Resultados de genewise
>>>eEFSec
genewise $Name: wise2-2-0 $ (unreleased release)
This program is freely distributed under a GPL. See source directory
Copyright (c) GRL limited: portions of the code are from separate copyright
Query protein: SPP00000038_1.0
Comp Matrix: blosum62.bla
Gap open: 12
Gap extension: 2
Start/End default
Target Sequence Contig3160:subseq(15500,3000)
Strand: forward
Start/End (protein) default
Gene Paras: human.gf
Codon Table: codon.table
Subs error: 1e-05
Indel error: 1e-05
Model splice? model
Model codon bias? flat
Model intron bias? tied
Null model syn
Algorithm 623
genewise output
Score 83.30 bits over entire alignment
Scores as bits over a synchronous coding model
Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info
SPP00000038_1.0 7 NVNVGVLGHIDSGKTALARALSTTASTAAFDKQPQSRERGITLDLGFSC
++N+G +GHID GKT L AL++ + K+ S E + +
HINIGTIGHIDHGKTTLTSALTSVLKAKGLAKKAHSYE-----EIDSAP
Contig3160:subs 779 caaagaagcagcgaaatatgtaagcagagcgaagcttg gagtgc
atatgctgataagacctccctcgttacagtcaacacaa ataccc
tatattaataccaaaaaaatgacttataaatgatttca aattct
SPP00000038_1.0 56 FSVPLPARLRSSLPEFQAAPEAEPEPGEPLLQVTLVDCPGHASLIRTII
+ + E++++ L +DCPGHA I+ +I
EEKSRGITINTKHVEYESS----------LRHYAHIDCPGHADYIKNMI
Contig3160:subs 911 ggaaagaaaaaacggtgaa tactgcagtcgcggtaaaaa
aaagggtctacaataaagg tgaacatagcgacaataatt
aaatgtatattgtaacacc aaccttactaacattaatgt
SPP00000038_1.0 105 GGAQIIDLMMLVIDVTKGMQTQSAE-CLVIGQIACQKLVVVLNKIDLLP
GA +D +LVI +T G Q+ E L+I QI + +++ LNK D +
TGAVQMDGAILVISLTDGPMPQTIEHLLLIKQIGIENVIIFLNKEDKIV
Contig3160:subs 1028 agggcagggatgattaggcaccaagcttcaacagagagaattaaggaag
cgctatagcttttctcagctcactaattttaatgtaatttttaaaaatt
ttttagcgtaattagactaggaaaataataaaataattaatataatgaa
SPP00000038_1.0 153 EGK-----RQAAIDKMTKKMQKTLENTKFRGAPIIPV-AAKPGGPEAPE
+ + + +D + K K + G+ + + K E
DKELINFVEEEVLDILNKYNFKEDCVHFISGSALEALNIVKNSNKVDFE
Contig3160:subs 1175 gagcaatgggggcgataatataggtgctatgtgtggtaagaataaggtg
aaattattaaattattaaaataaagtattcgcctactattaacaatata
taatattaaaatataatatttaatttttttattaatacatatataatta
SPP00000038_1.0 196 TEAPQGIPELIELLTSQISIPTRDPSGPFLMSVDHCFSIKGQGTVMTGT
+ I L++ + I P RD PFLM V+ FSI G+G V TG
NIWIKKILNLVDCIDKYIPTPDRDLVKPFLMPVEDSFSITGRGIVATGK
Contig3160:subs 1322 aataaaatatggtagatacacgagcgacttacgggattaagagaggaga
atgtaattattagtaaatcccagattactttctaagtctcgggttccga
tagaaacataatcttataaaatatatattagtaattttaataaaatata
SPP00000038_1.0 245 ILSGSISLGDSVEIPALKVVK--KVKSMQMFHMPITSAMQGDRLGICVT
I G++ +GD +E+ K V +++MF+ + GD +GI +
IERGNVQIGDKLELLGHDSSKMTSVLNIEMFNKSLNKGESGDNVGILLR
Contig3160:subs 1469 agagagcaggatgttgcgttaaatgtaagataattaaggtggaggattc
taggatatgaatattgaaccatccttatattaactaagacgaatgtttg
taattaaattaagaaatcttggaatacaagtcaaatatatatcataaat
SPP00000038_1.0 292 QFDPKLLERGLVCA-PESL
++ ++RG + A PES+
GINKTDIKRGYILAVPESV
Contig3160:subs 1616 gaaaagaaagtatggcgtg
gtaacataggattctcact
aacaataaaactagtaact
//
>>>2766
genewise $Name: wise2-2-0 $ (unreleased release)
This program is freely distributed under a GPL. See source directory
Copyright (c) GRL limited: portions of the code are from separate copyright
Query protein: SPP00000005_1.0
Comp Matrix: blosum62.bla
Gap open: 12
Gap extension: 2
Start/End default
Target Sequence Contig2766:subseq(4000,3000)
Strand: forward
Start/End (protein) default
Gene Paras: human.gf
Codon Table: codon.table
Subs error: 1e-05
Indel error: 1e-05
Model splice? model
Model codon bias? flat
Model intron bias? tied
Null model syn
Algorithm 623
genewise output
Score 25.79 bits over entire alignment
Scores as bits over a synchronous coding model
Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info
SPP00000005_1.0 104 KCEVNGQNEHPVFAYLKDKLP
KC+VN Q P++ YL D LP
KCQVNCQPTSPLMLYLSDSLP
Contig2766:subs 1397 atcgatccatccattcagacc
agatagacccctttatgagtc
gcaactaagcgagacctccct
//
genewise $Name: wise2-2-0 $ (unreleased release)
This program is freely distributed under a GPL. See source directory
Copyright (c) GRL limited: portions of the code are from separate copyright
Query protein: SPP00000002_1.0
Comp Matrix: blosum62.bla
Gap open: 12
Gap extension: 2
Start/End default
Target Sequence Contig2984:subseq(3000,1500)
Strand: forward
Start/End (protein) default
Gene Paras: human.gf
Codon Table: codon.table
Subs error: 1e-05
Indel error: 1e-05
Model splice? model
Model codon bias? flat
Model intron bias? tied
Null model syn
Algorithm 623
genewise output
Score 15.96 bits over entire alignment
Scores as bits over a synchronous coding model
Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info
SPP00000002_1.0 112 CHLLDFASPERPLVVNFGSA-TPPFTSQLPAFRKLV
CH D ++ + ++++ S PPF + LP + + +
CHGSDDSNDQVVIIIHSTSLHNPPFIAPLPTLHRSI
Contig2984:subs 1073 tcgaggaagcggaaactatccacctagctcatccta
gaggaagaaatttttaccctaaccttcctcctagct
tccctcttcaagtccctagctcacccctacaatcca
//
genewise $Name: wise2-2-0 $ (unreleased release)
This program is freely distributed under a GPL. See source directory
Copyright (c) GRL limited: portions of the code are from separate copyright
Query protein: SPP00000032_1.0
Comp Matrix: blosum62.bla
Gap open: 12
Gap extension: 2
Start/End default
Target Sequence Contig3973:subseq(2500,3000)
Strand: forward
Start/End (protein) default
Gene Paras: human.gf
Codon Table: codon.table
Subs error: 1e-05
Indel error: 1e-05
Model splice? model
Model codon bias? flat
Model intron bias? tied
Null model syn
Algorithm 623
genewise output
Score 31.49 bits over entire alignment
Scores as bits over a synchronous coding model
Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info
SPP00000032_1.0 202 PLGTQVAVAVHQWLDIPEKWNKIKLVVTQEDVELAYQE
P+G Q+ +HQ D+P K+K V+ Q+D+E+ Y E
PMGQQIVNYIHQRNDVPFPHVKLKNVI-QQDIEIVYYE
Contig3973:subs 842 cagccagatacccaggctccgacaaga ccgagagttg
ctgaattaataagaatctcatataatt aaatattaaa
aggaatattccagtcgctaccacacat ggttacatta
//
genewise $Name: wise2-2-0 $ (unreleased release)
This program is freely distributed under a GPL. See source directory
Copyright (c) GRL limited: portions of the code are from separate copyright
Query protein: SPP00000013_1.0
Comp Matrix: blosum62.bla
Gap open: 12
Gap extension: 2
Start/End default
Target Sequence Contig4131.0:subseq(9500,3000)
Strand: forward
Start/End (protein) default
Gene Paras: human.gf
Codon Table: codon.table
Subs error: 1e-05
Indel error: 1e-05
Model splice? model
Model codon bias? flat
Model intron bias? tied
Null model syn
Algorithm 623
genewise output
Score 25.28 bits over entire alignment
Scores as bits over a synchronous coding model
Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info
SPP00000013_1.0 46 FSSNLLCSSCDLLGQFNLLQLDPDCRGCCQEEAQ
F+SN C L ++ +L D DC G CQE A+
FNSNTSCEDAIELQRMAMLNEDRDCYGHCQEFAR
Contig4131.0:su 882 tataattgggagtccagacaggcgttgctcgtgc
tacaccgaactatagtcttaaagagagagaatcg
ctatgacgtacaggcgaggtatgttccttgacta
//
genewise $Name: wise2-2-0 $ (unreleased release)
This program is freely distributed under a GPL. See source directory
Copyright (c) GRL limited: portions of the code are from separate copyright
Query protein: SPP00000015_1.0
Comp Matrix: blosum62.bla
Gap open: 12
Gap extension: 2
Start/End default
Target Sequence Contig4096:subseq(45000,3000)
Strand: forward
Start/End (protein) default
Gene Paras: human.gf
Codon Table: codon.table
Subs error: 1e-05
Indel error: 1e-05
Model splice? model
Model codon bias? flat
Model intron bias? tied
Null model syn
Algorithm 623
genewise output
Score 54.42 bits over entire alignment
Scores as bits over a synchronous coding model
Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info
SPP00000015_1.0 100 AYTLDGVDGKQARRTNSSTPLGELFDHGLDSWSCVYFVVTVYSIFGRGS
A T DG+DGKQAR+ S+PLG+L+DHGLD+ V++ +++ G
AQTFDGIDGKQARKLGMSSPLGQLLDHGLDAVVTVFYPYICCTLYPGGF
Contig4096:subs 1102 gcatggaggacgaacgaatccgcccgcgcggggagttctattactcggt
cactagtagaacgatgtgcctgattaagtacttcttacatggctacggt
gggccaccgggcaggcgcgcgggggccccccaggcccgccccgcccccc
SPP00000015_1.0 149 TGVSVFVL
T ++++++
TFITLLLV
Contig4096:subs 1249 ataacccg
cttctttt
gcccccgg
//
genewise $Name: wise2-2-0 $ (unreleased release)
This program is freely distributed under a GPL. See source directory
Copyright (c) GRL limited: portions of the code are from separate copyright
Query protein: SPP00000021_1.0
Comp Matrix: blosum62.bla
Gap open: 12
Gap extension: 2
Start/End default
Target Sequence Contig4165:subseq(81000,3000)
Strand: forward
Start/End (protein) default
Gene Paras: human.gf
Codon Table: codon.table
Subs error: 1e-05
Indel error: 1e-05
Model splice? model
Model codon bias? flat
Model intron bias? tied
Null model syn
Algorithm 623
genewise output
Score 18.60 bits over entire alignment
Scores as bits over a synchronous coding model
Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info
SPP00000021_1.0 30 LFSSRSKYAHSSPWPAFTE
L+S R A+++PW +T+
LYSERCDGAYTAPWTTLTQ
Contig4165:subs 685 ttagctgggtagctaatac
tagaggagcacccgcctca
accgtcttacaggggggtg
//
genewise $Name: wise2-2-0 $ (unreleased release)
This program is freely distributed under a GPL. See source directory
Copyright (c) GRL limited: portions of the code are from separate copyright
Query protein: SPP00000023_1.0
Comp Matrix: blosum62.bla
Gap open: 12
Gap extension: 2
Start/End default
Target Sequence Contig1507:subseq(0,1000)
Strand: forward
Start/End (protein) default
Gene Paras: human.gf
Codon Table: codon.table
Subs error: 1e-05
Indel error: 1e-05
Model splice? model
Model codon bias? flat
Model intron bias? tied
Null model syn
Algorithm 623
genewise output
Score 30.18 bits over entire alignment
Scores as bits over a synchronous coding model
Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info
SPP00000023_1.0 6 TLPRPLSLCLSLCLC----LCLAAAL
+LPR LS CL LCLC LCL A+L
SLPRCLSACLPLCLCASLPLCLVASL
Contig1507:subs 808 atcctcagttcctctgatcctcggat
gtcggtgcgtctgtgcgtctgttcgt
caatcgttcaatcgtccaatcgttca
//
genewise $Name: wise2-2-0 $ (unreleased release)
This program is freely distributed under a GPL. See source directory
Copyright (c) GRL limited: portions of the code are from separate copyright
Query protein: SPP00000024_1.0
Comp Matrix: blosum62.bla
Gap open: 12
Gap extension: 2
Start/End default
Target Sequence Contig4088:subseq(27500,1000)
Strand: forward
Start/End (protein) default
Gene Paras: human.gf
Codon Table: codon.table
Subs error: 1e-05
Indel error: 1e-05
Model splice? model
Model codon bias? flat
Model intron bias? tied
Null model syn
Algorithm 623
genewise output
Score 26.08 bits over entire alignment
Scores as bits over a synchronous coding model
Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info
SPP00000024_1.0 108 EEEKRRQKIEMWDSMQEGKSY-KGN-AKKPQEEDSPGPSTSSVL--KRK
+E R++KI MW+++ + + GN A+ ++ +P + S +L R+
KELSRQKKIPMWEAVLGYQKWGEGNWAQTFLKKKNPKTAFSPLLGGSRR
Contig4088:subs 759 agctccaaacatgggcgtcatgggatgcattaaaacaagttcttggtaa
aatcgaaatctgacttgaaaggagagcacttaaaacacctccttggcgg
agtccaaataggagtgtcaaggaacgcactaaaacaacttccgggaagg
SPP00000024_1.0 153 SDRKPLRGGGYNPLS
+ + PL GGGY+P S
NPKPPLEGGGYSPES
Contig4088:subs 906 acacctggggttcga
acacctagggaccag
caatcgggttcatac
//
genewise $Name: wise2-2-0 $ (unreleased release)
This program is freely distributed under a GPL. See source directory
Copyright (c) GRL limited: portions of the code are from separate copyright
Query protein: SPP00000028_1.0
Comp Matrix: blosum62.bla
Gap open: 12
Gap extension: 2
Start/End default
Target Sequence Contig1916:subseq(1000,3000)
Strand: forward
Start/End (protein) default
Gene Paras: human.gf
Codon Table: codon.table
Subs error: 1e-05
Indel error: 1e-05
Model splice? model
Model codon bias? flat
Model intron bias? tied
Null model syn
Algorithm 623
genewise output
Score 25.03 bits over entire alignment
Scores as bits over a synchronous coding model
Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info
SPP00000028_1.0 30 REHACVVAGLRRF---GCVVCRW
R AC++AG R F C +C+W
RSAACIIAGTRYFHRQACQICKW
Contig1916:subs 883 aaggtaaggacttcacgtcatat
ggccgttcgcgatagacgatgag
gcagcctcgattttagtcaccag
//
genewise $Name: wise2-2-0 $ (unreleased release)
This program is freely distributed under a GPL. See source directory
Copyright (c) GRL limited: portions of the code are from separate copyright
Query protein: SPP00000029_1.0
Comp Matrix: blosum62.bla
Gap open: 12
Gap extension: 2
Start/End default
Target Sequence Contig4158:subseq(21000,3000)
Strand: forward
Start/End (protein) default
Gene Paras: human.gf
Codon Table: codon.table
Subs error: 1e-05
Indel error: 1e-05
Model splice? model
Model codon bias? flat
Model intron bias? tied
Null model syn
Algorithm 623
genewise output
Score 43.45 bits over entire alignment
Scores as bits over a synchronous coding model
Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info
SPP00000029_1.0 63 TPAPAQIPTLVPTPALARIPRLVPPPAPAWIPTPVPTPVPVRNPTPVPT
TPA A +P VP A VP P PA +P P R P +
TPA-AAVPDRVPVQVPAAAHVHVPAPVPARVPVSATATSPARVHVPAAS
Contig4158:subs 1373 acg gggcgcgcgcgcgggcgcgcgcgcgcgcgtgagatcgcgcgcggt
ccc cctcagtctatccccatatccctccgtctccccccccgtatcccc
ttc ttgttttgtgtttttttttatatatttatttttcgtttttttttt
SPP00000029_1.0 112 PAR-----TLTPPVR--VPAPAPAQLLAGIRAALPVLDS
PAR T T P R VPAP PA+ +R +PV S
PARATVSATATSPARVHVPAPVPAKSAGVVRQQVPVPSS
Contig4158:subs 1517 cgcgagtgagatcgcgcgcgcgcgatggggcccgcgcta
ccgcctccccccccgtatccctccaccgttgaatctccg
ttttatttttaagtttttatcggaactctgcaagcaaac
//
genewise $Name: wise2-2-0 $ (unreleased release)
This program is freely distributed under a GPL. See source directory
Copyright (c) GRL limited: portions of the code are from separate copyright
Query protein: SPP00000031_1.0
Comp Matrix: blosum62.bla
Gap open: 12
Gap extension: 2
Start/End default
Target Sequence Contig4102:subseq(6000,3000)
Strand: forward
Start/End (protein) default
Gene Paras: human.gf
Codon Table: codon.table
Subs error: 1e-05
Indel error: 1e-05
Model splice? model
Model codon bias? flat
Model intron bias? tied
Null model syn
Algorithm 623
genewise output
Score 21.27 bits over entire alignment
Scores as bits over a synchronous coding model
Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info
SPP00000031_1.0 38 TYLELASAVKEQYPGIEIESRLGGTGAFEIEINGQLVFSKLENGGFPYE
+Y +L + +PG E+ + G F E G F ++ +G FP +
SYYQLHMVHHQIHPGDELRTVSLHLGKFHQERRGVRRFHRVTHGSFPIQ
Contig4102:subs 758 tttcccagcccaccgggccagtcccgatccgccggcctccgacgatcac
caaatattaaatacgaatgctctatgataaagggtggtagtcaggtcta
gctggtgtccaattgcagggaagtgggttggtgtttcctaatttctgtg
SPP00000031_1.0 87 KDLIEAIRRASNGETLEKITNSRPP
AI+ + L +I R P
NPPCSAIQHLYHYSNLHRIPIRRRP
Contig4102:subs 905 accttgaccttctaacccacaccac
accgcctaataaagatagtctgggc
tagttatgtgtctttttgcccccgt
//
genewise $Name: wise2-2-0 $ (unreleased release)
This program is freely distributed under a GPL. See source directory
Copyright (c) GRL limited: portions of the code are from separate copyright
Query protein: SPP00000034_1.0
Comp Matrix: blosum62.bla
Gap open: 12
Gap extension: 2
Start/End default
Target Sequence Contig4075:subseq(18500,3000)
Strand: forward
Start/End (protein) default
Gene Paras: human.gf
Codon Table: codon.table
Subs error: 1e-05
Indel error: 1e-05
Model splice? model
Model codon bias? flat
Model intron bias? tied
Null model syn
Algorithm 623
genewise output
Score 379.96 bits over entire alignment
Scores as bits over a synchronous coding model
Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info
SPP00000034_1.0 13 YDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVTPTPLGTRWGLGGTCVN
YD +IGGG GGLAAAKEAA G K ++ D+V P+P GT WGLGGTCVN
YDFAVIGGGCGGLAAAKEAASLGAKTILFDYVRPSPRGTTWGLGGTCVN
Contig4075:subs 472 tgtggagggtggtgggagggatggaaactgtgcctccgaatgcggatga
aatcttggggggtcccaaccgtgcactttaatgcccggccggtggcgta
ccccctcatctagcctggtccgagggtatttgcttgtcatgtcctctgt
SPP00000034_1.0 62 VGCIPKKLMHQAALLGQALQDSRNYGWKVEETVKHDWDRMIE
VGCIPKKLMH A +LG + D GW E HDW R++
VGCIPKKLMHYAGILGHSSHDREALGWGNHEG-PHDWGRLVN
Contig4075:subs 619 ggtacaatactggatgcttcgcggcgtgacgg ccgtgccga
tggtcaattaacgttgaccaagactgggaaag caagggtta
cctcgggggcttctgccggtttggttgcctgt gctgctttc
SPP00000034_1.0 104 AVQNHIGSLNWGYRVALREKKVVYEN
VQN+I LN+ YR L K V Y N
TVQNYIKMLNFSYRSGLMSKNVEYVN
Contig4075:subs 742 GTAAGAT Intron 1 CAGagcataaacatttctgcataaggtga
<0-----[742 : 779]-0>ctaaatattatcagcgttcaataata
cggcccggcctcccgtcggaccaccc
SPP00000034_1.0 130 AYGQFIGPHRIKATNNKGKEKIYSAERFLIATGERPRYLG-IPGDKEYC
A + + + T+ KG++ A+ LIA G RP + G +Y
AMASLADKNTVTYTDKKGEKHQIKAKNVLIAIGARPTIPSDVKGAWDYS
Contig4075:subs 858 gagacggaaagatagaaggaccaagaagcagaggccaacaggaggtgtt
ctcgtcaaactcacaaagaaaatacaatttctgcgcctcgatagcgaac
cggctctacggacccgggggtgcgcgtggctcagtccccctggtagcca
SPP00000034_1.0 178 ISSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLR
I+SDDL+S GKTL+VG S+VALECAGFL +G DVTV VRS++LR
ITSDDLMSRKEPVGKTLIVGGSFVALECAGFLTSMGYDVTVAVRSLILR
Contig4075:subs 1005 aatggtaaaagcggaacagggttggcgtggtcatagtggagggctcaca
tccaattggaactgactttggcttctagcgttcctgaatctctgctttg
cctctagcgggcccgttcgctgcttggccccccggtccccccctttata
SPP00000034_1.0 227 GFDQDMANKIGEHMEEHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTN
GFD+ A+K+ E M G KF VP + ++E G RL + +
GFDRQCADKVQELMLATGTKFKNGVVPQAITKLENG---RLYIEFTDGS
Contig4075:subs 1152 gtgcctggagcgcatgagaataagggccgaaacgag actagtagga
gtagagcaataatttccgcataagttcactcataag gtatatcagg
ccccgtgcgcggtgggtccgcgcatggacccacgtg aaccacctcc
SPP00000034_1.0 276 SEEIIEGEYNTVMLAIGRDACTR-KIGLETVGVKINEKTGKIPVTDEEQ
S+E ++T+M A GR +R L VG+K++E GKI + ++ +
SDE-----FDTLMYATGRSVSSRMQKELSDVGIKFSE-YGKI-IAEDGK
Contig4075:subs 1290 tgg tgacatgagctgttaacagcagggaatag tgaa agggga
caa tacttaccggctccgtaaatgatgtatga agat tcaaga
tca tcgggctccttgcaggaggcccgccaccg ccac tcgtcg
SPP00000034_1.0 324 TNVPYIYAIGDILEDKVELTPVAIQAGRLLAQRLYAGSTVK
T+V +YA+GD++E L PVA++ G LLA+R++ S K
TSVEGVYAVGDVVEGNPALAPVAVKDGELLARRIFGNSDKK
Contig4075:subs 1416 atggggtggggggggacgcgcgggagggccgcaatgatgaa
cctagtactgattagacctcctctaagattcggttgacaaa
ctggcgccctcgggccttcaggctgctagtccgccccacgg
SPP00000034_1.0 365 CDYENVPTTVFTPLEYGACGLSEEKA
D +P VFTP EY CG+SEE A
LDLNYIPMCVFTPYEYARCGISEETA
Contig4075:subs 1539 GTAGGCT Intron 2 CAGcgcatacatgtactgtgctgatggag
<0-----[1539 : 1575]-0>tataatctgttccaaacgggtcaacc
ttgcctcgtccggcacggtatgggac
SPP00000034_1.0 391 VEKFGEENIEVYHSYFWPLEWTIPSRDNNK--------------CYAKI
+ +GE+ +VY + LE+ R+ + C +K+
SKLYGED-FDVYLKEYTTLEFAAVHREKVESLRADEFDVDMPPTCLSKM
Contig4075:subs 1654 tattggg tggtcagtaacgtgggccgaggatcgggtgggaccatctaa
catagaa tatataaacctatcctagaatagtgcaatatatcccgtcat
cagcgac ttccgggcgtggtgttccggagcgctcgccccggttcgcag
SPP00000034_1.0 426 ICNTKDNERVVGFHVLGPNAGEVTQGFAAALKCGLTKKQLDSTIGIHPV
IC K + VVG+H +GPNAGE+ QG+ A++ G+TK+++D TIGIHP
IC--KKDGTVVGLHFVGPNAGEIMQGLCMAVRKGITKEEIDDTIGIHPT
Contig4075:subs 1798 at aaggagggtctggcagggaacgctaggcagaaaggaggaagacca
tg aaagcttgtattgcacgattagtgtctgagtcaaataactgtacc
cc ggctccccgcccctcccaaggcctgtgcgaccaggtcccctccgt
SPP00000034_1.0 475 CAEVFTTLSVTKRSGAS-ILQAGCUG
AE F L+VTK+SG S + GC G
DAESFVNLTVTKKSGESWVASQGCGG
Contig4075:subs 1939 gggatgacagaaatggttggacgtgg
acagttatctcaacgacgtcgagggg
ctgccatctcggaccgagggcagtcc
//
genewise $Name: wise2-2-0 $ (unreleased release)
This program is freely distributed under a GPL. See source directory
Copyright (c) GRL limited: portions of the code are from separate copyright
Query protein: SPP00000035_1.0
Comp Matrix: blosum62.bla
Gap open: 12
Gap extension: 2
Start/End default
Target Sequence Contig4075:subseq(18500,3000)
Strand: forward
Start/End (protein) default
Gene Paras: human.gf
Codon Table: codon.table
Subs error: 1e-05
Indel error: 1e-05
Model splice? model
Model codon bias? flat
Model intron bias? tied
Null model syn
Algorithm 623
genewise output
Score 400.11 bits over entire alignment
Scores as bits over a synchronous coding model
Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info
SPP00000035_1.0 40 YDLLVVGGGSGGLACAKEAAQLGRKVAVVDYVEPSPQGTRWGLGGTCVN
YD V+GGG GGLA AKEAA LG K + DYV PSP+GT WGLGGTCVN
YDFAVIGGGCGGLAAAKEAASLGAKTILFDYVRPSPRGTTWGLGGTCVN
Contig4075:subs 472 tgtggagggtggtgggagggatggaaactgtgcctccgaatgcggatga
aatcttggggggtcccaaccgtgcactttaatgcccggccggtggcgta
ccccctcatctagcctggtccgagggtatttgcttgtcatgtcctctgt
SPP00000035_1.0 89 VGCIPKKLMHQAALLGGLIQDAPNYGWEVAQPVPHDWRKMAE
VGCIPKKLMH A +LG D GW + PHDW ++
VGCIPKKLMHYAGILGHSSHDREALGWGNHEG-PHDWGRLVN
Contig4075:subs 619 ggtacaatactggatgcttcgcggcgtgacgg ccgtgccga
tggtcaattaacgttgaccaagactgggaaag caagggtta
cctcgggggcttctgccggtttggttgcctgt gctgctttc
SPP00000035_1.0 131 AVQNHVKSLNWGHRVQLQDRKVKYFN
VQN++K LN+ +R L + V+Y N
TVQNYIKMLNFSYRSGLMSKNVEYVN
Contig4075:subs 742 GTAAGAT Intron 1 CAGagcataaacatttctgcataaggtga
<0-----[742 : 779]-0>ctaaatattatcagcgttcaataata
cggcccggcctcccgtcggaccaccc
SPP00000035_1.0 157 IKASFVDEHTVCGVAKGGKEILLSADHIIIATGGRPRYPTHIEGALEYG
AS+ D++TV K G++ + A +++IA G RP P+ ++GA +Y
AMASLADKNTVTYTDKKGEKHQIKAKNVLIAIGARPTIPSDVKGAWDYS
Contig4075:subs 858 gagacggaaagatagaaggaccaagaagcagaggccaacaggaggtgtt
ctcgtcaaactcacaaagaaaatacaatttctgcgcctcgatagcgaac
cggctctacggacccgggggtgcgcgtggctcagtccccctggtagcca
SPP00000035_1.0 206 ITSDDIFWLKESPGKTLVVGASYVALECAGFLTGIGLDTTIMMRSIPLR
ITSDD++ KE GKTL+VG S+VALECAGFLT +G D T+ +RS+ LR
ITSDDLMSRKEPVGKTLIVGGSFVALECAGFLTSMGYDVTVAVRSLILR
Contig4075:subs 1005 aatggtaaaagcggaacagggttggcgtggtcatagtggagggctcaca
tccaattggaactgactttggcttctagcgttcctgaatctctgctttg
cctctagcgggcccgttcgctgcttggccccccggtccccccctttata
SPP00000035_1.0 255 GFDQQMSSMVIEHMASHGTRFLRGCAPSRVRRLPDGQLQVTWEDSTTGK
GFD+Q + V E M + GT+F G P + +L +G+L + + D ++ +
GFDRQCADKVQELMLATGTKFKNGVVPQAITKLENGRLYIEFTDGSSDE
Contig4075:subs 1152 gtgcctggagcgcatgagaataagggccgaaacgagactagtaggatgg
gtagagcaataatttccgcataagttcactcataaggtatatcaggcaa
ccccgtgcgcggtgggtccgcgcatggacccacgtgaaccacctcctca
SPP00000035_1.0 304 EDTGTFDTVLWAIGRVPDTR-SLNLEKAGVDTSPDTQKILVDSREATSV
FDT+++A GR +R L G+ S + I D + TSV
-----FDTLMYATGRSVSSRMQKELSDVGIKFSEYGKIIAEDGK--TSV
Contig4075:subs 1299 tgacatgagctgttaacagcagggaatagtgaaagggga atg
tacttaccggctccgtaaatgatgtatgaagattcaaga cct
tcgggctccttgcaggaggcccgccaccgccactcgtcg ctg
SPP00000035_1.0 352 PHIYAIGDVVEGRPELTPIAIMAGRLLVQRLFGGSSDL
+YA+GDVVEG P L P+A+ G LL +R+FG S
EGVYAVGDVVEGNPALAPVAVKDGELLARRIFGNSDKK
Contig4075:subs 1425 gggtggggggggacgcgcgggagggccgcaatgatgaa
agtactgattagacctcctctaagattcggttgacaaa
gcgccctcgggccttcaggctgctagtccgccccacgg
SPP00000035_1.0 390 MDYDNVPTTVFTPLEYGCVGLSEEEA
+D + +P VFTP EY G+SEE A
LDLNYIPMCVFTPYEYARCGISEETA
Contig4075:subs 1539 GTAGGCT Intron 2 CAGcgcatacatgtactgtgctgatggag
<0-----[1539 : 1575]-0>tataatctgttccaaacgggtcaacc
ttgcctcgtccggcacggtatgggac
SPP00000035_1.0 416 VARHGQEHVEVYHAHYKPLEFTVAGRDASQ--------------CYVKM
+G++ +VY Y LEF R+ + C KM
SKLYGED-FDVYLKEYTTLEFAAVHREKVESLRADEFDVDMPPTCLSKM
Contig4075:subs 1654 tattggg tggtcagtaacgtgggccgaggatcgggtgggaccatctaa
catagaa tatataaacctatcctagaatagtgcaatatatcccgtcat
cagcgac ttccgggcgtggtgttccggagcgctcgccccggttcgcag
SPP00000035_1.0 451 VCLREPPQLVLGLHFLGPNAGEVTQGFALGIKCGASYAQVMRTVGIHPT
+C ++ V+GLHF+GPNAGE+ QG+ + ++ G + ++ T+GIHPT
ICKKD--GTVVGLHFVGPNAGEIMQGLCMAVRKGITKEEIDDTIGIHPT
Contig4075:subs 1798 ataag gagggtctggcagggaacgctaggcagaaaggaggaagacca
tgaaa gcttgtattgcacgattagtgtctgagtcaaataactgtacc
ccggc tccccgcccctcccaaggcctgtgcgaccaggtcccctccgt
SPP00000035_1.0 500 CSEEVVKLRISKRSG
+E V L ++K+SG
DAESFVNLTVTKKSG
Contig4075:subs 1939 gggatgacagaaatg
acagttatctcaacg
ctgccatctcggacc
//
genewise $Name: wise2-2-0 $ (unreleased release)
This program is freely distributed under a GPL. See source directory
Copyright (c) GRL limited: portions of the code are from separate copyright
Query protein: SPP00000036_1.0
Comp Matrix: blosum62.bla
Gap open: 12
Gap extension: 2
Start/End default
Target Sequence Contig4075:subseq(18500,3000)
Strand: forward
Start/End (protein) default
Gene Paras: human.gf
Codon Table: codon.table
Subs error: 1e-05
Indel error: 1e-05
Model splice? model
Model codon bias? flat
Model intron bias? tied
Null model syn
Algorithm 623
genewise output
Score 384.58 bits over entire alignment
Scores as bits over a synchronous coding model
Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info
SPP00000036_1.0 268 YDLIIIGGGSGGLSCAKEAAILGKKVMVLDFVVPSPQGTSWGLGGTCVN
YD +IGGG GGL+ AKEAA LG K ++ D+V PSP+GT+WGLGGTCVN
YDFAVIGGGCGGLAAAKEAASLGAKTILFDYVRPSPRGTTWGLGGTCVN
Contig4075:subs 472 tgtggagggtggtgggagggatggaaactgtgcctccgaatgcggatga
aatcttggggggtcccaaccgtgcactttaatgcccggccggtggcgta
ccccctcatctagcctggtccgagggtatttgcttgtcatgtcctctgt
SPP00000036_1.0 317 VGCIPKKLMHQAALLGQALCDSRKFGWEYNQQVRHNWETMTK
VGCIPKKLMH A +LG + D +GW N + H+W +
VGCIPKKLMHYAGILGHSSHDREALGWG-NHEGPHDWGRLVN
Contig4075:subs 619 ggtacaatactggatgcttcgcggcgtg acggccgtgccga
tggtcaattaacgttgaccaagactggg aaagcaagggtta
cctcgggggcttctgccggtttggttgc ctgtgctgctttc
SPP00000036_1.0 359 AIQNHISSLNWGYRLSLREKAVAYVN
+QN+I LN+ YR L K V YVN
TVQNYIKMLNFSYRSGLMSKNVEYVN
Contig4075:subs 742 GTAAGAT Intron 1 CAGagcataaacatttctgcataaggtga
<0-----[742 : 779]-0>ctaaatattatcagcgttcaataata
cggcccggcctcccgtcggaccaccc
SPP00000036_1.0 385 SYGEFVEHHKIKATNKKGQETYYTAAQFVIATGERPRYLG-IQGDKEYC
+ + + + + T+KKG++ A +IA G RP ++G +Y
AMASLADKNTVTYTDKKGEKHQIKAKNVLIAIGARPTIPSDVKGAWDYS
Contig4075:subs 858 gagacggaaagatagaaggaccaagaagcagaggccaacaggaggtgtt
ctcgtcaaactcacaaagaaaatacaatttctgcgcctcgatagcgaac
cggctctacggacccgggggtgcgcgtggctcagtccccctggtagcca
SPP00000036_1.0 433 ITSDDLFSLPYCPGKTLVVGASYVALECAGFLAGFGLDVTVMVRSILLR
ITSDDL+S GKTL+VG S+VALECAGFL +G DVTV VRS++LR
ITSDDLMSRKEPVGKTLIVGGSFVALECAGFLTSMGYDVTVAVRSLILR
Contig4075:subs 1005 aatggtaaaagcggaacagggttggcgtggtcatagtggagggctcaca
tccaattggaactgactttggcttctagcgttcctgaatctctgctttg
cctctagcgggcccgttcgctgcttggccccccggtccccccctttata
SPP00000036_1.0 482 GFDQEMAEKVGSYMEQHGVKFLRKFIPVMVQQLEKGSPGKLKVLAKSTE
GFD++ A+KV M G KF +P + +LE G + + T+
GFDRQCADKVQELMLATGTKFKNGVVPQAITKLENG-----RLYIEFTD
Contig4075:subs 1152 gtgcctggagcgcatgagaataagggccgaaacgag actagtag
gtagagcaataatttccgcataagttcactcataag gtatatca
ccccgtgcgcggtgggtccgcgcatggacccacgtg aaccacct
SPP00000036_1.0 531 GTETIEGVYNTVLLAIGRDSCTR-KIGLEKIGVKINEKSGKIPVNDVEQ
G+ ++T++ A GR +R L +G+K++E GKI D +
GSSD---EFDTLMYATGRSVSSRMQKELSDVGIKFSE-YGKIIAED-GK
Contig4075:subs 1284 gatg gtgacatgagctgttaacagcagggaatag tgaaaggg ga
ggca atacttaccggctccgtaaatgatgtatga agattcaa ga
cctc atcgggctccttgcaggaggcccgccaccg ccactcgt cg
SPP00000036_1.0 579 TNVPYVYAVGDILEDKPELTPVAIQSGKLLAQRLFGASLEK
T+V VYAVGD++E P L PVA++ G+LLA+R+FG S +K
TSVEGVYAVGDVVEGNPALAPVAVKDGELLARRIFGNSDKK
Contig4075:subs 1416 atggggtggggggggacgcgcgggagggccgcaatgatgaa
cctagtactgattagacctcctctaagattcggttgacaaa
ctggcgccctcgggccttcaggctgctagtccgccccacgg
SPP00000036_1.0 620 CDYINVPTTVFTPLEYGCCGLSEEKA
D +P VFTP EY CG+SEE A
LDLNYIPMCVFTPYEYARCGISEETA
Contig4075:subs 1539 GTAGGCT Intron 2 CAGcgcatacatgtactgtgctgatggag
<0-----[1539 : 1575]-0>tataatctgttccaaacgggtcaacc
ttgcctcgtccggcacggtatgggac
SPP00000036_1.0 646 IEVYKKENLEIYHTLFWPLEWTVAGREN--------------NTCYAKI
++Y E+ ++Y + LE+ RE TC +K+
SKLYG-EDFDVYLKEYTTLEFAAVHREKVESLRADEFDVDMPPTCLSKM
Contig4075:subs 1654 tattg ggtggtcagtaacgtgggccgaggatcgggtgggaccatctaa
catag aatatataaacctatcctagaatagtgcaatatatcccgtcat
cagcg acttccgggcgtggtgttccggagcgctcgccccggttcgcag
SPP00000036_1.0 681 ICNKFDHDRVIGFHILGPNAGEVTQGFAAAMKCGLTKQLLDDTIGIHPT
IC K V+G+H++GPNAGE+ QG+ A++ G+TK+ +DDTIGIHPT
ICKK--DGTVVGLHFVGPNAGEIMQGLCMAVRKGITKEEIDDTIGIHPT
Contig4075:subs 1798 ataa ggagggtctggcagggaacgctaggcagaaaggaggaagacca
tgaa agcttgtattgcacgattagtgtctgagtcaaataactgtacc
ccgg ctccccgcccctcccaaggcctgtgcgaccaggtcccctccgt
SPP00000036_1.0 730 CGEVFTTLEITKSSGLD-ITQKGCUG
E F L +TK SG + +GC G
DAESFVNLTVTKKSGESWVASQGCGG
Contig4075:subs 1939 gggatgacagaaatggttggacgtgg
acagttatctcaacgacgtcgagggg
ctgccatctcggaccgagggcagtcc
//