Command line: [exonerate -m p2g --showtargetgff -q secp43_salmon.fa -t secp43/secp43homo_scaffold14_seqDNA.fa]
Hostname: [localhost]

C4 Alignment:
------------
         Query: gi|209735818|gb|ACI68778.1| tRNA selenocysteine-associated protein 1 [Salmo salar]
        Target: scaffold_14:subseq(65095,6593)
         Model: protein2genome
     Raw score: 102
   Query range: 94 -> 175
  Target range: 3335 -> 3578

   95 : TyrSerLeuPheValGlyAspLeuThrProGluValAspAspGlyMetLeuTyrGluPhePh :  115
        !::|||:!!|||||||||||||||  !  !  !|||   !!:  !..!|||:!!!    !||
        TrpSerIlePheValGlyAspLeuAspTyrThrValThrGluGlnGlnLeuHisGlyAlaPh
 3336 : TGGTCCATCTTCGTGGGGGACCTGGACTACACGGTCACGGAGCAGCAGCTCCACGGCGCCTT : 3396

  116 : eTyrAsnArgTyrProSerCysArgGlyGlyLysValValLeuAsp<->GlyThrGlyAsnS :  135
        |   !!.!:!|||! !|||  !! !.!!  !|||:!!|||:!!|||   ..!||||||  !|
        eAlaLysLysTyrArgSerIleLeuSerThrLysLeuValIleAspMetSerThrGlyLeuS
 3397 : CGCGAAGAAGTACCGGAGCATCCTCAGCACGAAGCTCGTCATCGACATGTCCACGGGCCTCT : 3459

  136 : erLysGlyCysGlyPheValGlnPheProAspGlnArgLeuGlnLysLeuAlaLeuGluGlu :  155
        ||||||||! !||||||:!!:!!|||  !..!:!!  !  !!:: ! ! !|||:!!.!.|||
        erLysGlyPheGlyPheIleLysPheGlySerGluAlaGluArgAspSerAlaMetAsnGlu
 3460 : CCAAGGGCTTTGGGTTCATCAAGTTCGGCTCCGAGGCCGAGCGCGACTCCGCGATGAACGAG : 3519

  156 : CysGlnGlyAlaValGlyLeuGlySerLysProLeuArgLeuSerLeuAlaAlaAsnLys :  175
           !!.|||  !  !   :!!|||..!::: !!:!!|||! !!!!||||||.!!!..:::
        MetHisGlyGlnTyr---ValGlyGluArgAlaIleArgCysThrLeuAlaThrThrArg
 3520 : ATGCACGGCCAGTAC---GTCGGCGAGCGCGCCATCCGCTGCACGCTCGCGACGACGCGC : 3578

vulgar: gi|209735818|gb|ACI68778.1| 94 175 . scaffold_14:subseq(65095,6593) 3335 3578 + 102 M 36 108 G 0 3 M 30 90 G 1 0 M 14 42
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome 1.4.0
##date 2009-03-17
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
scaffold_14:subseq(65095,6593)	exonerate:protein2genome	gene	3336	3578	102	+	.	gene_id 1 ; sequence gi|209735818|gb|ACI68778.1| ; gene_orientation .
scaffold_14:subseq(65095,6593)	exonerate:protein2genome	cds	3336	3578	.	+	.	
scaffold_14:subseq(65095,6593)	exonerate:protein2genome	exon	3336	3578	.	+	.	insertions 3 ; deletions 1
scaffold_14:subseq(65095,6593)	exonerate:protein2genome	similarity	3336	3578	102	+	.	alignment_id 1 ; Query gi|209735818|gb|ACI68778.1| ; Align 3336 95 108 ; Align 3447 131 90 ; Align 3537 162 42
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis
