeuLeuCysThrSerCysAspLe :   45
        :!!|||   ! !|||! !|||  !||||||!!!:!!:::|||! !|||:!!||||||!    
        AlaSerLeuAspCysLeuGluAlaGlyPheThrAlaSerLeuArgCysSerSerCysAlaLy
 3200 : GCGTCGCTCGACTGCCTCGAGGCCGGCTTCACGGCGTCGCTGCGCTGCTCGTCCTGCGCGAA : 3140

   46 : uLeuGlyGluPhe<->SerLeuAlaLysLeuGlnProAsnCysGlnGlnCysCysGlnGlnG :   65
        !|||! !....!!    !!  ! !!:!!|||    !!:!!|||      ||||||...:!!!
        sLeuGluSerLeuValProAspProGluLeuAlaAlaAspCysGlyAlaCysCysSerGluA
 3139 : GCTCGAGAGCCTCGTCCCGGATCCCGAGCTCGCCGCCGACTGCGGCGCCTGCTGCAGCGAGG : 3077

   66 : luAlaLeuMetGluGlyArgLysLeuTyrProGlyAlaIleLeuGluValCysGlyUnkLys :   85
        !:      :!!...!.!  !  !  !||| !!..!||||||||||||||||||! !   |||
        sp------LeuSerAlaSerAlaSerTyrAlaSerAlaIleLeuGluValCysGlu***Lys
 3076 : AC------CTGAGCGCCTCGGCGAGCTACGCGTCGGCGATTCTCGAGGTCTGCGAGTGAAAG : 3023

   86 : LeuGlyArgPheProGlnValGlnAlaPheValArgSerGluLysProLysMetPheLysGl :  106
        ||||||!.!!:!|||   :!!   ! !|||:!!   ..!..!::!  ! ! !  !:!  !..
        LeuGlyHisTyrProAlaIleGlyAspPheIle---GluArgArgSerAspThrTyrGlySe
 3022 : CTGGGCCACTACCCGGCCATCGGCGACTTCATC---GAGCGGCGGAGCGATACCTACGGGTC : 2963

  107 : yLeuGlnIleLysTyrValArgGlySerAspProValLeuLysLeuLeuAspAspGluGlyA :  127
        !|||.!.:!::::|||  !!:!|||..! ! |||  !|||  !:!!:!!||||||!!:|||.
        rLeuAspValArgTyrLysGlnGlyGlnLysProArgLeuLeuMetValAspAspAspGlyG
 2962 : CCTCGACGTGCGCTACAAGCAGGGCCAGAAGCCGCGGCTGCTGATGGTCGACGACGACGGCG : 2900

  128 : snIleAlaGluGluLeuSerIleLeuLysTrpAsnThrAspSerValGluGluPheLeuSer :  147
        !.:!!||||||  !:!! !!|||  !   ||||||  !|||!!!|||!  |||!:!|||..!
        luValAlaGluThrValProIleGlyGlyTrpAsnGluAspThrValAlaGluTyrLeuAsp
 2899 : AGGTCGCGGAGACGGTGCCCATCGGCGGCTGGAACGAGGACACCGTCGCCGAGTACCTCGAC : 2840

  148 : GluLysLeu :  150
        !!:!!.|||
        AspAsnLeu
 2839 : GACAACCTC : 2829

vulgar: SPP00000064_1.0 24 150 . scaffold_5:subseq(1865605,6224) 3200 2828 - 175 M 25 75 G 0 3 M 16 48 G 2 0 M 29 87 G 1 0 M 53 159
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome 1.4.0
##date 2009-02-24
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
scaffold_5:subseq(1865605,6224)	exonerate:protein2genome	gene	2829	3200	175	-	.	gene_id 1 ; sequence SPP00000064_1.0 ; gene_orientation .
scaffold_5:subseq(1865605,6224)	exonerate:protein2genome	cds	2829	3200	.	-	.	
scaffold_5:subseq(1865605,6224)	exonerate:protein2genome	exon	2829	3200	.	-	.	insertions 3 ; deletions 3
scaffold_5:subseq(1865605,6224)	exonerate:protein2genome	similarity	2829	3200	175	-	.	alignment_id 1 ; Query SPP00000064_1.0 ; Align 3201 25 75 ; Align 3123 50 48 ; Align 3075 68 87 ; Align 2988 98 159
# --- END OF GFF DUMP ---
#

C4 Alignment:
------------
         Query: SPP00000109_1.0 # Protein # Selenoprotein 15 (Sel15) # Mus musculus # Complete
        Target: scaffold_5:subseq(1865605,6224) [revcomp]
         Model: protein2genome
     Raw score: 190
   Query range: 18 -> 159
  Target range: 3242 -> 2828

   19 : LeuAlaThrAlaPheGlnAlaAlaSerAlaLeuGlyAlaGluPheAlaSerGluAlaCysAr :   39
        :!!|||  !|||.!!     !|||:!!|||||||||::!! !   ||||||   ! !|||! 
        MetAlaArgAlaLeuValPheAlaAlaAlaLeuGlySerAla---AlaSerLeuAspCysLe
 3242 : ATGGCCCGAGCCCTCGTCTTCGCTGCGGCGCTCGGCAGCGCG---GCGTCGCTCGACTGCCT : 3185

   40 : gGluLeuGlyPheSerSerAsnLeuLeuCysSerSerCysAspLeuLeuGlyGlnPheAsnL :   60
        !|||  !||||||!!!:!!:::|||! !||||||||||||!    !|||! !....!!  !!
        uGluAlaGlyPheThrAlaSerLeuArgCysSerSerCysAlaLysLeuGluSerLeuValP
 3184 : CGAGGCCGGCTTCACGGCGTCGCTGCGCTGCTCGTCCTGCGCGAAGCTCGAGAGCCTCGTCC : 3122

   61 : euLeuPro<->LeuAspProValCysArgGlyCysCysGlnGluGluAlaGlnPheGluThr :   79
         !  !|||   |||! ! !!! !||| !!!.!||||||...|||!!:      .!.....!!
        roAspProGluLeuAlaAlaAspCysGlyAlaCysCysSerGluAsp------LeuSerAla
 3121 : CGGATCCCGAGCTCGCCGCCGACTGCGGCGCCTGCTGCAGCGAGGAC------CTGAGCGCC : 3068

   80 : LysLysLeuTyrAlaGlyAlaIleLeuGluValCysGlyUnkLysLeuGlyArgPheProGl :  100
        ..!  !  !||||||..!||||||||||||||||||! !   |||||||||!.!!:!|||  
        SerAlaSerTyrAlaSerAlaIleLeuGluValCysGlu***LysLeuGlyHisTyrProAl
 3067 : TCGGCGAGCTACGCGTCGGCGATTCTCGAGGTCTGCGAGTGAAAGCTGGGCCACTACCCGGC : 3005

  101 : nValGlnAlaPheValArgSerAspLysProLysLeuPheArgGlyLeuGlnIleLysTyrV :  121
         :!!   ! !|||:!!..! !!   ::!  ! !   !!:! !!..!|||.!.:!::::||| 
        aIleGlyAspPheIleGluArg---ArgSerAspThrTyrGlySerLeuAspValArgTyrL
 3004 : CATCGGCGACTTCATCGAGCGG---CGGAGCGATACCTACGGGTCCCTCGACGTGCGCTACA : 2945

  122 : alArgGlySerAspProValLeuLysLeuLeuAspAspAsnGlyAsnIleAlaGluGluLeu :  141
         !!:!|||..! ! |||  !|||  !:!!:!!||||||:!!|||.!.:!!||||||  !:!!
        ysGlnGlyGlnLysProArgLeuLeuMetValAspAspAspGlyGluValAlaGluThrVal
 2944 : AGCAGGGCCAGAAGCCGCGGCTGCTGATGGTCGACGACGACGGCGAGGTCGCGGAGACGGTG : 2885

  142 : SerIleLeuLysTrpAsnThrAspSerValGluGluPheLeuSerGluLysLeu :  159
         !!|||  !   ||||||  !|||!!!|||!  |||!:!|||..!!!:!!.|||
        ProIleGlyGlyTrpAsnGluAspThrValAlaGluTyrLeuAspAspAsnLeu
 2884 : CCCATCGGCGGCTGGAACGAGGACACCGTCGCCGAGTACCTCGACGACAACCTC : 2829

vulgar: SPP00000109_1.0 18 159 . scaffold_5:subseq(1865605,6224) 3242 2828 - 190 M 14 42 G 1 0 M 29 87 G 0 3 M 12 36 G 2 0 M 31 93 G 1 0 M 51 153
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome 1.4.0
##date 2009-02-24
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
scaffold_5:subseq(1865605,6224)	exonerate:protein2genome	gene	2829	3242	190	-	.	gene_id 1 ; sequence SPP00000109_1.0 ; gene_orientation .
scaffold_5:subseq(1865605,6224)	exonerate:protein2genome	cds	2829	3242	.	-	.	
scaffold_5:subseq(1865605,6224)	exonerate:protein2genome	exon	2829	3242	.	-	.	insertions 3 ; deletions 4
scaffold_5:subseq(1865605,6224)	exonerate:protein2genome	similarity	2829	3242	190	-	.	alignment_id 1 ; Query SPP00000109_1.0 ; Align 3243 19 42 ; Align 3201 34 87 ; Align 3111 63 36 ; Align 3075 77 93 ; Align 2982 109 153
# --- END OF GFF DUMP ---
#

C4 Alignment:
------------
         Query: SPP00000051_1.0 # Protein # Selenoprotein 15 (Sel15) # Anopheles gambiae # Complete
        Target: scaffold_5:subseq(1865605,6224) [revcomp]
         Model: protein2genome
     Raw score: 159
   Query range: 24 -> 149
  Target range: 3191 -> 2828

   25 : AspCysArgGluLeuGlyLeuIleLysSerGlnLeuPheCysSerSerCysSerSerLeu<- :   45
        ||||||! !|||  !|||!!!!    !|||   |||  !||||||||||||:!!!.!|||  
        AspCysLeuGluAlaGlyPheThrAlaSer---LeuArgCysSerSerCysAlaLysLeuGl
 3191 : GACTGCCTCGAGGCCGGCTTCACGGCGTCG---CTGCGCTGCTCGTCCTGCGCGAAGCTCGA : 3134

   46 : >SerAspTyrGlyLeuIleGluLeuLysGluHisCysLeuGluCysCysGlnLysAspThrG :   65
         |||  !  !  !  !  !||||||   !   !!|||  !!  ||||||...:!!|||  !.
        uSerLeuValProAspProGluLeuAlaAlaAspCysGlyAlaCysCysSerGluAspLeuS
 3133 : GAGCCTCGTCCCGGATCCCGAGCTCGCCGCCGACTGCGGCGCCTGCTGCAGCGAGGACCTGA : 3071

   66 : luAlaAspSerLysLeuLysValTyrProAlaAlaValLeuGluValCysThrCysLysPhe :   85
        ..|||...:!!!..         ||| !!:!!|||:!!||||||||||||  !!! |||.!.
        erAlaSerAlaSer---------TyrAlaSerAlaIleLeuGluValCysGlu***LysLeu
 3070 : GCGCCTCGGCGAGC---------TACGCGTCGGCGATTCTCGAGGTCTGCGAGTGAAAGCTG : 3020

   86 : GlyAlaTyrProGlnIleGlnAlaPheIleLysSerAspArgProAlaLysPheProAsnLe :  106
        |||  !||||||   |||   ! !||||||:!! !!   |||  !! !!  !:!  !::!||
        GlyHisTyrProAlaIleGlyAspPheIleGluArg---ArgSerAspThrTyrGlySerLe
 3019 : GGCCACTACCCGGCCATCGGCGACTTCATCGAGCGG---CGGAGCGATACCTACGGGTCCCT : 2960

  107 : uThrIleLysTyrValArgGlyLeuAspProIleValLysLeuMetAspGluGlnGlyAsnV :  127
        |  !:!::::|||  !!:!|||! ! ! |||   :!!  !:!!:!:|||!!:.!.|||.!.|
        uAspValArgTyrLysGlnGlyGlnLysProArgLeuLeuMetValAspAspAspGlyGluV
 2959 : CGACGTGCGCTACAAGCAGGGCCAGAAGCCGCGGCTGCTGATGGTCGACGACGACGGCGAGG : 2897

  128 : alLysGluThrLeuSerIleAsnLysTrpAsnThrAspThrValGlnGluPhePheGluThr :  147
        ||  !||||||:!! !!|||..!   ||||||  !|||||||||   |||!:!.!!!!:  !
        alAlaGluThrValProIleGlyGlyTrpAsnGluAspThrValAlaGluTyrLeuAspAsp
 2896 : TCGCGGAGACGGTGCCCATCGGCGGCTGGAACGAGGACACCGTCGCCGAGTACCTCGACGAC : 2837

  148 : ArgLeu :  149
        !.!|||
        AsnLeu
 2836 : AACCTC : 2829

vulgar: SPP00000051_1.0 24 149 . scaffold_5:subseq(1865605,6224) 3191 2828 - 159 M 10 30 G 1 0 M 9 27 G 0 3 M 25 75 G 3 0 M 25 75 G 1 0 M 51 153
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome 1.4.0
##date 2009-02-24
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
scaffold_5:subseq(1865605,6224)	exonerate:protein2genome	gene	2829	3191	159	-	.	gene_id 1 ; sequence SPP00000051_1.0 ; gene_orientation .
scaffold_5:subseq(1865605,6224)	exonerate:protein2genome	cds	2829	3191	.	-	.	
scaffold_5:subseq(1865605,6224)	exonerate:protein2genome	exon	2829	3191	.	-	.	insertions 3 ; deletions 5
scaffold_5:subseq(1865605,6224)	exonerate:protein2genome	similarity	2829	3191	159	-	.	alignment_id 1 ; Query SPP00000051_1.0 ; Align 3192 25 30 ; Align 3162 36 27 ; Align 3132 45 75 ; Align 3057 73 75 ; Align 2982 99 153
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis
