Command line: [exonerate -m p2g --showtargetgff -q SelT.fa -t SelT1_Celegans_scaffold44_seqDNA.fa]
Hostname: [localhost]

C4 Alignment:
------------
         Query: SPP00000116_1.0 # Protein # Selenoprotein T (SelT) # Mus musculus # Complete
        Target: scaffold_44:subseq(137414,6389)
         Model: protein2genome
     Raw score: 152
   Query range: 43 -> 175
  Target range: 2993 -> 3389

   44 : GlnIleCysValSerUnkGlyTyrArgArgValPheGluGluTyrMetArgValIleSerGl :   64
        :!!:!!|||..!|||   |||   !:!|||  !!:!   |||   ! !!:! !!:!!..!.!
        LysLeuCysThrSer***GlyThrGlnArgAsnTyrLeuGluLeuArgLysPheLeuGluAs
 2994 : AAGCTCTGCACGAGCTGAGGCACGCAGAGGAACTACCTCGAGCTGAGGAAGTTCCTCGAAGA : 3054

   65 : nArgTyrProAspIleArg<->IleGluGlyGluAsnTyrLeuProGlnProIleTyrArgH :   84
        .  !||||||! !:!!|||   :!!! !!.!|||.!.|||! !|||! ! !!:!!  !  ! 
        pAlaTyrProGlyLeuArgSerValAlaAlaGluGlnTyrProProProAlaValGlyValP
 3055 : CGCGTACCCCGGCCTCCGGTCCGTCGCGGCCGAGCAGTACCCGCCGCCGGCCGTCGGCGTGT : 3117

   85 : isIleAlaSerPheLeuSerValPheLysLeuValLeuIleGlyLeuIleIleValGlyLys :  104
         !   |||..!  !  !.!!:!!  !:!!:!!!.!! !:!:!.!|||:!!:!!! !|||:!!
        heAlaAlaGlnAlaAlaGlyMetAlaGlnValAlaCysValAlaLeuLeuLeuGlyGlyGlu
 3118 : TCGCGGCGCAGGCCGCGGGCATGGCCCAGGTCGCCTGCGTGGCGCTGCTCCTCGGCGGCGAG : 3177

  105 : AspProPheAlaPhePheGlyMetGlnAlaProSerIleTrpGlnTrpGlyGlnGluAsnLy :  125
         !   !|||  !.!!||||||  !  !.!!|||.!!   !::!!.!  ! !  !||||||||
        LysValPheGlnLeuPheGlyAlaAlaThrProGlyTrpTyrHisSerValAlaGluAsnLy
 3178 : AAGGTCTTCCAGCTCTTCGGCGCGGCGACGCCGGGCTGGTACCACTCCGTCGCGGAGAACAA : 3240

  126 : sValTyrAlaCysMetMetValPhePheLeuSerAsnMetIleGluAsnGlnCysMetSerT :  146
        |:!!   |||! !  !   |||   !:::!!:!!|||!  :!!! !  !|||   :!::!!|
        sMetMetAlaPheGlyAlaVal---TrpMetAlaAsnAsnValAlaAlaGlnMetValAlaT
 3241 : GATGATGGCCTTTGGGGCCGTC---TGGATGGCGAACAACGTCGCGGCCCAGATGGTCGCGA : 3300

  147 : hrGlyAlaPheGluIleThrLeuAsnAspValProValTrpSerLysLeuGluSerGlyHis :  166
        |||||||||||||||||  !:!!|||! !! !! !!.!!::||||||||||||!!!|||!.!
        hrGlyAlaPheGluIleHisValAsnGlyGluLeuAlaPheSerLysLeuGluThrGlyArg
 3301 : CGGGCGCCTTCGAGATCCACGTCAACGGCGAGCTCGCCTTCTCCAAGCTCGAGACGGGCCGC : 3360

  167 : LeuProSerMetGlnGlnLeuValGln :  175
        |||||||||  !  !.!.:!!|||!::
        LeuProSerAlaAlaAspValValArg
 3361 : CTGCCGTCCGCGGCGGACGTCGTCCGC : 3389

vulgar: SPP00000116_1.0 43 175 . scaffold_44:subseq(137414,6389) 2993 3389 + 152 M 27 81 G 0 3 M 62 186 G 1 0 M 42 126
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome 1.4.0
##date 2009-02-26
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
scaffold_44:subseq(137414,6389)	exonerate:protein2genome	gene	2994	3389	152	+	.	gene_id 1 ; sequence SPP00000116_1.0 ; gene_orientation .
scaffold_44:subseq(137414,6389)	exonerate:protein2genome	cds	2994	3389	.	+	.	
scaffold_44:subseq(137414,6389)	exonerate:protein2genome	exon	2994	3389	.	+	.	insertions 3 ; deletions 1
scaffold_44:subseq(137414,6389)	exonerate:protein2genome	similarity	2994	3389	152	+	.	alignment_id 1 ; Query SPP00000116_1.0 ; Align 2994 44 81 ; Align 3078 71 186 ; Align 3264 134 126
# --- END OF GFF DUMP ---
#

C4 Alignment:
------------
         Query: SPP00000025_1.0 # Protein # Selenoprotein T (SelT) # Homo sapiens # Complete
        Target: scaffold_44:subseq(137414,6389)
         Model: protein2genome
     Raw score: 152
   Query range: 43 -> 175
  Target range: 2993 -> 3389

   44 : GlnIleCysValSerUnkGlyTyrArgArgValPheGluGluTyrMetArgValIleSerGl :   64
        :!!:!!|||..!|||   |||   !:!|||  !!:!   |||   ! !!:! !!:!!..!.!
        LysLeuCysThrSer***GlyThrGlnArgAsnTyrLeuGluLeuArgLysPheLeuGluAs
 2994 : AAGCTCTGCACGAGCTGAGGCACGCAGAGGAACTACCTCGAGCTGAGGAAGTTCCTCGAAGA : 3054

   65 : nArgTyrProAspIleArg<->IleGluGlyGluAsnTyrLeuProGlnProIleTyrArgH :   84
        .  !||||||! !:!!|||   :!!! !!.!|||.!.|||! !|||! ! !!:!!  !  ! 
        pAlaTyrProGlyLeuArgSerValAlaAlaGluGlnTyrProProProAlaValGlyValP
 3055 : CGCGTACCCCGGCCTCCGGTCCGTCGCGGCCGAGCAGTACCCGCCGCCGGCCGTCGGCGTGT : 3117

   85 : isIleAlaSerPheLeuSerValPheLysLeuValLeuIleGlyLeuIleIleValGlyLys :  104
         !   |||..!  !  !.!!:!!  !:!!:!!!.!! !:!:!.!|||:!!:!!! !|||:!!
        heAlaAlaGlnAlaAlaGlyMetAlaGlnValAlaCysValAlaLeuLeuLeuGlyGlyGlu
 3118 : TCGCGGCGCAGGCCGCGGGCATGGCCCAGGTCGCCTGCGTGGCGCTGCTCCTCGGCGGCGAG : 3177

  105 : AspProPheAlaPhePheGlyMetGlnAlaProSerIleTrpGlnTrpGlyGlnGluAsnLy :  125
         !   !|||  !.!!||||||  !  !.!!|||.!!   !::!!.!  ! !  !||||||||
        LysValPheGlnLeuPheGlyAlaAlaThrProGlyTrpTyrHisSerValAlaGluAsnLy
 3178 : AAGGTCTTCCAGCTCTTCGGCGCGGCGACGCCGGGCTGGTACCACTCCGTCGCGGAGAACAA : 3240

  126 : sValTyrAlaCysMetMetValPhePheLeuSerAsnMetIleGluAsnGlnCysMetSerT :  146
        |:!!   |||! !  !   |||   !:::!!:!!|||!  :!!! !  !|||   :!::!!|
        sMetMetAlaPheGlyAlaVal---TrpMetAlaAsnAsnValAlaAlaGlnMetValAlaT
 3241 : GATGATGGCCTTTGGGGCCGTC---TGGATGGCGAACAACGTCGCGGCCCAGATGGTCGCGA : 3300

  147 : hrGlyAlaPheGluIleThrLeuAsnAspValProValTrpSerLysLeuGluSerGlyHis :  166
        |||||||||||||||||  !:!!|||! !! !! !!.!!::||||||||||||!!!|||!.!
        hrGlyAlaPheGluIleHisValAsnGlyGluLeuAlaPheSerLysLeuGluThrGlyArg
 3301 : CGGGCGCCTTCGAGATCCACGTCAACGGCGAGCTCGCCTTCTCCAAGCTCGAGACGGGCCGC : 3360

  167 : LeuProSerMetGlnGlnLeuValGln :  175
        |||||||||  !  !.!.:!!|||!::
        LeuProSerAlaAlaAspValValArg
 3361 : CTGCCGTCCGCGGCGGACGTCGTCCGC : 3389

vulgar: SPP00000025_1.0 43 175 . scaffold_44:subseq(137414,6389) 2993 3389 + 152 M 27 81 G 0 3 M 62 186 G 1 0 M 42 126
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome 1.4.0
##date 2009-02-26
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
scaffold_44:subseq(137414,6389)	exonerate:protein2genome	gene	2994	3389	152	+	.	gene_id 1 ; sequence SPP00000025_1.0 ; gene_orientation .
scaffold_44:subseq(137414,6389)	exonerate:protein2genome	cds	2994	3389	.	+	.	
scaffold_44:subseq(137414,6389)	exonerate:protein2genome	exon	2994	3389	.	+	.	insertions 3 ; deletions 1
scaffold_44:subseq(137414,6389)	exonerate:protein2genome	similarity	2994	3389	152	+	.	alignment_id 1 ; Query SPP00000025_1.0 ; Align 2994 44 81 ; Align 3078 71 186 ; Align 3264 134 126
# --- END OF GFF DUMP ---
#

C4 Alignment:
------------
         Query: SPP00000061_1.0 # Protein # Selenoprotein T2 (SelT2) # Caenorhabditis elegans # Complete
        Target: scaffold_44:subseq(137414,6389)
         Model: protein2genome
     Raw score: 110
   Query range: 70 -> 200
  Target range: 2981 -> 3371

   71 : LysLeuThrIleLeuTyrCysValSerCysGlyTyrLysGlnAlaPheAsnGlnPheTyrGl :   91
        :!!:!!  !:!!  !  !|||..!|||!! |||   :!!::!  !!:!  !:!!.!.   :!
        GluValLeuValLysLeuCysThrSer***GlyThrGlnArgAsnTyrLeuGluLeuArgLy
 2982 : gAGGTGCTCGTCAAGCTCTGCACGAGCTGAGGCACGCAGAGGAACTACCTCGAGCTGAGGAA : 3042

   92 : uPheAlaLysGluLysTyrProGlyLeu<->ValIleGluGlyGlyAsnPheSerProAspP :  111
        !|||  !:!!!!:  !||||||||||||     !:!!! !!.!! !.!.!:! !!|||    
        sPheLeuGluAspAlaTyrProGlyLeuArgSerValAlaAlaGluGlnTyrProProProA
 3043 : GTTCCTCGAAGACGCGTACCCCGGCCTCCGGTCCGTCGCGGCCGAGCAGTACCCGCCGCCGG : 3105

  112 : heTrpLysGlyCysLeuAlaGlnIleValGlyValAlaLysIleGlyLeuIleAlaIleVal :  131
         !      ! !! !  !||||||  !!.!|||:!!|||:!!:!!!.!! !:!:|||:!::!!
        laValGlyValPheAlaAlaGlnAlaAlaGlyMetAlaGlnValAlaCysValAlaLeuLeu
 3106 : CCGTCGGCGTGTTCGCGGCGCAGGCCGCGGGCATGGCCCAGGTCGCCTGCGTGGCGCTGCTC : 3165

  132 : IleThrGlySerAsnProPheGluTyrIleGlyPheGlyTyrProGlnIleLeuGlnThrAl :  152
        :!!  !|||..!!!.  !|||:!!  !.!!|||   !.!   |||      ! !!!.:!!!.
        LeuGlyGlyGluLysValPheGlnLeuPheGlyAlaAlaThrProGlyTrpTyrHisSerVa
 3166 : CTCGGCGGCGAGAAGGTCTTCCAGCTCTTCGGCGCGGCGACGCCGGGCTGGTACCACTCCGT : 3228

  153 : aHisTyrAsnArgPheSerTyrSerLeuLeuValPheMetIleGlyAsnLeuPheGluSerT :  173
        !    ! |||!:!.!.! !  !! !  !  !|||!::|||   ..!|||:!!   ! !:!! 
        lAlaGluAsnLysMetMetAlaPheGlyAlaValTrpMetAlaAsnAsnVal---AlaAlaG
 3229 : CGCGGAGAACAAGATGATGGCCTTTGGGGCCGTCTGGATGGCGAACAACGTC---GCGGCCC : 3288

  174 : hrLeuSerSerThrGlyAlaPheGluIlePheLeuGlyAspLysGlnIleTrpSerLysIle :  193
         !:!!  !:!!||||||||||||||||||  !:!!..!! !:!!!    !!::||||||:!!
        lnMetValAlaThrGlyAlaPheGluIleHisValAsnGlyGluLeuAlaPheSerLysLeu
 3289 : AGATGGTCGCGACGGGCGCCTTCGAGATCCACGTCAACGGCGAGCTCGCCTTCTCCAAGCTC : 3348

  194 : SerLysGluArgValProThr :  200
        ..!! !!  |||:!!|||:!!
        GluThrGlyArgLeuProSer
 3349 : GAGACGGGCCGCCTGCCGTCC : 3371

vulgar: SPP00000061_1.0 70 200 . scaffold_44:subseq(137414,6389) 2981 3371 + 110 M 30 90 G 0 3 M 69 207 G 1 0 M 30 90
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome 1.4.0
##date 2009-02-26
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
scaffold_44:subseq(137414,6389)	exonerate:protein2genome	gene	2982	3371	110	+	.	gene_id 1 ; sequence SPP00000061_1.0 ; gene_orientation .
scaffold_44:subseq(137414,6389)	exonerate:protein2genome	cds	2982	3371	.	+	.	
scaffold_44:subseq(137414,6389)	exonerate:protein2genome	exon	2982	3371	.	+	.	insertions 3 ; deletions 1
scaffold_44:subseq(137414,6389)	exonerate:protein2genome	similarity	2982	3371	110	+	.	alignment_id 1 ; Query SPP00000061_1.0 ; Align 2982 71 90 ; Align 3075 101 207 ; Align 3282 171 90
# --- END OF GFF DUMP ---
#

C4 Alignment:
------------
         Query: SPP00000060_1.0 # Protein # Selenoprotein T1 (SelT1) # Caenorhabditis elegans # Complete
        Target: scaffold_44:subseq(137414,6389)
         Model: protein2genome
     Raw score: 160
   Query range: 102 -> 232
  Target range: 2999 -> 3389

  103 : CysValSerCysGlyTyrLysGlnAlaPheAspGlnPheThrThrPheAlaLysGluLysTy :  123
        |||..!|||!! |||   :!!::!  !!:!  !:!!.!.! !! !|||  !:!!!!:  !||
        CysThrSer***GlyThrGlnArgAsnTyrLeuGluLeuArgLysPheLeuGluAspAlaTy
 3000 : TGCACGAGCTGAGGCACGCAGAGGAACTACCTCGAGCTGAGGAAGTTCCTCGAAGACGCGTA : 3060

  124 : rProAsnMet<->ProIleGluGlyAlaAsnPheAlaProValLeuTrpLysAlaTyrValA :  143
        ||||..!:!:    !!:!!! !!.!! !.!.!:! !!|||  !  !      !.!!:!!.!|
        rProGlyLeuArgSerValAlaAlaGluGlnTyrProProProAlaValGlyValPheAlaA
 3061 : CCCCGGCCTCCGGTCCGTCGCGGCCGAGCAGTACCCGCCGCCGGCCGTCGGCGTGTTCGCGG : 3123

  144 : laGlnAlaLeuSerPheValLysMetAlaValLeuValLeuValLeuGlyGlyIleAsnPro :  163
        ||||||||  !.!!.!.!.!:!!:!:|||  !:!!!.!|||:!!|||||||||   !!.  !
        laGlnAlaAlaGlyMetAlaGlnValAlaCysValAlaLeuLeuLeuGlyGlyGluLysVal
 3124 : CGCAGGCCGCGGGCATGGCCCAGGTCGCCTGCGTGGCGCTGCTCCTCGGCGGCGAGAAGGTC : 3183

  164 : PheGluArgPheGlyLeuGlyTyrProGlnIleLeuGlnHisAlaHisGlyAsnLysMetSe :  184
        |||:!!! !||||||  !!.!   |||      ! !!!.  !!.!   ! !|||||||||! 
        PheGlnLeuPheGlyAlaAlaThrProGlyTrpTyrHisSerValAlaGluAsnLysMetMe
 3184 : TTCCAGCTCTTCGGCGCGGCGACGCCGGGCTGGTACCACTCCGTCGCGGAGAACAAGATGAT : 3246

  185 : rSerCysMetLeuValPheMetLeuGlyAsnLeuValGluGlnSerLeuIleSerThrGlyA :  205
        !:!!! !  !  !|||!::|||  !..!|||:!!!.!!  |||   :!!:!!:!!|||||||
        tAlaPheGlyAlaValTrpMetAlaAsnAsnValAlaAlaGln---MetValAlaThrGlyA
 3247 : GGCCTTTGGGGCCGTCTGGATGGCGAACAACGTCGCGGCCCAG---ATGGTCGCGACGGGCG : 3306

  206 : laPheGluValTyrLeuGlyAsnGluGlnIleTrpSerLysIleGluSerGlyArgValPro :  225
        ||||||||:!!:!!:!!..!..!|||!    !!::||||||:!!|||!!!||||||:!!|||
        laPheGluIleHisValAsnGlyGluLeuAlaPheSerLysLeuGluThrGlyArgLeuPro
 3307 : CCTTCGAGATCCACGTCAACGGCGAGCTCGCCTTCTCCAAGCTCGAGACGGGCCGCCTGCCG : 3366

  226 : SerProGlnGluPheMetGln :  232
        ||| !!  !!!: !!:!:!::
        SerAlaAlaAspValValArg
 3367 : TCCGCGGCGGACGTCGTCCGC : 3389

vulgar: SPP00000060_1.0 102 232 . scaffold_44:subseq(137414,6389) 2999 3389 + 160 M 24 72 G 0 3 M 72 216 G 1 0 M 33 99
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome 1.4.0
##date 2009-02-26
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
scaffold_44:subseq(137414,6389)	exonerate:protein2genome	gene	3000	3389	160	+	.	gene_id 1 ; sequence SPP00000060_1.0 ; gene_orientation .
scaffold_44:subseq(137414,6389)	exonerate:protein2genome	cds	3000	3389	.	+	.	
scaffold_44:subseq(137414,6389)	exonerate:protein2genome	exon	3000	3389	.	+	.	insertions 3 ; deletions 1
scaffold_44:subseq(137414,6389)	exonerate:protein2genome	similarity	3000	3389	160	+	.	alignment_id 1 ; Query SPP00000060_1.0 ; Align 3000 103 72 ; Align 3075 127 216 ; Align 3291 200 99
# --- END OF GFF DUMP ---
#

C4 Alignment:
------------
         Query: SPP00000054_1.0 # Protein # Selenoprotein T (SelT) # Anopheles gambiae # Complete
        Target: scaffold_44:subseq(137414,6389)
         Model: protein2genome
     Raw score: 136
   Query range: 41 -> 180
  Target range: 2966 -> 3383

   42 : GlyAsnTyrGlyAlaThrMetThrPheLeuTyrCysTyrSerCysGlyTyrArgLysAlaPh :   62
        ...|||      |||  !:!!  ! !!  !  !|||   |||!! |||   !:!!:!  !!:
        AlaAsnGlyAspAlaGluValLeuValLysLeuCysThrSer***GlyThrGlnArgAsnTy
 2967 : gccaacggcgacgccgAGGTGCTCGTCAAGCTCTGCACGAGCTGAGGCACGCAGAGGAACTA : 3027

   63 : eAspAspTyrHisAsnLeuIleLeuGluLysTyrProGluIle<->ThrIleArgGlySerA :   82
        !  !!!:   ...!!.!!!:!!  !!!:  !||||||!  :!!   :!!:!!  !!.!..!.
        rLeuGluLeuArgLysPheLeuGluAspAlaTyrProGlyLeuArgSerValAlaAlaGluG
 3028 : CCTCGAGCTGAGGAAGTTCCTCGAAGACGCGTACCCCGGCCTCCGGTCCGTCGCGGCCGAGC : 3090

   83 : snTyrAspProSerGlyValAsnMetLeuLeuSerLysValLeuLeuValThrLysLeuLeu :  102
        !.|||   ||| !!!.!|||..!:!!!!!  !:!!:!!!.!  !  !:!!.!!:!!:!!  !
        lnTyrProProProAlaValGlyValPheAlaAlaGlnAlaAlaGlyMetAlaGlnValAla
 3091 : AGTACCCGCCGCCGGCCGTCGGCGTGTTCGCGGCGCAGGCCGCGGGCATGGCCCAGGTCGCC : 3150

  103 : LeuIleAlaAlaLeuMetSerAsnTyrAspIleGlyArgTyrIleGlyAsnProPheAlaGl :  123
        ! !:!:|||  !|||:!:.!!..! !  ! :!!  !!:!  !.!!|||    !!    !!||
        CysValAlaLeuLeuLeuGlyGlyGluLysValPheGlnLeuPheGlyAlaAlaThrProGl
 3151 : TGCGTGGCGCTGCTCCTCGGCGGCGAGAAGGTCTTCCAGCTCTTCGGCGCGGCGACGCCGGG : 3213

  124 : yTrpTrpGlnTrpCysPheAsnAsnLysLeuTyrAlaSerMetMetIlePhePheLeuGlyA :  144
        ||||!::!!.!    !   .!.||||||:!!   |||! !  !   :!!   !:::!!!.!|
        yTrpTyrHisSerValAlaGluAsnLysMetMetAlaPheGlyAlaVal---TrpMetAlaA
 3214 : CTGGTACCACTCCGTCGCGGAGAACAAGATGATGGCCTTTGGGGCCGTC---TGGATGGCGA : 3273

  145 : snThrLeuGluAlaGlnLeuIleSerSerGlyAlaPheGluIleThrLeuAsnAspValPro :  164
        ||!.!:!!! !||||||:!!:!!:!!!!!|||||||||||||||  !:!!|||! !! !! !
        snAsnValAlaAlaGlnMetValAlaThrGlyAlaPheGluIleHisValAsnGlyGluLeu
 3274 : ACAACGTCGCGGCCCAGATGGTCGCGACGGGCGCCTTCGAGATCCACGTCAACGGCGAGCTC : 3333

  165 : ValTrpSerLysLeuGluThrGlyArgPheProAlaProGlnGluMet :  180
        !.!!::|||||||||||||||||||||.!.|||:!! !!  !!!::!:
        AlaPheSerLysLeuGluThrGlyArgLeuProSerAlaAlaAspVal
 3334 : GCCTTCTCCAAGCTCGAGACGGGCCGCCTGCCGTCCGCGGCGGACGTC : 3383

vulgar: SPP00000054_1.0 41 180 . scaffold_44:subseq(137414,6389) 2966 3383 + 136 M 35 105 G 0 3 M 63 189 G 1 0 M 40 120
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome 1.4.0
##date 2009-02-26
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
scaffold_44:subseq(137414,6389)	exonerate:protein2genome	gene	2967	3383	136	+	.	gene_id 1 ; sequence SPP00000054_1.0 ; gene_orientation .
scaffold_44:subseq(137414,6389)	exonerate:protein2genome	cds	2967	3383	.	+	.	
scaffold_44:subseq(137414,6389)	exonerate:protein2genome	exon	2967	3383	.	+	.	insertions 3 ; deletions 1
scaffold_44:subseq(137414,6389)	exonerate:protein2genome	similarity	2967	3383	136	+	.	alignment_id 1 ; Query SPP00000054_1.0 ; Align 2967 42 105 ; Align 3075 77 189 ; Align 3264 141 120
# --- END OF GFF DUMP ---
#

C4 Alignment:
------------
         Query: SPP00000046_1.0 # Protein # Selenoprotein T (SelT) # Drosophila melanogaster # Complete
        Target: scaffold_44:subseq(137414,6389)
         Model: protein2genome
     Raw score: 140
   Query range: 48 -> 172
  Target range: 2999 -> 3371

   49 : CysTyrSerCysGlyTyrArgLysAlaPheGluAspTyrValGlyLeuLeuGlyGluLysTy :   69
        |||   |||!! |||   !:!!:!  !!:!   !!:     !  !!!!|||! !!!:  !||
        CysThrSer***GlyThrGlnArgAsnTyrLeuGluLeuArgLysPheLeuGluAspAlaTy
 3000 : TGCACGAGCTGAGGCACGCAGAGGAACTACCTCGAGCTGAGGAAGTTCCTCGAAGACGCGTA : 3060

   70 : rProGlnIleGln<->ValAsnGlyGlyAsnTyrAspProProGlyLeuAsnTyrTyrLeuS :   89
        ||||   :!!!:!   |||   !.!! !.!.|||   ||||||!.!:!!..!   !:!  !:
        rProGlyLeuArgSerValAlaAlaGluGlnTyrProProProAlaValGlyValPheAlaA
 3061 : CCCCGGCCTCCGGTCCGTCGCGGCCGAGCAGTACCCGCCGCCGGCCGTCGGCGTGTTCGCGG : 3123

   90 : erLysMetIlePheAlaLeuLysIleIleIleIleValSerValValSerAlaValSerPro :  109
        !!:!!        !  !  !:!!:!!  !  !:!:!.!  !:!!:!!.!!!.!! !!.!  !
        laGlnAlaAlaGlyMetAlaGlnValAlaCysValAlaLeuLeuLeuGlyGlyGluLysVal
 3124 : CGCAGGCCGCGGGCATGGCCCAGGTCGCCTGCGTGGCGCTGCTCCTCGGCGGCGAGAAGGTC : 3183

  110 : PheThrPheLeuGlyLeuAsnThrProSerTrpTrpSerHisMetGlnAlaAsnLysIleTy :  130
        |||  !.!!!!!|||  !   ||||||.!!|||!::  !  !:!:  !! !||||||!!:  
        PheGlnLeuPheGlyAlaAlaThrProGlyTrpTyrHisSerValAlaGluAsnLysMetMe
 3184 : TTCCAGCTCTTCGGCGCGGCGACGCCGGGCTGGTACCACTCCGTCGCGGAGAACAAGATGAT : 3246

  131 : rAlaCysMetMetIlePhePheLeuGlyAsnMetLeuGluAlaGlnLeuIleSerSerGlyA :  151
         |||! !  !   :!!   !:::!!!.!|||!  :!!! !||||||:!!:!!:!!!!!||||
        tAlaPheGlyAlaVal---TrpMetAlaAsnAsnValAlaAlaGlnMetValAlaThrGlyA
 3247 : GGCCTTTGGGGCCGTC---TGGATGGCGAACAACGTCGCGGCCCAGATGGTCGCGACGGGCG : 3306

  152 : laPheGluIleThrLeuAsnAspValProValTrpSerLysLeuGlnThrGlyArgPhePro :  171
        |||||||||||  !:!!|||! !! !! !!.!!::|||||||||:!!|||||||||.!.|||
        laPheGluIleHisValAsnGlyGluLeuAlaPheSerLysLeuGluThrGlyArgLeuPro
 3307 : CCTTCGAGATCCACGTCAACGGCGAGCTCGCCTTCTCCAAGCTCGAGACGGGCCGCCTGCCG : 3366

  172 : Ser :  172
        |||
        Ser
 3367 : TCC : 3371

vulgar: SPP00000046_1.0 48 172 . scaffold_44:subseq(137414,6389) 2999 3371 + 140 M 25 75 G 0 3 M 62 186 G 1 0 M 36 108
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome 1.4.0
##date 2009-02-26
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
scaffold_44:subseq(137414,6389)	exonerate:protein2genome	gene	3000	3371	140	+	.	gene_id 1 ; sequence SPP00000046_1.0 ; gene_orientation .
scaffold_44:subseq(137414,6389)	exonerate:protein2genome	cds	3000	3371	.	+	.	
scaffold_44:subseq(137414,6389)	exonerate:protein2genome	exon	3000	3371	.	+	.	insertions 3 ; deletions 1
scaffold_44:subseq(137414,6389)	exonerate:protein2genome	similarity	3000	3371	140	+	.	alignment_id 1 ; Query SPP00000046_1.0 ; Align 3000 49 75 ; Align 3078 74 186 ; Align 3264 137 108
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis
