Command line: [exonerate -m p2g --showtargetgff -q ./Seq.aa.proteines/DI/danio.fa -t ProtDNASeq/DI_scaffold8_seqDNA.fa]
Hostname: [localhost]

C4 Alignment:
------------
         Query: gi|29165348|gb|AAO65268.1| iodothyronine deiodinase type I Deio1 [Danio rerio]
        Target: scaffold_8:subseq(1754109,6497) [revcomp]
         Model: protein2genome
     Raw score: 128
   Query range: 94 -> 173
  Target range: 3494 -> 3260

   95 : GlyHisAlaAlaProAspSerAlaLeuIleThrLeuAspArgGlnLysThrSerValHisAr :  115
        |||   ||||||||||||   ||||||     !|||||| !!..!|||||||||:!!! !  
        GlyAspAlaAlaProAspValAlaLeuTrpArgLeuAspGlySerLysThrSerLeuLeuAl
 3494 : ggcgacgcggcgccggacgtcgcgCTCTGGCGCCTCGACGGCTCGAAGACGTCGCTCCTCGC : 3434

  116 : gPheLeuLysGlyAsnArgProLeuValLeuSerPheGlySerCysThrUnkProProPheL :  136
        !  !! ! ! !.!  !!:!|||||||||:!!  !   ||||||   :!!   |||||||||!
        aGlyArgAspAlaAlaLysProLeuValValValAlaGlySerValSer***ProProPheA
 3433 : GGGCCGCGACGCCGCCAAGCCGCTCGTCGTCGTCGCGGGCTCCGTGTCGTGACCGCCGTTCC : 3371

  137 : euTyrLysLeuAspGluPheLysGlnLeuValLysAspPheSerAsnValAlaAspPheLeu :  156
         !  !     !  !|||.!! !   !|||!.!:::!!:! ! !!..!   |||||||||  !
        rgArgValGlyProGluLeuAspAlaLeuAlaArgGluCysProGly---AlaAspPheThr
 3370 : GCCGCGTCGGGCCCGAGCTCGACGCGCTCGCGCGCGAGTGCCCCGGC---GCGGACTTCACG : 3314

  157 : IleValTyrLeuAlaGluAlaHisAlaThrAspAlaTrpAlaPheLysAsn :  173
        .!!||||||:!!|||||||||||||||.!!|||! !||| !!.!.::!::!
        PheValTyrValAlaGluAlaHisAlaAlaAspGluTrpProLeuArgSer
 3313 : TTCGTCTACGTCGCCGAGGCGCACGCCGCGGACGAGTGGCCCCTGCGGTCC : 3261

vulgar: gi|29165348|gb|AAO65268.1| 94 173 . scaffold_8:subseq(1754109,6497) 3494 3260 - 128 M 57 171 G 1 0 M 21 63
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome 1.4.0
##date 2009-03-03
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
scaffold_8:subseq(1754109,6497)	exonerate:protein2genome	gene	3261	3494	128	-	.	gene_id 1 ; sequence gi|29165348|gb|AAO65268.1| ; gene_orientation .
scaffold_8:subseq(1754109,6497)	exonerate:protein2genome	cds	3261	3494	.	-	.	
scaffold_8:subseq(1754109,6497)	exonerate:protein2genome	exon	3261	3494	.	-	.	insertions 0 ; deletions 1
scaffold_8:subseq(1754109,6497)	exonerate:protein2genome	similarity	3261	3494	128	-	.	alignment_id 1 ; Query gi|29165348|gb|AAO65268.1| ; Align 3495 95 171 ; Align 3324 153 63
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis
