Command line: [exonerate -m p2g --showtargetgff -q Gpx.fa -t scaffolds_tallats/gpx_scaffold6.1_seqDNA.fa]
Hostname: [localhost]

C4 Alignment:
------------
         Query: (GPx3)Mus musculus # Complete
        Target: scaffold_6:subseq(1230345,6458)
         Model: protein2genome
     Raw score: 179
   Query range: 93 -> 152
  Target range: 3187 -> 3364

   94 : LeuGlyPheProSerAsnGlnPheGlyLysGlnGluProGlyGluAsnSerGluIleLeuPr :  114
        ||||||||||||!!!||||||||||||||||||  !  !! !:!!:!!!!!|||:!:|||||
        LeuGlyPheProThrAsnGlnPheGlyLysGlnThrAsnGluLysAspTrpGluLeuLeuPr
 3188 : CTCGGCTTCCCGACGAACCAGTTCGGGAAGCAGACGAACGAGAAGGACTGGGAGCTGCTGCC : 3248

  115 : oSerLeuLysTyrValArgProGlyGlyGlyPheValProAsnPheGlnLeuPheGluLysG :  135
        |! !|||  !:!!|||||||||||||||||||||||||||||||||!  :!!|||   ||| 
        oMetLeuAlaHisValArgProGlyGlyGlyPheValProAsnPheProIlePheThrLysT
 3249 : CATGCTCGCGCACGTGCGCCCCGGCGGCGGCTTCGTGCCCAACTTCCCCATCTTCACCAAGA : 3311

  136 : lyAspValAsnGlyGluLysGluGlnLysPheTyrThrPheLeuLysAsnSer :  152
         !!!:!.!|||||||||   ! !..! ! .!.!:!! !||||||::!:::|||
        hrGluAlaAsnGlyGluGlyAlaSerAspLeuPheLysPheLeuArgSerSer
 3312 : CCGAGGCCAACGGCGAGGGCGCGTCGGACCTGTTCAAGTTCCTCCGGTCGTCC : 3364

vulgar: (GPx3)Mus 93 152 . scaffold_6:subseq(1230345,6458) 3187 3364 + 179 M 59 177
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome 1.4.0
##date 2009-03-19
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
scaffold_6:subseq(1230345,6458)	exonerate:protein2genome	gene	3188	3364	179	+	.	gene_id 1 ; sequence (GPx3)Mus ; gene_orientation .
scaffold_6:subseq(1230345,6458)	exonerate:protein2genome	cds	3188	3364	.	+	.	
scaffold_6:subseq(1230345,6458)	exonerate:protein2genome	exon	3188	3364	.	+	.	insertions 0 ; deletions 0
scaffold_6:subseq(1230345,6458)	exonerate:protein2genome	similarity	3188	3364	179	+	.	alignment_id 1 ; Query (GPx3)Mus ; Align 3188 94 177
# --- END OF GFF DUMP ---
#

C4 Alignment:
------------
         Query: (GPx1)Mus musculus # Complete
        Target: scaffold_6:subseq(1230345,6458)
         Model: protein2genome
     Raw score: 292
   Query range: 34 -> 137
  Target range: 3079 -> 3385

   35 : GlyLysValLeuLeuIleGluAsnValAlaSerLeuUnkGlyThrThrIleArgAspTyrTh :   55
        |||:!!|||:!!|||:!:|||||||||||||||:!!   |||||||||:!!||||||!:!||
        GlyGlnValValLeuValGluAsnValAlaSerIle***GlyThrThrValArgAspPheTh
 3080 : GGCCAGGTCGTGCTCGTGGAAAACGTCGCGAGTATCTGAGGCACGACGGTCAGGGACTTCAC : 3140

   56 : rGluMetAsnAspLeuGlnLysArgLeuGlyProArgGlyLeuValValLeuGlyPheProC :   76
        |:!!||||||||||||   :!!!:!!!!!.!  !!:!   !!!..!  !|||||||||||| 
        rGlnMetAsnAspLeuThrGluLysPheAlaGlyLys---PheThrCysLeuGlyPheProT
 3141 : GCAGATGAACGACCTGACCGAGAAATTCGCCGGCAAG---TTCACGTGCCTCGGCTTCCCGA : 3200

   77 : ysAsnGlnPheGlyHisGlnGluAsnGlyLysAsnGluGluIleLeuAsnSerLeuLysTyr :   96
          |||||||||||| ! |||  !|||! !|||:!!  !|||:!:|||  !! !|||  !:!!
        hrAsnGlnPheGlyLysGlnThrAsnGluLysAspTrpGluLeuLeuProMetLeuAlaHis
 3201 : CGAACCAGTTCGGGAAGCAGACGAACGAGAAGGACTGGGAGCTGCTGCCCATGCTCGCGCAC : 3260

   97 : ValArgProGlyGlyGlyPheGluProAsnPheThrLeuPheGluLysCysGluValAsnGl :  117
        |||||||||||||||||||||! !||||||||| !!:!!|||   |||  !|||!.!|||||
        ValArgProGlyGlyGlyPheValProAsnPheProIlePheThrLysThrGluAlaAsnGl
 3261 : GTGCGCCCCGGCGGCGGCTTCGTGCCCAACTTCCCCATCTTCACCAAGACCGAGGCCAACGG : 3323

  118 : yGluLysAlaHisProLeuPheThrPheLeuArgAsnAlaLeuProThrProSerAspAsp :  137
        ||||   |||     !||||||! !|||||||||::::!!|||  !.!!||||||||||||
        yGluGlyAlaSerAspLeuPheLysPheLeuArgSerSerLeuGlyAlaProSerAspAsp
 3324 : CGAGGGCGCGTCGGACCTGTTCAAGTTCCTCCGGTCGTCCCTCGGCGCGCCGAGCGACGAC : 3385

vulgar: (GPx1)Mus 34 137 . scaffold_6:subseq(1230345,6458) 3079 3385 + 292 M 33 99 G 1 0 M 69 207
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome 1.4.0
##date 2009-03-19
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
scaffold_6:subseq(1230345,6458)	exonerate:protein2genome	gene	3080	3385	292	+	.	gene_id 1 ; sequence (GPx1)Mus ; gene_orientation .
scaffold_6:subseq(1230345,6458)	exonerate:protein2genome	cds	3080	3385	.	+	.	
scaffold_6:subseq(1230345,6458)	exonerate:protein2genome	exon	3080	3385	.	+	.	insertions 0 ; deletions 1
scaffold_6:subseq(1230345,6458)	exonerate:protein2genome	similarity	3080	3385	292	+	.	alignment_id 1 ; Query (GPx1)Mus ; Align 3080 35 99 ; Align 3179 69 207
# --- END OF GFF DUMP ---
#

C4 Alignment:
------------
         Query: (GPx1)Mus musculus # Complete
        Target: scaffold_6:subseq(1230345,6458)
         Model: protein2genome
     Raw score: 133
   Query range: 145 -> 194
  Target range: 3421 -> 3642

  146 : LysTyrIleIleTrpSerProValCys{A}  >>>> Target Intron 1 >>>>  {rg :  155
        ||| !!|||||||||!!!||||||   {|}            74 bp            {||
        LysAsnIleIleTrpThrProValThr{A}+-                         ++{rg
 3422 : AAGAACATCATCTGGACGCCCGTGACG{C}gc.........................ag{GC : 3524

  156 : }AsnAspIleAlaTrpAsnPheGluLysPheLeuValGlyProAspGlyValProValArgA :  176
        }!..|||:!!||||||||||||||||||||||||:!!..!! !!!:|||  !||||||!:!|
        }ThrAspLeuAlaTrpAsnPheGluLysPheLeuIleAsnGlnGluGlyLysProValLysA
 3525 : }ACGGACCTCGCCTGGAACTTCGAGAAGTTCCTCATCAACCAGGAGGGCAAGCCCGTGAAGC : 3586

  177 : rgTyrSerArgArgPheArgThrIleAspIleGluProAspIleGluThrLeuLeu :  194
        ||||||||! ! !!|||! !|||   |||:!!!   !!|||:!!|||.!!||||||
        rgTyrSerProGlyPheLeuThrAlaAspValAlaAlaAspValGluAlaLeuLeu
 3587 : GCTACTCGCCGGGCTTCCTGACCGCGGACGTCGCCGCGGACGTCGAGGCCCTCCTC : 3642

vulgar: (GPx1)Mus 145 194 . scaffold_6:subseq(1230345,6458) 3421 3642 + 133 M 9 27 S 0 1 5 0 2 I 0 70 3 0 2 S 1 2 M 39 117
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome 1.4.0
##date 2009-03-19
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
scaffold_6:subseq(1230345,6458)	exonerate:protein2genome	gene	3422	3642	133	+	.	gene_id 2 ; sequence (GPx1)Mus ; gene_orientation +
scaffold_6:subseq(1230345,6458)	exonerate:protein2genome	cds	3422	3449	.	+	.	
scaffold_6:subseq(1230345,6458)	exonerate:protein2genome	exon	3422	3449	.	+	.	insertions 0 ; deletions 0
scaffold_6:subseq(1230345,6458)	exonerate:protein2genome	splice5	3450	3451	.	+	.	intron_id 1 ; splice_site "GC"
scaffold_6:subseq(1230345,6458)	exonerate:protein2genome	intron	3450	3523	.	+	.	intron_id 1
scaffold_6:subseq(1230345,6458)	exonerate:protein2genome	splice3	3522	3523	.	+	.	intron_id 0 ; splice_site "AG"
scaffold_6:subseq(1230345,6458)	exonerate:protein2genome	cds	3524	3642	.	+	.	
scaffold_6:subseq(1230345,6458)	exonerate:protein2genome	exon	3524	3642	.	+	.	insertions 0 ; deletions 0
scaffold_6:subseq(1230345,6458)	exonerate:protein2genome	similarity	3422	3642	133	+	.	alignment_id 2 ; Query (GPx1)Mus ; Align 3422 146 27 ; Align 3526 156 117
# --- END OF GFF DUMP ---
#

C4 Alignment:
------------
         Query: (GPx2)Pan troglodytes # Complete
        Target: scaffold_6:subseq(1230345,6458)
         Model: protein2genome
     Raw score: 255
   Query range: 27 -> 129
  Target range: 3079 -> 3385

   28 : GlyArgAlaValLeuIleGluAsnValAlaSerLeuUnkGlyThrThrThrArgAspPheTh :   48
        |||!:!!.!||||||:!:|||||||||||||||:!!   |||||||||..!|||||||||||
        GlyGlnValValLeuValGluAsnValAlaSerIle***GlyThrThrValArgAspPheTh
 3080 : GGCCAGGTCGTGCTCGTGGAAAACGTCGCGAGTATCTGAGGCACGACGGTCAGGGACTTCAC : 3140

   49 : rGlnLeuAsnGluLeuGlnCysArgPheProArgArgLeuValValLeuGlyPheProCysA :   69
        ||||:!!|||!!:|||      !:!||| !! !!!:!!!!..!  !||||||||||||   |
        rGlnMetAsnAspLeuThrGluLysPheAlaGlyLysPheThrCysLeuGlyPheProThrA
 3141 : GCAGATGAACGACCTGACCGAGAAATTCGCCGGCAAGTTCACGTGCCTCGGCTTCCCGACGA : 3203

   70 : snGlnPheGlyHisGlnGluAsnCysGlnAsnGluGluIleLeuAsnSerLeuLysTyrVal :   89
        ||||||||||| ! |||  !|||   :!!:!!  !|||:!:|||  !! !|||  !:!!|||
        snGlnPheGlyLysGlnThrAsnGluLysAspTrpGluLeuLeuProMetLeuAlaHisVal
 3204 : ACCAGTTCGGGAAGCAGACGAACGAGAAGGACTGGGAGCTGCTGCCCATGCTCGCGCACGTG : 3263

   90 : ArgProGlyGlyGlyTyrGlnProThrPheThrLeuValGlnLysCysGluValAsnGlyGl :  110
        |||||||||||||||!:!  !|||!.!||| !!:!! !!   |||  !|||!.!||||||:!
        ArgProGlyGlyGlyPheValProAsnPheProIlePheThrLysThrGluAlaAsnGlyGl
 3264 : CGCCCCGGCGGCGGCTTCGTGCCCAACTTCCCCATCTTCACCAAGACCGAGGCCAACGGCGA : 3326

  111 : nAsnGluHisProLysPheAlaTyrLeuLysAspLysLeuProTyrProTyrAspAsp :  129
        !..!! !     !  !|||  !!:!|||::!......|||  !   |||  !||||||
        uGlyAlaSerAspLeuPheLysPheLeuArgSerSerLeuGlyAlaProSerAspAsp
 3327 : GGGCGCGTCGGACCTGTTCAAGTTCCTCCGGTCGTCCCTCGGCGCGCCGAGCGACGAC : 3385

vulgar: (GPx2)Pan 27 129 . scaffold_6:subseq(1230345,6458) 3079 3385 + 255 M 102 306
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome 1.4.0
##date 2009-03-19
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
scaffold_6:subseq(1230345,6458)	exonerate:protein2genome	gene	3080	3385	255	+	.	gene_id 1 ; sequence (GPx2)Pan ; gene_orientation .
scaffold_6:subseq(1230345,6458)	exonerate:protein2genome	cds	3080	3385	.	+	.	
scaffold_6:subseq(1230345,6458)	exonerate:protein2genome	exon	3080	3385	.	+	.	insertions 0 ; deletions 0
scaffold_6:subseq(1230345,6458)	exonerate:protein2genome	similarity	3080	3385	255	+	.	alignment_id 1 ; Query (GPx2)Pan ; Align 3080 28 306
# --- END OF GFF DUMP ---
#

C4 Alignment:
------------
         Query: (GPx2)Pan troglodytes # Complete
        Target: scaffold_6:subseq(1230345,6458)
         Model: protein2genome
     Raw score: 124
   Query range: 137 -> 187
  Target range: 3421 -> 3645

  138 : LysLeuIleIleTrpSerProValArg{A}  >>>> Target Intron 1 >>>>  {rg :  147
        |||  !|||||||||!!!||||||! !{|}            74 bp            {||
        LysAsnIleIleTrpThrProValThr{A}+-                         ++{rg
 3422 : AAGAACATCATCTGGACGCCCGTGACG{C}gc.........................ag{GC : 3524

  148 : }SerAspValAlaTrpAsnPheGluLysPheLeuIleGlyProGluGlyGluProPheArgA :  168
        }!!!|||:!!|||||||||||||||||||||||||||..!! !||||||:!!||| ! !:!|
        }ThrAspLeuAlaTrpAsnPheGluLysPheLeuIleAsnGlnGluGlyLysProValLysA
 3525 : }ACGGACCTCGCCTGGAACTTCGAGAAGTTCCTCATCAACCAGGAGGGCAAGCCCGTGAAGC : 3586

  169 : rgTyrSerArgThrPheProThrIleAsnIleGluProAspIleLysArgLeuLeuLys :  187
        ||||||||! !  !|||! !|||   :!!:!!!   !!|||:!!:!!  !||||||:!!
        rgTyrSerProGlyPheLeuThrAlaAspValAlaAlaAspValGluAlaLeuLeuGlu
 3587 : GCTACTCGCCGGGCTTCCTGACCGCGGACGTCGCCGCGGACGTCGAGGCCCTCCTCGAG : 3645

vulgar: (GPx2)Pan 137 187 . scaffold_6:subseq(1230345,6458) 3421 3645 + 124 M 9 27 S 0 1 5 0 2 I 0 70 3 0 2 S 1 2 M 40 120
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome 1.4.0
##date 2009-03-19
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
scaffold_6:subseq(1230345,6458)	exonerate:protein2genome	gene	3422	3645	124	+	.	gene_id 2 ; sequence (GPx2)Pan ; gene_orientation +
scaffold_6:subseq(1230345,6458)	exonerate:protein2genome	cds	3422	3449	.	+	.	
scaffold_6:subseq(1230345,6458)	exonerate:protein2genome	exon	3422	3449	.	+	.	insertions 0 ; deletions 0
scaffold_6:subseq(1230345,6458)	exonerate:protein2genome	splice5	3450	3451	.	+	.	intron_id 1 ; splice_site "GC"
scaffold_6:subseq(1230345,6458)	exonerate:protein2genome	intron	3450	3523	.	+	.	intron_id 1
scaffold_6:subseq(1230345,6458)	exonerate:protein2genome	splice3	3522	3523	.	+	.	intron_id 0 ; splice_site "AG"
scaffold_6:subseq(1230345,6458)	exonerate:protein2genome	cds	3524	3645	.	+	.	
scaffold_6:subseq(1230345,6458)	exonerate:protein2genome	exon	3524	3645	.	+	.	insertions 0 ; deletions 0
scaffold_6:subseq(1230345,6458)	exonerate:protein2genome	similarity	3422	3645	124	+	.	alignment_id 2 ; Query (GPx2)Pan ; Align 3422 138 27 ; Align 3526 148 120
# --- END OF GFF DUMP ---
#

C4 Alignment:
------------
         Query: (GPx1)Pan troglodytes # Complete
        Target: scaffold_6:subseq(1230345,6458)
         Model: protein2genome
     Raw score: 296
   Query range: 34 -> 137
  Target range: 3079 -> 3385

   35 : GlyLysValLeuLeuIleGluAsnValAlaSerLeuUnkGlyThrThrValArgAspTyrTh :   55
        |||:!!|||:!!|||:!:|||||||||||||||:!!   ||||||||||||||||||!:!||
        GlyGlnValValLeuValGluAsnValAlaSerIle***GlyThrThrValArgAspPheTh
 3080 : GGCCAGGTCGTGCTCGTGGAAAACGTCGCGAGTATCTGAGGCACGACGGTCAGGGACTTCAC : 3140

   56 : rGlnMetAsnGluLeuGlnArgArgLeuGlyProArgGlyLeuValValLeuGlyPheProC :   76
        ||||||||||!!:|||   ..!!:!!!!!.!  !!:!   !!!..!  !|||||||||||| 
        rGlnMetAsnAspLeuThrGluLysPheAlaGlyLys---PheThrCysLeuGlyPheProT
 3141 : GCAGATGAACGACCTGACCGAGAAATTCGCCGGCAAG---TTCACGTGCCTCGGCTTCCCGA : 3200

   77 : ysAsnGlnPheGlyHisGlnGluAsnAlaLysAsnGluGluIleLeuAsnSerLeuLysTyr :   96
          |||||||||||| ! |||  !|||! !|||:!!  !|||:!:|||  !! !|||  !:!!
        hrAsnGlnPheGlyLysGlnThrAsnGluLysAspTrpGluLeuLeuProMetLeuAlaHis
 3201 : CGAACCAGTTCGGGAAGCAGACGAACGAGAAGGACTGGGAGCTGCTGCCCATGCTCGCGCAC : 3260

   97 : ValArgProGlyGlyGlyPheGluProAsnPheMetLeuPheGluLysCysGluValAsnGl :  117
        |||||||||||||||||||||! !|||||||||   :!!|||   |||  !|||!.!|||||
        ValArgProGlyGlyGlyPheValProAsnPheProIlePheThrLysThrGluAlaAsnGl
 3261 : GTGCGCCCCGGCGGCGGCTTCGTGCCCAACTTCCCCATCTTCACCAAGACCGAGGCCAACGG : 3323

  118 : yAlaGlyAlaHisProLeuPheAlaPheLeuArgGluAlaLeuProAlaProSerAspAsp :  137
        |! !||||||     !||||||  !|||||||||..!:!!|||  !|||||||||||||||
        yGluGlyAlaSerAspLeuPheLysPheLeuArgSerSerLeuGlyAlaProSerAspAsp
 3324 : CGAGGGCGCGTCGGACCTGTTCAAGTTCCTCCGGTCGTCCCTCGGCGCGCCGAGCGACGAC : 3385

vulgar: (GPx1)Pan 34 137 . scaffold_6:subseq(1230345,6458) 3079 3385 + 296 M 33 99 G 1 0 M 69 207
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome 1.4.0
##date 2009-03-19
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
scaffold_6:subseq(1230345,6458)	exonerate:protein2genome	gene	3080	3385	296	+	.	gene_id 1 ; sequence (GPx1)Pan ; gene_orientation .
scaffold_6:subseq(1230345,6458)	exonerate:protein2genome	cds	3080	3385	.	+	.	
scaffold_6:subseq(1230345,6458)	exonerate:protein2genome	exon	3080	3385	.	+	.	insertions 0 ; deletions 1
scaffold_6:subseq(1230345,6458)	exonerate:protein2genome	similarity	3080	3385	296	+	.	alignment_id 1 ; Query (GPx1)Pan ; Align 3080 35 99 ; Align 3179 69 207
# --- END OF GFF DUMP ---
#

C4 Alignment:
------------
         Query: (GPx1)Pan troglodytes # Complete
        Target: scaffold_6:subseq(1230345,6458)
         Model: protein2genome
     Raw score: 138
   Query range: 155 -> 198
  Target range: 3525 -> 3654

  156 : AsnAspValAlaTrpAsnPheGluLysPheLeuValGlyProAspGlyValProLeuArgAr :  176
        !..|||:!!||||||||||||||||||||||||:!!..!! !!!:|||  !|||:!!!:!||
        ThrAspLeuAlaTrpAsnPheGluLysPheLeuIleAsnGlnGluGlyLysProValLysAr
 3526 : ACGGACCTCGCCTGGAACTTCGAGAAGTTCCTCATCAACCAGGAGGGCAAGCCCGTGAAGCG : 3586

  177 : gTyrSerArgArgPheGlnThrIleAspIleGluProAspIleGluAlaLeuLeuSerGlnG :  197
        |||||||! ! !!|||! !|||   |||:!!!   !!|||:!!||||||||||||..!!!.|
        gTyrSerProGlyPheLeuThrAlaAspValAlaAlaAspValGluAlaLeuLeuGluHisG
 3587 : CTACTCGCCGGGCTTCCTGACCGCGGACGTCGCCGCGGACGTCGAGGCCCTCCTCGAGCACG : 3649

  198 : lyPro :  198
        |||||
        lyPro
 3650 : GCCCC : 3654

vulgar: (GPx1)Pan 155 198 . scaffold_6:subseq(1230345,6458) 3525 3654 + 138 M 43 129
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome 1.4.0
##date 2009-03-19
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
scaffold_6:subseq(1230345,6458)	exonerate:protein2genome	gene	3526	3654	138	+	.	gene_id 2 ; sequence (GPx1)Pan ; gene_orientation .
scaffold_6:subseq(1230345,6458)	exonerate:protein2genome	cds	3526	3654	.	+	.	
scaffold_6:subseq(1230345,6458)	exonerate:protein2genome	exon	3526	3654	.	+	.	insertions 0 ; deletions 0
scaffold_6:subseq(1230345,6458)	exonerate:protein2genome	similarity	3526	3654	138	+	.	alignment_id 2 ; Query (GPx1)Pan ; Align 3526 156 129
# --- END OF GFF DUMP ---
#

C4 Alignment:
------------
         Query: (GPx2)Homo sapiens # Complete
        Target: scaffold_6:subseq(1230345,6458)
         Model: protein2genome
     Raw score: 258
   Query range: 27 -> 129
  Target range: 3079 -> 3385

   28 : GlyArgAlaValLeuIleGluAsnValAlaSerLeuUnkGlyThrThrThrArgAspPheTh :   48
        |||!:!!.!||||||:!:|||||||||||||||:!!   |||||||||..!|||||||||||
        GlyGlnValValLeuValGluAsnValAlaSerIle***GlyThrThrValArgAspPheTh
 3080 : GGCCAGGTCGTGCTCGTGGAAAACGTCGCGAGTATCTGAGGCACGACGGTCAGGGACTTCAC : 3140

   49 : rGlnLeuAsnGluLeuGlnCysArgPheProArgArgLeuValValLeuGlyPheProCysA :   69
        ||||:!!|||!!:|||      !:!||| !! !!!:!!!!..!  !||||||||||||   |
        rGlnMetAsnAspLeuThrGluLysPheAlaGlyLysPheThrCysLeuGlyPheProThrA
 3141 : GCAGATGAACGACCTGACCGAGAAATTCGCCGGCAAGTTCACGTGCCTCGGCTTCCCGACGA : 3203

   70 : snGlnPheGlyHisGlnGluAsnCysGlnAsnGluGluIleLeuAsnSerLeuLysTyrVal :   89
        ||||||||||| ! |||  !|||   :!!:!!  !|||:!:|||  !! !|||  !:!!|||
        snGlnPheGlyLysGlnThrAsnGluLysAspTrpGluLeuLeuProMetLeuAlaHisVal
 3204 : ACCAGTTCGGGAAGCAGACGAACGAGAAGGACTGGGAGCTGCTGCCCATGCTCGCGCACGTG : 3263

   90 : ArgProGlyGlyGlyTyrGlnProThrPheThrLeuValGlnLysCysGluValAsnGlyGl :  110
        |||||||||||||||!:!  !|||!.!||| !!:!! !!   |||  !|||!.!||||||:!
        ArgProGlyGlyGlyPheValProAsnPheProIlePheThrLysThrGluAlaAsnGlyGl
 3264 : CGCCCCGGCGGCGGCTTCGTGCCCAACTTCCCCATCTTCACCAAGACCGAGGCCAACGGCGA : 3326

  111 : nAsnGluHisProValPheAlaTyrLeuLysAspLysLeuProTyrProTyrAspAsp :  129
        !..!! !     !:!!|||  !!:!|||::!......|||  !   |||  !||||||
        uGlyAlaSerAspLeuPheLysPheLeuArgSerSerLeuGlyAlaProSerAspAsp
 3327 : GGGCGCGTCGGACCTGTTCAAGTTCCTCCGGTCGTCCCTCGGCGCGCCGAGCGACGAC : 3385

vulgar: (GPx2)Homo 27 129 . scaffold_6:subseq(1230345,6458) 3079 3385 + 258 M 102 306
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome 1.4.0
##date 2009-03-19
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
scaffold_6:subseq(1230345,6458)	exonerate:protein2genome	gene	3080	3385	258	+	.	gene_id 1 ; sequence (GPx2)Homo ; gene_orientation .
scaffold_6:subseq(1230345,6458)	exonerate:protein2genome	cds	3080	3385	.	+	.	
scaffold_6:subseq(1230345,6458)	exonerate:protein2genome	exon	3080	3385	.	+	.	insertions 0 ; deletions 0
scaffold_6:subseq(1230345,6458)	exonerate:protein2genome	similarity	3080	3385	258	+	.	alignment_id 1 ; Query (GPx2)Homo ; Align 3080 28 306
# --- END OF GFF DUMP ---
#

C4 Alignment:
------------
         Query: (GPx2)Homo sapiens # Complete
        Target: scaffold_6:subseq(1230345,6458)
         Model: protein2genome
     Raw score: 124
   Query range: 137 -> 187
  Target range: 3421 -> 3645

  138 : LysLeuIleIleTrpSerProValArg{A}  >>>> Target Intron 1 >>>>  {rg :  147
        |||  !|||||||||!!!||||||! !{|}            74 bp            {||
        LysAsnIleIleTrpThrProValThr{A}+-                         ++{rg
 3422 : AAGAACATCATCTGGACGCCCGTGACG{C}gc.........................ag{GC : 3524

  148 : }SerAspValAlaTrpAsnPheGluLysPheLeuIleGlyProGluGlyGluProPheArgA :  168
        }!!!|||:!!|||||||||||||||||||||||||||..!! !||||||:!!||| ! !:!|
        }ThrAspLeuAlaTrpAsnPheGluLysPheLeuIleAsnGlnGluGlyLysProValLysA
 3525 : }ACGGACCTCGCCTGGAACTTCGAGAAGTTCCTCATCAACCAGGAGGGCAAGCCCGTGAAGC : 3586

  169 : rgTyrSerArgThrPheProThrIleAsnIleGluProAspIleLysArgLeuLeuLys :  187
        ||||||||! !  !|||! !|||   :!!:!!!   !!|||:!!:!!  !||||||:!!
        rgTyrSerProGlyPheLeuThrAlaAspValAlaAlaAspValGluAlaLeuLeuGlu
 3587 : GCTACTCGCCGGGCTTCCTGACCGCGGACGTCGCCGCGGACGTCGAGGCCCTCCTCGAG : 3645

vulgar: (GPx2)Homo 137 187 . scaffold_6:subseq(1230345,6458) 3421 3645 + 124 M 9 27 S 0 1 5 0 2 I 0 70 3 0 2 S 1 2 M 40 120
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome 1.4.0
##date 2009-03-19
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
scaffold_6:subseq(1230345,6458)	exonerate:protein2genome	gene	3422	3645	124	+	.	gene_id 2 ; sequence (GPx2)Homo ; gene_orientation +
scaffold_6:subseq(1230345,6458)	exonerate:protein2genome	cds	3422	3449	.	+	.	
scaffold_6:subseq(1230345,6458)	exonerate:protein2genome	exon	3422	3449	.	+	.	insertions 0 ; deletions 0
scaffold_6:subseq(1230345,6458)	exonerate:protein2genome	splice5	3450	3451	.	+	.	intron_id 1 ; splice_site "GC"
scaffold_6:subseq(1230345,6458)	exonerate:protein2genome	intron	3450	3523	.	+	.	intron_id 1
scaffold_6:subseq(1230345,6458)	exonerate:protein2genome	splice3	3522	3523	.	+	.	intron_id 0 ; splice_site "AG"
scaffold_6:subseq(1230345,6458)	exonerate:protein2genome	cds	3524	3645	.	+	.	
scaffold_6:subseq(1230345,6458)	exonerate:protein2genome	exon	3524	3645	.	+	.	insertions 0 ; deletions 0
scaffold_6:subseq(1230345,6458)	exonerate:protein2genome	similarity	3422	3645	124	+	.	alignment_id 2 ; Query (GPx2)Homo ; Align 3422 138 27 ; Align 3526 148 120
# --- END OF GFF DUMP ---
#

C4 Alignment:
------------
         Query: (GPx1)Homo sapiens # Complete
        Target: scaffold_6:subseq(1230345,6458)
         Model: protein2genome
     Raw score: 296
   Query range: 36 -> 139
  Target range: 3079 -> 3385

   37 : GlyLysValLeuLeuIleGluAsnValAlaSerLeuUnkGlyThrThrValArgAspTyrTh :   57
        |||:!!|||:!!|||:!:|||||||||||||||:!!   ||||||||||||||||||!:!||
        GlyGlnValValLeuValGluAsnValAlaSerIle***GlyThrThrValArgAspPheTh
 3080 : GGCCAGGTCGTGCTCGTGGAAAACGTCGCGAGTATCTGAGGCACGACGGTCAGGGACTTCAC : 3140

   58 : rGlnMetAsnGluLeuGlnArgArgLeuGlyProArgGlyLeuValValLeuGlyPheProC :   78
        ||||||||||!!:|||   ..!!:!!!!!.!  !!:!   !!!..!  !|||||||||||| 
        rGlnMetAsnAspLeuThrGluLysPheAlaGlyLys---PheThrCysLeuGlyPheProT
 3141 : GCAGATGAACGACCTGACCGAGAAATTCGCCGGCAAG---TTCACGTGCCTCGGCTTCCCGA : 3200

   79 : ysAsnGlnPheGlyHisGlnGluAsnAlaLysAsnGluGluIleLeuAsnSerLeuLysTyr :   98
          |||||||||||| ! |||  !|||! !|||:!!  !|||:!:|||  !! !|||  !:!!
        hrAsnGlnPheGlyLysGlnThrAsnGluLysAspTrpGluLeuLeuProMetLeuAlaHis
 3201 : CGAACCAGTTCGGGAAGCAGACGAACGAGAAGGACTGGGAGCTGCTGCCCATGCTCGCGCAC : 3260

   99 : ValArgProGlyGlyGlyPheGluProAsnPheMetLeuPheGluLysCysGluValAsnGl :  119
        |||||||||||||||||||||! !|||||||||   :!!|||   |||  !|||!.!|||||
        ValArgProGlyGlyGlyPheValProAsnPheProIlePheThrLysThrGluAlaAsnGl
 3261 : GTGCGCCCCGGCGGCGGCTTCGTGCCCAACTTCCCCATCTTCACCAAGACCGAGGCCAACGG : 3323

  120 : yAlaGlyAlaHisProLeuPheAlaPheLeuArgGluAlaLeuProAlaProSerAspAsp :  139
        |! !||||||     !||||||  !|||||||||..!:!!|||  !|||||||||||||||
        yGluGlyAlaSerAspLeuPheLysPheLeuArgSerSerLeuGlyAlaProSerAspAsp
 3324 : CGAGGGCGCGTCGGACCTGTTCAAGTTCCTCCGGTCGTCCCTCGGCGCGCCGAGCGACGAC : 3385

vulgar: (GPx1)Homo 36 139 . scaffold_6:subseq(1230345,6458) 3079 3385 + 296 M 33 99 G 1 0 M 69 207
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome 1.4.0
##date 2009-03-19
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
scaffold_6:subseq(1230345,6458)	exonerate:protein2genome	gene	3080	3385	296	+	.	gene_id 1 ; sequence (GPx1)Homo ; gene_orientation .
scaffold_6:subseq(1230345,6458)	exonerate:protein2genome	cds	3080	3385	.	+	.	
scaffold_6:subseq(1230345,6458)	exonerate:protein2genome	exon	3080	3385	.	+	.	insertions 0 ; deletions 1
scaffold_6:subseq(1230345,6458)	exonerate:protein2genome	similarity	3080	3385	296	+	.	alignment_id 1 ; Query (GPx1)Homo ; Align 3080 37 99 ; Align 3179 71 207
# --- END OF GFF DUMP ---
#

C4 Alignment:
------------
         Query: (GPx1)Homo sapiens # Complete
        Target: scaffold_6:subseq(1230345,6458)
         Model: protein2genome
     Raw score: 138
   Query range: 157 -> 200
  Target range: 3525 -> 3654

  158 : AsnAspValAlaTrpAsnPheGluLysPheLeuValGlyProAspGlyValProLeuArgAr :  178
        !..|||:!!||||||||||||||||||||||||:!!..!! !!!:|||  !|||:!!!:!||
        ThrAspLeuAlaTrpAsnPheGluLysPheLeuIleAsnGlnGluGlyLysProValLysAr
 3526 : ACGGACCTCGCCTGGAACTTCGAGAAGTTCCTCATCAACCAGGAGGGCAAGCCCGTGAAGCG : 3586

  179 : gTyrSerArgArgPheGlnThrIleAspIleGluProAspIleGluAlaLeuLeuSerGlnG :  199
        |||||||! ! !!|||! !|||   |||:!!!   !!|||:!!||||||||||||..!!!.|
        gTyrSerProGlyPheLeuThrAlaAspValAlaAlaAspValGluAlaLeuLeuGluHisG
 3587 : CTACTCGCCGGGCTTCCTGACCGCGGACGTCGCCGCGGACGTCGAGGCCCTCCTCGAGCACG : 3649

  200 : lyPro :  200
        |||||
        lyPro
 3650 : GCCCC : 3654

vulgar: (GPx1)Homo 157 200 . scaffold_6:subseq(1230345,6458) 3525 3654 + 138 M 43 129
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome 1.4.0
##date 2009-03-19
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
scaffold_6:subseq(1230345,6458)	exonerate:protein2genome	gene	3526	3654	138	+	.	gene_id 2 ; sequence (GPx1)Homo ; gene_orientation .
scaffold_6:subseq(1230345,6458)	exonerate:protein2genome	cds	3526	3654	.	+	.	
scaffold_6:subseq(1230345,6458)	exonerate:protein2genome	exon	3526	3654	.	+	.	insertions 0 ; deletions 0
scaffold_6:subseq(1230345,6458)	exonerate:protein2genome	similarity	3526	3654	138	+	.	alignment_id 2 ; Query (GPx1)Homo ; Align 3526 158 129
# --- END OF GFF DUMP ---
#

C4 Alignment:
------------
         Query: (GPx2)Mus musculus # Complete
        Target: scaffold_6:subseq(1230345,6458)
         Model: protein2genome
     Raw score: 246
   Query range: 27 -> 129
  Target range: 3079 -> 3385

   28 : GlyArgAlaValLeuIleGluAsnValAlaSerLeuUnkGlyThrThrThrArgAspTyrAs :   48
        |||!:!!.!||||||:!:|||||||||||||||:!!   |||||||||..!||||||!:!!.
        GlyGlnValValLeuValGluAsnValAlaSerIle***GlyThrThrValArgAspPheTh
 3080 : GGCCAGGTCGTGCTCGTGGAAAACGTCGCGAGTATCTGAGGCACGACGGTCAGGGACTTCAC : 3140

   49 : nGlnLeuAsnGluLeuGlnCysArgPheProArgArgLeuValValLeuGlyPheProCysA :   69
        .|||:!!|||!!:|||      !:!||| !! !!!:!!!!..!  !||||||||||||   |
        rGlnMetAsnAspLeuThrGluLysPheAlaGlyLysPheThrCysLeuGlyPheProThrA
 3141 : GCAGATGAACGACCTGACCGAGAAATTCGCCGGCAAGTTCACGTGCCTCGGCTTCCCGACGA : 3203

   70 : snGlnPheGlyHisGlnGluAsnCysGlnAsnGluGluIleLeuAsnSerLeuLysTyrVal :   89
        ||||||||||| ! |||  !|||   :!!:!!  !|||:!:|||  !! !|||  !:!!|||
        snGlnPheGlyLysGlnThrAsnGluLysAspTrpGluLeuLeuProMetLeuAlaHisVal
 3204 : ACCAGTTCGGGAAGCAGACGAACGAGAAGGACTGGGAGCTGCTGCCCATGCTCGCGCACGTG : 3263

   90 : ArgProGlyGlyGlyTyrGlnProThrPheSerLeuThrGlnLysCysAspValAsnGlyGl :  110
        |||||||||||||||!:!  !|||!.!||| !!:!!  !   |||  !!!:!.!||||||:!
        ArgProGlyGlyGlyPheValProAsnPheProIlePheThrLysThrGluAlaAsnGlyGl
 3264 : CGCCCCGGCGGCGGCTTCGTGCCCAACTTCCCCATCTTCACCAAGACCGAGGCCAACGGCGA : 3326

  111 : nAsnGluHisProValPheAlaTyrLeuLysAspLysLeuProTyrProTyrAspAsp :  129
        !..!! !     !:!!|||  !!:!|||::!......|||  !   |||  !||||||
        uGlyAlaSerAspLeuPheLysPheLeuArgSerSerLeuGlyAlaProSerAspAsp
 3327 : GGGCGCGTCGGACCTGTTCAAGTTCCTCCGGTCGTCCCTCGGCGCGCCGAGCGACGAC : 3385

vulgar: (GPx2)Mus 27 129 . scaffold_6:subseq(1230345,6458) 3079 3385 + 246 M 102 306
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome 1.4.0
##date 2009-03-19
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
scaffold_6:subseq(1230345,6458)	exonerate:protein2genome	gene	3080	3385	246	+	.	gene_id 1 ; sequence (GPx2)Mus ; gene_orientation .
scaffold_6:subseq(1230345,6458)	exonerate:protein2genome	cds	3080	3385	.	+	.	
scaffold_6:subseq(1230345,6458)	exonerate:protein2genome	exon	3080	3385	.	+	.	insertions 0 ; deletions 0
scaffold_6:subseq(1230345,6458)	exonerate:protein2genome	similarity	3080	3385	246	+	.	alignment_id 1 ; Query (GPx2)Mus ; Align 3080 28 306
# --- END OF GFF DUMP ---
#

C4 Alignment:
------------
         Query: (GPx2)Mus musculus # Complete
        Target: scaffold_6:subseq(1230345,6458)
         Model: protein2genome
     Raw score: 124
   Query range: 137 -> 187
  Target range: 3421 -> 3645

  138 : LysLeuIleIleTrpSerProValArg{A}  >>>> Target Intron 1 >>>>  {rg :  147
        |||  !|||||||||!!!||||||! !{|}            74 bp            {||
        LysAsnIleIleTrpThrProValThr{A}+-                         ++{rg
 3422 : AAGAACATCATCTGGACGCCCGTGACG{C}gc.........................ag{GC : 3524

  148 : }SerAspValSerTrpAsnPheGluLysPheLeuIleGlyProGluGlyGluProPheArgA :  168
        }!!!|||:!!:!!||||||||||||||||||||||||..!! !||||||:!!||| ! !:!|
        }ThrAspLeuAlaTrpAsnPheGluLysPheLeuIleAsnGlnGluGlyLysProValLysA
 3525 : }ACGGACCTCGCCTGGAACTTCGAGAAGTTCCTCATCAACCAGGAGGGCAAGCCCGTGAAGC : 3586

  169 : rgTyrSerArgSerPheGlnThrIleAsnIleGluProAspIleLysArgLeuLeuLys :  187
        ||||||||! !.!!|||! !|||   :!!:!!!   !!|||:!!:!!  !||||||:!!
        rgTyrSerProGlyPheLeuThrAlaAspValAlaAlaAspValGluAlaLeuLeuGlu
 3587 : GCTACTCGCCGGGCTTCCTGACCGCGGACGTCGCCGCGGACGTCGAGGCCCTCCTCGAG : 3645

vulgar: (GPx2)Mus 137 187 . scaffold_6:subseq(1230345,6458) 3421 3645 + 124 M 9 27 S 0 1 5 0 2 I 0 70 3 0 2 S 1 2 M 40 120
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome 1.4.0
##date 2009-03-19
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
scaffold_6:subseq(1230345,6458)	exonerate:protein2genome	gene	3422	3645	124	+	.	gene_id 2 ; sequence (GPx2)Mus ; gene_orientation +
scaffold_6:subseq(1230345,6458)	exonerate:protein2genome	cds	3422	3449	.	+	.	
scaffold_6:subseq(1230345,6458)	exonerate:protein2genome	exon	3422	3449	.	+	.	insertions 0 ; deletions 0
scaffold_6:subseq(1230345,6458)	exonerate:protein2genome	splice5	3450	3451	.	+	.	intron_id 1 ; splice_site "GC"
scaffold_6:subseq(1230345,6458)	exonerate:protein2genome	intron	3450	3523	.	+	.	intron_id 1
scaffold_6:subseq(1230345,6458)	exonerate:protein2genome	splice3	3522	3523	.	+	.	intron_id 0 ; splice_site "AG"
scaffold_6:subseq(1230345,6458)	exonerate:protein2genome	cds	3524	3645	.	+	.	
scaffold_6:subseq(1230345,6458)	exonerate:protein2genome	exon	3524	3645	.	+	.	insertions 0 ; deletions 0
scaffold_6:subseq(1230345,6458)	exonerate:protein2genome	similarity	3422	3645	124	+	.	alignment_id 2 ; Query (GPx2)Mus ; Align 3422 138 27 ; Align 3526 148 120
# --- END OF GFF DUMP ---
#

C4 Alignment:
------------
         Query: (GPx6)Mus musculus # Complete
        Target: scaffold_6:subseq(1230345,6458)
         Model: protein2genome
     Raw score: 188
   Query range: 60 -> 163
  Target range: 3079 -> 3388

   61 : GlyLysHisIleLeuPheValAsnValAlaSerPheCysGlyLeuThrAla<->ThrTyrPr :   80
        |||:!!  !:!:||| ! ! !||||||||||||.!!!! |||  !|||!.!     !!:! !
        GlyGlnValValLeuValGluAsnValAlaSerIle***GlyThrThrValArgAspPheTh
 3080 : GGCCAGGTCGTGCTCGTGGAAAACGTCGCGAGTATCTGAGGCACGACGGTCAGGGACTTCAC : 3140

   81 : oGluLeuAsnThrLeuGlnGluGluLeuLysProPheAsnValThrValLeuGlyPheProC :  101
        !:!!:!!|||  !|||   |||:!!!!!     !   !!. !!|||  !|||||||||||| 
        rGlnMetAsnAspLeuThrGluLysPheAlaGly---LysPheThrCysLeuGlyPheProT
 3141 : GCAGATGAACGACCTGACCGAGAAATTCGCCGGC---AAGTTCACGTGCCTCGGCTTCCCGA : 3200

  102 : ysAsnGlnPheGlyLysGlnGluProGlyLysAsnSerGluIleLeuLeuGlyLeuLysTyr :  121
          ||||||||||||||||||  !  !! !|||:!!!!!|||:!:|||! !  !|||  !:!!
        hrAsnGlnPheGlyLysGlnThrAsnGluLysAspTrpGluLeuLeuProMetLeuAlaHis
 3201 : CGAACCAGTTCGGGAAGCAGACGAACGAGAAGGACTGGGAGCTGCTGCCCATGCTCGCGCAC : 3260

  122 : ValArgProGlyGlyGlyTyrValProAsnPheGlnLeuPheGluLysGlyAspValAsnGl :  142
        ||||||||||||||||||!:!||||||||||||!  :!!|||   |||  !!!:!.!|||||
        ValArgProGlyGlyGlyPheValProAsnPheProIlePheThrLysThrGluAlaAsnGl
 3261 : GTGCGCCCCGGCGGCGGCTTCGTGCCCAACTTCCCCATCTTCACCAAGACCGAGGCCAACGG : 3323

  143 : yAspAsnGluGlnLysValPheSerPheLeuLysAsnSerCysProProThrSerGluLeuP :  163
        |!!:..!! !..! ! :!!|||!.!||||||::!:::|||  !  ! !! !!|||!!:  !|
        yGluGlyAlaSerAspLeuPheLysPheLeuArgSerSerLeuGlyAlaProSerAspAspP
 3324 : CGAGGGCGCGTCGGACCTGTTCAAGTTCCTCCGGTCGTCCCTCGGCGCGCCGAGCGACGACT : 3386

  164 : he :  163
        ||
        he
 3387 : TC : 3388

vulgar: (GPx6)Mus 60 163 . scaffold_6:subseq(1230345,6458) 3079 3388 + 188 M 17 51 G 0 3 M 14 42 G 1 0 M 71 213
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome 1.4.0
##date 2009-03-19
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
scaffold_6:subseq(1230345,6458)	exonerate:protein2genome	gene	3080	3388	188	+	.	gene_id 1 ; sequence (GPx6)Mus ; gene_orientation .
scaffold_6:subseq(1230345,6458)	exonerate:protein2genome	cds	3080	3388	.	+	.	
scaffold_6:subseq(1230345,6458)	exonerate:protein2genome	exon	3080	3388	.	+	.	insertions 3 ; deletions 1
scaffold_6:subseq(1230345,6458)	exonerate:protein2genome	similarity	3080	3388	188	+	.	alignment_id 1 ; Query (GPx6)Mus ; Align 3080 61 51 ; Align 3134 78 42 ; Align 3176 93 213
# --- END OF GFF DUMP ---
#

C4 Alignment:
------------
         Query: (GPx5)Mus musculus # Complete
        Target: scaffold_6:subseq(1230345,6458)
         Model: protein2genome
     Raw score: 185
   Query range: 72 -> 177
  Target range: 3067 -> 3382

   73 : LysGlnTyrAlaGlyLysHisValLeuPheValAsnValAlaThrTyrCysGlyLeuThrIl :   93
        :::!:!! !  !|||:!!  !|||||| ! ! !|||||||||!:!  !!! |||  !|||:!
        ArgArgSerLeuGlyGlnValValLeuValGluAsnValAlaSerIle***GlyThrThrVa
 3068 : CGCCGATCTTTAGGCCAGGTCGTGCTCGTGGAAAACGTCGCGAGTATCTGAGGCACGACGGT : 3128

   94 : eGln<->TyrProGluLeuAsnAlaLeuGlnGluAspLeuLysProPheGlyLeuValIleL :  113
        !::!   !:! !!:!!:!!|||! !|||   ||| ! !!!     !     !!!!..!  !|
        lArgAspPheThrGlnMetAsnAspLeuThrGluLysPheAlaGly---LysPheThrCysL
 3129 : CAGGGACTTCACGCAGATGAACGACCTGACCGAGAAATTCGCCGGC---AAGTTCACGTGCC : 3188

  114 : euGlyPheProCysAsnGlnPheGlyLysGlnGluProGlyAspAsnLeuGluIleLeuPro :  133
        |||||||||||   ||||||||||||||||||  !  !! ! ! :!!! !|||:!:||||||
        euGlyPheProThrAsnGlnPheGlyLysGlnThrAsnGluLysAspTrpGluLeuLeuPro
 3189 : TCGGCTTCCCGACGAACCAGTTCGGGAAGCAGACGAACGAGAAGGACTGGGAGCTGCTGCCC : 3248

  134 : GlyLeuLysTyrValArgProGlyLysGlyPheLeuProAsnPheGlnLeuPheAlaLysGl :  154
          !|||  !:!!||||||||||||   ||||||:!!|||||||||!  :!!|||.!!|||  
        MetLeuAlaHisValArgProGlyGlyGlyPheValProAsnPheProIlePheThrLysTh
 3249 : ATGCTCGCGCACGTGCGCCCCGGCGGCGGCTTCGTGCCCAACTTCCCCATCTTCACCAAGAC : 3311

  155 : yAspValAsnGlyGluAsnGluGlnLysIlePheThrPheLeuLysArgSerCysProHisP :  175
        !!!:!.!|||||||||..!! !..! ! :!:|||! !||||||::!  !|||  !  !   |
        rGluAlaAsnGlyGluGlyAlaSerAspLeuPheLysPheLeuArgSerSerLeuGlyAlaP
 3312 : CGAGGCCAACGGCGAGGGCGCGTCGGACCTGTTCAAGTTCCTCCGGTCGTCCCTCGGCGCGC : 3374

  176 : roSerGlu :  177
        |||||!!:
        roSerAsp
 3375 : CGAGCGAC : 3382

vulgar: (GPx5)Mus 72 177 . scaffold_6:subseq(1230345,6458) 3067 3382 + 185 M 22 66 G 0 3 M 13 39 G 1 0 M 69 207
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome 1.4.0
##date 2009-03-19
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
scaffold_6:subseq(1230345,6458)	exonerate:protein2genome	gene	3068	3382	185	+	.	gene_id 1 ; sequence (GPx5)Mus ; gene_orientation .
scaffold_6:subseq(1230345,6458)	exonerate:protein2genome	cds	3068	3382	.	+	.	
scaffold_6:subseq(1230345,6458)	exonerate:protein2genome	exon	3068	3382	.	+	.	insertions 3 ; deletions 1
scaffold_6:subseq(1230345,6458)	exonerate:protein2genome	similarity	3068	3382	185	+	.	alignment_id 1 ; Query (GPx5)Mus ; Align 3068 73 66 ; Align 3137 95 39 ; Align 3176 109 207
# --- END OF GFF DUMP ---
#

C4 Alignment:
------------
         Query: (GPx6)Pan troglodytes # Complete
        Target: scaffold_6:subseq(1230345,6458)
         Model: protein2genome
     Raw score: 149
   Query range: 56 -> 161
  Target range: 3067 -> 3382

   57 : LysGlnPheAlaGlyLysHisValLeuPheValAsnValAlaThrTyrUnkGlyLeuAlaAl :   77
        :::!:!! !  !|||:!!  !|||||| ! ! !|||||||||!:!  !   |||  !.!!!.
        ArgArgSerLeuGlyGlnValValLeuValGluAsnValAlaSerIle***GlyThrThrVa
 3068 : CGCCGATCTTTAGGCCAGGTCGTGCTCGTGGAAAACGTCGCGAGTATCTGAGGCACGACGGT : 3128

   78 : aGln<->TyrProGluLeuAsnAlaLeuGlnGluGluLeuLysAsnPheGlyValIleValL :   97
        !::!   !:! !!:!!:!!|||! !|||   |||:!!!!!   ..!     ! !!!    !|
        lArgAspPheThrGlnMetAsnAspLeuThrGluLysPheAlaGly---LysPheThrCysL
 3129 : CAGGGACTTCACGCAGATGAACGACCTGACCGAGAAATTCGCCGGC---AAGTTCACGTGCC : 3188

   98 : euAlaPheProCysAsnGlnPheGlyLysGlnGluProGlyThrAsnSerGluIleLeuLeu :  117
        ||!.!||||||   ||||||||||||||||||  !  !! !! !:!!!!!|||:!:|||! !
        euGlyPheProThrAsnGlnPheGlyLysGlnThrAsnGluLysAspTrpGluLeuLeuPro
 3189 : TCGGCTTCCCGACGAACCAGTTCGGGAAGCAGACGAACGAGAAGGACTGGGAGCTGCTGCCC : 3248

  118 : GlyLeuLysTyrValCysProGlySerGlyPheValProSerPheGlnLeuPheGluLysGl :  138
          !|||  !:!!||| !!||||||.!!||||||||||||!:!|||!  :!!|||   |||  
        MetLeuAlaHisValArgProGlyGlyGlyPheValProAsnPheProIlePheThrLysTh
 3249 : ATGCTCGCGCACGTGCGCCCCGGCGGCGGCTTCGTGCCCAACTTCCCCATCTTCACCAAGAC : 3311

  139 : yAspValAsnGlyGluLysGluGlnLysValPheThrPheLeuLysAsnSerCysProProT :  159
        !!!:!.!|||||||||   ! !..! ! :!!|||! !||||||::!:::|||  !  ! !! 
        rGluAlaAsnGlyGluGlyAlaSerAspLeuPheLysPheLeuArgSerSerLeuGlyAlaP
 3312 : CGAGGCCAACGGCGAGGGCGCGTCGGACCTGTTCAAGTTCCTCCGGTCGTCCCTCGGCGCGC : 3374

  160 : hrSerAsp :  161
        !!||||||
        roSerAsp
 3375 : CGAGCGAC : 3382

vulgar: (GPx6)Pan 56 161 . scaffold_6:subseq(1230345,6458) 3067 3382 + 149 M 22 66 G 0 3 M 13 39 G 1 0 M 69 207
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome 1.4.0
##date 2009-03-19
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
scaffold_6:subseq(1230345,6458)	exonerate:protein2genome	gene	3068	3382	149	+	.	gene_id 1 ; sequence (GPx6)Pan ; gene_orientation .
scaffold_6:subseq(1230345,6458)	exonerate:protein2genome	cds	3068	3382	.	+	.	
scaffold_6:subseq(1230345,6458)	exonerate:protein2genome	exon	3068	3382	.	+	.	insertions 3 ; deletions 1
scaffold_6:subseq(1230345,6458)	exonerate:protein2genome	similarity	3068	3382	149	+	.	alignment_id 1 ; Query (GPx6)Pan ; Align 3068 57 66 ; Align 3137 79 39 ; Align 3176 93 207
# --- END OF GFF DUMP ---
#

C4 Alignment:
------------
         Query: (GPx5)Pan troglodytes # Complete
        Target: scaffold_6:subseq(1230345,6458)
         Model: protein2genome
     Raw score: 193
   Query range: 56 -> 160
  Target range: 3067 -> 3382

   57 : LysGlnTyrValGlyLysHisIleLeuPheValAsnValAlaThrTyrCysGlyLeuThrAl :   77
        :::!:!! !:!!|||:!!  !:!:||| ! ! !|||||||||!:!  !!! |||  !|||!.
        ArgArgSerLeuGlyGlnValValLeuValGluAsnValAlaSerIle***GlyThrThrVa
 3068 : CGCCGATCTTTAGGCCAGGTCGTGCTCGTGGAAAACGTCGCGAGTATCTGAGGCACGACGGT : 3128

   78 : aGln<->TyrProGluLeuAsnAlaProGluGluLeuLysProTyrGlyLeuValValLeuG :   97
        !::!   !:! !!:!!:!!|||! !! !   |||  !    !!  !  !!!!..!  !||||
        lArgAspPheThrGlnMetAsnAspLeuThrGluLysPheAlaGlyLysPheThrCysLeuG
 3129 : CAGGGACTTCACGCAGATGAACGACCTGACCGAGAAATTCGCCGGCAAGTTCACGTGCCTCG : 3191

   98 : lyPheProCysAsnGlnPheGlyLysGlnGluProGlyAspAsnLysGluIleLeuProAla :  117
        ||||||||   ||||||||||||||||||  !  !! ! ! :!!  !|||:!:||||||  !
        lyPheProThrAsnGlnPheGlyLysGlnThrAsnGluLysAspTrpGluLeuLeuProMet
 3192 : GCTTCCCGACGAACCAGTTCGGGAAGCAGACGAACGAGAAGGACTGGGAGCTGCTGCCCATG : 3251

  118 : LeuLysTyrValArgProGlyGlyGlyPheValProSerPheGlnLeuPheGluLysGlyAs :  138
        |||  !:!!|||||||||||||||||||||||||||!:!|||!  :!!|||   |||  !!!
        LeuAlaHisValArgProGlyGlyGlyPheValProAsnPheProIlePheThrLysThrGl
 3252 : CTCGCGCACGTGCGCCCCGGCGGCGGCTTCGTGCCCAACTTCCCCATCTTCACCAAGACCGA : 3314

  139 : pValAsnGlyGluLysGluGlnLysValPheSerPheLeuLysHisSerCysProHisProS :  159
        :!.!|||||||||   ! !..! ! :!!|||!.!||||||::!   |||  !  !   ||||
        uAlaAsnGlyGluGlyAlaSerAspLeuPheLysPheLeuArgSerSerLeuGlyAlaProS
 3315 : GGCCAACGGCGAGGGCGCGTCGGACCTGTTCAAGTTCCTCCGGTCGTCCCTCGGCGCGCCGA : 3377

  160 : erGlu :  160
        ||!!:
        erAsp
 3378 : GCGAC : 3382

vulgar: (GPx5)Pan 56 160 . scaffold_6:subseq(1230345,6458) 3067 3382 + 193 M 22 66 G 0 3 M 82 246
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome 1.4.0
##date 2009-03-19
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
scaffold_6:subseq(1230345,6458)	exonerate:protein2genome	gene	3068	3382	193	+	.	gene_id 1 ; sequence (GPx5)Pan ; gene_orientation .
scaffold_6:subseq(1230345,6458)	exonerate:protein2genome	cds	3068	3382	.	+	.	
scaffold_6:subseq(1230345,6458)	exonerate:protein2genome	exon	3068	3382	.	+	.	insertions 3 ; deletions 0
scaffold_6:subseq(1230345,6458)	exonerate:protein2genome	similarity	3068	3382	193	+	.	alignment_id 1 ; Query (GPx5)Pan ; Align 3068 57 66 ; Align 3137 79 246
# --- END OF GFF DUMP ---
#

C4 Alignment:
------------
         Query: (GPx3)Pan troglodytes # Complete
        Target: scaffold_6:subseq(1230345,6458)
         Model: protein2genome
     Raw score: 192
   Query range: 56 -> 161
  Target range: 3067 -> 3382

   57 : LysGlnTyrAlaGlyLysTyrValLeuPheValAsnValAlaSerTyrUnkGlyLeuThr<- :   77
        :::!:!! !  !|||:!!  !|||||| ! ! !||||||||||||  !   |||  !|||  
        ArgArgSerLeuGlyGlnValValLeuValGluAsnValAlaSerIle***GlyThrThrVa
 3068 : CGCCGATCTTTAGGCCAGGTCGTGCTCGTGGAAAACGTCGCGAGTATCTGAGGCACGACGGT : 3128

   78 : >GlyGlnTyrIleGluLeuAsnAlaLeuGlnGluGluLeuAlaProPheGlyLeuValIleL :   97
          !!.!.!:!!  :!!:!!|||! !|||   |||:!!!!!|||  !     !!!!..!  !|
        lArgAspPheThrGlnMetAsnAspLeuThrGluLysPheAlaGly---LysPheThrCysL
 3129 : CAGGGACTTCACGCAGATGAACGACCTGACCGAGAAATTCGCCGGC---AAGTTCACGTGCC : 3188

   98 : euGlyPheProCysAsnGlnPheGlyLysGlnGluProGlyGluAsnSerGluIleLeuPro :  117
        |||||||||||   ||||||||||||||||||  !  !! !:!!:!!!!!|||:!:||||||
        euGlyPheProThrAsnGlnPheGlyLysGlnThrAsnGluLysAspTrpGluLeuLeuPro
 3189 : TCGGCTTCCCGACGAACCAGTTCGGGAAGCAGACGAACGAGAAGGACTGGGAGCTGCTGCCC : 3248

  118 : ThrLeuLysTyrValArgProGlyGlyGlyPheValProAsnPheGlnLeuPheGluLysGl :  138
        ! !|||  !:!!|||||||||||||||||||||||||||||||||!  :!!|||   |||  
        MetLeuAlaHisValArgProGlyGlyGlyPheValProAsnPheProIlePheThrLysTh
 3249 : ATGCTCGCGCACGTGCGCCCCGGCGGCGGCTTCGTGCCCAACTTCCCCATCTTCACCAAGAC : 3311

  139 : yAspValAsnGlyGluLysGluGlnLysPheTyrThrPheLeuLysAsnSerCysProProT :  159
        !!!:!.!|||||||||   ! !..! ! .!.!:!! !||||||::!:::|||  !  ! !! 
        rGluAlaAsnGlyGluGlyAlaSerAspLeuPheLysPheLeuArgSerSerLeuGlyAlaP
 3312 : CGAGGCCAACGGCGAGGGCGCGTCGGACCTGTTCAAGTTCCTCCGGTCGTCCCTCGGCGCGC : 3374

  160 : hrSerGlu :  161
        !!|||!!:
        roSerAsp
 3375 : CGAGCGAC : 3382

vulgar: (GPx3)Pan 56 161 . scaffold_6:subseq(1230345,6458) 3067 3382 + 192 M 20 60 G 0 3 M 15 45 G 1 0 M 69 207
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome 1.4.0
##date 2009-03-19
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
scaffold_6:subseq(1230345,6458)	exonerate:protein2genome	gene	3068	3382	192	+	.	gene_id 1 ; sequence (GPx3)Pan ; gene_orientation .
scaffold_6:subseq(1230345,6458)	exonerate:protein2genome	cds	3068	3382	.	+	.	
scaffold_6:subseq(1230345,6458)	exonerate:protein2genome	exon	3068	3382	.	+	.	insertions 3 ; deletions 1
scaffold_6:subseq(1230345,6458)	exonerate:protein2genome	similarity	3068	3382	192	+	.	alignment_id 1 ; Query (GPx3)Pan ; Align 3068 57 60 ; Align 3131 77 45 ; Align 3176 93 207
# --- END OF GFF DUMP ---
#

C4 Alignment:
------------
         Query: (GPx6)Homo sapiens # Complete
        Target: scaffold_6:subseq(1230345,6458)
         Model: protein2genome
     Raw score: 149
   Query range: 56 -> 161
  Target range: 3067 -> 3382

   57 : LysGlnPheAlaGlyLysHisValLeuPheValAsnValAlaAlaTyrUnkGlyLeuAlaAl :   77
        :::!:!! !  !|||:!!  !|||||| ! ! !|||||||||::!  !   |||  !.!!!.
        ArgArgSerLeuGlyGlnValValLeuValGluAsnValAlaSerIle***GlyThrThrVa
 3068 : CGCCGATCTTTAGGCCAGGTCGTGCTCGTGGAAAACGTCGCGAGTATCTGAGGCACGACGGT : 3128

   78 : aGln<->TyrProGluLeuAsnAlaLeuGlnGluGluLeuLysAsnPheGlyValIleValL :   97
        !::!   !:! !!:!!:!!|||! !|||   |||:!!!!!   ..!     ! !!!    !|
        lArgAspPheThrGlnMetAsnAspLeuThrGluLysPheAlaGly---LysPheThrCysL
 3129 : CAGGGACTTCACGCAGATGAACGACCTGACCGAGAAATTCGCCGGC---AAGTTCACGTGCC : 3188

   98 : euAlaPheProCysAsnGlnPheGlyLysGlnGluProGlyThrAsnSerGluIleLeuLeu :  117
        ||!.!||||||   ||||||||||||||||||  !  !! !! !:!!!!!|||:!:|||! !
        euGlyPheProThrAsnGlnPheGlyLysGlnThrAsnGluLysAspTrpGluLeuLeuPro
 3189 : TCGGCTTCCCGACGAACCAGTTCGGGAAGCAGACGAACGAGAAGGACTGGGAGCTGCTGCCC : 3248

  118 : GlyLeuLysTyrValCysProGlySerGlyPheValProSerPheGlnLeuPheGluLysGl :  138
          !|||  !:!!||| !!||||||.!!||||||||||||!:!|||!  :!!|||   |||  
        MetLeuAlaHisValArgProGlyGlyGlyPheValProAsnPheProIlePheThrLysTh
 3249 : ATGCTCGCGCACGTGCGCCCCGGCGGCGGCTTCGTGCCCAACTTCCCCATCTTCACCAAGAC : 3311

  139 : yAspValAsnGlyGluLysGluGlnLysValPheThrPheLeuLysAsnSerCysProProT :  159
        !!!:!.!|||||||||   ! !..! ! :!!|||! !||||||::!:::|||  !  ! !! 
        rGluAlaAsnGlyGluGlyAlaSerAspLeuPheLysPheLeuArgSerSerLeuGlyAlaP
 3312 : CGAGGCCAACGGCGAGGGCGCGTCGGACCTGTTCAAGTTCCTCCGGTCGTCCCTCGGCGCGC : 3374

  160 : hrSerAsp :  161
        !!||||||
        roSerAsp
 3375 : CGAGCGAC : 3382

vulgar: (GPx6)Homo 56 161 . scaffold_6:subseq(1230345,6458) 3067 3382 + 149 M 22 66 G 0 3 M 13 39 G 1 0 M 69 207
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome 1.4.0
##date 2009-03-19
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
scaffold_6:subseq(1230345,6458)	exonerate:protein2genome	gene	3068	3382	149	+	.	gene_id 1 ; sequence (GPx6)Homo ; gene_orientation .
scaffold_6:subseq(1230345,6458)	exonerate:protein2genome	cds	3068	3382	.	+	.	
scaffold_6:subseq(1230345,6458)	exonerate:protein2genome	exon	3068	3382	.	+	.	insertions 3 ; deletions 1
scaffold_6:subseq(1230345,6458)	exonerate:protein2genome	similarity	3068	3382	149	+	.	alignment_id 1 ; Query (GPx6)Homo ; Align 3068 57 66 ; Align 3137 79 39 ; Align 3176 93 207
# --- END OF GFF DUMP ---
#

C4 Alignment:
------------
         Query: (GPx5)Homo sapiens # Complete
        Target: scaffold_6:subseq(1230345,6458)
         Model: protein2genome
     Raw score: 187
   Query range: 56 -> 161
  Target range: 3067 -> 3382

   57 : LysGlnTyrValGlyLysHisIleLeuPheValAsnValAlaThrTyrCysGlyLeuThrAl :   77
        :::!:!! !:!!|||:!!  !:!:||| ! ! !|||||||||!:!  !!! |||  !|||!.
        ArgArgSerLeuGlyGlnValValLeuValGluAsnValAlaSerIle***GlyThrThrVa
 3068 : CGCCGATCTTTAGGCCAGGTCGTGCTCGTGGAAAACGTCGCGAGTATCTGAGGCACGACGGT : 3128

   78 : aGln<->TyrProGluLeuAsnAlaLeuGlnGluGluLeuLysProTyrGlyLeuValValL :   97
        !::!   !:! !!:!!:!!|||! !|||   |||:!!!!!     !     !!!!..!  !|
        lArgAspPheThrGlnMetAsnAspLeuThrGluLysPheAlaGly---LysPheThrCysL
 3129 : CAGGGACTTCACGCAGATGAACGACCTGACCGAGAAATTCGCCGGC---AAGTTCACGTGCC : 3188

   98 : euGlyPheProCysAsnGlnPheGlyLysGlnGluProGlyAspAsnLysGluIleLeuPro :  117
        |||||||||||   ||||||||||||||||||  !  !! ! ! :!!  !|||:!:||||||
        euGlyPheProThrAsnGlnPheGlyLysGlnThrAsnGluLysAspTrpGluLeuLeuPro
 3189 : TCGGCTTCCCGACGAACCAGTTCGGGAAGCAGACGAACGAGAAGGACTGGGAGCTGCTGCCC : 3248

  118 : GlyLeuLysTyrValArgProGlyGlyGlyPheValProSerPheGlnLeuPheGluLysGl :  138
          !|||  !:!!|||||||||||||||||||||||||||!:!|||!  :!!|||   |||  
        MetLeuAlaHisValArgProGlyGlyGlyPheValProAsnPheProIlePheThrLysTh
 3249 : ATGCTCGCGCACGTGCGCCCCGGCGGCGGCTTCGTGCCCAACTTCCCCATCTTCACCAAGAC : 3311

  139 : yAspValAsnGlyGluLysGluGlnLysValPheSerPheLeuLysHisSerCysProHisP :  159
        !!!:!.!|||||||||   ! !..! ! :!!|||!.!||||||::!   |||  !  !   |
        rGluAlaAsnGlyGluGlyAlaSerAspLeuPheLysPheLeuArgSerSerLeuGlyAlaP
 3312 : CGAGGCCAACGGCGAGGGCGCGTCGGACCTGTTCAAGTTCCTCCGGTCGTCCCTCGGCGCGC : 3374

  160 : roSerGlu :  161
        |||||!!:
        roSerAsp
 3375 : CGAGCGAC : 3382

vulgar: (GPx5)Homo 56 161 . scaffold_6:subseq(1230345,6458) 3067 3382 + 187 M 22 66 G 0 3 M 13 39 G 1 0 M 69 207
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome 1.4.0
##date 2009-03-19
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
scaffold_6:subseq(1230345,6458)	exonerate:protein2genome	gene	3068	3382	187	+	.	gene_id 1 ; sequence (GPx5)Homo ; gene_orientation .
scaffold_6:subseq(1230345,6458)	exonerate:protein2genome	cds	3068	3382	.	+	.	
scaffold_6:subseq(1230345,6458)	exonerate:protein2genome	exon	3068	3382	.	+	.	insertions 3 ; deletions 1
scaffold_6:subseq(1230345,6458)	exonerate:protein2genome	similarity	3068	3382	187	+	.	alignment_id 1 ; Query (GPx5)Homo ; Align 3068 57 66 ; Align 3137 79 39 ; Align 3176 93 207
# --- END OF GFF DUMP ---
#

C4 Alignment:
------------
         Query: (GPx3)Homo sapiens # Complete
        Target: scaffold_6:subseq(1230345,6458)
         Model: protein2genome
     Raw score: 192
   Query range: 56 -> 161
  Target range: 3067 -> 3382

   57 : LysGlnTyrAlaGlyLysTyrValLeuPheValAsnValAlaSerTyrUnkGlyLeuThr<- :   77
        :::!:!! !  !|||:!!  !|||||| ! ! !||||||||||||  !   |||  !|||  
        ArgArgSerLeuGlyGlnValValLeuValGluAsnValAlaSerIle***GlyThrThrVa
 3068 : CGCCGATCTTTAGGCCAGGTCGTGCTCGTGGAAAACGTCGCGAGTATCTGAGGCACGACGGT : 3128

   78 : >GlyGlnTyrIleGluLeuAsnAlaLeuGlnGluGluLeuAlaProPheGlyLeuValIleL :   97
          !!.!.!:!!  :!!:!!|||! !|||   |||:!!!!!|||  !     !!!!..!  !|
        lArgAspPheThrGlnMetAsnAspLeuThrGluLysPheAlaGly---LysPheThrCysL
 3129 : CAGGGACTTCACGCAGATGAACGACCTGACCGAGAAATTCGCCGGC---AAGTTCACGTGCC : 3188

   98 : euGlyPheProCysAsnGlnPheGlyLysGlnGluProGlyGluAsnSerGluIleLeuPro :  117
        |||||||||||   ||||||||||||||||||  !  !! !:!!:!!!!!|||:!:||||||
        euGlyPheProThrAsnGlnPheGlyLysGlnThrAsnGluLysAspTrpGluLeuLeuPro
 3189 : TCGGCTTCCCGACGAACCAGTTCGGGAAGCAGACGAACGAGAAGGACTGGGAGCTGCTGCCC : 3248

  118 : ThrLeuLysTyrValArgProGlyGlyGlyPheValProAsnPheGlnLeuPheGluLysGl :  138
        ! !|||  !:!!|||||||||||||||||||||||||||||||||!  :!!|||   |||  
        MetLeuAlaHisValArgProGlyGlyGlyPheValProAsnPheProIlePheThrLysTh
 3249 : ATGCTCGCGCACGTGCGCCCCGGCGGCGGCTTCGTGCCCAACTTCCCCATCTTCACCAAGAC : 3311

  139 : yAspValAsnGlyGluLysGluGlnLysPheTyrThrPheLeuLysAsnSerCysProProT :  159
        !!!:!.!|||||||||   ! !..! ! .!.!:!! !||||||::!:::|||  !  ! !! 
        rGluAlaAsnGlyGluGlyAlaSerAspLeuPheLysPheLeuArgSerSerLeuGlyAlaP
 3312 : CGAGGCCAACGGCGAGGGCGCGTCGGACCTGTTCAAGTTCCTCCGGTCGTCCCTCGGCGCGC : 3374

  160 : hrSerGlu :  161
        !!|||!!:
        roSerAsp
 3375 : CGAGCGAC : 3382

vulgar: (GPx3)Homo 56 161 . scaffold_6:subseq(1230345,6458) 3067 3382 + 192 M 20 60 G 0 3 M 15 45 G 1 0 M 69 207
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome 1.4.0
##date 2009-03-19
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
scaffold_6:subseq(1230345,6458)	exonerate:protein2genome	gene	3068	3382	192	+	.	gene_id 1 ; sequence (GPx3)Homo ; gene_orientation .
scaffold_6:subseq(1230345,6458)	exonerate:protein2genome	cds	3068	3382	.	+	.	
scaffold_6:subseq(1230345,6458)	exonerate:protein2genome	exon	3068	3382	.	+	.	insertions 3 ; deletions 1
scaffold_6:subseq(1230345,6458)	exonerate:protein2genome	similarity	3068	3382	192	+	.	alignment_id 1 ; Query (GPx3)Homo ; Align 3068 57 60 ; Align 3131 77 45 ; Align 3176 93 207
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis
