Command line: [exonerate -m p2g --showtargetgff -q SelR.fa -t SelR_scaffold1_seqDNA.fa]
Hostname: [localhost]

C4 Alignment:
------------
         Query: SPP00000089_1.0 # Protein # Selenoprotein R  (SelR) # Drosophila melanogaster # Complete
        Target: scaffold_1:subseq(161152,3428) [revcomp]
         Model: protein2genome
     Raw score: 109
   Query range: 40 -> 76
  Target range: 284 -> 176

  41 : AsnLysHisTyrGluLysGlyValTyrGlnCysIleValCysHisGlnAspLeuPheSerSerG :  62
       !..|||:!!   :!!   |||!.!|||:!!|||  !! !|||  !  !!!:|||!:!! !:!!.
       ThrLysTyrProGlnLeuGlyAlaTyrGluCysAlaGlyCysGlyAlaGluLeuTyrTyrAlaA
 284 : ACGAAGTACCCGCAGCTCGGCGCCTACGAGTGCGCCGGCTGCGGCGCGGAGCTCTACTACGCGC : 221

  63 : luThrLysTyrAspSerGlyCysGlyTrpProAlaPheAsnAsp :  76
       ...!!|||!:!||||||||||||||||||||||||||| !!|||
       rgAlaLysPheAspSerGlyCysGlyTrpProAlaPheTyrAsp
 220 : GCGCGAAGTTCGACAGCGGCTGCGGCTGGCCCGCGTTCTACGAC : 177

vulgar: SPP00000089_1.0 40 76 . scaffold_1:subseq(161152,3428) 284 176 - 109 M 36 108
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome 1.4.0
##date 2009-02-26
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
scaffold_1:subseq(161152,3428)	exonerate:protein2genome	gene	177	284	109	-	.	gene_id 1 ; sequence SPP00000089_1.0 ; gene_orientation .
scaffold_1:subseq(161152,3428)	exonerate:protein2genome	cds	177	284	.	-	.	
scaffold_1:subseq(161152,3428)	exonerate:protein2genome	exon	177	284	.	-	.	insertions 0 ; deletions 0
scaffold_1:subseq(161152,3428)	exonerate:protein2genome	similarity	177	284	109	-	.	alignment_id 1 ; Query SPP00000089_1.0 ; Align 285 41 108
# --- END OF GFF DUMP ---
#

C4 Alignment:
------------
         Query: SPP00000059_1.0 # Protein # Selenoprotein R  (SelR) # Caenorhabditis elegans # Complete
        Target: scaffold_1:subseq(161152,3428) [revcomp]
         Model: protein2genome
     Raw score: 105
   Query range: 59 -> 93
  Target range: 272 -> 170

  60 : GluLysGlyArgTyrValCysLeuCysCysGlySerGluLeuPheAsnSerAspAlaLysPheT :  81
       :!!   |||  !|||! !|||  ! !!||||||:!!||||||!:! !!:!!  !||||||||| 
       GlnLeuGlyAlaTyrGluCysAlaGlyCysGlyAlaGluLeuTyrTyrAlaArgAlaLysPheA
 272 : CAGCTCGGCGCCTACGAGTGCGCCGGCTGCGGCGCGGAGCTCTACTACGCGCGCGCGAAGTTCG : 209

  82 : rpAlaGlyCysGlyTrpProAlaPheSerGluSerVal :  93
         ::!|||||||||||||||||||||! !!!:.!!|||
       spSerGlyCysGlyTrpProAlaPheTyrAspGlyVal
 208 : ACAGCGGCTGCGGCTGGCCCGCGTTCTACGACGGCGTC : 171

vulgar: SPP00000059_1.0 59 93 . scaffold_1:subseq(161152,3428) 272 170 - 105 M 34 102
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome 1.4.0
##date 2009-02-26
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
scaffold_1:subseq(161152,3428)	exonerate:protein2genome	gene	171	272	105	-	.	gene_id 1 ; sequence SPP00000059_1.0 ; gene_orientation .
scaffold_1:subseq(161152,3428)	exonerate:protein2genome	cds	171	272	.	-	.	
scaffold_1:subseq(161152,3428)	exonerate:protein2genome	exon	171	272	.	-	.	insertions 0 ; deletions 0
scaffold_1:subseq(161152,3428)	exonerate:protein2genome	similarity	171	272	105	-	.	alignment_id 1 ; Query SPP00000059_1.0 ; Align 273 60 102
# --- END OF GFF DUMP ---
#

C4 Alignment:
------------
         Query: SPP00000077_1.0 # Protein # Selenoprotein R  (SelR) # Saccharomyces cerevisiae # Complete
        Target: scaffold_1:subseq(161152,3428) [revcomp]
         Model: protein2genome
     Raw score: 187
   Query range: 72 -> 144
  Target range: 272 -> 65

  73 : GluSerGlyValTyrHisCysAlaAsnCysAspArgProLeuTyrSerSerLysAlaLysPheA :  94
       :!!  !|||!.!|||.!.||||||..!|||! !  !  !||||||! !:!!:::||||||||||
       GlnLeuGlyAlaTyrGluCysAlaGlyCysGlyAlaGluLeuTyrTyrAlaArgAlaLysPheA
 272 : CAGCTCGGCGCCTACGAGTGCGCCGGCTGCGGCGCGGAGCTCTACTACGCGCGCGCGAAGTTCG : 209

  95 : spAlaArgCysGlyTrpProAlaPheTyrGluGluValSerProGlyAlaIleThrTyrHisAr : 115
       ||::! !!|||||||||||||||||||||!!:!  |||   ||||||||||||  ! !    ! 
       spSerGlyCysGlyTrpProAlaPheTyrAspGlyVal---ProGlyAlaIleGluGluValPr
 208 : ACAGCGGCTGCGGCTGGCCCGCGTTCTACGACGGCGTC---CCCGGCGCCATCGAGGAGGTGCC : 149

 116 : gAspAsnSerLeuMetProAlaArgValGluIleCysCysAlaArgCysGlyGlyHisLeuGly : 136
       !|||      :!!     !  !||||||||||||  !||||||!:!|||  !||||||||||||
       oAsp------ValAspGlyTyrArgValGluIleValCysAlaLysCysLysGlyHisLeuGly
 148 : CGAC------GTCGACGGCTACCGCGTCGAGATCGTCTGCGCCAAGTGCAAGGGCCACCTGGGG :  92

 137 : HisValPheGluGlyGluGlyTrp : 144
       |||||||||:!!|||||||||!::
       HisValPheLysGlyGluGlyPhe
  91 : CACGTCTTCAAGGGCGAGGGCTTC :  66

vulgar: SPP00000077_1.0 72 144 . scaffold_1:subseq(161152,3428) 272 65 - 187 M 34 102 G 1 0 M 9 27 G 2 0 M 26 78
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome 1.4.0
##date 2009-02-26
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
scaffold_1:subseq(161152,3428)	exonerate:protein2genome	gene	66	272	187	-	.	gene_id 1 ; sequence SPP00000077_1.0 ; gene_orientation .
scaffold_1:subseq(161152,3428)	exonerate:protein2genome	cds	66	272	.	-	.	
scaffold_1:subseq(161152,3428)	exonerate:protein2genome	exon	66	272	.	-	.	insertions 0 ; deletions 3
scaffold_1:subseq(161152,3428)	exonerate:protein2genome	similarity	66	272	187	-	.	alignment_id 1 ; Query SPP00000077_1.0 ; Align 273 73 102 ; Align 171 108 27 ; Align 144 119 78
# --- END OF GFF DUMP ---
#

C4 Alignment:
------------
         Query: SPP00000023_1.0 # Protein # Methionine-R-sufoxide reductase 3 (SelR3) # Homo sapiens # Complete
        Target: scaffold_1:subseq(161152,3428) [revcomp]
         Model: protein2genome
     Raw score: 158
   Query range: 75 -> 168
  Target range: 284 -> 8

  76 : ThrHisHisLysAspProGlyIleTyrLysCysValValCysGlyThrProLeuPheLysSerG :  97
       ||| ! :!!  !.!.! !|||  !|||:!!|||!.!! !||||||.!!  !|||!:! ! :!!.
       ThrLysTyrProGlnLeuGlyAlaTyrGluCysAlaGlyCysGlyAlaGluLeuTyrTyrAlaA
 284 : ACGAAGTACCCGCAGCTCGGCGCCTACGAGTGCGCCGGCTGCGGCGCGGAGCTCTACTACGCGC : 221

  98 : luThrLysPheAspSerGlySerGlyTrpProSerPheHisAspValIleAsnSerGluAlaIl : 118
       ...!!|||||||||||||||!!!|||||||||:!!|||:!!|||! !:!!  !.!!!    !  
       rgAlaLysPheAspSerGlyCysGlyTrpProAlaPheTyrAspGlyValProGlyAlaIleGl
 220 : GCGCGAAGTTCGACAGCGGCTGCGGCTGGCCCGCGTTCTACGACGGCGTCCCCGGCGCCATCGA : 158

 119 : eThrPheThrAspAspPheSerTyrGlyMetHisArgValGluThrSerCysSerGlnCysGly : 139
          ! !  !!|||! !  !.!!|||         |||||||||! !  !|||:!!:!!|||  !
       uGluValProAspValAspGlyTyr---------ArgValGluIleValCysAlaLysCysLys
 157 : GGAGGTGCCCGACGTCGACGGCTAC---------CGCGTCGAGATCGTCTGCGCCAAGTGCAAG : 104

 140 : AlaHisLeuGlyHisIlePhe<-><->AspAspGlyProArgProThrGlyLysArgTyrCysI : 159
       !.!||||||||||||:!!|||      !!:! !  !|||  !||||||! !  !|||:!!|||:
       GlyHisLeuGlyHisValPheLysGlyGluGlyPheProSerProThrAspAlaArgHisCysV
 103 : GGCCACCTGGGGCACGTCTTCAAGGGCGAGGGCTTCCCGTCGCCGACGGACGCGCGGCACTGCG :  38

 160 : leAsnSerAlaAlaLeuSerPheThrPro : 168
       !!|||.!!  !:!!||| !!!:!  !|||
       alAsnGlyIleSerLeuArgTyrGlnPro
  37 : TCAACGGCATCTCGCTCCGCTACCAGCCG :   9

vulgar: SPP00000023_1.0 75 168 . scaffold_1:subseq(161152,3428) 284 8 - 158 M 51 153 G 3 0 M 17 51 G 0 6 M 22 66
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome 1.4.0
##date 2009-02-26
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
scaffold_1:subseq(161152,3428)	exonerate:protein2genome	gene	9	284	158	-	.	gene_id 1 ; sequence SPP00000023_1.0 ; gene_orientation .
scaffold_1:subseq(161152,3428)	exonerate:protein2genome	cds	9	284	.	-	.	
scaffold_1:subseq(161152,3428)	exonerate:protein2genome	exon	9	284	.	-	.	insertions 6 ; deletions 3
scaffold_1:subseq(161152,3428)	exonerate:protein2genome	similarity	9	284	158	-	.	alignment_id 1 ; Query SPP00000023_1.0 ; Align 285 76 153 ; Align 132 130 51 ; Align 75 147 66
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis
