Command line: [exonerate -m p2g --showtargetgff -q ./Seq.aa.proteines/MsrA.fa -t ProtDNASeq/msra_scaffold41_seqDNA.fa]
Hostname: [localhost]

C4 Alignment:
------------
         Query: SPP00000050_1.0 # Protein # Methionine sulfoxide reductase A2 (MsrA2) # Anopheles gambiae # Complete
        Target: scaffold_41:subseq(203369,6434)
         Model: protein2genome
     Raw score: 137
   Query range: 28 -> 131
  Target range: 3062 -> 3368

   29 : PheGluLysAlaThrPheGlyMetGlyCysPheTrpGlyCysAspSerLeuPheGlyAlaTh :   49
        .!!|||   |||||| !!!.!:!:|||!! ||||||! !  !   :!!|||.!! !!|||||
        LeuGluValAlaThrValAlaLeuGly***PheTrpGluProProAlaLeuLeuArgAlaTh
 3063 : CTCGAGGTCGCGACGGTCGCCCTCGGCTGATTCTGGGAGCCTCCGGCGCTGCTCCGGGCGAC : 3123

   50 : r<->LysGlyValLeuArgThrArgValGlyTyrAlaGlyGlySerThrGluSerProAlaT :   69
        |      ||||||  !  !|||! !|||||||||..!|||||| !!.!!  !!!!|||.!!|
        rHisAlaGlyValAlaAlaThrThrValGlyTyrCysGlyGlyArgAlaProTrpProThrT
 3124 : GCACGCCGGCGTGGCGGCCACGACCGTCGGCTACTGCGGCGGCCGCGCGCCGTGGCCGACGT : 3186

   70 : yrLysLysMetGlyAspHisThrGluValIleGluIleAspTyrAspProGlnThrIleSer :   89
        ||  ! ! ||||||||||||||||||!.!:!!:!!:!!   |||||||||   ..!!  !!!
        yrGlyAspMetGlyAspHisThrGluAlaValGlnValLeuTyrAspProGlyValThrThr
 3187 : ACGGGGACATGGGCGACCACACGGAGGCCGTCCAGGTCCTGTACGACCCCGGCGTCACGACC : 3246

   90 : TyrIleAspLeuLeuAspLeuPheTrpAsnAsnHisGluTyrGlyLeuThrThrArgMetLy :  110
        !:!  !|||:!!|||   !!! !!  !   !:!  !      |||! !!.!  !  !..!! 
        PheAspAspIleLeuArgPheValLeuProSerGly------GlyArgAsnArgSerGlnTh
 3247 : TTCGACGACATCCTCAGATTTGTCCTGCCGAGCGGC------GGGCGGAACCGGTCGCAGAC : 3303

  111 : sArgGlnTyrMetSerLeuIleLeuTyrHisAsnGluGlnGlnArgGlnIleAlaGluAlaS :  131
        !||||||||||||!!!  !:!!! !  !|||!..!!:  !|||  !     !!.!!  |||:
        rArgGlnTyrMetThrAlaValTrpProHisThrAspAlaGlnAlaAlaAlaValAlaAlaA
 3304 : GCGCCAGTACATGACCGCCGTCTGGCCCCACACGGACGCGCAGGCGGCCGCCGTCGCCGCGG : 3366

  132 : er :  131
        !!
        la
 3367 : CG : 3368

vulgar: SPP00000050_1.0 28 131 . scaffold_41:subseq(203369,6434) 3062 3368 + 137 M 21 63 G 0 3 M 52 156 G 2 0 M 28 84
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome 1.4.0
##date 2009-02-25
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
scaffold_41:subseq(203369,6434)	exonerate:protein2genome	gene	3063	3368	137	+	.	gene_id 1 ; sequence SPP00000050_1.0 ; gene_orientation .
scaffold_41:subseq(203369,6434)	exonerate:protein2genome	cds	3063	3368	.	+	.	
scaffold_41:subseq(203369,6434)	exonerate:protein2genome	exon	3063	3368	.	+	.	insertions 3 ; deletions 2
scaffold_41:subseq(203369,6434)	exonerate:protein2genome	similarity	3063	3368	137	+	.	alignment_id 1 ; Query SPP00000050_1.0 ; Align 3063 29 63 ; Align 3129 50 156 ; Align 3285 104 84
# --- END OF GFF DUMP ---
#

C4 Alignment:
------------
         Query: SPP00000049_1.0 # Protein # Methionine sulfoxide reductase A1 (MsrA1) # Anopheles gambiae # Complete
        Target: scaffold_41:subseq(203369,6434)
         Model: protein2genome
     Raw score: 141
   Query range: 28 -> 131
  Target range: 3062 -> 3368

   29 : PheGluLysAlaThrPheGlyMetGlyCysPheTrpGlyCysAspSerLeuPheGlyAlaTh :   49
        .!!|||   |||||| !!!.!:!:|||!! ||||||! !  !   :!!|||.!! !!|||||
        LeuGluValAlaThrValAlaLeuGly***PheTrpGluProProAlaLeuLeuArgAlaTh
 3063 : CTCGAGGTCGCGACGGTCGCCCTCGGCTGATTCTGGGAGCCTCCGGCGCTGCTCCGGGCGAC : 3123

   50 : r<->LysGlyValLeuArgThrArgValGlyTyrAlaGlyGlySerThrGluSerProAlaT :   69
        |      ||||||  !  !|||! !|||||||||..!|||||| !!.!!  !!!!|||.!!|
        rHisAlaGlyValAlaAlaThrThrValGlyTyrCysGlyGlyArgAlaProTrpProThrT
 3124 : GCACGCCGGCGTGGCGGCCACGACCGTCGGCTACTGCGGCGGCCGCGCGCCGTGGCCGACGT : 3186

   70 : yrLysLysMetGlyAspHisThrGluValIleGluIleAspTyrAspProGlnThrIleSer :   89
        ||  ! ! ||||||||||||||||||!.!:!!:!!:!!   |||||||||   ..!!  !!!
        yrGlyAspMetGlyAspHisThrGluAlaValGlnValLeuTyrAspProGlyValThrThr
 3187 : ACGGGGACATGGGCGACCACACGGAGGCCGTCCAGGTCCTGTACGACCCCGGCGTCACGACC : 3246

   90 : TyrAsnAspLeuLeuAspLeuPheTrpAsnAsnHisGluTyrGlyLeuThrThrArgMetLy :  110
        !:!:!!|||:!!|||   !!! !!  !   !:!  !      |||! !!.!  !  !..!! 
        PheAspAspIleLeuArgPheValLeuProSerGly------GlyArgAsnArgSerGlnTh
 3247 : TTCGACGACATCCTCAGATTTGTCCTGCCGAGCGGC------GGGCGGAACCGGTCGCAGAC : 3303

  111 : sArgGlnTyrMetSerLeuIleLeuTyrHisAsnGluGlnGlnArgGlnIleAlaGluAlaS :  131
        !||||||||||||!!!  !:!!! !  !|||!..!!:  !|||  !     !!.!!  |||:
        rArgGlnTyrMetThrAlaValTrpProHisThrAspAlaGlnAlaAlaAlaValAlaAlaA
 3304 : GCGCCAGTACATGACCGCCGTCTGGCCCCACACGGACGCGCAGGCGGCCGCCGTCGCCGCGG : 3366

  132 : er :  131
        !!
        la
 3367 : CG : 3368

vulgar: SPP00000049_1.0 28 131 . scaffold_41:subseq(203369,6434) 3062 3368 + 141 M 21 63 G 0 3 M 52 156 G 2 0 M 28 84
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome 1.4.0
##date 2009-02-25
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
scaffold_41:subseq(203369,6434)	exonerate:protein2genome	gene	3063	3368	141	+	.	gene_id 1 ; sequence SPP00000049_1.0 ; gene_orientation .
scaffold_41:subseq(203369,6434)	exonerate:protein2genome	cds	3063	3368	.	+	.	
scaffold_41:subseq(203369,6434)	exonerate:protein2genome	exon	3063	3368	.	+	.	insertions 3 ; deletions 2
scaffold_41:subseq(203369,6434)	exonerate:protein2genome	similarity	3063	3368	141	+	.	alignment_id 1 ; Query SPP00000049_1.0 ; Align 3063 29 63 ; Align 3129 50 156 ; Align 3285 104 84
# --- END OF GFF DUMP ---
#

C4 Alignment:
------------
         Query: SPP00000039_1.0 # Protein # Methionine sulfoxide reductase A (MsrA) # Drosophila melanogaster # Complete
        Target: scaffold_41:subseq(203369,6434)
         Model: protein2genome
     Raw score: 150
   Query range: 40 -> 104
  Target range: 3068 -> 3263

   41 : ThrAlaThrPheGlyMetGlyCysPheTrpGlyAlaGluSerLeuTyrGlyAlaThrArg<- :   61
        ..!|||||| !!!.!:!:|||!! ||||||! ! !!  !:!!|||  ! !!||||||!.!  
        ValAlaThrValAlaLeuGly***PheTrpGluProProAlaLeuLeuArgAlaThrHisAl
 3069 : GTCGCGACGGTCGCCCTCGGCTGATTCTGGGAGCCTCCGGCGCTGCTCCGGGCGACGCACGC : 3129

   62 : >GlyValLeuArgThrThrValGlyTyrAlaGlyGlySerSerAspLeuProThrTyrArgL :   81
         ||||||  !  !|||||||||||||||..!|||||| !!:!!   ! !||||||||| !! 
        aGlyValAlaAlaThrThrValGlyTyrCysGlyGlyArgAlaProTrpProThrTyrGlyA
 3130 : CGGCGTGGCGGCCACGACCGTCGGCTACTGCGGCGGCCGCGCGCCGTGGCCGACGTACGGGG : 3192

   82 : ysMetGlyAspHisThrGluValLeuGluIleAspTyrAspProThrValIleSerPheLys :  101
        ! ||||||||||||||||||!.!:!!:!!:!!   |||||||||  !|||!  !!!||| ! 
        spMetGlyAspHisThrGluAlaValGlnValLeuTyrAspProGlyValThrThrPheAsp
 3193 : ACATGGGCGACCACACGGAGGCCGTCCAGGTCCTGTACGACCCCGGCGTCACGACCTTCGAC : 3252

  102 : GluLeuLeu :  104
        !!::!!|||
        AspIleLeu
 3253 : GACATCCTC : 3263

vulgar: SPP00000039_1.0 40 104 . scaffold_41:subseq(203369,6434) 3068 3263 + 150 M 20 60 G 0 3 M 44 132
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome 1.4.0
##date 2009-02-25
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
scaffold_41:subseq(203369,6434)	exonerate:protein2genome	gene	3069	3263	150	+	.	gene_id 1 ; sequence SPP00000039_1.0 ; gene_orientation .
scaffold_41:subseq(203369,6434)	exonerate:protein2genome	cds	3069	3263	.	+	.	
scaffold_41:subseq(203369,6434)	exonerate:protein2genome	exon	3069	3263	.	+	.	insertions 3 ; deletions 0
scaffold_41:subseq(203369,6434)	exonerate:protein2genome	similarity	3069	3263	150	+	.	alignment_id 1 ; Query SPP00000039_1.0 ; Align 3069 41 60 ; Align 3132 61 132
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis
