Command line: [exonerate -m p2g --showtargetgff -q eEFsec.fa -t scaffolds_tallats/eEFsec_scaffold7_seqDNA.fa]
Hostname: [localhost]

C4 Alignment:
------------
         Query: SPP00000085_1.0 # Protein # Eukaryotic elongation factor (eEFSec) # Caenorhabditis elegans # Complete
        Target: scaffold_7:subseq(1347524,6866) [revcomp]
         Model: protein2genome
     Raw score: 141
   Query range: 69 -> 145
  Target range: 3683 -> 3455

   70 : SerGlyArgArgLeuAlaLeuIleAspCysProGlyHisSerGlyLeuIleArgAlaValLe :   90
        ..!.!!|||!.!! !|||! !:!!|||||||||||||||:!!! !! !:!!!:!  !:!!:!
        AspSerArgHisTyrAlaHisValAspCysProGlyHisAlaAspTyrValLysAsnMetIl
 3683 : GACAGCCGCCACTACGCGCACGTCGACTGCCCCGGGCACGCGGACTACGTCAAGAACATGAT : 3623

   91 : uAlaAlaSerThrValPheAspMetAlaIleValIleIleAspValValAlaGlyIleGlnP :  111
        !.!!!.!:!!.!!  !.!.|||   ||||||:!!:!!:!:...!.!..!! !|||  !..!|
        eThrGlyAlaAlaGlnMetAspGlyAlaIleLeuValValSerAlaThrAspGlyProMetP
 3622 : CACGGGCGCGGCGCAGATGGACGGCGCCATCCTCGTCGTGTCGGCGACGGACGGCCCCATGC : 3560

  112 : roGlnThrAlaGluHisLeuLeuLeuAlaSerLysPheCysProAsnArgValIleIleVal :  131
        ||||||||  !||||||:!!||||||||| !!:!! !! !!  !   !.!:!!:!!:!! !!
        roGlnThrArgGluHisIleLeuLeuAlaArgGlnValGlyIleProHisLeuValValPhe
 3559 : CCCAGACGCGCGAGCACATCCTGCTCGCGCGCCAGGTCGGCATCCCGCACCTCGTCGTCTTC : 3500

  132 : LeuAsnLysCysAspLeuAlaGluLysSerLysIleSerGlu :  145
        :!!||||||||||||  !!.!!!: ! ..!:!!:!:  !|||
        MetAsnLysCysAspAlaValAspAspGluGluLeuLeuGlu
 3499 : ATGAACAAGTGCGACGCCGTCGACGACGAGGAGCTGCTCGAG : 3456

vulgar: SPP00000085_1.0 69 145 . scaffold_7:subseq(1347524,6866) 3683 3455 - 141 M 76 228
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome 1.4.0
##date 2009-03-17
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
scaffold_7:subseq(1347524,6866)	exonerate:protein2genome	gene	3456	3683	141	-	.	gene_id 1 ; sequence SPP00000085_1.0 ; gene_orientation .
scaffold_7:subseq(1347524,6866)	exonerate:protein2genome	cds	3456	3683	.	-	.	
scaffold_7:subseq(1347524,6866)	exonerate:protein2genome	exon	3456	3683	.	-	.	insertions 0 ; deletions 0
scaffold_7:subseq(1347524,6866)	exonerate:protein2genome	similarity	3456	3683	141	-	.	alignment_id 1 ; Query SPP00000085_1.0 ; Align 3684 70 228
# --- END OF GFF DUMP ---
#

C4 Alignment:
------------
         Query: SPP00000085_1.0 # Protein # Eukaryotic elongation factor (eEFSec) # Caenorhabditis elegans # Complete
        Target: scaffold_7:subseq(1347524,6866) [revcomp]
         Model: protein2genome
     Raw score: 113
   Query range: 176 -> 241
  Target range: 3338 -> 3143

  177 : GluGluMetLeuGlnAsnLeuLysLeuAlaIleGluSerArgIlePheGluProLysArgAs :  197
        |||!!:! !:!!   .!.|||! !  !|||:!!!!:|||  !|||     !||| ! |||||
        GluAspLysIleValGluLeuMetAspAlaValAspSerTyrIleProLeuProAspArgAs
 3338 : GAGGACAAGATCGTCGAGCTCATGGACGCCGTCGACTCCTACATCCCGCTGCCGGACCGCGA : 3278

  198 : pGluGluGlyGluPheLeuIleAlaIleAspHisCysPheAlaIleLysGlyGlnGlyThrV :  218
        |!  !!:  !   ||||||!!: !!:!!!!: !!  !|||:!!|||   |||!::|||||||
        pValAspLysProPheLeuMetProValGluAspValPheSerIleAlaGlyArgGlyThrV
 3277 : CGTCGACAAGCCCTTCCTCATGCCCGTCGAGGACGTCTTCTCCATCGCCGGCCGCGGCACGG : 3215

  219 : alLeuThrGlyThrValIleArgGlyValLeuArgLeuAsnThrGluIleGluPheProAla :  238
        ||:!!||||||  !|||     !||||||:!!!:!  !..!  !|||||||||.!!! !!.!
        alValThrGlyArgValGluSerGlyValIleLysThrGlyAspGluIleGluIleLeuGly
 3214 : TGGTCACGGGCCGCGTCGAGTCCGGCGTCATCAAGACGGGCGACGAGATCGAGATCCTCGGC : 3155

  239 : LeuAsnGlu :  241
        |||!:!!!:
        LeuSerAsp
 3154 : CTCAGCGAC : 3144

vulgar: SPP00000085_1.0 176 241 . scaffold_7:subseq(1347524,6866) 3338 3143 - 113 M 65 195
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome 1.4.0
##date 2009-03-17
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
scaffold_7:subseq(1347524,6866)	exonerate:protein2genome	gene	3144	3338	113	-	.	gene_id 2 ; sequence SPP00000085_1.0 ; gene_orientation .
scaffold_7:subseq(1347524,6866)	exonerate:protein2genome	cds	3144	3338	.	-	.	
scaffold_7:subseq(1347524,6866)	exonerate:protein2genome	exon	3144	3338	.	-	.	insertions 0 ; deletions 0
scaffold_7:subseq(1347524,6866)	exonerate:protein2genome	similarity	3144	3338	113	-	.	alignment_id 2 ; Query SPP00000085_1.0 ; Align 3339 177 195
# --- END OF GFF DUMP ---
#

C4 Alignment:
------------
         Query: SPP00000092_1.0 # Protein # Eukaryotic elongation factor (eEFSec) # Drosophila melanogaster # Complete
        Target: scaffold_7:subseq(1347524,6866) [revcomp]
         Model: protein2genome
     Raw score: 155
   Query range: 3 -> 142
  Target range: 3866 -> 3446

    4 : AsnPheAsnIleGlyLeuLeuGlyHisValAspSerGlyLysThrThrLeuAlaLysAlaLe :   24
        :!!.!.|||:!!|||  !:!!||||||||||||  !|||||||||||||||.!!  !|||:!
        HisMetAsnValGlyThrIleGlyHisValAspHisGlyLysThrThrLeuThrAlaAlaIl
 3866 : CACATGAATGTCGGGACGATAGGGCACGTGGACCACGGCAAGACGACGCTGACGGCGGCGAT : 3806

   25 : uSerSerIleSerSerThrAlaAlaPheAspLysAsnProGlnSerValGluArgGlyIleT :   45
        !!!!!.!:!:  !|||  !  !!.!.!.! !:!!  ! !!   ! !! !!!:! !! !!  .
        eThrLysValLeuSerGluArgGlyMetAlaGluAlaThrAlaPheGlyAspIleAspLysA
 3805 : CACGAAGGTGCTCAGCGAGCGGGGCATGGCCGAGGCCACGGCCTTCGGGGACATCGACAAGG : 3743

   46 : hrLeuAspLeuGlyPheSerGlyLeuLeuValAspAlaProAlaHisLeuProGlnGlyGlu :   65
        !!! !!!:  ! !!    !!|||:!!  !:!!:!!::! !!  !  !  !  !:!!  !!!:
        laProGluGluArgAlaArgGlyIleThrIleAsnSerAlaHisValGluTyrGluThrAsp
 3742 : CCCCCGAGGAGCGCGCGCGCGGCATCACGATCAACAGCGCCCACGTCGAGTACGAGACGGAC : 3683

   66 : GlnLeuGlnPheThrPheValAspCysProGlyHisAlaSerLeuIleArgThrIleIleGl :   86
        ...! !!!.!:!.!!  !|||||||||||||||||||||..!! !:!!!:!!.!!!:|||  
        SerArgHisTyrAlaHisValAspCysProGlyHisAlaAspTyrValLysAsnMetIleTh
 3682 : AGCCGCCACTACGCGCACGTCGACTGCCCCGGGCACGCGGACTACGTCAAGAACATGATCAC : 3620

   87 : yGlyAlaGlnIleIleAspLeuMetLeuLeuValValAspAlaGlnLysGlyLysGlnThrG :  107
        !||||||  !   !!:|||  !   :!!|||||||||...|||  ! ! |||   ..! !!|
        rGlyAlaAlaGlnMetAspGlyAlaIleLeuValValSerAlaThrAspGlyProMetProG
 3619 : GGGCGCGGCGCAGATGGACGGCGCCATCCTCGTCGTGTCGGCGACGGACGGCCCCATGCCCC : 3557

  108 : lnThrAlaGluCysLeuIleIleGlyGluLeuLeuGln<->LysLysLeuIleValValIle :  126
        |||||  !|||  !:!!:!::!!!.!...! !:!!        ! ! |||:!!||| !!!!:
        lnThrArgGluHisIleLeuLeuAlaArgGlnValGlyIleProHisLeuValValPheMet
 3556 : AGACGCGCGAGCACATCCTGCTCGCGCGCCAGGTCGGCATCCCGCACCTCGTCGTCTTCATG : 3497

  127 : AsnLysIleAspValTyrProGluAsnGlnArgAlaSerLysLeuGlu :  142
        ||||||  !|||!.!  !  !!!:.!.:!!! !  !..!   :!!|||
        AsnLysCysAspAlaValAspAspGluGluLeuLeuGluLeuValGlu
 3496 : AACAAGTGCGACGCCGTCGACGACGAGGAGCTGCTCGAGCTCGTGGAG : 3447

vulgar: SPP00000092_1.0 3 142 . scaffold_7:subseq(1347524,6866) 3866 3446 - 155 M 116 348 G 0 3 M 23 69
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome 1.4.0
##date 2009-03-17
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
scaffold_7:subseq(1347524,6866)	exonerate:protein2genome	gene	3447	3866	155	-	.	gene_id 1 ; sequence SPP00000092_1.0 ; gene_orientation .
scaffold_7:subseq(1347524,6866)	exonerate:protein2genome	cds	3447	3866	.	-	.	
scaffold_7:subseq(1347524,6866)	exonerate:protein2genome	exon	3447	3866	.	-	.	insertions 3 ; deletions 0
scaffold_7:subseq(1347524,6866)	exonerate:protein2genome	similarity	3447	3866	155	-	.	alignment_id 1 ; Query SPP00000092_1.0 ; Align 3867 4 348 ; Align 3516 120 69
# --- END OF GFF DUMP ---
#

C4 Alignment:
------------
         Query: SPP00000038_1.0 # Protein # Eukaryotic elongation factor (eEFSec) # Homo sapiens # Complete
        Target: scaffold_7:subseq(1347524,6866) [revcomp]
         Model: protein2genome
     Raw score: 211
   Query range: 90 -> 261
  Target range: 3662 -> 3149

   91 : ValAspCysProGlyHisAlaSerLeuIleArgThrIleIleGlyGlyAlaGlnIleIleAs :  111
        |||||||||||||||||||||..!! !:!!!:!!.!!!:|||  !||||||  !   !!:||
        ValAspCysProGlyHisAlaAspTyrValLysAsnMetIleThrGlyAlaAlaGlnMetAs
 3662 : GTCGACTGCCCCGGGCACGCGGACTACGTCAAGAACATGATCACGGGCGCGGCGCAGATGGA : 3602

  112 : pLeuMetMetLeuValIleAspValThrLysGlyMetGlnThrGlnSerAlaGluCysLeuV :  132
        |  !   !!:||||||:!:...!.!||| ! |||   ..! !!|||!!!  !|||  !:!!:
        pGlyAlaIleLeuValValSerAlaThrAspGlyProMetProGlnThrArgGluHisIleL
 3601 : CGGCGCCATCCTCGTCGTGTCGGCGACGGACGGCCCCATGCCCCAGACGCGCGAGCACATCC : 3539

  133 : alIleGly<->GlnIleAlaCysGlnLysLeuValValValLeuAsnLysIleAspLeuLeu :  151
        !!:!!!.!   |||:!!!.!  !! ! ! ||||||||| !!:!!||||||  !|||  !:!!
        euLeuAlaArgGlnValGlyIleProHisLeuValValPheMetAsnLysCysAspAlaVal
 3538 : TGCTCGCGCGCCAGGTCGGCATCCCGCACCTCGTCGTCTTCATGAACAAGTGCGACGCCGTC : 3479

  152 : ProGluGlyLysArgGlnAlaAlaIleAspLysMetThrLysLysMetGlnLysThrLeuGl :  172
          !!!:! !:!!! !!  ! !  !:!:!!:! !  !! !:!!:!!:!!        !!!! !
        AspAspGluGluLeuLeuGluLeuValGluMetGluIleGlnGluLeu---LeuAspPheTy
 3478 : GACGACGAGGAGCTGCTCGAGCTCGTGGAGATGGAGATCCAGGAGCTG---CTCGACTTCTA : 3419

  173 : uAsnThrLysPheArgGlyAlaProIleIleProValAlaAlaLysProGlyGlyProGluA :  193
         :!!  !     !..!! !.!!|||||||||! !! !::!|||     !!.!  !  !!  !
        rAspPheProGlyGluAspThrProIleIleArgGlySerAlaLeuCysAlaLeuAsnGlyG
 3418 : CGACTTCCCCGGCGAGGACACGCCCATCATCCGCGGCAGCGCGCTCTGCGCGCTCAACGGCG : 3356

  194 : laProGluThrGluAlaProGlnGlyIleProGluLeuIleGluLeuLeuThrSerGlnIle :  213
         !  !:!!  !   !.!  !.!.  !|||  !||||||!!:!!:  !:!!  !||| ! |||
        luLysLysGluLeuGlyGluAspLysIleValGluLeuMetAspAlaValAspSerTyrIle
 3355 : AGAAGAAGGAGCTCGGCGAGGACAAGATCGTCGAGCTCATGGACGCCGTCGACTCCTACATC : 3296

  214 : SerIleProThrArgAspProSerGlyProPheLeuMetSerValAspHisCysPheSerIl :  234
         !!:!:|||  !||||||  !..!  !|||||||||||| !!|||!!: !!  !||||||||
        ProLeuProAspArgAspValAspLysProPheLeuMetProValGluAspValPheSerIl
 3295 : CCGCTGCCGGACCGCGACGTCGACAAGCCCTTCCTCATGCCCGTCGAGGACGTCTTCTCCAT : 3233

  235 : eLysGlyGlnGlyThrValMetThrGlyThrIleLeuSerGlySerIleSerLeuGlyAspS :  255
        |   |||!::|||||||||:!:||||||  !:!!  !||||||  !|||!.!  !||||||.
        eAlaGlyArgGlyThrValValThrGlyArgValGluSerGlyValIleLysThrGlyAspG
 3232 : CGCCGGCCGCGGCACGGTGGTCACGGGCCGCGTCGAGTCCGGCGTCATCAAGACGGGCGACG : 3170

  256 : erValGluIleProAlaLeu :  261
        .!:!!||||||! !!.!|||
        luIleGluIleLeuGlyLeu
 3169 : AGATCGAGATCCTCGGCCTC : 3150

vulgar: SPP00000038_1.0 90 261 . scaffold_7:subseq(1347524,6866) 3662 3149 - 211 M 44 132 G 0 3 M 33 99 G 1 0 M 93 279
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome 1.4.0
##date 2009-03-17
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
scaffold_7:subseq(1347524,6866)	exonerate:protein2genome	gene	3150	3662	211	-	.	gene_id 1 ; sequence SPP00000038_1.0 ; gene_orientation .
scaffold_7:subseq(1347524,6866)	exonerate:protein2genome	cds	3150	3662	.	-	.	
scaffold_7:subseq(1347524,6866)	exonerate:protein2genome	exon	3150	3662	.	-	.	insertions 3 ; deletions 1
scaffold_7:subseq(1347524,6866)	exonerate:protein2genome	similarity	3150	3662	211	-	.	alignment_id 1 ; Query SPP00000038_1.0 ; Align 3663 91 132 ; Align 3528 135 99 ; Align 3429 169 279
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis
