Command line: [exonerate -m p2g --showtargetgff -q Gpx.fa -t GPx_scaffold6_extraccio.fa]
Hostname: [localhost]

C4 Alignment:
------------
         Query: SPP00000105_1.0 # Protein # Glutathione peroxidase 8 (GPx8) # Mus musculus # Complete
        Target: scaffold_6:subseq(475515,1952387)
         Model: protein2genome
     Raw score: 157
   Query range: 56 -> 161
  Target range: 1948970 -> 1949276

      57 : GlyArgThrValSerLeuGluLysPheLysGlyLysAlaSerLeuValValAsnVa :      75
           ||| !!.!!|||!!!|||..!!  !:!  !!.!!:!|||  !|||:!! !!|||  
           GlyGlyAlaValThrLeuSerThrTyrAlaAlaArgAlaHisLeuIlePheAsnSe
 1948971 : GGCGGCGCGGTGACGCTGTCGACCTACGCGGCGAGGGCCCATTTGATCTTCAACTC : 1949025

      76 : lAlaSerAspCysArgPheThrAspLysSerTyrGlnThrLeuArgGluLeuHisL :      94
           !|||||| ! ||| !!.!.|||   :!!     !     !!!!!:!! !|||!!. 
           rAlaSerLysCysGlyMetThrProGln---LeuGlyGlyPheGlnAlaLeuGlnA
 1949026 : GGCGTCCAAGTGCGGCATGACGCCGCAG---CTCGGTGGCTTTCAGGCGCTCCAGG : 1949079

      95 : ysGluPheGlyProTyrHisPheAsnValLeuAlaPheProCysAsnGlnPheGly :     112
             :!!||||||  !   !...!!.!.||||||||||||||||||:!!||||||   
           laLysPheGlyAsp---ArgLeuGlnValLeuAlaPheProCysAspGlnPhe---
 1949080 : CCAAGTTCGGCGAC---CGGCTCCAGGTCCTGGCCTTCCCCTGCGACCAGTTC--- : 1949130

     113 : GluSerGluProLysSerSerLysGluValGluSerPheAlaArgGlnAsnTyrGl :     131
           :!!..!||||||   ||| !!  !|||:!!! !:!!|||  !  !.!.!!.!:!||
           LysGlnGluProGlySerProAlaGluIleAlaAlaPheTyrAlaAspLysPheGl
 1949131 : AAGCAGGAGCCGGGCTCGCCCGCGGAGATCGCGGCGTTCTACGCGGACAAGTTCGG : 1949184

     132 : yValThrPheProIlePheHisLysIleLysIleLeuGlyProGluAlaGluProA :     150
           |||||||||||||:!!|||  !|||  ! ! :!!  !||||||!!:|||.!.||| 
           yValThrPheProLeuPheAlaLysGlyAspValAsnGlyProAspAlaHisProL
 1949185 : CGTCACGTTCCCCCTCTTCGCCAAGGGCGACGTCAACGGCCCGGACGCGCACCCGC : 1949241

     151 : laPheArgPheIleValAspSerSerLysLysGlu :     161
            !|||  !|||:!:  !!!::!!!!!||| ! :!!
           euPheAlaPheLeuLysGluAlaThrLysAspGln
 1949242 : TCTTCGCCTTCCTGAAGGAGGCGACCAAGGACCAG : 1949276

vulgar: SPP00000105_1.0 56 161 . scaffold_6:subseq(475515,1952387) 1948970 1949276 + 157 M 28 84 G 1 0 M 13 39 G 1 0 M 12 36 G 1 0 M 49 147
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome 1.4.0
##date 2009-02-27
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	gene	1948971	1949276	157	+	.	gene_id 1 ; sequence SPP00000105_1.0 ; gene_orientation .
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	cds	1948971	1949276	.	+	.	
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	exon	1948971	1949276	.	+	.	insertions 0 ; deletions 3
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	similarity	1948971	1949276	157	+	.	alignment_id 1 ; Query SPP00000105_1.0 ; Align 1948971 57 84 ; Align 1949055 86 39 ; Align 1949094 100 36 ; Align 1949130 113 147
# --- END OF GFF DUMP ---
#

C4 Alignment:
------------
         Query: SPP00000105_1.0 # Protein # Glutathione peroxidase 8 (GPx8) # Mus musculus # Complete
        Target: scaffold_6:subseq(475515,1952387)
         Model: protein2genome
     Raw score: 130
   Query range: 102 -> 162
  Target range: 1395337 -> 1395514

     103 : ValLeuAlaPheProCysAsnGlnPheGlyGluSerGluProLysSerSerLysGl :     121
           ||||||||||||||||||:!!|||||||||!  ..!||||||   |||:!!   !!
           ValLeuAlaPheProCysAspGlnPheGlyGlyGlnGluProGlySerAlaGlyAs
 1395338 : GTCCTCGCCTTCCCCTGCGACCAGTTCGGCGGCCAGGAGCCGGGCTCGGCGGGCGA : 1395392

     122 : uValGluSerPheAlaArgGlnAsnTyrGlyValThrPheProIlePheHisLysI :     140
           ::!!.....!   |||  !.!...!|||||||||  !||||||:!!|||.!.|||!
           pIleArgAsp---AlaTyrAspArgTyrGlyValAspPheProValPheGluLysS
 1395393 : CATCCGCGAC---GCCTACGACCGCTACGGCGTCGATTTTCCCGTCTTCGAGAAGA : 1395446

     141 : leLysIleLeuGlyProGluAlaGluProAlaPheArgPheIleValAspSerSer :     158
            ! ! :!!  !||||||...|||.!.|||  !|||! !!:!:!:  ! ! :!!!!!
           erAspValAsnGlyProArgAlaHisProLeuPheThrTyrLeuLysLysAlaThr
 1395447 : GCGACGTCAACGGGCCGCGCGCGCACCCGCTCTTCACCTACCTGAAGAAAGCCACC : 1395500

     159 : LysLysGluPro :     162
             !  !:!!|||
           AlaGlyGlnPro
 1395501 : GCGGGGCAGCCC : 1395514

vulgar: SPP00000105_1.0 102 162 . scaffold_6:subseq(475515,1952387) 1395337 1395514 + 130 M 22 66 G 1 0 M 37 111
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome 1.4.0
##date 2009-02-27
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	gene	1395338	1395514	130	+	.	gene_id 2 ; sequence SPP00000105_1.0 ; gene_orientation .
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	cds	1395338	1395514	.	+	.	
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	exon	1395338	1395514	.	+	.	insertions 0 ; deletions 1
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	similarity	1395338	1395514	130	+	.	alignment_id 2 ; Query SPP00000105_1.0 ; Align 1395338 103 66 ; Align 1395404 126 111
# --- END OF GFF DUMP ---
#

C4 Alignment:
------------
         Query: SPP00000098_1.0 # Protein # Glutathione peroxidase 1 (GPx1) # Mus musculus # Complete
        Target: scaffold_6:subseq(475515,1952387)
         Model: protein2genome
     Raw score: 292
   Query range: 34 -> 137
  Target range: 757909 -> 758215

     35 : GlyLysValLeuLeuIleGluAsnValAlaSerLeuUnkGlyThrThrIleArgAspT :     54
          |||:!!|||:!!|||:!:|||||||||||||||:!!   |||||||||:!!||||||!
          GlyGlnValValLeuValGluAsnValAlaSerIle***GlyThrThrValArgAspP
 757910 : GGCCAGGTCGTGCTCGTGGAAAACGTCGCGAGTATCTGAGGCACGACGGTCAGGGACT : 757967

     55 : yrThrGluMetAsnAspLeuGlnLysArgLeuGlyProArgGlyLeuValValLeuGl :     73
          :!|||:!!||||||||||||   :!!!:!!!!!.!  !!:!   !!!..!  !|||||
          heThrGlnMetAsnAspLeuThrGluLysPheAlaGlyLys---PheThrCysLeuGl
 757968 : TCACGCAGATGAACGACCTGACCGAGAAATTCGCCGGCAAG---TTCACGTGCCTCGG : 758021

     74 : yPheProCysAsnGlnPheGlyHisGlnGluAsnGlyLysAsnGluGluIleLeuAsn :     92
          |||||||   |||||||||||| ! |||  !|||! !|||:!!  !|||:!:|||  !
          yPheProThrAsnGlnPheGlyLysGlnThrAsnGluLysAspTrpGluLeuLeuPro
 758022 : CTTCCCGACGAACCAGTTCGGGAAGCAGACGAACGAGAAGGACTGGGAGCTGCTGCCC : 758078

     93 : SerLeuLysTyrValArgProGlyGlyGlyPheGluProAsnPheThrLeuPheGluL :    112
          ! !|||  !:!!|||||||||||||||||||||! !||||||||| !!:!!|||   |
          MetLeuAlaHisValArgProGlyGlyGlyPheValProAsnPheProIlePheThrL
 758079 : ATGCTCGCGCACGTGCGCCCCGGCGGCGGCTTCGTGCCCAACTTCCCCATCTTCACCA : 758138

    113 : ysCysGluValAsnGlyGluLysAlaHisProLeuPheThrPheLeuArgAsnAlaLe :    131
          ||  !|||!.!|||||||||   |||     !||||||! !|||||||||::::!!||
          ysThrGluAlaAsnGlyGluGlyAlaSerAspLeuPheLysPheLeuArgSerSerLe
 758139 : AGACCGAGGCCAACGGCGAGGGCGCGTCGGACCTGTTCAAGTTCCTCCGGTCGTCCCT : 758195

    132 : uProThrProSerAspAsp :    137
          |  !.!!||||||||||||
          uGlyAlaProSerAspAsp
 758196 : CGGCGCGCCGAGCGACGAC : 758215

vulgar: SPP00000098_1.0 34 137 . scaffold_6:subseq(475515,1952387) 757909 758215 + 292 M 33 99 G 1 0 M 69 207
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome 1.4.0
##date 2009-02-27
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	gene	757910	758215	292	+	.	gene_id 1 ; sequence SPP00000098_1.0 ; gene_orientation .
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	cds	757910	758215	.	+	.	
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	exon	757910	758215	.	+	.	insertions 0 ; deletions 1
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	similarity	757910	758215	292	+	.	alignment_id 1 ; Query SPP00000098_1.0 ; Align 757910 35 99 ; Align 758009 69 207
# --- END OF GFF DUMP ---
#

C4 Alignment:
------------
         Query: SPP00000098_1.0 # Protein # Glutathione peroxidase 1 (GPx1) # Mus musculus # Complete
        Target: scaffold_6:subseq(475515,1952387)
         Model: protein2genome
     Raw score: 133
   Query range: 145 -> 194
  Target range: 758251 -> 758472

    146 : LysTyrIleIleTrpSerProValCys{A}  >>>> Target Intron 1 >>>>  :    155
          ||| !!|||||||||!!!||||||   {|}            74 bp           
          LysAsnIleIleTrpThrProValThr{A}+-                         +
 758252 : AAGAACATCATCTGGACGCCCGTGACG{C}gc.........................a : 758352

    156 :  {rg}AsnAspIleAlaTrpAsnPheGluLysPheLeuValGlyProAspGlyValPr :    173
           {||}!..|||:!!||||||||||||||||||||||||:!!..!! !!!:|||  !||
          +{rg}ThrAspLeuAlaTrpAsnPheGluLysPheLeuIleAsnGlnGluGlyLysPr
 758353 : g{GC}ACGGACCTCGCCTGGAACTTCGAGAAGTTCCTCATCAACCAGGAGGGCAAGCC : 758407

    174 : oValArgArgTyrSerArgArgPheArgThrIleAspIleGluProAspIleGluThr :    192
          ||||!:!|||||||||! ! !!|||! !|||   |||:!!!   !!|||:!!|||.!!
          oValLysArgTyrSerProGlyPheLeuThrAlaAspValAlaAlaAspValGluAla
 758408 : CGTGAAGCGCTACTCGCCGGGCTTCCTGACCGCGGACGTCGCCGCGGACGTCGAGGCC : 758464

    193 : LeuLeu :    194
          ||||||
          LeuLeu
 758465 : CTCCTC : 758472

vulgar: SPP00000098_1.0 145 194 . scaffold_6:subseq(475515,1952387) 758251 758472 + 133 M 9 27 S 0 1 5 0 2 I 0 70 3 0 2 S 1 2 M 39 117
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome 1.4.0
##date 2009-02-27
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	gene	758252	758472	133	+	.	gene_id 2 ; sequence SPP00000098_1.0 ; gene_orientation +
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	cds	758252	758279	.	+	.	
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	exon	758252	758279	.	+	.	insertions 0 ; deletions 0
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	splice5	758280	758281	.	+	.	intron_id 1 ; splice_site "GC"
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	intron	758280	758353	.	+	.	intron_id 1
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	splice3	758352	758353	.	+	.	intron_id 0 ; splice_site "AG"
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	cds	758354	758472	.	+	.	
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	exon	758354	758472	.	+	.	insertions 0 ; deletions 0
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	similarity	758252	758472	133	+	.	alignment_id 2 ; Query SPP00000098_1.0 ; Align 758252 146 27 ; Align 758356 156 117
# --- END OF GFF DUMP ---
#

C4 Alignment:
------------
         Query: SPP00000065_1.0 # Protein # Glutathione peroxidase 1 (GPx1) # Pan troglodytes # Complete
        Target: scaffold_6:subseq(475515,1952387)
         Model: protein2genome
     Raw score: 296
   Query range: 34 -> 137
  Target range: 757909 -> 758215

     35 : GlyLysValLeuLeuIleGluAsnValAlaSerLeuUnkGlyThrThrValArgAspT :     54
          |||:!!|||:!!|||:!:|||||||||||||||:!!   ||||||||||||||||||!
          GlyGlnValValLeuValGluAsnValAlaSerIle***GlyThrThrValArgAspP
 757910 : GGCCAGGTCGTGCTCGTGGAAAACGTCGCGAGTATCTGAGGCACGACGGTCAGGGACT : 757967

     55 : yrThrGlnMetAsnGluLeuGlnArgArgLeuGlyProArgGlyLeuValValLeuGl :     73
          :!||||||||||||!!:|||   ..!!:!!!!!.!  !!:!   !!!..!  !|||||
          heThrGlnMetAsnAspLeuThrGluLysPheAlaGlyLys---PheThrCysLeuGl
 757968 : TCACGCAGATGAACGACCTGACCGAGAAATTCGCCGGCAAG---TTCACGTGCCTCGG : 758021

     74 : yPheProCysAsnGlnPheGlyHisGlnGluAsnAlaLysAsnGluGluIleLeuAsn :     92
          |||||||   |||||||||||| ! |||  !|||! !|||:!!  !|||:!:|||  !
          yPheProThrAsnGlnPheGlyLysGlnThrAsnGluLysAspTrpGluLeuLeuPro
 758022 : CTTCCCGACGAACCAGTTCGGGAAGCAGACGAACGAGAAGGACTGGGAGCTGCTGCCC : 758078

     93 : SerLeuLysTyrValArgProGlyGlyGlyPheGluProAsnPheMetLeuPheGluL :    112
          ! !|||  !:!!|||||||||||||||||||||! !|||||||||   :!!|||   |
          MetLeuAlaHisValArgProGlyGlyGlyPheValProAsnPheProIlePheThrL
 758079 : ATGCTCGCGCACGTGCGCCCCGGCGGCGGCTTCGTGCCCAACTTCCCCATCTTCACCA : 758138

    113 : ysCysGluValAsnGlyAlaGlyAlaHisProLeuPheAlaPheLeuArgGluAlaLe :    131
          ||  !|||!.!||||||! !||||||     !||||||  !|||||||||..!:!!||
          ysThrGluAlaAsnGlyGluGlyAlaSerAspLeuPheLysPheLeuArgSerSerLe
 758139 : AGACCGAGGCCAACGGCGAGGGCGCGTCGGACCTGTTCAAGTTCCTCCGGTCGTCCCT : 758195

    132 : uProAlaProSerAspAsp :    137
          |  !|||||||||||||||
          uGlyAlaProSerAspAsp
 758196 : CGGCGCGCCGAGCGACGAC : 758215

vulgar: SPP00000065_1.0 34 137 . scaffold_6:subseq(475515,1952387) 757909 758215 + 296 M 33 99 G 1 0 M 69 207
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome 1.4.0
##date 2009-02-27
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	gene	757910	758215	296	+	.	gene_id 1 ; sequence SPP00000065_1.0 ; gene_orientation .
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	cds	757910	758215	.	+	.	
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	exon	757910	758215	.	+	.	insertions 0 ; deletions 1
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	similarity	757910	758215	296	+	.	alignment_id 1 ; Query SPP00000065_1.0 ; Align 757910 35 99 ; Align 758009 69 207
# --- END OF GFF DUMP ---
#

C4 Alignment:
------------
         Query: SPP00000065_1.0 # Protein # Glutathione peroxidase 1 (GPx1) # Pan troglodytes # Complete
        Target: scaffold_6:subseq(475515,1952387)
         Model: protein2genome
     Raw score: 138
   Query range: 155 -> 198
  Target range: 758355 -> 758484

    156 : AsnAspValAlaTrpAsnPheGluLysPheLeuValGlyProAspGlyValProLeuA :    175
          !..|||:!!||||||||||||||||||||||||:!!..!! !!!:|||  !|||:!!!
          ThrAspLeuAlaTrpAsnPheGluLysPheLeuIleAsnGlnGluGlyLysProValL
 758356 : ACGGACCTCGCCTGGAACTTCGAGAAGTTCCTCATCAACCAGGAGGGCAAGCCCGTGA : 758413

    176 : rgArgTyrSerArgArgPheGlnThrIleAspIleGluProAspIleGluAlaLeuLe :    194
          :!|||||||||! ! !!|||! !|||   |||:!!!   !!|||:!!|||||||||||
          ysArgTyrSerProGlyPheLeuThrAlaAspValAlaAlaAspValGluAlaLeuLe
 758414 : AGCGCTACTCGCCGGGCTTCCTGACCGCGGACGTCGCCGCGGACGTCGAGGCCCTCCT : 758470

    195 : uSerGlnGlyPro :    198
          |..!!!.||||||
          uGluHisGlyPro
 758471 : CGAGCACGGCCCC : 758484

vulgar: SPP00000065_1.0 155 198 . scaffold_6:subseq(475515,1952387) 758355 758484 + 138 M 43 129
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome 1.4.0
##date 2009-02-27
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	gene	758356	758484	138	+	.	gene_id 2 ; sequence SPP00000065_1.0 ; gene_orientation .
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	cds	758356	758484	.	+	.	
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	exon	758356	758484	.	+	.	insertions 0 ; deletions 0
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	similarity	758356	758484	138	+	.	alignment_id 2 ; Query SPP00000065_1.0 ; Align 758356 156 129
# --- END OF GFF DUMP ---
#

C4 Alignment:
------------
         Query: SPP00000004_1.0 # Protein # Glutathione peroxidase 1 (GPx1) # Homo sapiens # Complete
        Target: scaffold_6:subseq(475515,1952387)
         Model: protein2genome
     Raw score: 309
   Query range: 1 -> 139
  Target range: 565153 -> 758215

      2 : CysAlaAlaArgLeuAlaAlaAlaAlaAlaAlaAlaGlnSerValTyrAlaPheSerA :     21
          ..!:!!:!!|||   |||||||||:::|||:::|||   :::...   |||   :::|
          AlaSerSerArgAlaAlaAlaAlaSerAlaSerAlaAlaAlaAlaSerAlaAlaAlaA
 565154 : GCCTCGTCGCGCgcggcggcggcctcggcctcggccgccgcggcctcggcggcggcgg : 565211

     22 : laArgProLeuAlaGlyGlyGluProValSerLeuGlySerLeuArg{G}  >>>> T :     37
          ||   |||:!:.........   |||         |||:::      {|}        
          laAlaProValGlyAlaAlaProProSerProAlaGlyAlaAlaAla{G}--      
 565212 : cggcgCCCGTcggcgcggcgccgccgtcgcccgcgggcgccgccgcg{g}cc...... : 565262

     38 : arget Intron 1 >>>>  {ly}LysValLeuLeuIleGluAsnValAlaSerLeu :     48
            192651 bp          {||}:!!|||:!!|||:!:|||||||||||||||:!!
                             ++{ly}GlnValValLeuValGluAsnValAlaSerIle
 565263 : ...................ag{GC}CAGGTCGTGCTCGTGGAAAACGTCGCGAGTATC : 757943

     49 : UnkGlyThrThrValArgAspTyrThrGlnMetAsnGluLeuGlnArgArgLeuGlyP :     68
             ||||||||||||||||||!:!||||||||||||!!:|||   ..!!:!!!!!.! 
          ***GlyThrThrValArgAspPheThrGlnMetAsnAspLeuThrGluLysPheAlaG
 757944 : TGAGGCACGACGGTCAGGGACTTCACGCAGATGAACGACCTGACCGAGAAATTCGCCG : 758003

     69 : roArgGlyLeuValValLeuGlyPheProCysAsnGlnPheGlyHisGlnGluAsnAl :     87
           !!:!   !!!..!  !||||||||||||   |||||||||||| ! |||  !|||! 
          lyLys---PheThrCysLeuGlyPheProThrAsnGlnPheGlyLysGlnThrAsnGl
 758004 : GCAAG---TTCACGTGCCTCGGCTTCCCGACGAACCAGTTCGGGAAGCAGACGAACGA : 758057

     88 : aLysAsnGluGluIleLeuAsnSerLeuLysTyrValArgProGlyGlyGlyPheGlu :    106
          !|||:!!  !|||:!:|||  !! !|||  !:!!|||||||||||||||||||||! !
          uLysAspTrpGluLeuLeuProMetLeuAlaHisValArgProGlyGlyGlyPheVal
 758058 : GAAGGACTGGGAGCTGCTGCCCATGCTCGCGCACGTGCGCCCCGGCGGCGGCTTCGTG : 758114

    107 : ProAsnPheMetLeuPheGluLysCysGluValAsnGlyAlaGlyAlaHisProLeuP :    126
          |||||||||   :!!|||   |||  !|||!.!||||||! !||||||     !||||
          ProAsnPheProIlePheThrLysThrGluAlaAsnGlyGluGlyAlaSerAspLeuP
 758115 : CCCAACTTCCCCATCTTCACCAAGACCGAGGCCAACGGCGAGGGCGCGTCGGACCTGT : 758174

    127 : heAlaPheLeuArgGluAlaLeuProAlaProSerAspAsp :    139
          ||  !|||||||||..!:!!|||  !|||||||||||||||
          heLysPheLeuArgSerSerLeuGlyAlaProSerAspAsp
 758175 : TCAAGTTCCTCCGGTCGTCCCTCGGCGCGCCGAGCGACGAC : 758215

vulgar: SPP00000004_1.0 1 139 . scaffold_6:subseq(475515,1952387) 565153 758215 + 309 M 35 105 S 0 1 5 0 2 I 0 192647 3 0 2 S 1 2 M 32 96 G 1 0 M 69 207
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome 1.4.0
##date 2009-02-27
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	gene	565154	758215	309	+	.	gene_id 1 ; sequence SPP00000004_1.0 ; gene_orientation +
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	cds	565154	565259	.	+	.	
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	exon	565154	565259	.	+	.	insertions 0 ; deletions 0
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	splice5	565260	565261	.	+	.	intron_id 1 ; splice_site "cc"
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	intron	565260	757910	.	+	.	intron_id 1
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	splice3	757909	757910	.	+	.	intron_id 0 ; splice_site "AG"
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	cds	757911	758215	.	+	.	
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	exon	757911	758215	.	+	.	insertions 0 ; deletions 1
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	similarity	565154	758215	309	+	.	alignment_id 1 ; Query SPP00000004_1.0 ; Align 565154 2 105 ; Align 757913 38 96 ; Align 758009 71 207
# --- END OF GFF DUMP ---
#

C4 Alignment:
------------
         Query: SPP00000004_1.0 # Protein # Glutathione peroxidase 1 (GPx1) # Homo sapiens # Complete
        Target: scaffold_6:subseq(475515,1952387)
         Model: protein2genome
     Raw score: 138
   Query range: 157 -> 200
  Target range: 758355 -> 758484

    158 : AsnAspValAlaTrpAsnPheGluLysPheLeuValGlyProAspGlyValProLeuA :    177
          !..|||:!!||||||||||||||||||||||||:!!..!! !!!:|||  !|||:!!!
          ThrAspLeuAlaTrpAsnPheGluLysPheLeuIleAsnGlnGluGlyLysProValL
 758356 : ACGGACCTCGCCTGGAACTTCGAGAAGTTCCTCATCAACCAGGAGGGCAAGCCCGTGA : 758413

    178 : rgArgTyrSerArgArgPheGlnThrIleAspIleGluProAspIleGluAlaLeuLe :    196
          :!|||||||||! ! !!|||! !|||   |||:!!!   !!|||:!!|||||||||||
          ysArgTyrSerProGlyPheLeuThrAlaAspValAlaAlaAspValGluAlaLeuLe
 758414 : AGCGCTACTCGCCGGGCTTCCTGACCGCGGACGTCGCCGCGGACGTCGAGGCCCTCCT : 758470

    197 : uSerGlnGlyPro :    200
          |..!!!.||||||
          uGluHisGlyPro
 758471 : CGAGCACGGCCCC : 758484

vulgar: SPP00000004_1.0 157 200 . scaffold_6:subseq(475515,1952387) 758355 758484 + 138 M 43 129
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome 1.4.0
##date 2009-02-27
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	gene	758356	758484	138	+	.	gene_id 2 ; sequence SPP00000004_1.0 ; gene_orientation .
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	cds	758356	758484	.	+	.	
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	exon	758356	758484	.	+	.	insertions 0 ; deletions 0
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	similarity	758356	758484	138	+	.	alignment_id 2 ; Query SPP00000004_1.0 ; Align 758356 158 129
# --- END OF GFF DUMP ---
#

C4 Alignment:
------------
         Query: SPP00000004_1.0 # Protein # Glutathione peroxidase 1 (GPx1) # Homo sapiens # Complete
        Target: scaffold_6:subseq(475515,1952387)
         Model: protein2genome
     Raw score: 100
   Query range: 6 -> 90
  Target range: 1948910 -> 1949156

       7 : AlaAlaAlaAlaAlaAlaAlaGlnSerValTyrAlaPheSerAlaArgProLeuAl :      25
           ||||||   ||||||||||||   |||  !  !! !|||:!!!.!  !||||||!.
           AlaAlaProAlaAlaAlaAlaAlaSerTyrSerAspPheAlaValAlaProLeuGl
 1948911 : gcggcgccggcggccgcggccgcgAGCTACAGCGACTTCGCCGTGGCGCCCCTCGG : 1948965

      26 : aGlyGlyGluProValSerLeuGlySerLeuArgGlyLysValLeuLeuIleGluA :      44
           !||||||!   !!|||!!!|||..!!!!! !  !!.!!:!!.!! !||||||   |
           yGlyGlyGlyAlaValThrLeuSerThrTyrAlaAlaArgAlaHisLeuIlePheA
 1948966 : CGGCGGCGGCGCGGTGACGCTGTCGACCTACGCGGCGAGGGCCCATTTGATCTTCA : 1949022

      45 : snValAlaSerLeuUnkGlyThrThrValArgAspTyrThrGlnMetAsnGluLeu :      62
           ||  !||||||  !   |||! !|||  !!:!     !  !   .!..!.! !|||
           snSerAlaSerLysCysGlyMetThrProGln---LeuGlyGlyPheGlnAlaLeu
 1949023 : ACTCGGCGTCCAAGTGCGGCATGACGCCGCAG---CTCGGTGGCTTTCAGGCGCTC : 1949073

      63 : GlnArgArgLeuGlyProArgGlyLeuValValLeuGlyPheProCysAsnGlnPh :      81
           |||  !!:!!!!|||  !|||   |||  !||||||!.!|||||||||:!!|||||
           GlnAlaLysPheGlyAspArg---LeuGlnValLeuAlaPheProCysAspGlnPh
 1949074 : CAGGCCAAGTTCGGCGACCGG---CTCCAGGTCCTGGCCTTCCCCTGCGACCAGTT : 1949127

      82 : eGlyHisGlnGluAsnAlaLysAsnGlu :      90
           |  !!!.:!!  !..!:!!      |||
           eLysGlnGluProGlySerProAlaGlu
 1949128 : CAAGCAGGAGCCGGGCTCGCCCGCGGAG : 1949156

vulgar: SPP00000004_1.0 6 90 . scaffold_6:subseq(475515,1952387) 1948910 1949156 + 100 M 48 144 G 1 0 M 14 42 G 1 0 M 20 60
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome 1.4.0
##date 2009-02-27
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	gene	1948911	1949156	100	+	.	gene_id 3 ; sequence SPP00000004_1.0 ; gene_orientation .
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	cds	1948911	1949156	.	+	.	
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	exon	1948911	1949156	.	+	.	insertions 0 ; deletions 2
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	similarity	1948911	1949156	100	+	.	alignment_id 3 ; Query SPP00000004_1.0 ; Align 1948911 7 144 ; Align 1949055 56 42 ; Align 1949097 71 60
# --- END OF GFF DUMP ---
#

C4 Alignment:
------------
         Query: SPP00000103_1.0 # Protein # Glutathione peroxidase 6 (GPx6) # Mus musculus # Complete
        Target: scaffold_6:subseq(475515,1952387)
         Model: protein2genome
     Raw score: 191
   Query range: 60 -> 180
  Target range: 757909 -> 837323

     61 : GlyLysHisIleLeuPheValAsnValAlaSerPheCysGlyLeuThrAla<->ThrT :     79
          |||:!!  !:!:||| ! ! !||||||||||||.!!!! |||  !|||!.!     !!
          GlyGlnValValLeuValGluAsnValAlaSerIle***GlyThrThrValArgAspP
 757910 : GGCCAGGTCGTGCTCGTGGAAAACGTCGCGAGTATCTGAGGCACGACGGTCAGGGACT : 757967

     80 : yrProGluLeuAsnThrLeuGlnGluGluLeuLysProPheAsnValThrValLeuGl :     98
          :! !!:!!:!!|||  !|||   |||:!!!!!     !   !!. !!|||  !|||||
          heThrGlnMetAsnAspLeuThrGluLysPheAlaGly---LysPheThrCysLeuGl
 757968 : TCACGCAGATGAACGACCTGACCGAGAAATTCGCCGGC---AAGTTCACGTGCCTCGG : 758021

     99 : yPheProCysAsnGlnPheGlyLysGlnGluProGlyLysAsnSerGluIleLeuLeu :    117
          |||||||   ||||||||||||||||||  !  !! !|||:!!!!!|||:!:|||! !
          yPheProThrAsnGlnPheGlyLysGlnThrAsnGluLysAspTrpGluLeuLeuPro
 758022 : CTTCCCGACGAACCAGTTCGGGAAGCAGACGAACGAGAAGGACTGGGAGCTGCTGCCC : 758078

    118 : GlyLeuLysTyrValArgProGlyGlyGlyTyrValProAsnPheGlnLeuPheGluL :    137
            !|||  !:!!||||||||||||||||||!:!||||||||||||!  :!!|||   |
          MetLeuAlaHisValArgProGlyGlyGlyPheValProAsnPheProIlePheThrL
 758079 : ATGCTCGCGCACGTGCGCCCCGGCGGCGGCTTCGTGCCCAACTTCCCCATCTTCACCA : 758138

    138 : ysGlyAspValAsnGlyAspAsnGluGlnLysValPheSerPheLeuLysAsnSerCy :    156
          ||  !!!:!.!||||||!!:..!! !..! ! :!!|||!.!||||||::!:::|||  
          ysThrGluAlaAsnGlyGluGlyAlaSerAspLeuPheLysPheLeuArgSerSerLe
 758139 : AGACCGAGGCCAACGGCGAGGGCGCGTCGGACCTGTTCAAGTTCCTCCGGTCGTCCCT : 758195

    157 : sProProThrSerGluLeuPhe{Gl}  >>>> Target Intron 1 >>>>  {y} :    164
          !  ! !! !!|||!!:  !|||{  }           79054 bp          {!}
          uGlyAlaProSerAspAspPhe{Ly}+-                         +-{s}
 758196 : CGGCGCGCCGAGCGACGACTTC{AA}gg.........................ac{G} : 837275

    165 : SerProGluHisLeuPheTrpAspProMetLysValHisAspIleArg :    180
          ||||||!!:|||||||||!::! ! !!  ! ! :!! !!|||   |||
          SerProAspHisLeuPhePheGlyAlaAlaAspLeuAspAspAlaArg
 837276 : TCCCCCGACCACCTCTTCTTCGGCGCGGCGGACCTCGACGACGCGCGC : 837323

vulgar: SPP00000103_1.0 60 180 . scaffold_6:subseq(475515,1952387) 757909 837323 + 191 M 17 51 G 0 3 M 14 42 G 1 0 M 71 213 S 0 2 5 0 2 I 0 79050 3 0 2 S 1 1 M 16 48
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome 1.4.0
##date 2009-02-27
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	gene	757910	837323	191	+	.	gene_id 1 ; sequence SPP00000103_1.0 ; gene_orientation +
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	cds	757910	758220	.	+	.	
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	exon	757910	758220	.	+	.	insertions 3 ; deletions 1
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	splice5	758221	758222	.	+	.	intron_id 1 ; splice_site "GG"
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	intron	758221	837274	.	+	.	intron_id 1
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	splice3	837273	837274	.	+	.	intron_id 0 ; splice_site "AC"
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	cds	837275	837323	.	+	.	
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	exon	837275	837323	.	+	.	insertions 0 ; deletions 0
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	similarity	757910	837323	191	+	.	alignment_id 1 ; Query SPP00000103_1.0 ; Align 757910 61 51 ; Align 757964 78 42 ; Align 758006 93 213 ; Align 837276 165 48
# --- END OF GFF DUMP ---
#

C4 Alignment:
------------
         Query: SPP00000100_1.0 # Protein # Glutathione peroxidase 3 (GPx3) # Mus musculus # Complete
        Target: scaffold_6:subseq(475515,1952387)
         Model: protein2genome
     Raw score: 179
   Query range: 93 -> 152
  Target range: 758017 -> 758194

     94 : LeuGlyPheProSerAsnGlnPheGlyLysGlnGluProGlyGluAsnSerGluIleL :    113
          ||||||||||||!!!||||||||||||||||||  !  !! !:!!:!!!!!|||:!:|
          LeuGlyPheProThrAsnGlnPheGlyLysGlnThrAsnGluLysAspTrpGluLeuL
 758018 : CTCGGCTTCCCGACGAACCAGTTCGGGAAGCAGACGAACGAGAAGGACTGGGAGCTGC : 758075

    114 : euProSerLeuLysTyrValArgProGlyGlyGlyPheValProAsnPheGlnLeuPh :    132
          |||||! !|||  !:!!|||||||||||||||||||||||||||||||||!  :!!||
          euProMetLeuAlaHisValArgProGlyGlyGlyPheValProAsnPheProIlePh
 758076 : TGCCCATGCTCGCGCACGTGCGCCCCGGCGGCGGCTTCGTGCCCAACTTCCCCATCTT : 758132

    133 : eGluLysGlyAspValAsnGlyGluLysGluGlnLysPheTyrThrPheLeuLysAsn :    151
          |   |||  !!!:!.!|||||||||   ! !..! ! .!.!:!! !||||||::!:::
          eThrLysThrGluAlaAsnGlyGluGlyAlaSerAspLeuPheLysPheLeuArgSer
 758133 : CACCAAGACCGAGGCCAACGGCGAGGGCGCGTCGGACCTGTTCAAGTTCCTCCGGTCG : 758189

    152 : Ser :    152
          |||
          Ser
 758190 : TCC : 758194

vulgar: SPP00000100_1.0 93 152 . scaffold_6:subseq(475515,1952387) 758017 758194 + 179 M 59 177
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome 1.4.0
##date 2009-02-27
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	gene	758018	758194	179	+	.	gene_id 1 ; sequence SPP00000100_1.0 ; gene_orientation .
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	cds	758018	758194	.	+	.	
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	exon	758018	758194	.	+	.	insertions 0 ; deletions 0
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	similarity	758018	758194	179	+	.	alignment_id 1 ; Query SPP00000100_1.0 ; Align 758018 94 177
# --- END OF GFF DUMP ---
#

C4 Alignment:
------------
         Query: SPP00000099_1.0 # Protein # Glutathione peroxidase 2 (GPx2) # Mus musculus # Complete
        Target: scaffold_6:subseq(475515,1952387)
         Model: protein2genome
     Raw score: 246
   Query range: 27 -> 129
  Target range: 757909 -> 758215

     28 : GlyArgAlaValLeuIleGluAsnValAlaSerLeuUnkGlyThrThrThrArgAspT :     47
          |||!:!!.!||||||:!:|||||||||||||||:!!   |||||||||..!||||||!
          GlyGlnValValLeuValGluAsnValAlaSerIle***GlyThrThrValArgAspP
 757910 : GGCCAGGTCGTGCTCGTGGAAAACGTCGCGAGTATCTGAGGCACGACGGTCAGGGACT : 757967

     48 : yrAsnGlnLeuAsnGluLeuGlnCysArgPheProArgArgLeuValValLeuGlyPh :     66
          :!!..|||:!!|||!!:|||      !:!||| !! !!!:!!!!..!  !||||||||
          heThrGlnMetAsnAspLeuThrGluLysPheAlaGlyLysPheThrCysLeuGlyPh
 757968 : TCACGCAGATGAACGACCTGACCGAGAAATTCGCCGGCAAGTTCACGTGCCTCGGCTT : 758024

     67 : eProCysAsnGlnPheGlyHisGlnGluAsnCysGlnAsnGluGluIleLeuAsnSer :     85
          ||||   |||||||||||| ! |||  !|||   :!!:!!  !|||:!:|||  !! !
          eProThrAsnGlnPheGlyLysGlnThrAsnGluLysAspTrpGluLeuLeuProMet
 758025 : CCCGACGAACCAGTTCGGGAAGCAGACGAACGAGAAGGACTGGGAGCTGCTGCCCATG : 758081

     86 : LeuLysTyrValArgProGlyGlyGlyTyrGlnProThrPheSerLeuThrGlnLysC :    105
          |||  !:!!||||||||||||||||||!:!  !|||!.!||| !!:!!  !   ||| 
          LeuAlaHisValArgProGlyGlyGlyPheValProAsnPheProIlePheThrLysT
 758082 : CTCGCGCACGTGCGCCCCGGCGGCGGCTTCGTGCCCAACTTCCCCATCTTCACCAAGA : 758141

    106 : ysAspValAsnGlyGlnAsnGluHisProValPheAlaTyrLeuLysAspLysLeuPr :    124
           !!!:!.!||||||:!!..!! !     !:!!|||  !!:!|||::!......|||  
          hrGluAlaAsnGlyGluGlyAlaSerAspLeuPheLysPheLeuArgSerSerLeuGl
 758142 : CCGAGGCCAACGGCGAGGGCGCGTCGGACCTGTTCAAGTTCCTCCGGTCGTCCCTCGG : 758198

    125 : oTyrProTyrAspAsp :    129
          !   |||  !||||||
          yAlaProSerAspAsp
 758199 : CGCGCCGAGCGACGAC : 758215

vulgar: SPP00000099_1.0 27 129 . scaffold_6:subseq(475515,1952387) 757909 758215 + 246 M 102 306
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome 1.4.0
##date 2009-02-27
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	gene	757910	758215	246	+	.	gene_id 1 ; sequence SPP00000099_1.0 ; gene_orientation .
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	cds	757910	758215	.	+	.	
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	exon	757910	758215	.	+	.	insertions 0 ; deletions 0
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	similarity	757910	758215	246	+	.	alignment_id 1 ; Query SPP00000099_1.0 ; Align 757910 28 306
# --- END OF GFF DUMP ---
#

C4 Alignment:
------------
         Query: SPP00000099_1.0 # Protein # Glutathione peroxidase 2 (GPx2) # Mus musculus # Complete
        Target: scaffold_6:subseq(475515,1952387)
         Model: protein2genome
     Raw score: 124
   Query range: 137 -> 187
  Target range: 758251 -> 758475

    138 : LysLeuIleIleTrpSerProValArg{A}  >>>> Target Intron 1 >>>>  :    147
          |||  !|||||||||!!!||||||! !{|}            74 bp           
          LysAsnIleIleTrpThrProValThr{A}+-                         +
 758252 : AAGAACATCATCTGGACGCCCGTGACG{C}gc.........................a : 758352

    148 :  {rg}SerAspValSerTrpAsnPheGluLysPheLeuIleGlyProGluGlyGluPr :    165
           {||}!!!|||:!!:!!||||||||||||||||||||||||..!! !||||||:!!||
          +{rg}ThrAspLeuAlaTrpAsnPheGluLysPheLeuIleAsnGlnGluGlyLysPr
 758353 : g{GC}ACGGACCTCGCCTGGAACTTCGAGAAGTTCCTCATCAACCAGGAGGGCAAGCC : 758407

    166 : oPheArgArgTyrSerArgSerPheGlnThrIleAsnIleGluProAspIleLysArg :    184
          | ! !:!|||||||||! !.!!|||! !|||   :!!:!!!   !!|||:!!:!!  !
          oValLysArgTyrSerProGlyPheLeuThrAlaAspValAlaAlaAspValGluAla
 758408 : CGTGAAGCGCTACTCGCCGGGCTTCCTGACCGCGGACGTCGCCGCGGACGTCGAGGCC : 758464

    185 : LeuLeuLys :    187
          ||||||:!!
          LeuLeuGlu
 758465 : CTCCTCGAG : 758475

vulgar: SPP00000099_1.0 137 187 . scaffold_6:subseq(475515,1952387) 758251 758475 + 124 M 9 27 S 0 1 5 0 2 I 0 70 3 0 2 S 1 2 M 40 120
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome 1.4.0
##date 2009-02-27
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	gene	758252	758475	124	+	.	gene_id 2 ; sequence SPP00000099_1.0 ; gene_orientation +
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	cds	758252	758279	.	+	.	
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	exon	758252	758279	.	+	.	insertions 0 ; deletions 0
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	splice5	758280	758281	.	+	.	intron_id 1 ; splice_site "GC"
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	intron	758280	758353	.	+	.	intron_id 1
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	splice3	758352	758353	.	+	.	intron_id 0 ; splice_site "AG"
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	cds	758354	758475	.	+	.	
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	exon	758354	758475	.	+	.	insertions 0 ; deletions 0
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	similarity	758252	758475	124	+	.	alignment_id 2 ; Query SPP00000099_1.0 ; Align 758252 138 27 ; Align 758356 148 120
# --- END OF GFF DUMP ---
#

C4 Alignment:
------------
         Query: SPP00000069_1.0 # Protein # Glutathione peroxidase 5 (GPx5) # Pan troglodytes # Complete
        Target: scaffold_6:subseq(475515,1952387)
         Model: protein2genome
     Raw score: 193
   Query range: 56 -> 160
  Target range: 757897 -> 758212

     57 : LysGlnTyrValGlyLysHisIleLeuPheValAsnValAlaThrTyrCysGlyLeuT :     76
          :::!:!! !:!!|||:!!  !:!:||| ! ! !|||||||||!:!  !!! |||  !|
          ArgArgSerLeuGlyGlnValValLeuValGluAsnValAlaSerIle***GlyThrT
 757898 : CGCCGATCTTTAGGCCAGGTCGTGCTCGTGGAAAACGTCGCGAGTATCTGAGGCACGA : 757955

     77 : hrAlaGln<->TyrProGluLeuAsnAlaProGluGluLeuLysProTyrGlyLeuVa :     94
          ||!.!::!   !:! !!:!!:!!|||! !! !   |||  !    !!  !  !!!!..
          hrValArgAspPheThrGlnMetAsnAspLeuThrGluLysPheAlaGlyLysPheTh
 757956 : CGGTCAGGGACTTCACGCAGATGAACGACCTGACCGAGAAATTCGCCGGCAAGTTCAC : 758012

     95 : lValLeuGlyPheProCysAsnGlnPheGlyLysGlnGluProGlyAspAsnLysGlu :    113
          !  !||||||||||||   ||||||||||||||||||  !  !! ! ! :!!  !|||
          rCysLeuGlyPheProThrAsnGlnPheGlyLysGlnThrAsnGluLysAspTrpGlu
 758013 : GTGCCTCGGCTTCCCGACGAACCAGTTCGGGAAGCAGACGAACGAGAAGGACTGGGAG : 758069

    114 : IleLeuProAlaLeuLysTyrValArgProGlyGlyGlyPheValProSerPheGlnL :    133
          :!:||||||  !|||  !:!!|||||||||||||||||||||||||||!:!|||!  :
          LeuLeuProMetLeuAlaHisValArgProGlyGlyGlyPheValProAsnPheProI
 758070 : CTGCTGCCCATGCTCGCGCACGTGCGCCCCGGCGGCGGCTTCGTGCCCAACTTCCCCA : 758129

    134 : euPheGluLysGlyAspValAsnGlyGluLysGluGlnLysValPheSerPheLeuLy :    152
          !!|||   |||  !!!:!.!|||||||||   ! !..! ! :!!|||!.!||||||::
          lePheThrLysThrGluAlaAsnGlyGluGlyAlaSerAspLeuPheLysPheLeuAr
 758130 : TCTTCACCAAGACCGAGGCCAACGGCGAGGGCGCGTCGGACCTGTTCAAGTTCCTCCG : 758186

    153 : sHisSerCysProHisProSerGlu :    160
          !   |||  !  !   ||||||!!:
          gSerSerLeuGlyAlaProSerAsp
 758187 : GTCGTCCCTCGGCGCGCCGAGCGAC : 758212

vulgar: SPP00000069_1.0 56 160 . scaffold_6:subseq(475515,1952387) 757897 758212 + 193 M 22 66 G 0 3 M 82 246
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome 1.4.0
##date 2009-02-27
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	gene	757898	758212	193	+	.	gene_id 1 ; sequence SPP00000069_1.0 ; gene_orientation .
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	cds	757898	758212	.	+	.	
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	exon	757898	758212	.	+	.	insertions 3 ; deletions 0
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	similarity	757898	758212	193	+	.	alignment_id 1 ; Query SPP00000069_1.0 ; Align 757898 57 66 ; Align 757967 79 246
# --- END OF GFF DUMP ---
#

C4 Alignment:
------------
         Query: SPP00000067_1.0 # Protein # Glutathione peroxidase 3 (GPx3) # Pan troglodytes # Complete
        Target: scaffold_6:subseq(475515,1952387)
         Model: protein2genome
     Raw score: 192
   Query range: 56 -> 161
  Target range: 757897 -> 758212

     57 : LysGlnTyrAlaGlyLysTyrValLeuPheValAsnValAlaSerTyrUnkGlyLeuT :     76
          :::!:!! !  !|||:!!  !|||||| ! ! !||||||||||||  !   |||  !|
          ArgArgSerLeuGlyGlnValValLeuValGluAsnValAlaSerIle***GlyThrT
 757898 : CGCCGATCTTTAGGCCAGGTCGTGCTCGTGGAAAACGTCGCGAGTATCTGAGGCACGA : 757955

     77 : hr<->GlyGlnTyrIleGluLeuAsnAlaLeuGlnGluGluLeuAlaProPheGlyLe :     94
          ||    !!.!.!:!!  :!!:!!|||! !|||   |||:!!!!!|||  !     !!!
          hrValArgAspPheThrGlnMetAsnAspLeuThrGluLysPheAlaGly---LysPh
 757956 : CGGTCAGGGACTTCACGCAGATGAACGACCTGACCGAGAAATTCGCCGGC---AAGTT : 758009

     95 : uValIleLeuGlyPheProCysAsnGlnPheGlyLysGlnGluProGlyGluAsnSer :    113
          !..!  !||||||||||||   ||||||||||||||||||  !  !! !:!!:!!!!!
          eThrCysLeuGlyPheProThrAsnGlnPheGlyLysGlnThrAsnGluLysAspTrp
 758010 : CACGTGCCTCGGCTTCCCGACGAACCAGTTCGGGAAGCAGACGAACGAGAAGGACTGG : 758066

    114 : GluIleLeuProThrLeuLysTyrValArgProGlyGlyGlyPheValProAsnPheG :    133
          |||:!:||||||! !|||  !:!!|||||||||||||||||||||||||||||||||!
          GluLeuLeuProMetLeuAlaHisValArgProGlyGlyGlyPheValProAsnPheP
 758067 : GAGCTGCTGCCCATGCTCGCGCACGTGCGCCCCGGCGGCGGCTTCGTGCCCAACTTCC : 758126

    134 : lnLeuPheGluLysGlyAspValAsnGlyGluLysGluGlnLysPheTyrThrPheLe :    152
            :!!|||   |||  !!!:!.!|||||||||   ! !..! ! .!.!:!! !|||||
          roIlePheThrLysThrGluAlaAsnGlyGluGlyAlaSerAspLeuPheLysPheLe
 758127 : CCATCTTCACCAAGACCGAGGCCAACGGCGAGGGCGCGTCGGACCTGTTCAAGTTCCT : 758183

    153 : uLysAsnSerCysProProThrSerGlu :    161
          |::!:::|||  !  ! !! !!|||!!:
          uArgSerSerLeuGlyAlaProSerAsp
 758184 : CCGGTCGTCCCTCGGCGCGCCGAGCGAC : 758212

vulgar: SPP00000067_1.0 56 161 . scaffold_6:subseq(475515,1952387) 757897 758212 + 192 M 20 60 G 0 3 M 15 45 G 1 0 M 69 207
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome 1.4.0
##date 2009-02-27
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	gene	757898	758212	192	+	.	gene_id 1 ; sequence SPP00000067_1.0 ; gene_orientation .
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	cds	757898	758212	.	+	.	
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	exon	757898	758212	.	+	.	insertions 3 ; deletions 1
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	similarity	757898	758212	192	+	.	alignment_id 1 ; Query SPP00000067_1.0 ; Align 757898 57 60 ; Align 757961 77 45 ; Align 758006 93 207
# --- END OF GFF DUMP ---
#

C4 Alignment:
------------
         Query: SPP00000066_1.0 # Protein # Glutathione peroxidase 2 (GPx2) # Pan troglodytes # Complete
        Target: scaffold_6:subseq(475515,1952387)
         Model: protein2genome
     Raw score: 255
   Query range: 27 -> 129
  Target range: 757909 -> 758215

     28 : GlyArgAlaValLeuIleGluAsnValAlaSerLeuUnkGlyThrThrThrArgAspP :     47
          |||!:!!.!||||||:!:|||||||||||||||:!!   |||||||||..!|||||||
          GlyGlnValValLeuValGluAsnValAlaSerIle***GlyThrThrValArgAspP
 757910 : GGCCAGGTCGTGCTCGTGGAAAACGTCGCGAGTATCTGAGGCACGACGGTCAGGGACT : 757967

     48 : heThrGlnLeuAsnGluLeuGlnCysArgPheProArgArgLeuValValLeuGlyPh :     66
          ||||||||:!!|||!!:|||      !:!||| !! !!!:!!!!..!  !||||||||
          heThrGlnMetAsnAspLeuThrGluLysPheAlaGlyLysPheThrCysLeuGlyPh
 757968 : TCACGCAGATGAACGACCTGACCGAGAAATTCGCCGGCAAGTTCACGTGCCTCGGCTT : 758024

     67 : eProCysAsnGlnPheGlyHisGlnGluAsnCysGlnAsnGluGluIleLeuAsnSer :     85
          ||||   |||||||||||| ! |||  !|||   :!!:!!  !|||:!:|||  !! !
          eProThrAsnGlnPheGlyLysGlnThrAsnGluLysAspTrpGluLeuLeuProMet
 758025 : CCCGACGAACCAGTTCGGGAAGCAGACGAACGAGAAGGACTGGGAGCTGCTGCCCATG : 758081

     86 : LeuLysTyrValArgProGlyGlyGlyTyrGlnProThrPheThrLeuValGlnLysC :    105
          |||  !:!!||||||||||||||||||!:!  !|||!.!||| !!:!! !!   ||| 
          LeuAlaHisValArgProGlyGlyGlyPheValProAsnPheProIlePheThrLysT
 758082 : CTCGCGCACGTGCGCCCCGGCGGCGGCTTCGTGCCCAACTTCCCCATCTTCACCAAGA : 758141

    106 : ysGluValAsnGlyGlnAsnGluHisProLysPheAlaTyrLeuLysAspLysLeuPr :    124
           !|||!.!||||||:!!..!! !     !  !|||  !!:!|||::!......|||  
          hrGluAlaAsnGlyGluGlyAlaSerAspLeuPheLysPheLeuArgSerSerLeuGl
 758142 : CCGAGGCCAACGGCGAGGGCGCGTCGGACCTGTTCAAGTTCCTCCGGTCGTCCCTCGG : 758198

    125 : oTyrProTyrAspAsp :    129
          !   |||  !||||||
          yAlaProSerAspAsp
 758199 : CGCGCCGAGCGACGAC : 758215

vulgar: SPP00000066_1.0 27 129 . scaffold_6:subseq(475515,1952387) 757909 758215 + 255 M 102 306
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome 1.4.0
##date 2009-02-27
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	gene	757910	758215	255	+	.	gene_id 1 ; sequence SPP00000066_1.0 ; gene_orientation .
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	cds	757910	758215	.	+	.	
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	exon	757910	758215	.	+	.	insertions 0 ; deletions 0
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	similarity	757910	758215	255	+	.	alignment_id 1 ; Query SPP00000066_1.0 ; Align 757910 28 306
# --- END OF GFF DUMP ---
#

C4 Alignment:
------------
         Query: SPP00000066_1.0 # Protein # Glutathione peroxidase 2 (GPx2) # Pan troglodytes # Complete
        Target: scaffold_6:subseq(475515,1952387)
         Model: protein2genome
     Raw score: 124
   Query range: 137 -> 187
  Target range: 758251 -> 758475

    138 : LysLeuIleIleTrpSerProValArg{A}  >>>> Target Intron 1 >>>>  :    147
          |||  !|||||||||!!!||||||! !{|}            74 bp           
          LysAsnIleIleTrpThrProValThr{A}+-                         +
 758252 : AAGAACATCATCTGGACGCCCGTGACG{C}gc.........................a : 758352

    148 :  {rg}SerAspValAlaTrpAsnPheGluLysPheLeuIleGlyProGluGlyGluPr :    165
           {||}!!!|||:!!|||||||||||||||||||||||||||..!! !||||||:!!||
          +{rg}ThrAspLeuAlaTrpAsnPheGluLysPheLeuIleAsnGlnGluGlyLysPr
 758353 : g{GC}ACGGACCTCGCCTGGAACTTCGAGAAGTTCCTCATCAACCAGGAGGGCAAGCC : 758407

    166 : oPheArgArgTyrSerArgThrPheProThrIleAsnIleGluProAspIleLysArg :    184
          | ! !:!|||||||||! !  !|||! !|||   :!!:!!!   !!|||:!!:!!  !
          oValLysArgTyrSerProGlyPheLeuThrAlaAspValAlaAlaAspValGluAla
 758408 : CGTGAAGCGCTACTCGCCGGGCTTCCTGACCGCGGACGTCGCCGCGGACGTCGAGGCC : 758464

    185 : LeuLeuLys :    187
          ||||||:!!
          LeuLeuGlu
 758465 : CTCCTCGAG : 758475

vulgar: SPP00000066_1.0 137 187 . scaffold_6:subseq(475515,1952387) 758251 758475 + 124 M 9 27 S 0 1 5 0 2 I 0 70 3 0 2 S 1 2 M 40 120
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome 1.4.0
##date 2009-02-27
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	gene	758252	758475	124	+	.	gene_id 2 ; sequence SPP00000066_1.0 ; gene_orientation +
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	cds	758252	758279	.	+	.	
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	exon	758252	758279	.	+	.	insertions 0 ; deletions 0
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	splice5	758280	758281	.	+	.	intron_id 1 ; splice_site "GC"
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	intron	758280	758353	.	+	.	intron_id 1
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	splice3	758352	758353	.	+	.	intron_id 0 ; splice_site "AG"
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	cds	758354	758475	.	+	.	
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	exon	758354	758475	.	+	.	insertions 0 ; deletions 0
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	similarity	758252	758475	124	+	.	alignment_id 2 ; Query SPP00000066_1.0 ; Align 758252 138 27 ; Align 758356 148 120
# --- END OF GFF DUMP ---
#

C4 Alignment:
------------
         Query: SPP00000008_1.0 # Protein # Glutathione peroxidase 5 (GPx5) # Homo sapiens # Complete
        Target: scaffold_6:subseq(475515,1952387)
         Model: protein2genome
     Raw score: 187
   Query range: 56 -> 161
  Target range: 757897 -> 758212

     57 : LysGlnTyrValGlyLysHisIleLeuPheValAsnValAlaThrTyrCysGlyLeuT :     76
          :::!:!! !:!!|||:!!  !:!:||| ! ! !|||||||||!:!  !!! |||  !|
          ArgArgSerLeuGlyGlnValValLeuValGluAsnValAlaSerIle***GlyThrT
 757898 : CGCCGATCTTTAGGCCAGGTCGTGCTCGTGGAAAACGTCGCGAGTATCTGAGGCACGA : 757955

     77 : hrAlaGln<->TyrProGluLeuAsnAlaLeuGlnGluGluLeuLysProTyrGlyLe :     94
          ||!.!::!   !:! !!:!!:!!|||! !|||   |||:!!!!!     !     !!!
          hrValArgAspPheThrGlnMetAsnAspLeuThrGluLysPheAlaGly---LysPh
 757956 : CGGTCAGGGACTTCACGCAGATGAACGACCTGACCGAGAAATTCGCCGGC---AAGTT : 758009

     95 : uValValLeuGlyPheProCysAsnGlnPheGlyLysGlnGluProGlyAspAsnLys :    113
          !..!  !||||||||||||   ||||||||||||||||||  !  !! ! ! :!!  !
          eThrCysLeuGlyPheProThrAsnGlnPheGlyLysGlnThrAsnGluLysAspTrp
 758010 : CACGTGCCTCGGCTTCCCGACGAACCAGTTCGGGAAGCAGACGAACGAGAAGGACTGG : 758066

    114 : GluIleLeuProGlyLeuLysTyrValArgProGlyGlyGlyPheValProSerPheG :    133
          |||:!:||||||  !|||  !:!!|||||||||||||||||||||||||||!:!|||!
          GluLeuLeuProMetLeuAlaHisValArgProGlyGlyGlyPheValProAsnPheP
 758067 : GAGCTGCTGCCCATGCTCGCGCACGTGCGCCCCGGCGGCGGCTTCGTGCCCAACTTCC : 758126

    134 : lnLeuPheGluLysGlyAspValAsnGlyGluLysGluGlnLysValPheSerPheLe :    152
            :!!|||   |||  !!!:!.!|||||||||   ! !..! ! :!!|||!.!|||||
          roIlePheThrLysThrGluAlaAsnGlyGluGlyAlaSerAspLeuPheLysPheLe
 758127 : CCATCTTCACCAAGACCGAGGCCAACGGCGAGGGCGCGTCGGACCTGTTCAAGTTCCT : 758183

    153 : uLysHisSerCysProHisProSerGlu :    161
          |::!   |||  !  !   ||||||!!:
          uArgSerSerLeuGlyAlaProSerAsp
 758184 : CCGGTCGTCCCTCGGCGCGCCGAGCGAC : 758212

vulgar: SPP00000008_1.0 56 161 . scaffold_6:subseq(475515,1952387) 757897 758212 + 187 M 22 66 G 0 3 M 13 39 G 1 0 M 69 207
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome 1.4.0
##date 2009-02-27
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	gene	757898	758212	187	+	.	gene_id 1 ; sequence SPP00000008_1.0 ; gene_orientation .
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	cds	757898	758212	.	+	.	
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	exon	757898	758212	.	+	.	insertions 3 ; deletions 1
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	similarity	757898	758212	187	+	.	alignment_id 1 ; Query SPP00000008_1.0 ; Align 757898 57 66 ; Align 757967 79 39 ; Align 758006 93 207
# --- END OF GFF DUMP ---
#

C4 Alignment:
------------
         Query: SPP00000006_1.0 # Protein # Glutathione peroxidase 3 (GPx3) # Homo sapiens # Complete
        Target: scaffold_6:subseq(475515,1952387)
         Model: protein2genome
     Raw score: 192
   Query range: 56 -> 161
  Target range: 757897 -> 758212

     57 : LysGlnTyrAlaGlyLysTyrValLeuPheValAsnValAlaSerTyrUnkGlyLeuT :     76
          :::!:!! !  !|||:!!  !|||||| ! ! !||||||||||||  !   |||  !|
          ArgArgSerLeuGlyGlnValValLeuValGluAsnValAlaSerIle***GlyThrT
 757898 : CGCCGATCTTTAGGCCAGGTCGTGCTCGTGGAAAACGTCGCGAGTATCTGAGGCACGA : 757955

     77 : hr<->GlyGlnTyrIleGluLeuAsnAlaLeuGlnGluGluLeuAlaProPheGlyLe :     94
          ||    !!.!.!:!!  :!!:!!|||! !|||   |||:!!!!!|||  !     !!!
          hrValArgAspPheThrGlnMetAsnAspLeuThrGluLysPheAlaGly---LysPh
 757956 : CGGTCAGGGACTTCACGCAGATGAACGACCTGACCGAGAAATTCGCCGGC---AAGTT : 758009

     95 : uValIleLeuGlyPheProCysAsnGlnPheGlyLysGlnGluProGlyGluAsnSer :    113
          !..!  !||||||||||||   ||||||||||||||||||  !  !! !:!!:!!!!!
          eThrCysLeuGlyPheProThrAsnGlnPheGlyLysGlnThrAsnGluLysAspTrp
 758010 : CACGTGCCTCGGCTTCCCGACGAACCAGTTCGGGAAGCAGACGAACGAGAAGGACTGG : 758066

    114 : GluIleLeuProThrLeuLysTyrValArgProGlyGlyGlyPheValProAsnPheG :    133
          |||:!:||||||! !|||  !:!!|||||||||||||||||||||||||||||||||!
          GluLeuLeuProMetLeuAlaHisValArgProGlyGlyGlyPheValProAsnPheP
 758067 : GAGCTGCTGCCCATGCTCGCGCACGTGCGCCCCGGCGGCGGCTTCGTGCCCAACTTCC : 758126

    134 : lnLeuPheGluLysGlyAspValAsnGlyGluLysGluGlnLysPheTyrThrPheLe :    152
            :!!|||   |||  !!!:!.!|||||||||   ! !..! ! .!.!:!! !|||||
          roIlePheThrLysThrGluAlaAsnGlyGluGlyAlaSerAspLeuPheLysPheLe
 758127 : CCATCTTCACCAAGACCGAGGCCAACGGCGAGGGCGCGTCGGACCTGTTCAAGTTCCT : 758183

    153 : uLysAsnSerCysProProThrSerGlu :    161
          |::!:::|||  !  ! !! !!|||!!:
          uArgSerSerLeuGlyAlaProSerAsp
 758184 : CCGGTCGTCCCTCGGCGCGCCGAGCGAC : 758212

vulgar: SPP00000006_1.0 56 161 . scaffold_6:subseq(475515,1952387) 757897 758212 + 192 M 20 60 G 0 3 M 15 45 G 1 0 M 69 207
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome 1.4.0
##date 2009-02-27
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	gene	757898	758212	192	+	.	gene_id 1 ; sequence SPP00000006_1.0 ; gene_orientation .
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	cds	757898	758212	.	+	.	
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	exon	757898	758212	.	+	.	insertions 3 ; deletions 1
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	similarity	757898	758212	192	+	.	alignment_id 1 ; Query SPP00000006_1.0 ; Align 757898 57 60 ; Align 757961 77 45 ; Align 758006 93 207
# --- END OF GFF DUMP ---
#

C4 Alignment:
------------
         Query: SPP00000005_1.0 # Protein # Glutathione peroxidase 2 (GPx2) # Homo sapiens # Complete
        Target: scaffold_6:subseq(475515,1952387)
         Model: protein2genome
     Raw score: 258
   Query range: 27 -> 129
  Target range: 757909 -> 758215

     28 : GlyArgAlaValLeuIleGluAsnValAlaSerLeuUnkGlyThrThrThrArgAspP :     47
          |||!:!!.!||||||:!:|||||||||||||||:!!   |||||||||..!|||||||
          GlyGlnValValLeuValGluAsnValAlaSerIle***GlyThrThrValArgAspP
 757910 : GGCCAGGTCGTGCTCGTGGAAAACGTCGCGAGTATCTGAGGCACGACGGTCAGGGACT : 757967

     48 : heThrGlnLeuAsnGluLeuGlnCysArgPheProArgArgLeuValValLeuGlyPh :     66
          ||||||||:!!|||!!:|||      !:!||| !! !!!:!!!!..!  !||||||||
          heThrGlnMetAsnAspLeuThrGluLysPheAlaGlyLysPheThrCysLeuGlyPh
 757968 : TCACGCAGATGAACGACCTGACCGAGAAATTCGCCGGCAAGTTCACGTGCCTCGGCTT : 758024

     67 : eProCysAsnGlnPheGlyHisGlnGluAsnCysGlnAsnGluGluIleLeuAsnSer :     85
          ||||   |||||||||||| ! |||  !|||   :!!:!!  !|||:!:|||  !! !
          eProThrAsnGlnPheGlyLysGlnThrAsnGluLysAspTrpGluLeuLeuProMet
 758025 : CCCGACGAACCAGTTCGGGAAGCAGACGAACGAGAAGGACTGGGAGCTGCTGCCCATG : 758081

     86 : LeuLysTyrValArgProGlyGlyGlyTyrGlnProThrPheThrLeuValGlnLysC :    105
          |||  !:!!||||||||||||||||||!:!  !|||!.!||| !!:!! !!   ||| 
          LeuAlaHisValArgProGlyGlyGlyPheValProAsnPheProIlePheThrLysT
 758082 : CTCGCGCACGTGCGCCCCGGCGGCGGCTTCGTGCCCAACTTCCCCATCTTCACCAAGA : 758141

    106 : ysGluValAsnGlyGlnAsnGluHisProValPheAlaTyrLeuLysAspLysLeuPr :    124
           !|||!.!||||||:!!..!! !     !:!!|||  !!:!|||::!......|||  
          hrGluAlaAsnGlyGluGlyAlaSerAspLeuPheLysPheLeuArgSerSerLeuGl
 758142 : CCGAGGCCAACGGCGAGGGCGCGTCGGACCTGTTCAAGTTCCTCCGGTCGTCCCTCGG : 758198

    125 : oTyrProTyrAspAsp :    129
          !   |||  !||||||
          yAlaProSerAspAsp
 758199 : CGCGCCGAGCGACGAC : 758215

vulgar: SPP00000005_1.0 27 129 . scaffold_6:subseq(475515,1952387) 757909 758215 + 258 M 102 306
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome 1.4.0
##date 2009-02-27
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	gene	757910	758215	258	+	.	gene_id 1 ; sequence SPP00000005_1.0 ; gene_orientation .
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	cds	757910	758215	.	+	.	
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	exon	757910	758215	.	+	.	insertions 0 ; deletions 0
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	similarity	757910	758215	258	+	.	alignment_id 1 ; Query SPP00000005_1.0 ; Align 757910 28 306
# --- END OF GFF DUMP ---
#

C4 Alignment:
------------
         Query: SPP00000005_1.0 # Protein # Glutathione peroxidase 2 (GPx2) # Homo sapiens # Complete
        Target: scaffold_6:subseq(475515,1952387)
         Model: protein2genome
     Raw score: 124
   Query range: 137 -> 187
  Target range: 758251 -> 758475

    138 : LysLeuIleIleTrpSerProValArg{A}  >>>> Target Intron 1 >>>>  :    147
          |||  !|||||||||!!!||||||! !{|}            74 bp           
          LysAsnIleIleTrpThrProValThr{A}+-                         +
 758252 : AAGAACATCATCTGGACGCCCGTGACG{C}gc.........................a : 758352

    148 :  {rg}SerAspValAlaTrpAsnPheGluLysPheLeuIleGlyProGluGlyGluPr :    165
           {||}!!!|||:!!|||||||||||||||||||||||||||..!! !||||||:!!||
          +{rg}ThrAspLeuAlaTrpAsnPheGluLysPheLeuIleAsnGlnGluGlyLysPr
 758353 : g{GC}ACGGACCTCGCCTGGAACTTCGAGAAGTTCCTCATCAACCAGGAGGGCAAGCC : 758407

    166 : oPheArgArgTyrSerArgThrPheProThrIleAsnIleGluProAspIleLysArg :    184
          | ! !:!|||||||||! !  !|||! !|||   :!!:!!!   !!|||:!!:!!  !
          oValLysArgTyrSerProGlyPheLeuThrAlaAspValAlaAlaAspValGluAla
 758408 : CGTGAAGCGCTACTCGCCGGGCTTCCTGACCGCGGACGTCGCCGCGGACGTCGAGGCC : 758464

    185 : LeuLeuLys :    187
          ||||||:!!
          LeuLeuGlu
 758465 : CTCCTCGAG : 758475

vulgar: SPP00000005_1.0 137 187 . scaffold_6:subseq(475515,1952387) 758251 758475 + 124 M 9 27 S 0 1 5 0 2 I 0 70 3 0 2 S 1 2 M 40 120
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome 1.4.0
##date 2009-02-27
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	gene	758252	758475	124	+	.	gene_id 2 ; sequence SPP00000005_1.0 ; gene_orientation +
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	cds	758252	758279	.	+	.	
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	exon	758252	758279	.	+	.	insertions 0 ; deletions 0
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	splice5	758280	758281	.	+	.	intron_id 1 ; splice_site "GC"
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	intron	758280	758353	.	+	.	intron_id 1
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	splice3	758352	758353	.	+	.	intron_id 0 ; splice_site "AG"
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	cds	758354	758475	.	+	.	
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	exon	758354	758475	.	+	.	insertions 0 ; deletions 0
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	similarity	758252	758475	124	+	.	alignment_id 2 ; Query SPP00000005_1.0 ; Align 758252 138 27 ; Align 758356 148 120
# --- END OF GFF DUMP ---
#

C4 Alignment:
------------
         Query: SPP00000011_1.0 # Protein # Glutathione peroxidase 8 (GPx8) # Homo sapiens # Complete
        Target: scaffold_6:subseq(475515,1952387)
         Model: protein2genome
     Raw score: 150
   Query range: 56 -> 161
  Target range: 1948970 -> 1949276

      57 : GlyArgThrValSerLeuGluLysTyrLysGlyLysValSerLeuValValAsnVa :      75
           ||| !!.!!|||!!!|||..!!  |||  !!.!!:!!.!  !|||:!! !!|||  
           GlyGlyAlaValThrLeuSerThrTyrAlaAlaArgAlaHisLeuIlePheAsnSe
 1948971 : GGCGGCGCGGTGACGCTGTCGACCTACGCGGCGAGGGCCCATTTGATCTTCAACTC : 1949025

      76 : lAlaSerAspCysGlnLeuThrAspArgAsnTyrLeuGlyLeuLysGluLeuHisL :      94
           !|||||| ! |||   :!!|||   !:!     !  !|||!!!:!!! !|||!!. 
           rAlaSerLysCysGlyMetThrProGln---LeuGlyGlyPheGlnAlaLeuGlnA
 1949026 : GGCGTCCAAGTGCGGCATGACGCCGCAG---CTCGGTGGCTTTCAGGCGCTCCAGG : 1949079

      95 : ysGluPheGlyProSerHisPheSerValLeuAlaPheProCysAsnGlnPheGly :     112
             :!!||||||   ..!!...!!..!||||||||||||||||||:!!||||||   
           laLysPheGly---AspArgLeuGlnValLeuAlaPheProCysAspGlnPhe---
 1949080 : CCAAGTTCGGC---GACCGGCTCCAGGTCCTGGCCTTCCCCTGCGACCAGTTC--- : 1949130

     113 : GluSerGluProArgProSerLysGluValGluSerPheAlaArgLysAsnTyrGl :     131
           :!!..!|||||| !! !! !!  !|||:!!! !:!!|||  !  ! ! !!.!:!||
           LysGlnGluProGlySerProAlaGluIleAlaAlaPheTyrAlaAspLysPheGl
 1949131 : AAGCAGGAGCCGGGCTCGCCCGCGGAGATCGCGGCGTTCTACGCGGACAAGTTCGG : 1949184

     132 : yValThrPheProIlePheHisLysIleLysIleLeuGlySerGluGlyGluProA :     150
           |||||||||||||:!!|||  !|||  ! ! :!!  !||| !!!!:!.!.!.||| 
           yValThrPheProLeuPheAlaLysGlyAspValAsnGlyProAspAlaHisProL
 1949185 : CGTCACGTTCCCCCTCTTCGCCAAGGGCGACGTCAACGGCCCGGACGCGCACCCGC : 1949241

     151 : laPheArgPheLeuValAspSerSerLysLysGlu :     161
            !|||  !||||||  !!!::!!!!!||| ! :!!
           euPheAlaPheLeuLysGluAlaThrLysAspGln
 1949242 : TCTTCGCCTTCCTGAAGGAGGCGACCAAGGACCAG : 1949276

vulgar: SPP00000011_1.0 56 161 . scaffold_6:subseq(475515,1952387) 1948970 1949276 + 150 M 28 84 G 1 0 M 12 36 G 1 0 M 13 39 G 1 0 M 49 147
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome 1.4.0
##date 2009-02-27
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	gene	1948971	1949276	150	+	.	gene_id 1 ; sequence SPP00000011_1.0 ; gene_orientation .
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	cds	1948971	1949276	.	+	.	
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	exon	1948971	1949276	.	+	.	insertions 0 ; deletions 3
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	similarity	1948971	1949276	150	+	.	alignment_id 1 ; Query SPP00000011_1.0 ; Align 1948971 57 84 ; Align 1949055 86 36 ; Align 1949091 99 39 ; Align 1949130 113 147
# --- END OF GFF DUMP ---
#

C4 Alignment:
------------
         Query: SPP00000011_1.0 # Protein # Glutathione peroxidase 8 (GPx8) # Homo sapiens # Complete
        Target: scaffold_6:subseq(475515,1952387)
         Model: protein2genome
     Raw score: 115
   Query range: 100 -> 162
  Target range: 1395331 -> 1395514

     101 : PheSerValLeuAlaPheProCysAsnGlnPheGlyGluSerGluProArgProSe :     119
           .!!:!!||||||||||||||||||:!!|||||||||!  ..!|||||| !! !!:!
           LeuAlaValLeuAlaPheProCysAspGlnPheGlyGlyGlnGluProGlySerAl
 1395332 : CTCGCGGTCCTCGCCTTCCCCTGCGACCAGTTCGGCGGCCAGGAGCCGGGCTCGGC : 1395386

     120 : rLysGluValGluSerPheAlaArgLysAsnTyrGlyValThrPheProIlePheH :     138
           !   !!::!!.....!   |||  ! ! ..!|||||||||  !||||||:!!|||.
           aGlyAspIleArgAsp---AlaTyrAspArgTyrGlyValAspPheProValPheG
 1395387 : GGGCGACATCCGCGAC---GCCTACGACCGCTACGGCGTCGATTTTCCCGTCTTCG : 1395440

     139 : isLysIleLysIleLeuGlySerGluGlyGluProAlaPheArgPheLeuValAsp :     156
           !.|||! ! ! :!!  !||| !!...!.!.!.|||  !|||! !!:!|||  ! ! 
           luLysSerAspValAsnGlyProArgAlaHisProLeuPheThrTyrLeuLysLys
 1395441 : AGAAGAGCGACGTCAACGGGCCGCGCGCGCACCCGCTCTTCACCTACCTGAAGAAA : 1395494

     157 : SerSerLysLysGluPro :     162
           :!!!!!  !  !:!!|||
           AlaThrAlaGlyGlnPro
 1395495 : GCCACCGCGGGGCAGCCC : 1395514

vulgar: SPP00000011_1.0 100 162 . scaffold_6:subseq(475515,1952387) 1395331 1395514 + 115 M 24 72 G 1 0 M 37 111
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome 1.4.0
##date 2009-02-27
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	gene	1395332	1395514	115	+	.	gene_id 2 ; sequence SPP00000011_1.0 ; gene_orientation .
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	cds	1395332	1395514	.	+	.	
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	exon	1395332	1395514	.	+	.	insertions 0 ; deletions 1
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	similarity	1395332	1395514	115	+	.	alignment_id 2 ; Query SPP00000011_1.0 ; Align 1395332 101 72 ; Align 1395404 126 111
# --- END OF GFF DUMP ---
#

C4 Alignment:
------------
         Query: SPP00000071_1.0 # Protein # Glutathione peroxidase 7 (GPx7) # Pan troglodytes # Complete
        Target: scaffold_6:subseq(475515,1952387)
         Model: protein2genome
     Raw score: 160
   Query range: 13 -> 132
  Target range: 1948904 -> 1949255

      14 : TrpAlaAlaAlaCysAlaGlnGlnGluGlnAspPheTyrAspPheLysAlaValAs :      32
           !::|||||||||   |||            ..!!:!  !||||||   !.!!.!  
           TyrAlaAlaAlaProAlaAlaAlaAlaAlaSerTyrSerAspPheAlaValAlaPr
 1948905 : TAcgccgcggcgccggcggccgcggccgcgAGCTACAGCGACTTCGCCGTGGCGCC : 1948959

      33 : nIle<->ArgGlyLysLeuValSerLeuGluLysTyrArgGlySerValSerLeuV :      50
           !:!!    !!|||     !|||!!!|||..!!  |||  !!.!!!!!.!  !|||:
           oLeuGlyGlyGlyGlyAlaValThrLeuSerThrTyrAlaAlaArgAlaHisLeuI
 1948960 : CCTCGGCGGCGGCGGCGCGGTGACGCTGTCGACCTACGCGGCGAGGGCCCATTTGA : 1949016

      51 : alValAsnValAlaSerGluCysGlyPheThrAspGlnHisTyrArgAlaLeuGln :      68
           !! !!|||  !||||||:!!||||||.!.|||   |||     ! !!!.!!!!|||
           lePheAsnSerAlaSerLysCysGlyMetThrProGln---LeuGlyGlyPheGln
 1949017 : TCTTCAACTCGGCGTCCAAGTGCGGCATGACGCCGCAG---CTCGGTGGCTTTCAG : 1949067

      69 : GlnLeuGlnArgAspLeuGlyProHisHisPheAsnValLeuAlaPheProCysAs :      87
             !||||||  ! ! !!!|||    !!!...!!.!.||||||||||||||||||:!
           AlaLeuGlnAlaLysPheGly---AspArgLeuGlnValLeuAlaPheProCysAs
 1949068 : GCGCTCCAGGCCAAGTTCGGC---GACCGGCTCCAGGTCCTGGCCTTCCCCTGCGA : 1949121

      88 : nGlnPheGlyGlnGlnGluProAspSerAsnLysGluIleGluSerPheAlaArgA :     106
           !||||||   :!!|||||||||! !|||  !  !||||||! !:!!|||  !  ! 
           pGlnPhe---LysGlnGluProGlySerProAlaGluIleAlaAlaPheTyrAlaA
 1949122 : CCAGTTC---AAGCAGGAGCCGGGCTCGCCCGCGGAGATCGCGGCGTTCTACGCGG : 1949175

     107 : rgThrTyrSerValSerPheProMetPheSerLysIleAlaValThrGlyThrGly :     124
            !! !!:!.!!|||!!!||||||:!:|||:!!|||  !! !|||!.!||| !!! !
           spLysPheGlyValThrPheProLeuPheAlaLysGlyAspValAsnGlyProAsp
 1949176 : ACAAGTTCGGCGTCACGTTCCCCCTCTTCGCCAAGGGCGACGTCAACGGCCCGGAC : 1949229

     125 : AlaHisProAlaPheLysTyrLeu :     132
           |||||||||  !|||   !:!|||
           AlaHisProLeuPheAlaPheLeu
 1949230 : GCGCACCCGCTCTTCGCCTTCCTG : 1949255

vulgar: SPP00000071_1.0 13 132 . scaffold_6:subseq(475515,1952387) 1948904 1949255 + 160 M 20 60 G 0 3 M 29 87 G 1 0 M 12 36 G 1 0 M 13 39 G 1 0 M 42 126
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome 1.4.0
##date 2009-02-27
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	gene	1948905	1949255	160	+	.	gene_id 1 ; sequence SPP00000071_1.0 ; gene_orientation .
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	cds	1948905	1949255	.	+	.	
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	exon	1948905	1949255	.	+	.	insertions 3 ; deletions 3
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	similarity	1948905	1949255	160	+	.	alignment_id 1 ; Query SPP00000071_1.0 ; Align 1948905 14 60 ; Align 1948968 34 87 ; Align 1949055 64 36 ; Align 1949091 77 39 ; Align 1949130 91 126
# --- END OF GFF DUMP ---
#

C4 Alignment:
------------
         Query: SPP00000071_1.0 # Protein # Glutathione peroxidase 7 (GPx7) # Pan troglodytes # Complete
        Target: scaffold_6:subseq(475515,1952387)
         Model: protein2genome
     Raw score: 127
   Query range: 80 -> 134
  Target range: 1395337 -> 1395496

      81 : ValLeuAlaPheProCysAsnGlnPheGlyGlnGlnGluProAspSerAsnLysGl :      99
           ||||||||||||||||||:!!|||||||||   |||||||||! !|||      !!
           ValLeuAlaPheProCysAspGlnPheGlyGlyGlnGluProGlySerAlaGlyAs
 1395338 : GTCCTCGCCTTCCCCTGCGACCAGTTCGGCGGCCAGGAGCCGGGCTCGGCGGGCGA : 1395392

     100 : uIleGluSerPheAlaArgArgThrTyrSerValSerPheProMetPheSerLysI :     118
           :|||.....!   |||  !  !  !|||.!!|||..!||||||:!:|||..!|||!
           pIleArgAsp---AlaTyrAspArgTyrGlyValAspPheProValPheGluLysS
 1395393 : CATCCGCGAC---GCCTACGACCGCTACGGCGTCGATTTTCCCGTCTTCGAGAAGA : 1395446

     119 : leAlaValThrGlyThrGlyAlaHisProAlaPheLysTyrLeuAlaArg :     134
            !! !|||!.!||| !! !!|||||||||  !|||!  ||||||  !!:!
           erAspValAsnGlyProArgAlaHisProLeuPheThrTyrLeuLysLys
 1395447 : GCGACGTCAACGGGCCGCGCGCGCACCCGCTCTTCACCTACCTGAAGAAA : 1395496

vulgar: SPP00000071_1.0 80 134 . scaffold_6:subseq(475515,1952387) 1395337 1395496 + 127 M 22 66 G 1 0 M 31 93
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome 1.4.0
##date 2009-02-27
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	gene	1395338	1395496	127	+	.	gene_id 2 ; sequence SPP00000071_1.0 ; gene_orientation .
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	cds	1395338	1395496	.	+	.	
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	exon	1395338	1395496	.	+	.	insertions 0 ; deletions 1
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	similarity	1395338	1395496	127	+	.	alignment_id 2 ; Query SPP00000071_1.0 ; Align 1395338 81 66 ; Align 1395404 104 93
# --- END OF GFF DUMP ---
#

C4 Alignment:
------------
         Query: SPP00000010_1.0 # Protein # Glutathione peroxidase 7 (GPx7) # Homo sapiens # Complete
        Target: scaffold_6:subseq(475515,1952387)
         Model: protein2genome
     Raw score: 162
   Query range: 13 -> 136
  Target range: 1948904 -> 1949267

      14 : TrpAlaAlaAlaCysAlaGlnGlnGluGlnAspPheTyrAspPheLysAlaValAs :      32
           !::|||||||||   |||            ..!!:!  !||||||   !.!!.!  
           TyrAlaAlaAlaProAlaAlaAlaAlaAlaSerTyrSerAspPheAlaValAlaPr
 1948905 : TAcgccgcggcgccggcggccgcggccgcgAGCTACAGCGACTTCGCCGTGGCGCC : 1948959

      33 : nIle<->ArgGlyLysLeuValSerLeuGluLysTyrArgGlySerValSerLeuV :      50
           !:!!    !!|||     !|||!!!|||..!!  |||  !!.!!!!!.!  !|||:
           oLeuGlyGlyGlyGlyAlaValThrLeuSerThrTyrAlaAlaArgAlaHisLeuI
 1948960 : CCTCGGCGGCGGCGGCGCGGTGACGCTGTCGACCTACGCGGCGAGGGCCCATTTGA : 1949016

      51 : alValAsnValAlaSerGluCysGlyPheThrAspGlnHisTyrArgAlaLeuGln :      68
           !! !!|||  !||||||:!!||||||.!.|||   |||     ! !!!.!!!!|||
           lePheAsnSerAlaSerLysCysGlyMetThrProGln---LeuGlyGlyPheGln
 1949017 : TCTTCAACTCGGCGTCCAAGTGCGGCATGACGCCGCAG---CTCGGTGGCTTTCAG : 1949067

      69 : GlnLeuGlnArgAspLeuGlyProHisHisPheAsnValLeuAlaPheProCysAs :      87
             !||||||  ! ! !!!|||    !!!...!!.!.||||||||||||||||||:!
           AlaLeuGlnAlaLysPheGly---AspArgLeuGlnValLeuAlaPheProCysAs
 1949068 : GCGCTCCAGGCCAAGTTCGGC---GACCGGCTCCAGGTCCTGGCCTTCCCCTGCGA : 1949121

      88 : nGlnPheGlyGlnGlnGluProAspSerAsnLysGluIleGluSerPheAlaArgA :     106
           !||||||   :!!|||||||||! !|||  !  !||||||! !:!!|||  !  ! 
           pGlnPhe---LysGlnGluProGlySerProAlaGluIleAlaAlaPheTyrAlaA
 1949122 : CCAGTTC---AAGCAGGAGCCGGGCTCGCCCGCGGAGATCGCGGCGTTCTACGCGG : 1949175

     107 : rgThrTyrSerValSerPheProMetPheSerLysIleAlaValThrGlyThrGly :     124
            !! !!:!.!!|||!!!||||||:!:|||:!!|||  !! !|||!.!||| !!! !
           spLysPheGlyValThrPheProLeuPheAlaLysGlyAspValAsnGlyProAsp
 1949176 : ACAAGTTCGGCGTCACGTTCCCCCTCTTCGCCAAGGGCGACGTCAACGGCCCGGAC : 1949229

     125 : AlaHisProAlaPheLysTyrLeuAlaGlnThrSer :     136
           |||||||||  !|||   !:!|||  !:!!.!!!!!
           AlaHisProLeuPheAlaPheLeuLysGluAlaThr
 1949230 : GCGCACCCGCTCTTCGCCTTCCTGAAGGAGGCGACC : 1949267

vulgar: SPP00000010_1.0 13 136 . scaffold_6:subseq(475515,1952387) 1948904 1949267 + 162 M 20 60 G 0 3 M 29 87 G 1 0 M 12 36 G 1 0 M 13 39 G 1 0 M 46 138
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome 1.4.0
##date 2009-02-27
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	gene	1948905	1949267	162	+	.	gene_id 1 ; sequence SPP00000010_1.0 ; gene_orientation .
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	cds	1948905	1949267	.	+	.	
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	exon	1948905	1949267	.	+	.	insertions 3 ; deletions 3
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	similarity	1948905	1949267	162	+	.	alignment_id 1 ; Query SPP00000010_1.0 ; Align 1948905 14 60 ; Align 1948968 34 87 ; Align 1949055 64 36 ; Align 1949091 77 39 ; Align 1949130 91 138
# --- END OF GFF DUMP ---
#

C4 Alignment:
------------
         Query: SPP00000010_1.0 # Protein # Glutathione peroxidase 7 (GPx7) # Homo sapiens # Complete
        Target: scaffold_6:subseq(475515,1952387)
         Model: protein2genome
     Raw score: 136
   Query range: 80 -> 143
  Target range: 1395337 -> 1395523

      81 : ValLeuAlaPheProCysAsnGlnPheGlyGlnGlnGluProAspSerAsnLysGl :      99
           ||||||||||||||||||:!!|||||||||   |||||||||! !|||      !!
           ValLeuAlaPheProCysAspGlnPheGlyGlyGlnGluProGlySerAlaGlyAs
 1395338 : GTCCTCGCCTTCCCCTGCGACCAGTTCGGCGGCCAGGAGCCGGGCTCGGCGGGCGA : 1395392

     100 : uIleGluSerPheAlaArgArgThrTyrSerValSerPheProMetPheSerLysI :     118
           :|||.....!   |||  !  !  !|||.!!|||..!||||||:!:|||..!|||!
           pIleArgAsp---AlaTyrAspArgTyrGlyValAspPheProValPheGluLysS
 1395393 : CATCCGCGAC---GCCTACGACCGCTACGGCGTCGATTTTCCCGTCTTCGAGAAGA : 1395446

     119 : leAlaValThrGlyThrGlyAlaHisProAlaPheLysTyrLeuAlaGlnThrSer :     136
            !! !|||!.!||| !! !!|||||||||  !|||!  ||||||  !:!!.!!!!!
           erAspValAsnGlyProArgAlaHisProLeuPheThrTyrLeuLysLysAlaThr
 1395447 : GCGACGTCAACGGGCCGCGCGCGCACCCGCTCTTCACCTACCTGAAGAAAGCCACC : 1395500

     137 : GlyLysGluProThrTrpAsn :     143
           !.!  !:!!|||..!  !|||
           AlaGlyGlnProValProAsn
 1395501 : GCGGGGCAGCCCGTGCCGAAC : 1395523

vulgar: SPP00000010_1.0 80 143 . scaffold_6:subseq(475515,1952387) 1395337 1395523 + 136 M 22 66 G 1 0 M 40 120
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome 1.4.0
##date 2009-02-27
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	gene	1395338	1395523	136	+	.	gene_id 2 ; sequence SPP00000010_1.0 ; gene_orientation .
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	cds	1395338	1395523	.	+	.	
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	exon	1395338	1395523	.	+	.	insertions 0 ; deletions 1
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	similarity	1395338	1395523	136	+	.	alignment_id 2 ; Query SPP00000010_1.0 ; Align 1395338 81 66 ; Align 1395404 104 120
# --- END OF GFF DUMP ---
#

C4 Alignment:
------------
         Query: SPP00000102_1.0 # Protein # Glutathione peroxidase 5 (GPx5) # Mus musculus # Complete
        Target: scaffold_6:subseq(475515,1952387)
         Model: protein2genome
     Raw score: 185
   Query range: 72 -> 177
  Target range: 757897 -> 758212

     73 : LysGlnTyrAlaGlyLysHisValLeuPheValAsnValAlaThrTyrCysGlyLeuT :     92
          :::!:!! !  !|||:!!  !|||||| ! ! !|||||||||!:!  !!! |||  !|
          ArgArgSerLeuGlyGlnValValLeuValGluAsnValAlaSerIle***GlyThrT
 757898 : CGCCGATCTTTAGGCCAGGTCGTGCTCGTGGAAAACGTCGCGAGTATCTGAGGCACGA : 757955

     93 : hrIleGln<->TyrProGluLeuAsnAlaLeuGlnGluAspLeuLysProPheGlyLe :    110
          ||:!!::!   !:! !!:!!:!!|||! !|||   ||| ! !!!     !     !!!
          hrValArgAspPheThrGlnMetAsnAspLeuThrGluLysPheAlaGly---LysPh
 757956 : CGGTCAGGGACTTCACGCAGATGAACGACCTGACCGAGAAATTCGCCGGC---AAGTT : 758009

    111 : uValIleLeuGlyPheProCysAsnGlnPheGlyLysGlnGluProGlyAspAsnLeu :    129
          !..!  !||||||||||||   ||||||||||||||||||  !  !! ! ! :!!! !
          eThrCysLeuGlyPheProThrAsnGlnPheGlyLysGlnThrAsnGluLysAspTrp
 758010 : CACGTGCCTCGGCTTCCCGACGAACCAGTTCGGGAAGCAGACGAACGAGAAGGACTGG : 758066

    130 : GluIleLeuProGlyLeuLysTyrValArgProGlyLysGlyPheLeuProAsnPheG :    149
          |||:!:||||||  !|||  !:!!||||||||||||   ||||||:!!|||||||||!
          GluLeuLeuProMetLeuAlaHisValArgProGlyGlyGlyPheValProAsnPheP
 758067 : GAGCTGCTGCCCATGCTCGCGCACGTGCGCCCCGGCGGCGGCTTCGTGCCCAACTTCC : 758126

    150 : lnLeuPheAlaLysGlyAspValAsnGlyGluAsnGluGlnLysIlePheThrPheLe :    168
            :!!|||.!!|||  !!!:!.!|||||||||..!! !..! ! :!:|||! !|||||
          roIlePheThrLysThrGluAlaAsnGlyGluGlyAlaSerAspLeuPheLysPheLe
 758127 : CCATCTTCACCAAGACCGAGGCCAACGGCGAGGGCGCGTCGGACCTGTTCAAGTTCCT : 758183

    169 : uLysArgSerCysProHisProSerGlu :    177
          |::!  !|||  !  !   ||||||!!:
          uArgSerSerLeuGlyAlaProSerAsp
 758184 : CCGGTCGTCCCTCGGCGCGCCGAGCGAC : 758212

vulgar: SPP00000102_1.0 72 177 . scaffold_6:subseq(475515,1952387) 757897 758212 + 185 M 22 66 G 0 3 M 13 39 G 1 0 M 69 207
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome 1.4.0
##date 2009-02-27
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	gene	757898	758212	185	+	.	gene_id 1 ; sequence SPP00000102_1.0 ; gene_orientation .
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	cds	757898	758212	.	+	.	
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	exon	757898	758212	.	+	.	insertions 3 ; deletions 1
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	similarity	757898	758212	185	+	.	alignment_id 1 ; Query SPP00000102_1.0 ; Align 757898 73 66 ; Align 757967 95 39 ; Align 758006 109 207
# --- END OF GFF DUMP ---
#

C4 Alignment:
------------
         Query: SPP00000070_1.0 # Protein # Glutathione peroxidase 6 (GPx6) # Pan troglodytes # Complete
        Target: scaffold_6:subseq(475515,1952387)
         Model: protein2genome
     Raw score: 149
   Query range: 56 -> 161
  Target range: 757897 -> 758212

     57 : LysGlnPheAlaGlyLysHisValLeuPheValAsnValAlaThrTyrUnkGlyLeuA :     76
          :::!:!! !  !|||:!!  !|||||| ! ! !|||||||||!:!  !   |||  !.
          ArgArgSerLeuGlyGlnValValLeuValGluAsnValAlaSerIle***GlyThrT
 757898 : CGCCGATCTTTAGGCCAGGTCGTGCTCGTGGAAAACGTCGCGAGTATCTGAGGCACGA : 757955

     77 : laAlaGln<->TyrProGluLeuAsnAlaLeuGlnGluGluLeuLysAsnPheGlyVa :     94
          !!!.!::!   !:! !!:!!:!!|||! !|||   |||:!!!!!   ..!     ! !
          hrValArgAspPheThrGlnMetAsnAspLeuThrGluLysPheAlaGly---LysPh
 757956 : CGGTCAGGGACTTCACGCAGATGAACGACCTGACCGAGAAATTCGCCGGC---AAGTT : 758009

     95 : lIleValLeuAlaPheProCysAsnGlnPheGlyLysGlnGluProGlyThrAsnSer :    113
          !!    !|||!.!||||||   ||||||||||||||||||  !  !! !! !:!!!!!
          eThrCysLeuGlyPheProThrAsnGlnPheGlyLysGlnThrAsnGluLysAspTrp
 758010 : CACGTGCCTCGGCTTCCCGACGAACCAGTTCGGGAAGCAGACGAACGAGAAGGACTGG : 758066

    114 : GluIleLeuLeuGlyLeuLysTyrValCysProGlySerGlyPheValProSerPheG :    133
          |||:!:|||! !  !|||  !:!!||| !!||||||.!!||||||||||||!:!|||!
          GluLeuLeuProMetLeuAlaHisValArgProGlyGlyGlyPheValProAsnPheP
 758067 : GAGCTGCTGCCCATGCTCGCGCACGTGCGCCCCGGCGGCGGCTTCGTGCCCAACTTCC : 758126

    134 : lnLeuPheGluLysGlyAspValAsnGlyGluLysGluGlnLysValPheThrPheLe :    152
            :!!|||   |||  !!!:!.!|||||||||   ! !..! ! :!!|||! !|||||
          roIlePheThrLysThrGluAlaAsnGlyGluGlyAlaSerAspLeuPheLysPheLe
 758127 : CCATCTTCACCAAGACCGAGGCCAACGGCGAGGGCGCGTCGGACCTGTTCAAGTTCCT : 758183

    153 : uLysAsnSerCysProProThrSerAsp :    161
          |::!:::|||  !  ! !! !!||||||
          uArgSerSerLeuGlyAlaProSerAsp
 758184 : CCGGTCGTCCCTCGGCGCGCCGAGCGAC : 758212

vulgar: SPP00000070_1.0 56 161 . scaffold_6:subseq(475515,1952387) 757897 758212 + 149 M 22 66 G 0 3 M 13 39 G 1 0 M 69 207
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome 1.4.0
##date 2009-02-27
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	gene	757898	758212	149	+	.	gene_id 1 ; sequence SPP00000070_1.0 ; gene_orientation .
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	cds	757898	758212	.	+	.	
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	exon	757898	758212	.	+	.	insertions 3 ; deletions 1
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	similarity	757898	758212	149	+	.	alignment_id 1 ; Query SPP00000070_1.0 ; Align 757898 57 66 ; Align 757967 79 39 ; Align 758006 93 207
# --- END OF GFF DUMP ---
#

C4 Alignment:
------------
         Query: SPP00000070_1.0 # Protein # Glutathione peroxidase 6 (GPx6) # Pan troglodytes # Complete
        Target: scaffold_6:subseq(475515,1952387)
         Model: protein2genome
     Raw score: 101
   Query range: 38 -> 115
  Target range: 1395172 -> 1395397

      39 : ThrIleTyrGluTyrGlyAlaLeuThrLeuAsnGlyGluGluTyrIleGlnPheLy :      57
           |||  !!::!!:!:!! !  !:!! !!|||..!|||!  ! !  !:!:  !     
           ThrTyrTrpAspPheGluLeuValProLeuGlyGlyGlyAlaProLeuThrProAl
 1395173 : ACGTACTGGGACTTCGAGCTCGTGCCCCTCGGCGGCGGCGCGCCCCTGACGCCGGC : 1395227

      58 : sGlnPheAlaGlyLysHisValLeuPheValAsnValAlaThrTyrUnkGlyLeuA :      76
           !!:!!:!  ! !!:::     !||| !!||||||..!|||!:!  !   |||!!!|
           aArgTyrArgArgArgAlaHisLeuValValAsnThrAlaSerArgCysGlyPheA
 1395228 : GCGGTACCGGCGCCGCGCGCACCTCGTCGTCAACACGGCCAGCCGCTGCGGCTTCG : 1395284

      77 : laAlaGlnTyrProGluLeuAsnAlaLeuGlnGluGluLeuLysAsnPheGlyVal :      94
           || !!|||  !! !||||||.!.||||||  !! !...! !  !      |||:!!
           laProGlnLeuArgGluLeuGlnAlaLeuTrpAlaArgTyrPro------GlyLeu
 1395285 : CGCCGCAGCTCCGCGAGCTGCAGGCCCTCTGGGCGCGCTACCCG------GGCCTC : 1395332

      95 : IleValLeuAlaPheProCysAsnGlnPheGlyLysGlnGluProGlyThrAsnSe :     113
              ||||||||||||||||||:!!|||||||||   ||||||||||||:!!   .!
           AlaValLeuAlaPheProCysAspGlnPheGlyGlyGlnGluProGlySerAlaGl
 1395333 : GCGGTCCTCGCCTTCCCCTGCGACCAGTTCGGCGGCCAGGAGCCGGGCTCGGCGGG : 1395389

     114 : rGluIle :     115
           !!!:|||
           yAspIle
 1395390 : CGACATC : 1395397

vulgar: SPP00000070_1.0 38 115 . scaffold_6:subseq(475515,1952387) 1395172 1395397 + 101 M 52 156 G 2 0 M 23 69
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome 1.4.0
##date 2009-02-27
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	gene	1395173	1395397	101	+	.	gene_id 2 ; sequence SPP00000070_1.0 ; gene_orientation .
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	cds	1395173	1395397	.	+	.	
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	exon	1395173	1395397	.	+	.	insertions 0 ; deletions 2
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	similarity	1395173	1395397	101	+	.	alignment_id 2 ; Query SPP00000070_1.0 ; Align 1395173 39 156 ; Align 1395329 93 69
# --- END OF GFF DUMP ---
#

C4 Alignment:
------------
         Query: SPP00000101_1.0 # Protein # Glutathione peroxidase 4 (GPx4) # Mus musculus # Complete
        Target: scaffold_6:subseq(475515,1952387)
         Model: protein2genome
     Raw score: 149
   Query range: 57 -> 154
  Target range: 1395229 -> 1395511

      58 : LysTyrArgGlyPheValCysIleValThrAsnValAlaSerGlnUnkGlyLysTh :      76
           ::!|||||| !!  !!.!  !:!!|||..!|||..!||||||!::   |||   .!
           ArgTyrArgArgArgAlaHisLeuValValAsnThrAlaSerArgCysGlyPheAl
 1395230 : CGGTACCGGCGCCGCGCGCACCTCGTCGTCAACACGGCCAGCCGCTGCGGCTTCGC : 1395284

      77 : rAspValAsnTyrThrGlnLeuValAspLeuHisAlaArgTyrAlaGluCysGlyL :      95
           !      .!.  !  !:!!|||  !! !|||   ||||||||| !!      ||||
           aPro---GlnLeuArgGluLeuGlnAlaLeuTrpAlaArgTyrPro------GlyL
 1395285 : GCCG---CAGCTCCGCGAGCTGCAGGCCCTCTGGGCGCGCTACCCG------GGCC : 1395332

      96 : euArgIleLeuAlaPheProCysAsnGlnPheGlyArgGlnGluProGlySerAsn :     113
           ||  !:!!|||||||||||||||:!!||||||||| !!|||||||||||||||   
           euAlaValLeuAlaPheProCysAspGlnPheGlyGlyGlnGluProGlySerAla
 1395333 : TCGCGGTCCTCGCCTTCCCCTGCGACCAGTTCGGCGGCCAGGAGCCGGGCTCGGCG : 1395386

     114 : GlnGluIleLysGluPheAlaAlaGlyTyrAsnValLysPheAspMetTyrSerLy :     132
              !!:|||:::!!:  !  !! ! !!|||..!||| ! |||  !:!:!:!..!||
           GlyAspIleArgAspAlaTyrAspArgTyrGlyValAspPheProValPheGluLy
 1395387 : GGCGACATCCGCGACGCCTACGACCGCTACGGCGTCGATTTTCCCGTCTTCGAGAA : 1395443

     133 : sIleCysValAsnGlyAspAspAlaHisProLeuTrpLysTrpMetLysValGlnP :     151
           |! !  !|||||||||     !||||||||||||!::!  !:::!!|||  !    
           sSerAspValAsnGlyProArgAlaHisProLeuPheThrTyrLeuLysLysAlaT
 1395444 : GAGCGACGTCAACGGGCCGCGCGCGCACCCGCTCTTCACCTACCTGAAGAAAGCCA : 1395500

     152 : roLysGlyArg :     154
           !!  !|||!:!
           hrAlaGlyGln
 1395501 : CCGCGGGGCAG : 1395511

vulgar: SPP00000101_1.0 57 154 . scaffold_6:subseq(475515,1952387) 1395229 1395511 + 149 M 20 60 G 1 0 M 13 39 G 2 0 M 61 183
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome 1.4.0
##date 2009-02-27
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	gene	1395230	1395511	149	+	.	gene_id 1 ; sequence SPP00000101_1.0 ; gene_orientation .
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	cds	1395230	1395511	.	+	.	
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	exon	1395230	1395511	.	+	.	insertions 0 ; deletions 3
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	similarity	1395230	1395511	149	+	.	alignment_id 1 ; Query SPP00000101_1.0 ; Align 1395230 58 60 ; Align 1395290 79 39 ; Align 1395329 94 183
# --- END OF GFF DUMP ---
#

C4 Alignment:
------------
         Query: SPP00000101_1.0 # Protein # Glutathione peroxidase 4 (GPx4) # Mus musculus # Complete
        Target: scaffold_6:subseq(475515,1952387)
         Model: protein2genome
     Raw score: 122
   Query range: 50 -> 152
  Target range: 1948970 -> 1949270

      51 : GlyHisMetValCysLeuAspLysTyrArgGlyPheValCysIleValThrAsnVa :      69
           |||  !  !|||   |||...!  |||  !!.!   !.!  !:!::!!  !|||  
           GlyGlyAlaValThrLeuSerThrTyrAlaAlaArgAlaHisLeuIlePheAsnSe
 1948971 : GGCGGCGCGGTGACGCTGTCGACCTACGCGGCGAGGGCCCATTTGATCTTCAACTC : 1949025

      70 : lAlaSerGlnUnkGlyLysThrAspValAsnTyrThrGlnLeuValAspLeuHisA :      88
           !||||||:!!   |||! !|||      .!.  !  !   !!!  !!  |||!!.|
           rAlaSerLysCysGlyMetThrPro---GlnLeuGlyGlyPheGlnAlaLeuGlnA
 1949026 : GGCGTCCAAGTGCGGCATGACGCCG---CAGCTCGGTGGCTTTCAGGCGCTCCAGG : 1949079

      89 : laArgTyrAlaGluCysGlyLeuArgIleLeuAlaPheProCysAsnGlnPheGly :     106
           ||!:!!:!!.!!!:    !!|||!:!:!!|||||||||||||||:!!||||||   
           laLysPheGlyAsp---ArgLeuGlnValLeuAlaPheProCysAspGlnPhe---
 1949080 : CCAAGTTCGGCGAC---CGGCTCCAGGTCCTGGCCTTCCCCTGCGACCAGTTC--- : 1949130

     107 : ArgGlnGluProGlySerAsnGlnGluIleLysGluPheAlaAlaGly<->TyrAs :     124
           !:!|||||||||||||||  !  !||||||  !! !|||  !|||! !   !:!..
           LysGlnGluProGlySerProAlaGluIleAlaAlaPheTyrAlaAspLysPheGl
 1949131 : AAGCAGGAGCCGGGCTCGCCCGCGGAGATCGCGGCGTTCTACGCGGACAAGTTCGG : 1949184

     125 : nValLysPheAspMetTyrSerLysIleCysValAsnGlyAspAspAlaHisProL :     143
           !|||! !|||  !:!:!:!:!!|||  !  !|||||||||   |||||||||||||
           yValThrPheProLeuPheAlaLysGlyAspValAsnGlyProAspAlaHisProL
 1949185 : CGTCACGTTCCCCCTCTTCGCCAAGGGCGACGTCAACGGCCCGGACGCGCACCCGC : 1949241

     144 : euTrpLysTrpMetLysValGlnProLys :     152
           ||!::   !:::!!|||! !  ! !!|||
           euPheAlaPheLeuLysGluAlaThrLys
 1949242 : TCTTCGCCTTCCTGAAGGAGGCGACCAAG : 1949270

vulgar: SPP00000101_1.0 50 152 . scaffold_6:subseq(475515,1952387) 1948970 1949270 + 122 M 27 81 G 1 0 M 14 42 G 1 0 M 12 36 G 1 0 M 16 48 G 0 3 M 30 90
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome 1.4.0
##date 2009-02-27
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	gene	1948971	1949270	122	+	.	gene_id 2 ; sequence SPP00000101_1.0 ; gene_orientation .
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	cds	1948971	1949270	.	+	.	
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	exon	1948971	1949270	.	+	.	insertions 3 ; deletions 3
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	similarity	1948971	1949270	122	+	.	alignment_id 2 ; Query SPP00000101_1.0 ; Align 1948971 51 81 ; Align 1949052 79 42 ; Align 1949094 94 36 ; Align 1949130 107 48 ; Align 1949181 123 90
# --- END OF GFF DUMP ---
#

C4 Alignment:
------------
         Query: SPP00000068_1.0 # Protein # Glutathione peroxidase 4 (GPx4) # Pan troglodytes # Complete
        Target: scaffold_6:subseq(475515,1952387)
         Model: protein2genome
     Raw score: 152
   Query range: 57 -> 156
  Target range: 1395229 -> 1395517

      58 : LysTyrArgGlyPheValCysIleValThrAsnValAlaSerGlnUnkGlyLysTh :      76
           ::!|||||| !!  !!.!  !:!!|||..!|||..!||||||!::   |||   .!
           ArgTyrArgArgArgAlaHisLeuValValAsnThrAlaSerArgCysGlyPheAl
 1395230 : CGGTACCGGCGCCGCGCGCACCTCGTCGTCAACACGGCCAGCCGCTGCGGCTTCGC : 1395284

      77 : rGluValAsnTyrThrGlnLeuValAspLeuHisAlaArgTyrAlaGluCysGlyL :      95
           !  !   .!.  !  !:!!|||  !! !|||   ||||||||| !!      ||||
           aPro---GlnLeuArgGluLeuGlnAlaLeuTrpAlaArgTyrPro------GlyL
 1395285 : GCCG---CAGCTCCGCGAGCTGCAGGCCCTCTGGGCGCGCTACCCG------GGCC : 1395332

      96 : euArgIleLeuAlaPheProCysAsnGlnPheGlyLysGlnGluProGlySerAsn :     113
           ||  !:!!|||||||||||||||:!!|||||||||   |||||||||||||||   
           euAlaValLeuAlaPheProCysAspGlnPheGlyGlyGlnGluProGlySerAla
 1395333 : TCGCGGTCCTCGCCTTCCCCTGCGACCAGTTCGGCGGCCAGGAGCCGGGCTCGGCG : 1395386

     114 : GluGluIleLysGluPheAlaAlaGlyTyrAsnValLysPheAspMetPheSerLy :     132
           !  !!:|||:::!!:  !  !! ! !!|||..!||| ! |||  !:!:|||..!||
           GlyAspIleArgAspAlaTyrAspArgTyrGlyValAspPheProValPheGluLy
 1395387 : GGCGACATCCGCGACGCCTACGACCGCTACGGCGTCGATTTTCCCGTCTTCGAGAA : 1395443

     133 : sIleCysValAsnGlyAspAspAlaHisProLeuTrpLysTrpMetLysIleGlnP :     151
           |! !  !|||||||||     !||||||||||||!::!  !:::!!|||! !    
           sSerAspValAsnGlyProArgAlaHisProLeuPheThrTyrLeuLysLysAlaT
 1395444 : GAGCGACGTCAACGGGCCGCGCGCGCACCCGCTCTTCACCTACCTGAAGAAAGCCA : 1395500

     152 : roLysGlyLysGlyIle :     156
           !!  !|||:!!  !:!:
           hrAlaGlyGlnProVal
 1395501 : CCGCGGGGCAGCCCGTG : 1395517

vulgar: SPP00000068_1.0 57 156 . scaffold_6:subseq(475515,1952387) 1395229 1395517 + 152 M 20 60 G 1 0 M 13 39 G 2 0 M 63 189
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome 1.4.0
##date 2009-02-27
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	gene	1395230	1395517	152	+	.	gene_id 1 ; sequence SPP00000068_1.0 ; gene_orientation .
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	cds	1395230	1395517	.	+	.	
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	exon	1395230	1395517	.	+	.	insertions 0 ; deletions 3
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	similarity	1395230	1395517	152	+	.	alignment_id 1 ; Query SPP00000068_1.0 ; Align 1395230 58 60 ; Align 1395290 79 39 ; Align 1395329 94 189
# --- END OF GFF DUMP ---
#

C4 Alignment:
------------
         Query: SPP00000068_1.0 # Protein # Glutathione peroxidase 4 (GPx4) # Pan troglodytes # Complete
        Target: scaffold_6:subseq(475515,1952387)
         Model: protein2genome
     Raw score: 128
   Query range: 50 -> 148
  Target range: 1948970 -> 1949258

      51 : GlyHisMetValAsnLeuAspLysTyrArgGlyPheValCysIleValThrAsnVa :      69
           |||  !  !|||!..|||...!  |||  !!.!   !.!  !:!::!!  !|||  
           GlyGlyAlaValThrLeuSerThrTyrAlaAlaArgAlaHisLeuIlePheAsnSe
 1948971 : GGCGGCGCGGTGACGCTGTCGACCTACGCGGCGAGGGCCCATTTGATCTTCAACTC : 1949025

      70 : lAlaSerGlnUnkGlyLysThrGluValAsnTyrThrGlnLeuValAspLeuHisA :      88
           !||||||:!!   |||! !|||  !   .!.  !  !   !!!  !!  |||!!.|
           rAlaSerLysCysGlyMetThrPro---GlnLeuGlyGlyPheGlnAlaLeuGlnA
 1949026 : GGCGTCCAAGTGCGGCATGACGCCG---CAGCTCGGTGGCTTTCAGGCGCTCCAGG : 1949079

      89 : laArgTyrAlaGluCysGlyLeuArgIleLeuAlaPheProCysAsnGlnPheGly :     106
           ||!:!!:!!.!!!:    !!|||!:!:!!|||||||||||||||:!!||||||   
           laLysPheGlyAsp---ArgLeuGlnValLeuAlaPheProCysAspGlnPhe---
 1949080 : CCAAGTTCGGCGAC---CGGCTCCAGGTCCTGGCCTTCCCCTGCGACCAGTTC--- : 1949130

     107 : LysGlnGluProGlySerAsnGluGluIleLysGluPheAlaAlaGly<->TyrAs :     124
           ||||||||||||||||||  !! !||||||  !! !|||  !|||! !   !:!..
           LysGlnGluProGlySerProAlaGluIleAlaAlaPheTyrAlaAspLysPheGl
 1949131 : AAGCAGGAGCCGGGCTCGCCCGCGGAGATCGCGGCGTTCTACGCGGACAAGTTCGG : 1949184

     125 : nValLysPheAspMetPheSerLysIleCysValAsnGlyAspAspAlaHisProL :     143
           !|||! !|||  !:!:|||:!!|||  !  !|||||||||   |||||||||||||
           yValThrPheProLeuPheAlaLysGlyAspValAsnGlyProAspAlaHisProL
 1949185 : CGTCACGTTCCCCCTCTTCGCCAAGGGCGACGTCAACGGCCCGGACGCGCACCCGC : 1949241

     144 : euTrpLysTrpMetLys :     148
           ||!::   !:::!!|||
           euPheAlaPheLeuLys
 1949242 : TCTTCGCCTTCCTGAAG : 1949258

vulgar: SPP00000068_1.0 50 148 . scaffold_6:subseq(475515,1952387) 1948970 1949258 + 128 M 27 81 G 1 0 M 14 42 G 1 0 M 12 36 G 1 0 M 16 48 G 0 3 M 26 78
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome 1.4.0
##date 2009-02-27
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	gene	1948971	1949258	128	+	.	gene_id 2 ; sequence SPP00000068_1.0 ; gene_orientation .
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	cds	1948971	1949258	.	+	.	
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	exon	1948971	1949258	.	+	.	insertions 3 ; deletions 3
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	similarity	1948971	1949258	128	+	.	alignment_id 2 ; Query SPP00000068_1.0 ; Align 1948971 51 81 ; Align 1949052 79 42 ; Align 1949094 94 36 ; Align 1949130 107 48 ; Align 1949181 123 78
# --- END OF GFF DUMP ---
#

C4 Alignment:
------------
         Query: SPP00000007_1.0 # Protein # Glutathione peroxidase 4 (GPx4) # Homo sapiens # Complete
        Target: scaffold_6:subseq(475515,1952387)
         Model: protein2genome
     Raw score: 152
   Query range: 57 -> 156
  Target range: 1395229 -> 1395517

      58 : LysTyrArgGlyPheValCysIleValThrAsnValAlaSerGlnUnkGlyLysTh :      76
           ::!|||||| !!  !!.!  !:!!|||..!|||..!||||||!::   |||   .!
           ArgTyrArgArgArgAlaHisLeuValValAsnThrAlaSerArgCysGlyPheAl
 1395230 : CGGTACCGGCGCCGCGCGCACCTCGTCGTCAACACGGCCAGCCGCTGCGGCTTCGC : 1395284

      77 : rGluValAsnTyrThrGlnLeuValAspLeuHisAlaArgTyrAlaGluCysGlyL :      95
           !  !   .!.  !  !:!!|||  !! !|||   ||||||||| !!      ||||
           aPro---GlnLeuArgGluLeuGlnAlaLeuTrpAlaArgTyrPro------GlyL
 1395285 : GCCG---CAGCTCCGCGAGCTGCAGGCCCTCTGGGCGCGCTACCCG------GGCC : 1395332

      96 : euArgIleLeuAlaPheProCysAsnGlnPheGlyLysGlnGluProGlySerAsn :     113
           ||  !:!!|||||||||||||||:!!|||||||||   |||||||||||||||   
           euAlaValLeuAlaPheProCysAspGlnPheGlyGlyGlnGluProGlySerAla
 1395333 : TCGCGGTCCTCGCCTTCCCCTGCGACCAGTTCGGCGGCCAGGAGCCGGGCTCGGCG : 1395386

     114 : GluGluIleLysGluPheAlaAlaGlyTyrAsnValLysPheAspMetPheSerLy :     132
           !  !!:|||:::!!:  !  !! ! !!|||..!||| ! |||  !:!:|||..!||
           GlyAspIleArgAspAlaTyrAspArgTyrGlyValAspPheProValPheGluLy
 1395387 : GGCGACATCCGCGACGCCTACGACCGCTACGGCGTCGATTTTCCCGTCTTCGAGAA : 1395443

     133 : sIleCysValAsnGlyAspAspAlaHisProLeuTrpLysTrpMetLysIleGlnP :     151
           |! !  !|||||||||     !||||||||||||!::!  !:::!!|||! !    
           sSerAspValAsnGlyProArgAlaHisProLeuPheThrTyrLeuLysLysAlaT
 1395444 : GAGCGACGTCAACGGGCCGCGCGCGCACCCGCTCTTCACCTACCTGAAGAAAGCCA : 1395500

     152 : roLysGlyLysGlyIle :     156
           !!  !|||:!!  !:!:
           hrAlaGlyGlnProVal
 1395501 : CCGCGGGGCAGCCCGTG : 1395517

vulgar: SPP00000007_1.0 57 156 . scaffold_6:subseq(475515,1952387) 1395229 1395517 + 152 M 20 60 G 1 0 M 13 39 G 2 0 M 63 189
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome 1.4.0
##date 2009-02-27
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	gene	1395230	1395517	152	+	.	gene_id 1 ; sequence SPP00000007_1.0 ; gene_orientation .
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	cds	1395230	1395517	.	+	.	
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	exon	1395230	1395517	.	+	.	insertions 0 ; deletions 3
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	similarity	1395230	1395517	152	+	.	alignment_id 1 ; Query SPP00000007_1.0 ; Align 1395230 58 60 ; Align 1395290 79 39 ; Align 1395329 94 189
# --- END OF GFF DUMP ---
#

C4 Alignment:
------------
         Query: SPP00000007_1.0 # Protein # Glutathione peroxidase 4 (GPx4) # Homo sapiens # Complete
        Target: scaffold_6:subseq(475515,1952387)
         Model: protein2genome
     Raw score: 128
   Query range: 50 -> 148
  Target range: 1948970 -> 1949258

      51 : GlyHisMetValAsnLeuAspLysTyrArgGlyPheValCysIleValThrAsnVa :      69
           |||  !  !|||!..|||...!  |||  !!.!   !.!  !:!::!!  !|||  
           GlyGlyAlaValThrLeuSerThrTyrAlaAlaArgAlaHisLeuIlePheAsnSe
 1948971 : GGCGGCGCGGTGACGCTGTCGACCTACGCGGCGAGGGCCCATTTGATCTTCAACTC : 1949025

      70 : lAlaSerGlnUnkGlyLysThrGluValAsnTyrThrGlnLeuValAspLeuHisA :      88
           !||||||:!!   |||! !|||  !   .!.  !  !   !!!  !!  |||!!.|
           rAlaSerLysCysGlyMetThrPro---GlnLeuGlyGlyPheGlnAlaLeuGlnA
 1949026 : GGCGTCCAAGTGCGGCATGACGCCG---CAGCTCGGTGGCTTTCAGGCGCTCCAGG : 1949079

      89 : laArgTyrAlaGluCysGlyLeuArgIleLeuAlaPheProCysAsnGlnPheGly :     106
           ||!:!!:!!.!!!:    !!|||!:!:!!|||||||||||||||:!!||||||   
           laLysPheGlyAsp---ArgLeuGlnValLeuAlaPheProCysAspGlnPhe---
 1949080 : CCAAGTTCGGCGAC---CGGCTCCAGGTCCTGGCCTTCCCCTGCGACCAGTTC--- : 1949130

     107 : LysGlnGluProGlySerAsnGluGluIleLysGluPheAlaAlaGly<->TyrAs :     124
           ||||||||||||||||||  !! !||||||  !! !|||  !|||! !   !:!..
           LysGlnGluProGlySerProAlaGluIleAlaAlaPheTyrAlaAspLysPheGl
 1949131 : AAGCAGGAGCCGGGCTCGCCCGCGGAGATCGCGGCGTTCTACGCGGACAAGTTCGG : 1949184

     125 : nValLysPheAspMetPheSerLysIleCysValAsnGlyAspAspAlaHisProL :     143
           !|||! !|||  !:!:|||:!!|||  !  !|||||||||   |||||||||||||
           yValThrPheProLeuPheAlaLysGlyAspValAsnGlyProAspAlaHisProL
 1949185 : CGTCACGTTCCCCCTCTTCGCCAAGGGCGACGTCAACGGCCCGGACGCGCACCCGC : 1949241

     144 : euTrpLysTrpMetLys :     148
           ||!::   !:::!!|||
           euPheAlaPheLeuLys
 1949242 : TCTTCGCCTTCCTGAAG : 1949258

vulgar: SPP00000007_1.0 50 148 . scaffold_6:subseq(475515,1952387) 1948970 1949258 + 128 M 27 81 G 1 0 M 14 42 G 1 0 M 12 36 G 1 0 M 16 48 G 0 3 M 26 78
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome 1.4.0
##date 2009-02-27
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	gene	1948971	1949258	128	+	.	gene_id 2 ; sequence SPP00000007_1.0 ; gene_orientation .
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	cds	1948971	1949258	.	+	.	
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	exon	1948971	1949258	.	+	.	insertions 3 ; deletions 3
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	similarity	1948971	1949258	128	+	.	alignment_id 2 ; Query SPP00000007_1.0 ; Align 1948971 51 81 ; Align 1949052 79 42 ; Align 1949094 94 36 ; Align 1949130 107 48 ; Align 1949181 123 78
# --- END OF GFF DUMP ---
#

C4 Alignment:
------------
         Query: SPP00000104_1.0 # Protein # Glutathione peroxidase 7 (GPx7) # Mus musculus # Complete
        Target: scaffold_6:subseq(475515,1952387)
         Model: protein2genome
     Raw score: 158
   Query range: 12 -> 135
  Target range: 1948904 -> 1949267

      13 : TrpAlaAlaAlaCysAlaGlnSerGluGlnAspPheTyrAspPheLysAlaValAs :      31
           !::|||||||||   |||   :::      ..!!:!  !||||||   !.!!.!  
           TyrAlaAlaAlaProAlaAlaAlaAlaAlaSerTyrSerAspPheAlaValAlaPr
 1948905 : TAcgccgcggcgccggcggccgcggccgcgAGCTACAGCGACTTCGCCGTGGCGCC : 1948959

      32 : nIle<->ArgGlyLysLeuValSerLeuGluLysTyrArgGlySerValSerLeuV :      49
           !:!!    !!|||     !|||!!!|||..!!  |||  !!.!!!!!.!  !|||:
           oLeuGlyGlyGlyGlyAlaValThrLeuSerThrTyrAlaAlaArgAlaHisLeuI
 1948960 : CCTCGGCGGCGGCGGCGCGGTGACGCTGTCGACCTACGCGGCGAGGGCCCATTTGA : 1949016

      50 : alValAsnValAlaSerGluCysGlyPheThrAspGlnAsnTyrArgAlaLeuGln :      67
           !! !!|||  !||||||:!!||||||.!.|||   |||     ! !!!.!!!!|||
           lePheAsnSerAlaSerLysCysGlyMetThrProGln---LeuGlyGlyPheGln
 1949017 : TCTTCAACTCGGCGTCCAAGTGCGGCATGACGCCGCAG---CTCGGTGGCTTTCAG : 1949067

      68 : GlnLeuGlnArgAspLeuGlyProHisHisPheAsnValLeuAlaPheProCysAs :      86
             !||||||  ! ! !!!|||    !!!...!!.!.||||||||||||||||||:!
           AlaLeuGlnAlaLysPheGly---AspArgLeuGlnValLeuAlaPheProCysAs
 1949068 : GCGCTCCAGGCCAAGTTCGGC---GACCGGCTCCAGGTCCTGGCCTTCCCCTGCGA : 1949121

      87 : nGlnPheGlyGlnGlnGluProAspThrAsnArgGluIleGluAsnPheAlaArgA :     105
           !||||||   :!!|||||||||! !:!!  !  !||||||! !   |||  !  ! 
           pGlnPhe---LysGlnGluProGlySerProAlaGluIleAlaAlaPheTyrAlaA
 1949122 : CCAGTTC---AAGCAGGAGCCGGGCTCGCCCGCGGAGATCGCGGCGTTCTACGCGG : 1949175

     106 : rgThrTyrSerValSerPheProMetPheSerLysIleAlaValThrGlyThrGly :     123
            !! !!:!.!!|||!!!||||||:!:|||:!!|||  !! !|||!.!||| !!! !
           spLysPheGlyValThrPheProLeuPheAlaLysGlyAspValAsnGlyProAsp
 1949176 : ACAAGTTCGGCGTCACGTTCCCCCTCTTCGCCAAGGGCGACGTCAACGGCCCGGAC : 1949229

     124 : AlaHisProAlaPheLysTyrLeuThrGlnThrSer :     135
           |||||||||  !|||   !:!|||! !:!!.!!!!!
           AlaHisProLeuPheAlaPheLeuLysGluAlaThr
 1949230 : GCGCACCCGCTCTTCGCCTTCCTGAAGGAGGCGACC : 1949267

vulgar: SPP00000104_1.0 12 135 . scaffold_6:subseq(475515,1952387) 1948904 1949267 + 158 M 20 60 G 0 3 M 29 87 G 1 0 M 12 36 G 1 0 M 13 39 G 1 0 M 46 138
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome 1.4.0
##date 2009-02-27
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	gene	1948905	1949267	158	+	.	gene_id 1 ; sequence SPP00000104_1.0 ; gene_orientation .
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	cds	1948905	1949267	.	+	.	
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	exon	1948905	1949267	.	+	.	insertions 3 ; deletions 3
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	similarity	1948905	1949267	158	+	.	alignment_id 1 ; Query SPP00000104_1.0 ; Align 1948905 13 60 ; Align 1948968 33 87 ; Align 1949055 63 36 ; Align 1949091 76 39 ; Align 1949130 90 138
# --- END OF GFF DUMP ---
#

C4 Alignment:
------------
         Query: SPP00000104_1.0 # Protein # Glutathione peroxidase 7 (GPx7) # Mus musculus # Complete
        Target: scaffold_6:subseq(475515,1952387)
         Model: protein2genome
     Raw score: 134
   Query range: 79 -> 142
  Target range: 1395337 -> 1395523

      80 : ValLeuAlaPheProCysAsnGlnPheGlyGlnGlnGluProAspThrAsnArgGl :      98
           ||||||||||||||||||:!!|||||||||   |||||||||! !:!!    !!!!
           ValLeuAlaPheProCysAspGlnPheGlyGlyGlnGluProGlySerAlaGlyAs
 1395338 : GTCCTCGCCTTCCCCTGCGACCAGTTCGGCGGCCAGGAGCCGGGCTCGGCGGGCGA : 1395392

      99 : uIleGluAsnPheAlaArgArgThrTyrSerValSerPheProMetPheSerLysI :     117
           :|||...:!!   |||  !  !  !|||.!!|||..!||||||:!:|||..!|||!
           pIleArgAsp---AlaTyrAspArgTyrGlyValAspPheProValPheGluLysS
 1395393 : CATCCGCGAC---GCCTACGACCGCTACGGCGTCGATTTTCCCGTCTTCGAGAAGA : 1395446

     118 : leAlaValThrGlyThrGlyAlaHisProAlaPheLysTyrLeuThrGlnThrSer :     135
            !! !|||!.!||| !! !!|||||||||  !|||!  ||||||! !:!!.!!!!!
           erAspValAsnGlyProArgAlaHisProLeuPheThrTyrLeuLysLysAlaThr
 1395447 : GCGACGTCAACGGGCCGCGCGCGCACCCGCTCTTCACCTACCTGAAGAAAGCCACC : 1395500

     136 : GlyLysGluProThrTrpAsn :     142
           !.!  !:!!|||..!  !|||
           AlaGlyGlnProValProAsn
 1395501 : GCGGGGCAGCCCGTGCCGAAC : 1395523

vulgar: SPP00000104_1.0 79 142 . scaffold_6:subseq(475515,1952387) 1395337 1395523 + 134 M 22 66 G 1 0 M 40 120
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome 1.4.0
##date 2009-02-27
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	gene	1395338	1395523	134	+	.	gene_id 2 ; sequence SPP00000104_1.0 ; gene_orientation .
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	cds	1395338	1395523	.	+	.	
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	exon	1395338	1395523	.	+	.	insertions 0 ; deletions 1
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	similarity	1395338	1395523	134	+	.	alignment_id 2 ; Query SPP00000104_1.0 ; Align 1395338 80 66 ; Align 1395404 103 120
# --- END OF GFF DUMP ---
#

C4 Alignment:
------------
         Query: SPP00000086_1.0 # Protein # Glutathione peroxidase 4 (GPx4) # Drosophila melanogaster # Complete
        Target: scaffold_6:subseq(475515,1952387)
         Model: protein2genome
     Raw score: 119
   Query range: 46 -> 205
  Target range: 1862345 -> 1949300

      47 : SerCysAlaAlaThrProMetAsnAlaIleSerSerAlaAlaGlnHisSerThrAl :      65
           ||||||||||||||||||   ..!! !   |||!!!|||:!!!:!||| !!|||  
           SerCysAlaAlaThrProProGlyGlu---SerThrAlaSerArgHisArgThrAr
 1862346 : AGCTGCGCCGCGACGCCGCCCGGCGAG---AGCACGGCGTCGCGGCATCGCACGAG : 1862397

      66 : aAlaAlaIleAspMetSerAlaAsnGlyAspTyrLysAsn  >>>> Target In :      79
           !:!!  !   ! !! !:!!|||:::  !  !   ||||||           86490
           gSerLeuSerGlyThrAlaAlaSerMetPheAlaLysAsn++              
 1862398 : ATCCTTGTCGGGCACGGCCGCGTCGATGTTCGCGAAGAACgt.............. : 1862441

      80 : tron 1 >>>>  AlaAlaSerIleTyrGluPheThrValLysAspThrHisGlyA :      93
            bp          |||||||||  !  !!!:|||.!!|||  !  !  !  !|||.
                      -+AlaAlaSerTyrSerAspPheAlaValAlaProLeuGlyGlyG
 1862442 : ...........cggccgcgAGCTACAGCGACTTCGCCGTGGCGCCCCTCGGCGGCG : 1948971

      94 : snAsp<->ValSerLeuGluLysTyrLysGlyLysValValLeuValValAsnIle :     110
           .!! !   |||!!!|||..!!  |||  !!.!!:!!.!  !|||:!! !!|||   
           lyGlyAlaValThrLeuSerThrTyrAlaAlaArgAlaHisLeuIlePheAsnSer
 1948972 : GCGGCGCGGTGACGCTGTCGACCTACGCGGCGAGGGCCCATTTGATCTTCAACTCG : 1949025

     111 : AlaSerLysCysGlyLeuThrLysAsnAsnTyrGluLysLeuThrAspLeuLysGl :     129
           |||||||||||||||:!!|||  !   .!.  !!     !!!  !!  |||:!!! 
           AlaSerLysCysGlyMetThrPro---GlnLeuGlyGlyPheGlnAlaLeuGlnAl
 1949026 : GCGTCCAAGTGCGGCATGACGCCG---CAGCTCGGTGGCTTTCAGGCGCTCCAGGC : 1949079

     130 : uLysTyrGlyGluArgGlyLeuValIleLeuAsnPheProCysAsnGlnPheGlyS :     148
            |||!:!|||!!:|||   |||  !:!!|||  !|||||||||:!!||||||   !
           aLysPheGlyAspArg---LeuGlnValLeuAlaPheProCysAspGlnPhe---L
 1949080 : CAAGTTCGGCGACCGG---CTCCAGGTCCTGGCCTTCCCCTGCGACCAGTTC---A : 1949130

     149 : erGlnMetProGluAlaAspGlyGluAlaMetValCysHisLeuArgAspSerLys :     166
           .!|||  !|||!  :!!  !!.!|||   !!:!.!...  !! !  !|||!.!   
           ysGlnGluProGlySerProAlaGlu---IleAlaAlaPheTyrAlaAspLysPhe
 1949131 : AGCAGGAGCCGGGCTCGCCCGCGGAG---ATCGCGGCGTTCTACGCGGACAAGTTC : 1949181

     167 : AlaAspIleGlyGluValPheAlaLysValAspValAsnGlyAspAsnAlaAlaPr :     185
           !.!! !!    !   :!!|||||||||! !||||||||||||   :!!|||  !||
           GlyValThrPheProLeuPheAlaLysGlyAspValAsnGlyProAspAlaHisPr
 1949182 : GGCGTCACGTTCCCCCTCTTCGCCAAGGGCGACGTCAACGGCCCGGACGCGCACCC : 1949238

     186 : oLeuTyrLysTyrLeuLysAlaLysGlnThrGlyThrLeuGlySerGlyIleLysT :     204
           ||||!:!   !:!||||||! !  !   ! !! !  !  !!.! !!! !     !|
           oLeuPheAlaPheLeuLysGluAlaThrLysAspGlnAlaAlaProValProProT
 1949239 : GCTCTTCGCCTTCCTGAAGGAGGCGACCAAGGACCAGGCCGCGCCCGTGCCGCCGT : 1949295

     205 : rpAsn :     205
           |||||
           rpAsn
 1949296 : GGAAC : 1949300

vulgar: SPP00000086_1.0 46 205 . scaffold_6:subseq(475515,1952387) 1862345 1949300 + 119 M 9 27 G 1 0 M 22 66 5 0 2 I 0 86486 3 0 2 M 16 48 G 0 3 M 24 72 G 1 0 M 15 45 G 1 0 M 11 33 G 1 0 M 9 27 G 1 0 M 48 144
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome 1.4.0
##date 2009-02-27
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	gene	1862346	1949300	119	+	.	gene_id 1 ; sequence SPP00000086_1.0 ; gene_orientation +
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	cds	1862346	1862438	.	+	.	
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	exon	1862346	1862438	.	+	.	insertions 0 ; deletions 1
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	splice5	1862439	1862440	.	+	.	intron_id 1 ; splice_site "GT"
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	intron	1862439	1948928	.	+	.	intron_id 1
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	splice3	1948927	1948928	.	+	.	intron_id 0 ; splice_site "cg"
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	cds	1948929	1949300	.	+	.	
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	exon	1948929	1949300	.	+	.	insertions 3 ; deletions 4
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	similarity	1862346	1949300	119	+	.	alignment_id 1 ; Query SPP00000086_1.0 ; Align 1862346 47 27 ; Align 1862373 57 66 ; Align 1948929 79 48 ; Align 1948980 95 72 ; Align 1949052 120 45 ; Align 1949097 136 33 ; Align 1949130 148 27 ; Align 1949157 158 144
# --- END OF GFF DUMP ---
#

C4 Alignment:
------------
         Query: SPP00000009_1.0 # Protein # Glutathione peroxidase 6 (GPx6) # Homo sapiens # Complete
        Target: scaffold_6:subseq(475515,1952387)
         Model: protein2genome
     Raw score: 149
   Query range: 56 -> 161
  Target range: 757897 -> 758212

     57 : LysGlnPheAlaGlyLysHisValLeuPheValAsnValAlaAlaTyrUnkGlyLeuA :     76
          :::!:!! !  !|||:!!  !|||||| ! ! !|||||||||::!  !   |||  !.
          ArgArgSerLeuGlyGlnValValLeuValGluAsnValAlaSerIle***GlyThrT
 757898 : CGCCGATCTTTAGGCCAGGTCGTGCTCGTGGAAAACGTCGCGAGTATCTGAGGCACGA : 757955

     77 : laAlaGln<->TyrProGluLeuAsnAlaLeuGlnGluGluLeuLysAsnPheGlyVa :     94
          !!!.!::!   !:! !!:!!:!!|||! !|||   |||:!!!!!   ..!     ! !
          hrValArgAspPheThrGlnMetAsnAspLeuThrGluLysPheAlaGly---LysPh
 757956 : CGGTCAGGGACTTCACGCAGATGAACGACCTGACCGAGAAATTCGCCGGC---AAGTT : 758009

     95 : lIleValLeuAlaPheProCysAsnGlnPheGlyLysGlnGluProGlyThrAsnSer :    113
          !!    !|||!.!||||||   ||||||||||||||||||  !  !! !! !:!!!!!
          eThrCysLeuGlyPheProThrAsnGlnPheGlyLysGlnThrAsnGluLysAspTrp
 758010 : CACGTGCCTCGGCTTCCCGACGAACCAGTTCGGGAAGCAGACGAACGAGAAGGACTGG : 758066

    114 : GluIleLeuLeuGlyLeuLysTyrValCysProGlySerGlyPheValProSerPheG :    133
          |||:!:|||! !  !|||  !:!!||| !!||||||.!!||||||||||||!:!|||!
          GluLeuLeuProMetLeuAlaHisValArgProGlyGlyGlyPheValProAsnPheP
 758067 : GAGCTGCTGCCCATGCTCGCGCACGTGCGCCCCGGCGGCGGCTTCGTGCCCAACTTCC : 758126

    134 : lnLeuPheGluLysGlyAspValAsnGlyGluLysGluGlnLysValPheThrPheLe :    152
            :!!|||   |||  !!!:!.!|||||||||   ! !..! ! :!!|||! !|||||
          roIlePheThrLysThrGluAlaAsnGlyGluGlyAlaSerAspLeuPheLysPheLe
 758127 : CCATCTTCACCAAGACCGAGGCCAACGGCGAGGGCGCGTCGGACCTGTTCAAGTTCCT : 758183

    153 : uLysAsnSerCysProProThrSerAsp :    161
          |::!:::|||  !  ! !! !!||||||
          uArgSerSerLeuGlyAlaProSerAsp
 758184 : CCGGTCGTCCCTCGGCGCGCCGAGCGAC : 758212

vulgar: SPP00000009_1.0 56 161 . scaffold_6:subseq(475515,1952387) 757897 758212 + 149 M 22 66 G 0 3 M 13 39 G 1 0 M 69 207
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome 1.4.0
##date 2009-02-27
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	gene	757898	758212	149	+	.	gene_id 1 ; sequence SPP00000009_1.0 ; gene_orientation .
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	cds	757898	758212	.	+	.	
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	exon	757898	758212	.	+	.	insertions 3 ; deletions 1
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	similarity	757898	758212	149	+	.	alignment_id 1 ; Query SPP00000009_1.0 ; Align 757898 57 66 ; Align 757967 79 39 ; Align 758006 93 207
# --- END OF GFF DUMP ---
#

C4 Alignment:
------------
         Query: SPP00000009_1.0 # Protein # Glutathione peroxidase 6 (GPx6) # Homo sapiens # Complete
        Target: scaffold_6:subseq(475515,1952387)
         Model: protein2genome
     Raw score: 101
   Query range: 38 -> 115
  Target range: 1395172 -> 1395397

      39 : ThrIleTyrGluTyrGlyAlaLeuThrLeuAsnGlyGluGluTyrIleGlnPheLy :      57
           |||  !!::!!:!:!! !  !:!! !!|||..!|||!  ! !  !:!:  !     
           ThrTyrTrpAspPheGluLeuValProLeuGlyGlyGlyAlaProLeuThrProAl
 1395173 : ACGTACTGGGACTTCGAGCTCGTGCCCCTCGGCGGCGGCGCGCCCCTGACGCCGGC : 1395227

      58 : sGlnPheAlaGlyLysHisValLeuPheValAsnValAlaAlaTyrUnkGlyLeuA :      76
           !!:!!:!  ! !!:::     !||| !!||||||..!|||::!  !   |||!!!|
           aArgTyrArgArgArgAlaHisLeuValValAsnThrAlaSerArgCysGlyPheA
 1395228 : GCGGTACCGGCGCCGCGCGCACCTCGTCGTCAACACGGCCAGCCGCTGCGGCTTCG : 1395284

      77 : laAlaGlnTyrProGluLeuAsnAlaLeuGlnGluGluLeuLysAsnPheGlyVal :      94
           || !!|||  !! !||||||.!.||||||  !! !...! !  !      |||:!!
           laProGlnLeuArgGluLeuGlnAlaLeuTrpAlaArgTyrPro------GlyLeu
 1395285 : CGCCGCAGCTCCGCGAGCTGCAGGCCCTCTGGGCGCGCTACCCG------GGCCTC : 1395332

      95 : IleValLeuAlaPheProCysAsnGlnPheGlyLysGlnGluProGlyThrAsnSe :     113
              ||||||||||||||||||:!!|||||||||   ||||||||||||:!!   .!
           AlaValLeuAlaPheProCysAspGlnPheGlyGlyGlnGluProGlySerAlaGl
 1395333 : GCGGTCCTCGCCTTCCCCTGCGACCAGTTCGGCGGCCAGGAGCCGGGCTCGGCGGG : 1395389

     114 : rGluIle :     115
           !!!:|||
           yAspIle
 1395390 : CGACATC : 1395397

vulgar: SPP00000009_1.0 38 115 . scaffold_6:subseq(475515,1952387) 1395172 1395397 + 101 M 52 156 G 2 0 M 23 69
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome 1.4.0
##date 2009-02-27
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	gene	1395173	1395397	101	+	.	gene_id 2 ; sequence SPP00000009_1.0 ; gene_orientation .
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	cds	1395173	1395397	.	+	.	
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	exon	1395173	1395397	.	+	.	insertions 0 ; deletions 2
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	similarity	1395173	1395397	101	+	.	alignment_id 2 ; Query SPP00000009_1.0 ; Align 1395173 39 156 ; Align 1395329 93 69
# --- END OF GFF DUMP ---
#

C4 Alignment:
------------
         Query: SPP00000095_1.0 # Protein # Glutathione peroxidase 3 (GPx3) # Saccharomyces cerevisiae # Complete
        Target: scaffold_6:subseq(475515,1952387)
         Model: protein2genome
     Raw score: 206
   Query range: 13 -> 116
  Target range: 1395208 -> 1395508

      14 : GlyGlnProPheProPheAspGlnLeuLysGlyLysValValLeuIleValAsnVa :      32
           |||  !|||.!. !!   !  !:!! !::! !!:::!.!  !|||:!!||||||..
           GlyAlaProLeuThrProAlaArgTyrArgArgArgAlaHisLeuValValAsnTh
 1395209 : GGCGCGCCCCTGACGCCGGCGCGGTACCGGCGCCGCGCGCACCTCGTCGTCAACAC : 1395263

      33 : lAlaSerLysCysGlyPheThrProGlnTyrLysGluLeuGluAlaLeuTyrLysA :      51
           !||||||:::|||||||||.!!||||||  !:::||||||:!!||||||!::  !|
           rAlaSerArgCysGlyPheAlaProGlnLeuArgGluLeuGlnAlaLeuTrpAlaA
 1395264 : GGCCAGCCGCTGCGGCTTCGCGCCGCAGCTCCGCGAGCTGCAGGCCCTCTGGGCGC : 1395320

      52 : rgTyrLysAspGluGlyPheThrIleIleGlyPheProCysAsnGlnPheGlyHis :      69
           |||||        !|||.!!.!!:!!:!!!.!|||||||||:!!|||||||||  !
           rgTyr------ProGlyLeuAlaValLeuAlaPheProCysAspGlnPheGlyGly
 1395321 : GCTAC------CCGGGCCTCGCGGTCCTCGCCTTCCCCTGCGACCAGTTCGGCGGC : 1395368

      70 : GlnGluProGlySerAspGluGluIleAlaGlnPheCysGlnLeuAsnTyrGlyVa :      88
           |||||||||||||||!  !  !!:|||  !.!.  !! !.!.   ..!||||||||
           GlnGluProGlySerAlaGlyAspIleArgAspAlaTyrAsp---ArgTyrGlyVa
 1395369 : CAGGAGCCGGGCTCGGCGGGCGACATCCGCGACGCCTACGAC---CGCTACGGCGT : 1395422

      89 : lThrPheProIleMetLysLysIleAspValAsnGlyGlyAsnGluAspProValT :     107
           |  !||||||:!!.!.:!!|||! !||||||||||||  !..!! ! !!|||:!!!
           lAspPheProValPheGluLysSerAspValAsnGlyProArgAlaHisProLeuP
 1395423 : CGATTTTCCCGTCTTCGAGAAGAGCGACGTCAACGGGCCGCGCGCGCACCCGCTCT : 1395479

     108 : yrLysPheLeuLysSerGlnLysSerGly :     116
           :!!  !:!||||||!.!   !  :!!|||
           heThrTyrLeuLysLysAlaThrAlaGly
 1395480 : TCACCTACCTGAAGAAAGCCACCGCGGGG : 1395508

vulgar: SPP00000095_1.0 13 116 . scaffold_6:subseq(475515,1952387) 1395208 1395508 + 206 M 39 117 G 2 0 M 29 87 G 1 0 M 32 96
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome 1.4.0
##date 2009-02-27
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	gene	1395209	1395508	206	+	.	gene_id 1 ; sequence SPP00000095_1.0 ; gene_orientation .
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	cds	1395209	1395508	.	+	.	
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	exon	1395209	1395508	.	+	.	insertions 0 ; deletions 3
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	similarity	1395209	1395508	206	+	.	alignment_id 1 ; Query SPP00000095_1.0 ; Align 1395209 14 117 ; Align 1395326 55 87 ; Align 1395413 85 96
# --- END OF GFF DUMP ---
#

C4 Alignment:
------------
         Query: SPP00000095_1.0 # Protein # Glutathione peroxidase 3 (GPx3) # Saccharomyces cerevisiae # Complete
        Target: scaffold_6:subseq(475515,1952387)
         Model: protein2genome
     Raw score: 182
   Query range: 27 -> 111
  Target range: 1949012 -> 1949258

      28 : LeuIleValAsnValAlaSerLysCysGlyPheThrProGlnTyrLysGluLeuGl :      46
           |||||| !!|||  !|||||||||||||||.!.|||||||||  !   !  !!!:!
           LeuIlePheAsnSerAlaSerLysCysGlyMetThrProGlnLeuGlyGlyPheGl
 1949013 : TTGATCTTCAACTCGGCGTCCAAGTGCGGCATGACGCCGCAGCTCGGTGGCTTTCA : 1949067

      47 : uAlaLeuTyrLysArgTyrLysAspGluGlyPheThrIleIleGlyPheProCysA :      65
           !|||||| !    !:!!:!   |||..!   .!!  !:!!:!:!.!|||||||||:
           nAlaLeuGlnAlaLysPheGlyAspArg---LeuGlnValLeuAlaPheProCysA
 1949068 : GGCGCTCCAGGCCAAGTTCGGCGACCGG---CTCCAGGTCCTGGCCTTCCCCTGCG : 1949121

      66 : snGlnPheGlyHisGlnGluProGlySerAspGluGluIleAlaGlnPheCysGln :      83
           !!||||||    ! |||||||||||||||  !! !|||||||||  !|||! !  !
           spGlnPhe---LysGlnGluProGlySerProAlaGluIleAlaAlaPheTyrAla
 1949122 : ACCAGTTC---AAGCAGGAGCCGGGCTCGCCCGCGGAGATCGCGGCGTTCTACGCG : 1949172

      84 : LeuAsnTyrGlyValThrPheProIleMetLysLysIleAspValAsnGlyGlyAs :     102
             !!!.!:!|||||||||||||||:!!.!.   |||  !||||||||||||  !:!
           AspLysPheGlyValThrPheProLeuPheAlaLysGlyAspValAsnGlyProAs
 1949173 : GACAAGTTCGGCGTCACGTTCCCCCTCTTCGCCAAGGGCGACGTCAACGGCCCGGA : 1949229

     103 : nGluAspProValTyrLysPheLeuLys :     111
           !! ! !!|||:!!!:!   |||||||||
           pAlaHisProLeuPheAlaPheLeuLys
 1949230 : CGCGCACCCGCTCTTCGCCTTCCTGAAG : 1949258

vulgar: SPP00000095_1.0 27 111 . scaffold_6:subseq(475515,1952387) 1949012 1949258 + 182 M 28 84 G 1 0 M 11 33 G 1 0 M 43 129
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome 1.4.0
##date 2009-02-27
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	gene	1949013	1949258	182	+	.	gene_id 2 ; sequence SPP00000095_1.0 ; gene_orientation .
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	cds	1949013	1949258	.	+	.	
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	exon	1949013	1949258	.	+	.	insertions 0 ; deletions 2
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	similarity	1949013	1949258	182	+	.	alignment_id 2 ; Query SPP00000095_1.0 ; Align 1949013 28 84 ; Align 1949097 57 33 ; Align 1949130 69 129
# --- END OF GFF DUMP ---
#

C4 Alignment:
------------
         Query: SPP00000082_1.0 # Protein # Glutathione peroxidase 1 (GPx1) # Caenorhabditis elegans # Complete
        Target: scaffold_6:subseq(475515,1952387)
         Model: protein2genome
     Raw score: 158
   Query range: 11 -> 126
  Target range: 1948964 -> 1949300

      12 : AlaAsnGlyAspAspValSerLeuSerAspTyrLysGlyLysValLeuIleIleVa :      30
           !.!..!|||! !!  |||!!!||||||  !|||  !!.!!:!!.!! !:!:||| !
           GlyGlyGlyGlyAlaValThrLeuSerThrTyrAlaAlaArgAlaHisLeuIlePh
 1948965 : GGCGGCGGCGGCGCGGTGACGCTGTCGACCTACGCGGCGAGGGCCCATTTGATCTT : 1949019

      31 : lAsnValAlaSerGlnCysGlyLeuThrAsnLysAsnTyrThrGlnLeuLysGluL :      49
           !|||  !||||||:!!||||||:!!|||   :!!        !     !   :!! 
           eAsnSerAlaSerLysCysGlyMetThrProGln------LeuGlyGlyPheGlnA
 1949020 : CAACTCGGCGTCCAAGTGCGGCATGACGCCGCAG------CTCGGTGGCTTTCAGG : 1949070

      50 : euLeuAspValTyrLysLysAspGlyLeuGluValLeuAlaPheProCysAsnGln :      67
            !|||.!.!.! !       ||| !!|||:!!||||||||||||||||||:!!|||
           laLeuGlnAlaLysPheGlyAspArgLeuGlnValLeuAlaPheProCysAspGln
 1949071 : CGCTCCAGGCCAAGTTCGGCGACCGGCTCCAGGTCCTGGCCTTCCCCTGCGACCAG : 1949124

      68 : PheAlaGlyGlnGluProSerCysGluIleAspIleGlnAlaPheValAlaAspLy :      86
           |||  !   |||||||||.!!!        !!:|||  !||||||  !||||||||
           PheLys---GlnGluProGlySerProAlaGluIleAlaAlaPheTyrAlaAspLy
 1949125 : TTCAAG---CAGGAGCCGGGCTCGCCCGCGGAGATCGCGGCGTTCTACGCGGACAA : 1949178

      87 : sPheLysPheGluProThrLeuPheGlnLysIleAspValAsnGlyAspLysGlnS :     105
           ||||    !!  !  ! !!||||||   |||  !||||||||||||    !   ! 
           sPheGlyValThrPheProLeuPheAlaLysGlyAspValAsnGlyProAspAlaH
 1949179 : GTTCGGCGTCACGTTCCCCCTCTTCGCCAAGGGCGACGTCAACGGCCCGGACGCGC : 1949235

     106 : erProLeuPheLysPheLeuLysAsnGluLysGlyGlyPheMetPheAspAlaIle :     123
            !|||||||||   |||||||||.!.! !!    !! !           !!.!   
           isProLeuPheAlaPheLeuLysGluAlaThrLysAspGlnAlaAlaProValPro
 1949236 : ACCCGCTCTTCGCCTTCCTGAAGGAGGCGACCAAGGACCAGGCCGCGCCCGTGCCG : 1949289

     124 : LysTrpAsn :     126
             !||||||
           ProTrpAsn
 1949290 : CCGTGGAAC : 1949300

vulgar: SPP00000082_1.0 11 126 . scaffold_6:subseq(475515,1952387) 1948964 1949300 + 158 M 30 90 G 2 0 M 26 78 G 1 0 M 56 168
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome 1.4.0
##date 2009-02-27
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	gene	1948965	1949300	158	+	.	gene_id 1 ; sequence SPP00000082_1.0 ; gene_orientation .
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	cds	1948965	1949300	.	+	.	
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	exon	1948965	1949300	.	+	.	insertions 0 ; deletions 3
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	similarity	1948965	1949300	158	+	.	alignment_id 1 ; Query SPP00000082_1.0 ; Align 1948965 12 90 ; Align 1949055 44 78 ; Align 1949133 71 168
# --- END OF GFF DUMP ---
#

C4 Alignment:
------------
         Query: SPP00000082_1.0 # Protein # Glutathione peroxidase 1 (GPx1) # Caenorhabditis elegans # Complete
        Target: scaffold_6:subseq(475515,1952387)
         Model: protein2genome
     Raw score: 139
   Query range: 8 -> 117
  Target range: 1395193 -> 1395508

       9 : ValLysAsnAlaAsnGlyAspAspValSerLeuSerAspTyrLysGlyLysValLe :      27
           |||     !!.!..!|||!    !:!!!!!! !:!!   |||::! !!:::!.!! 
           ValProLeuGlyGlyGlyAlaProLeuThrProAlaArgTyrArgArgArgAlaHi
 1395194 : GTGCCCCTCGGCGGCGGCGCGCCCCTGACGCCGGCGCGGTACCGGCGCCGCGCGCA : 1395248

      28 : uIleIleValAsnValAlaSerGlnCysGlyLeuThrAsnLysAsnTyrThrGlnL :      46
           !:!!:!!||||||..!||||||!::||||||!!!.!!     !.!.  !  !:!!|
           sLeuValValAsnThrAlaSerArgCysGlyPheAla---ProGlnLeuArgGluL
 1395249 : CCTCGTCGTCAACACGGCCAGCCGCTGCGGCTTCGCG---CCGCAGCTCCGCGAGC : 1395302

      47 : euLysGluLeuLeuAspValTyrLysLysAspGlyLeuGluValLeuAlaPhePro :      64
           ||:!!!  |||! !!    !|||         ||||||! !|||||||||||||||
           euGlnAlaLeuTrpAlaArgTyr------ProGlyLeuAlaValLeuAlaPhePro
 1395303 : TGCAGGCCCTCTGGGCGCGCTAC------CCGGGCCTCGCGGTCCTCGCCTTCCCC : 1395350

      65 : CysAsnGlnPheAlaGlyGlnGluProSerCysGluIleAspIleGlnAlaPheVa :      83
           |||:!!||||||!.!||||||||||||.!!!  ! !  !||||||!::! !   !.
           CysAspGlnPheGlyGlyGlnGluProGlySerAlaGlyAspIleArgAsp---Al
 1395351 : TGCGACCAGTTCGGCGGCCAGGAGCCGGGCTCGGCGGGCGACATCCGCGAC---GC : 1395404

      84 : lAlaAspLysPheLysPheGluProThrLeuPheGlnLysIleAspValAsnGlyA :     102
           !  !|||:::!:!    !!!!:  ! !!:!!|||:!!|||! !|||||||||||| 
           aTyrAspArgTyrGlyValAspPheProValPheGluLysSerAspValAsnGlyP
 1395405 : CTACGACCGCTACGGCGTCGATTTTCCCGTCTTCGAGAAGAGCGACGTCAACGGGC : 1395461

     103 : spLysGlnSerProLeuPheLysPheLeuLysAsnGluLysGlyGly :     117
             :::  !  !|||||||||!  !:!||||||!!.!  !  !.!|||
           roArgAlaHisProLeuPheThrTyrLeuLysLysAlaThrAlaGly
 1395462 : CGCGCGCGCACCCGCTCTTCACCTACCTGAAGAAAGCCACCGCGGGG : 1395508

vulgar: SPP00000082_1.0 8 117 . scaffold_6:subseq(475515,1952387) 1395193 1395508 + 139 M 31 93 G 1 0 M 13 39 G 2 0 M 26 78 G 1 0 M 35 105
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome 1.4.0
##date 2009-02-27
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	gene	1395194	1395508	139	+	.	gene_id 2 ; sequence SPP00000082_1.0 ; gene_orientation .
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	cds	1395194	1395508	.	+	.	
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	exon	1395194	1395508	.	+	.	insertions 0 ; deletions 4
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	similarity	1395194	1395508	139	+	.	alignment_id 2 ; Query SPP00000082_1.0 ; Align 1395194 9 93 ; Align 1395287 41 39 ; Align 1395326 56 78 ; Align 1395404 83 105
# --- END OF GFF DUMP ---
#

C4 Alignment:
------------
         Query: SPP00000093_1.0 # Protein # Glutathione peroxidase 1 (GPx1) # Saccharomyces cerevisiae # Complete
        Target: scaffold_6:subseq(475515,1952387)
         Model: protein2genome
     Raw score: 139
   Query range: 12 -> 118
  Target range: 1948967 -> 1949279

      13 : AsnGlyAsnProPheProPheAsnSerLeuArgAsnLysValValLeuIleValAs :      31
           ..!|||..! !! !  !!.!.:::!!!! !  !   !:!!.!  !|||||| !!||
           GlyGlyGlyAlaValThrLeuSerThrTyrAlaAlaArgAlaHisLeuIlePheAs
 1948968 : GGCGGCGGCGCGGTGACGCTGTCGACCTACGCGGCGAGGGCCCATTTGATCTTCAA : 1949022

      32 : nValAlaSerHisCysAlaPheThrProGlnTyrLysGluLeuGluTyrLeuTyrG :      50
           |  !|||||| ! |||!.!.!.|||||||||  !   !  !!!:!!   ||| ! !
           nSerAlaSerLysCysGlyMetThrProGlnLeuGlyGlyPheGlnAlaLeuGlnA
 1949023 : CTCGGCGTCCAAGTGCGGCATGACGCCGCAGCTCGGTGGCTTTCAGGCGCTCCAGG : 1949079

      51 : luLysTyrLysSerHisGlyLeuValIleValAlaPheProCysGlyGlnPheGly :      68
             |||!:!   ..!!..   |||  !:!!:!!||||||||||||! !||||||   
           laLysPheGlyAspArg---LeuGlnValLeuAlaPheProCysAspGlnPhe---
 1949080 : CCAAGTTCGGCGACCGG---CTCCAGGTCCTGGCCTTCCCCTGCGACCAGTTC--- : 1949130

      69 : AsnGlnGluPheGluLysAspLysGluIleAsnLysPheCysGlnAspLysTyrGl :      87
           !!.||||||   !  ..!  !  !||||||     !|||! !  !||||||!:!||
           LysGlnGluProGlySerProAlaGluIleAlaAlaPheTyrAlaAspLysPheGl
 1949131 : AAGCAGGAGCCGGGCTCGCCCGCGGAGATCGCGGCGTTCTACGCGGACAAGTTCGG : 1949184

      88 : yValThrPheProIleLeuHisLysIleArgCysAsnGlyGlnLysGlnAspProV :     106
           |||||||||||||:!!!!!  !|||  !  !  !||||||! ! !   ! !!|||:
           yValThrPheProLeuPheAlaLysGlyAspValAsnGlyProAspAlaHisProL
 1949185 : CGTCACGTTCCCCCTCTTCGCCAAGGGCGACGTCAACGGCCCGGACGCGCACCCGC : 1949241

     107 : alTyrLysPheLeuLysAsnSerValSerGlyLysSer :     118
           !!!:!   |||||||||.!.:!!..!!.!! !:!!:!!
           euPheAlaPheLeuLysGluAlaThrLysAspGlnAla
 1949242 : TCTTCGCCTTCCTGAAGGAGGCGACCAAGGACCAGGCC : 1949279

vulgar: SPP00000093_1.0 12 118 . scaffold_6:subseq(475515,1952387) 1948967 1949279 + 139 M 43 129 G 1 0 M 11 33 G 1 0 M 50 150
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome 1.4.0
##date 2009-02-27
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	gene	1948968	1949279	139	+	.	gene_id 1 ; sequence SPP00000093_1.0 ; gene_orientation .
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	cds	1948968	1949279	.	+	.	
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	exon	1948968	1949279	.	+	.	insertions 0 ; deletions 2
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	similarity	1948968	1949279	139	+	.	alignment_id 1 ; Query SPP00000093_1.0 ; Align 1948968 13 129 ; Align 1949097 57 33 ; Align 1949130 69 150
# --- END OF GFF DUMP ---
#

C4 Alignment:
------------
         Query: SPP00000094_1.0 # Protein # Glutathione peroxidase 2 (GPx2) # Saccharomyces cerevisiae # Complete
        Target: scaffold_6:subseq(475515,1952387)
         Model: protein2genome
     Raw score: 202
   Query range: 28 -> 117
  Target range: 1395250 -> 1395508

      29 : LeuIleValAsnValAlaSerLysCysGlyPheThrProGlnTyrLysGluLeuGl :      47
           |||:!!||||||..!||||||:::|||||||||.!!||||||  !:::||||||:!
           LeuValValAsnThrAlaSerArgCysGlyPheAlaProGlnLeuArgGluLeuGl
 1395251 : CTCGTCGTCAACACGGCCAGCCGCTGCGGCTTCGCGCCGCAGCTCCGCGAGCTGCA : 1395305

      48 : uGluLeuTyrLysLysTyrGlnAspLysGlyPheValIleLeuGlyPheProCysA :      66
           !!  |||!::  !:::|||        !|||.!!!.!:!!|||!.!|||||||||:
           nAlaLeuTrpAlaArgTyr------ProGlyLeuAlaValLeuAlaPheProCysA
 1395306 : GGCCCTCTGGGCGCGCTAC------CCGGGCCTCGCGGTCCTCGCCTTCCCCTGCG : 1395356

      67 : snGlnPheGlyLysGlnGluProGlySerAspGluGlnIleThrGluPheCysGln :      84
           !!|||||||||   |||||||||||||||!  !  .!.|||  !!!:  !! !.!.
           spGlnPheGlyGlyGlnGluProGlySerAlaGlyAspIleArgAspAlaTyrAsp
 1395357 : ACCAGTTCGGCGGCCAGGAGCCGGGCTCGGCGGGCGACATCCGCGACGCCTACGAC : 1395410

      85 : LeuAsnTyrGlyValThrPheProIleMetLysLysIleAspValAsnGlySerAs :     103
              ..!|||||||||  !||||||:!!.!.:!!|||! !|||||||||||| !!..
           ---ArgTyrGlyValAspPheProValPheGluLysSerAspValAsnGlyProAr
 1395411 : ---CGCTACGGCGTCGATTTTCCCGTCTTCGAGAAGAGCGACGTCAACGGGCCGCG : 1395464

     104 : nAlaAspSerValTyrAsnTyrLeuLysSerGlnLysAlaGly :     117
           !||| !! !!:!!!:!!.!|||||||||!.!   !  ||||||
           gAlaHisProLeuPheThrTyrLeuLysLysAlaThrAlaGly
 1395465 : CGCGCACCCGCTCTTCACCTACCTGAAGAAAGCCACCGCGGGG : 1395508

vulgar: SPP00000094_1.0 28 117 . scaffold_6:subseq(475515,1952387) 1395250 1395508 + 202 M 25 75 G 2 0 M 29 87 G 1 0 M 32 96
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome 1.4.0
##date 2009-02-27
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	gene	1395251	1395508	202	+	.	gene_id 1 ; sequence SPP00000094_1.0 ; gene_orientation .
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	cds	1395251	1395508	.	+	.	
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	exon	1395251	1395508	.	+	.	insertions 0 ; deletions 3
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	similarity	1395251	1395508	202	+	.	alignment_id 1 ; Query SPP00000094_1.0 ; Align 1395251 29 75 ; Align 1395326 56 87 ; Align 1395413 86 96
# --- END OF GFF DUMP ---
#

C4 Alignment:
------------
         Query: SPP00000094_1.0 # Protein # Glutathione peroxidase 2 (GPx2) # Saccharomyces cerevisiae # Complete
        Target: scaffold_6:subseq(475515,1952387)
         Model: protein2genome
     Raw score: 176
   Query range: 28 -> 112
  Target range: 1949012 -> 1949258

      29 : LeuIleValAsnValAlaSerLysCysGlyPheThrProGlnTyrLysGluLeuGl :      47
           |||||| !!|||  !|||||||||||||||.!.|||||||||  !   !  !!!:!
           LeuIlePheAsnSerAlaSerLysCysGlyMetThrProGlnLeuGlyGlyPheGl
 1949013 : TTGATCTTCAACTCGGCGTCCAAGTGCGGCATGACGCCGCAGCTCGGTGGCTTTCA : 1949067

      48 : uGluLeuTyrLysLysTyrGlnAspLysGlyPheValIleLeuGlyPheProCysA :      66
           !! !||| !    |||!:!   |||::!   .!!  !:!!|||!.!|||||||||:
           nAlaLeuGlnAlaLysPheGlyAspArg---LeuGlnValLeuAlaPheProCysA
 1949068 : GGCGCTCCAGGCCAAGTTCGGCGACCGG---CTCCAGGTCCTGGCCTTCCCCTGCG : 1949121

      67 : snGlnPheGlyLysGlnGluProGlySerAspGluGlnIleThrGluPheCysGln :      84
           !!||||||   ||||||||||||||||||  !! !:!!|||.!!! !|||! !  !
           spGlnPhe---LysGlnGluProGlySerProAlaGluIleAlaAlaPheTyrAla
 1949122 : ACCAGTTC---AAGCAGGAGCCGGGCTCGCCCGCGGAGATCGCGGCGTTCTACGCG : 1949172

      85 : LeuAsnTyrGlyValThrPheProIleMetLysLysIleAspValAsnGlySerAs :     103
             !!!.!:!|||||||||||||||:!!.!.   |||  !|||||||||||| !!:!
           AspLysPheGlyValThrPheProLeuPheAlaLysGlyAspValAsnGlyProAs
 1949173 : GACAAGTTCGGCGTCACGTTCCCCCTCTTCGCCAAGGGCGACGTCAACGGCCCGGA : 1949229

     104 : nAlaAspSerValTyrAsnTyrLeuLys :     112
           !||| !! !!:!!!:!  !!:!||||||
           pAlaHisProLeuPheAlaPheLeuLys
 1949230 : CGCGCACCCGCTCTTCGCCTTCCTGAAG : 1949258

vulgar: SPP00000094_1.0 28 112 . scaffold_6:subseq(475515,1952387) 1949012 1949258 + 176 M 28 84 G 1 0 M 11 33 G 1 0 M 43 129
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome 1.4.0
##date 2009-02-27
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	gene	1949013	1949258	176	+	.	gene_id 2 ; sequence SPP00000094_1.0 ; gene_orientation .
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	cds	1949013	1949258	.	+	.	
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	exon	1949013	1949258	.	+	.	insertions 0 ; deletions 2
scaffold_6:subseq(475515,1952387)	exonerate:protein2genome	similarity	1949013	1949258	176	+	.	alignment_id 2 ; Query SPP00000094_1.0 ; Align 1949013 29 84 ; Align 1949097 58 33 ; Align 1949130 70 129
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis
