Resultados de genewise con las proteínas compuestas
genewise $Name: wise2-2-0 $ (unreleased release)
This program is freely distributed under a GPL. See source directory
Copyright (c) GRL limited: portions of the code are from separate copyright
Query protein: SelI_compuesta
Comp Matrix: blosum62.bla
Gap open: 12
Gap extension: 2
Start/End default
Target Sequence Contig4096
Strand: forward
Start/End (protein) default
Gene Paras: human.gf
Codon Table: codon.table
Subs error: 1e-05
Indel error: 1e-05
Model splice? model
Model codon bias? flat
Model intron bias? tied
Null model syn
Algorithm 623
genewise output
Score 212.66 bits over entire alignment
Scores as bits over a synchronous coding model
Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info
SelI_compuesta 100 AQTFDGIDGKQARKLGMSSPLGQLLDHGLDAVVTVFYPYICCTLYPGGF
AQTFDGIDGKQARKLGMSSPLGQLLDHGLDAVVTVFYPYICCTLYPGGF
AQTFDGIDGKQARKLGMSSPLGQLLDHGLDAVVTVFYPYICCTLYPGGF
Contig4096 46102 gcatggaggacgaacgaatccgcccgcgcggggagttctattactcggt
cactagtagaacgatgtgcctgattaagtacttcttacatggctacggt
gggccaccgggcaggcgcgcgggggccccccaggcccgccccgcccccc
SelI_compuesta 149 TFITLLLVAIAPIHVLCTVWRESEFETFEYTNGVL
TFITLLLVAIAPIHVLCTVWRESEFETFEYTNGVL
TFITLLLVAIAPIHVLCTVWRESEFETFEYTNGVL
Contig4096 46249 ataacccggagcacgttagtcgagtgatgtaaggc
cttcttttctcctattgctggagatactaacagtt
gcccccgggaggcccgcccgtgcgcgccgccccgg
//
genewise $Name: wise2-2-0 $ (unreleased release)
This program is freely distributed under a GPL. See source directory
Copyright (c) GRL limited: portions of the code are from separate copyright
Query protein: TR1
Comp Matrix: blosum62.bla
Gap open: 12
Gap extension: 2
Start/End default
Target Sequence Contig4075
Strand: forward
Start/End (protein) default
Gene Paras: human.gf
Codon Table: codon.table
Subs error: 1e-05
Indel error: 1e-05
Model splice? model
Model codon bias? flat
Model intron bias? tied
Null model syn
Algorithm 623
genewise output
Score 1130.94 bits over entire alignment
Scores as bits over a synchronous coding model
Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info
TR1 13 YDFAVIGGGCGGLAAAKEAASLGAKTILFDYVRPSPRGTTWGLGGTCVN
YDFAVIGGGCGGLAAAKEAASLGAKTILFDYVRPSPRGTTWGLGGTCVN
YDFAVIGGGCGGLAAAKEAASLGAKTILFDYVRPSPRGTTWGLGGTCVN
Contig4075 18972 tgtggagggtggtgggagggatggaaactgtgcctccgaatgcggatga
aatcttggggggtcccaaccgtgcactttaatgcccggccggtggcgta
ccccctcatctagcctggtccgagggtatttgcttgtcatgtcctctgt
TR1 62 VGCIPKKLMHYAGILGHSSHDREALGWGNHEGPHDWGRLVQ
VGCIPKKLMHYAGILGHSSHDREALGWGNHEGPHDWGRLV
VGCIPKKLMHYAGILGHSSHDREALGWGNHEGPHDWGRLVN
Contig4075 19119 ggtacaatactggatgcttcgcggcgtgacggccgtgccga
tggtcaattaacgttgaccaagactgggaaagcaagggtta
cctcgggggcttctgccggtttggttgcctgtgctgctttc
TR1 103 TVQNYIKMLNFSYRSGLMSKNVEYVN
TVQNYIKMLNFSYRSGLMSKNVEYVN
TVQNYIKMLNFSYRSGLMSKNVEYVN
Contig4075 19242 GTAAGAT Intron 1 CAGagcataaacatttctgcataaggtga
<0-----[19242:19279]-0>ctaaatattatcagcgttcaataata
cggcccggcctcccgtcggaccaccc
TR1 129 AMASLADKNTVTYTDKKGEKHQIKAKNVLIAIGARPTIPSDVKGAWDYS
AMASLADKNTVTYTDKKGEKHQIKAKNVLIAIGARPTIPSDVKGAWDYS
AMASLADKNTVTYTDKKGEKHQIKAKNVLIAIGARPTIPSDVKGAWDYS
Contig4075 19358 gagacggaaagatagaaggaccaagaagcagaggccaacaggaggtgtt
ctcgtcaaactcacaaagaaaatacaatttctgcgcctcgatagcgaac
cggctctacggacccgggggtgcgcgtggctcagtccccctggtagcca
TR1 178 ITSDDLMSRKEPVGKTLIVGGSFVALECAGFLTSMGYDVTVAVRSLILR
ITSDDLMSRKEPVGKTLIVGGSFVALECAGFLTSMGYDVTVAVRSLILR
ITSDDLMSRKEPVGKTLIVGGSFVALECAGFLTSMGYDVTVAVRSLILR
Contig4075 19505 aatggtaaaagcggaacagggttggcgtggtcatagtggagggctcaca
tccaattggaactgactttggcttctagcgttcctgaatctctgctttg
cctctagcgggcccgttcgctgcttggccccccggtccccccctttata
TR1 227 GFDRQCADKVQELMLATGTKFKNGVVPQAITKLENGRLYIEFTDGSSDE
GFDRQCADKVQELMLATGTKFKNGVVPQAITKLENGRLYIEFTDGSSDE
GFDRQCADKVQELMLATGTKFKNGVVPQAITKLENGRLYIEFTDGSSDE
Contig4075 19652 gtgcctggagcgcatgagaataagggccgaaacgagactagtaggatgg
gtagagcaataatttccgcataagttcactcataaggtatatcaggcaa
ccccgtgcgcggtgggtccgcgcatggacccacgtgaaccacctcctca
TR1 276 FDTLMYATGRSVSSRMQKELSDVGIKFSEYGKIIAEDGKTSVEGVYAVG
FDTLMYATGRSVSSRMQKELSDVGIKFSEYGKIIAEDGKTSVEGVYAVG
FDTLMYATGRSVSSRMQKELSDVGIKFSEYGKIIAEDGKTSVEGVYAVG
Contig4075 19799 tgacatgagctgttaacagcagggaatagtgaaaggggaatggggtggg
tacttaccggctccgtaaatgatgtatgaagattcaagacctagtactg
tcgggctccttgcaggaggcccgccaccgccactcgtcgctggcgccct
TR1 325 DVVEGNPALAPVAVKDGELLARRIFGNSDKK
DVVEGNPALAPVAVKDGELLARRIFGNSDKK
DVVEGNPALAPVAVKDGELLARRIFGNSDKK
Contig4075 19946 gggggacgcgcgggagggccgcaatgatgaa
attagacctcctctaagattcggttgacaaa
cgggccttcaggctgctagtccgccccacgg
TR1 356 VGFNYIPMCVFTPYEYARCGISEETA
+ +NYIPMCVFTPYEYARCGISEETA
LDLNYIPMCVFTPYEYARCGISEETA
Contig4075 20039 GTAGGCT Intron 2 CAGcgcatacatgtactgtgctgatggag
<0-----[20039:20075]-0>tataatctgttccaaacgggtcaacc
ttgcctcgtccggcacggtatgggac
TR1 382 SKLYGEDFDVYLKEYTTLEFAAVHREKVESLRADEFDVDMPPTCLSKMI
SKLYGEDFDVYLKEYTTLEFAAVHREKVESLRADEFDVDMPPTCLSKMI
SKLYGEDFDVYLKEYTTLEFAAVHREKVESLRADEFDVDMPPTCLSKMI
Contig4075 20154 tattgggtggtcagtaacgtgggccgaggatcgggtgggaccatctaaa
catagaatatataaacctatcctagaatagtgcaatatatcccgtcatt
cagcgacttccgggcgtggtgttccggagcgctcgccccggttcgcagc
TR1 431 CKKDGTVVGLHFVGPNAGEIMQGLCMAVRKGITKEEIDDTIGIHPTDAE
CKKDGTVVGLHFVGPNAGEIMQGLCMAVRKGITKEEIDDTIGIHPTDAE
CKKDGTVVGLHFVGPNAGEIMQGLCMAVRKGITKEEIDDTIGIHPTDAE
Contig4075 20301 taaggagggtctggcagggaacgctaggcagaaaggaggaagaccaggg
gaaagcttgtattgcacgattagtgtctgagtcaaataactgtaccaca
cggctccccgcccctcccaaggcctgtgcgaccaggtcccctccgtctg
TR1 480 SFVNLTVTKKSGES-ILQAGCUG
SFVNLTVTKKSGES + GC G
SFVNLTVTKKSGESWVASQGCGG
Contig4075 20448 atgacagaaatggttggacgtgg
gttatctcaacgacgtcgagggg
ccatctcggaccgagggcagtcc
tga......taa/tga/tag
//
genewise $Name: wise2-2-0 $ (unreleased release)
This program is freely distributed under a GPL. See source directory
Copyright (c) GRL limited: portions of the code are from separate copyright
Query protein: TR2
Comp Matrix: blosum62.bla
Gap open: 12
Gap extension: 2
Start/End default
Target Sequence Contig4075
Strand: forward
Start/End (protein) default
Gene Paras: human.gf
Codon Table: codon.table
Subs error: 1e-05
Indel error: 1e-05
Model splice? model
Model codon bias? flat
Model intron bias? tied
Null model syn
Algorithm 623
genewise output
Score 1111.09 bits over entire alignment
Scores as bits over a synchronous coding model
Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info
TR2 40 YDFAVIGGGCGGLAAAKEAASLGAKTILFDYVRPSPRGTTWGLGGTCVN
YDFAVIGGGCGGLAAAKEAASLGAKTILFDYVRPSPRGTTWGLGGTCVN
YDFAVIGGGCGGLAAAKEAASLGAKTILFDYVRPSPRGTTWGLGGTCVN
Contig4075 18972 tgtggagggtggtgggagggatggaaactgtgcctccgaatgcggatga
aatcttggggggtcccaaccgtgcactttaatgcccggccggtggcgta
ccccctcatctagcctggtccgagggtatttgcttgtcatgtcctctgt
TR2 89 VGCIPKKLMHYAGILGHSSHDREALGWGNHEGPHDWGRL----------
VGCIPKKLMHYAGILGHSSHDREALGWGNHEGPHDWGRL
VGCIPKKLMHYAGILGHSSHDREALGWGNHEGPHDWGRLVNVRY!VYGD
Contig4075 19119 ggtacaatactggatgcttcgcggcgtgacggccgtgccgagat2gtgg
tggtcaattaacgttgaccaagactgggaaagcaagggttatga taga
cctcgggggcttctgccggtttggttgcctgtgctgctttcaac gttc
TR2 128 --LRQTVQNYIKMLNFSYRSGLMSKNVEYVNAMASLADKNTVTYTDKKG
LRQTVQNYIKMLNFSYRSGLMSKNVEYVNAMASLADKNTVTYTDKKG
LTLRQTVQNYIKMLNFSYRSGLMSKNVEYVNAMASLADKNTVTYTDKKG
Contig4075 19265 cacccagcataaacatttctgcataaggtgagagacggaaagatagaag
tctgactaaatattatcagcgttcaataatactcgtcaaactcacaaag
gtgggcggcccggcctcccgtcggaccaccccggctctacggacccggg
TR2 175 EKHQIKAKNVLIAIGARPTIPSDVKGAWDYSITSDDLMSRKEPVGKTLI
EKHQIKAKNVLIAIGARPTIPSDVKGAWDYSITSDDLMSRKEPVGKTLI
EKHQIKAKNVLIAIGARPTIPSDVKGAWDYSITSDDLMSRKEPVGKTLI
Contig4075 19412 gaccaagaagcagaggccaacaggaggtgttaatggtaaaagcggaaca
aaaatacaatttctgcgcctcgatagcgaactccaattggaactgactt
ggtgcgcgtggctcagtccccctggtagccacctctagcgggcccgttc
TR2 224 VGGSFVALECAGFLTSMGYDVTVAVRSLILRGFDRQCADKVQELMLATG
VGGSFVALECAGFLTSMGYDVTVAVRSLILRGFDRQCADKVQELMLATG
VGGSFVALECAGFLTSMGYDVTVAVRSLILRGFDRQCADKVQELMLATG
Contig4075 19559 gggttggcgtggtcatagtggagggctcacagtgcctggagcgcatgag
tggcttctagcgttcctgaatctctgctttggtagagcaataatttccg
gctgcttggccccccggtccccccctttataccccgtgcgcggtgggtc
TR2 273 TKFKNGVVPQAITKLENGRLYIEFTDGSSDEFDTLMYATGRSVSSRMQK
TKFKNGVVPQAITKLENGRLYIEFTDGSSDEFDTLMYATGRSVSSRMQK
TKFKNGVVPQAITKLENGRLYIEFTDGSSDEFDTLMYATGRSVSSRMQK
Contig4075 19706 aataagggccgaaacgagactagtaggatggtgacatgagctgttaaca
cataagttcactcataaggtatatcaggcaatacttaccggctccgtaa
cgcgcatggacccacgtgaaccacctcctcatcgggctccttgcaggag
TR2 322 ELSDVGIKFSEYGKIIAEDGKTSVEGVYAVGDVVEGNPALAPVAVKDGE
ELSDVGIKFSEYGKIIAEDGKTSVEGVYAVGDVVEGNPALAPVAVKDGE
ELSDVGIKFSEYGKIIAEDGKTSVEGVYAVGDVVEGNPALAPVAVKDGE
Contig4075 19853 gcagggaatagtgaaaggggaatggggtggggggggacgcgcgggaggg
atgatgtatgaagattcaagacctagtactgattagacctcctctaaga
gcccgccaccgccactcgtcgctggcgccctcgggccttcaggctgcta
TR2 371 LLARRIFGNS--- LDLNYIPMCVFTP
LLARRIFGNS LDLNYIPMCVFTP
LLARRIFGNSDKK LDLNYIPMCVFTP
Contig4075 20000 ccgcaatgatgaaGTAGGCT Intron 1 CAGcgcatacatgtac
ttcggttgacaaa<0-----[20039:20075]-0>tataatctgttcc
gtccgccccacgg ttgcctcgtccgg
TR2 394 YEYARCGISEETASKLYGEDFDVYLKEYTTLEFAAVHREKVESLRADEF
YEYARCGISEETASKLYGEDFDVYLKEYTTLEFAAVHREKVESLRADEF
YEYARCGISEETASKLYGEDFDVYLKEYTTLEFAAVHREKVESLRADEF
Contig4075 20115 tgtgctgatggagtattgggtggtcagtaacgtgggccgaggatcgggt
aaacgggtcaacccatagaatatataaacctatcctagaatagtgcaat
cacggtatgggaccagcgacttccgggcgtggtgttccggagcgctcgc
TR2 443 DVDMPPTCLSKMICKKDGTVVGLHFVGPNAGEIMQGLCMAVRKGITKEE
DVDMPPTCLSKMICKKDGTVVGLHFVGPNAGEIMQGLCMAVRKGITKEE
DVDMPPTCLSKMICKKDGTVVGLHFVGPNAGEIMQGLCMAVRKGITKEE
Contig4075 20262 gggaccatctaaataaggagggtctggcagggaacgctaggcagaaagg
atatcccgtcattgaaagcttgtattgcacgattagtgtctgagtcaaa
cccggttcgcagccggctccccgcccctcccaaggcctgtgcgaccagg
TR2 492 IDDTIGIHPTDAESFVNLTVTKKSG
IDDTIGIHPTDAESFVNLTVTKKSG
IDDTIGIHPTDAESFVNLTVTKKSG
Contig4075 20409 aggaagaccagggatgacagaaatg
taactgtaccacagttatctcaacg
tcccctccgtctgccatctcggacc
//
genewise $Name: wise2-2-0 $ (unreleased release)
This program is freely distributed under a GPL. See source directory
Copyright (c) GRL limited: portions of the code are from separate copyright
Query protein: TR3
Comp Matrix: blosum62.bla
Gap open: 12
Gap extension: 2
Start/End default
Target Sequence Contig4075
Strand: forward
Start/End (protein) default
Gene Paras: human.gf
Codon Table: codon.table
Subs error: 1e-05
Indel error: 1e-05
Model splice? model
Model codon bias? flat
Model intron bias? tied
Null model syn
Algorithm 623
genewise output
Score 1105.28 bits over entire alignment
Scores as bits over a synchronous coding model
Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info
TR3 268 YDFAVIGGGCGGLAAAKEAASLGAKTILFDYVRPSPRGTTWGLGGTCVN
YDFAVIGGGCGGLAAAKEAASLGAKTILFDYVRPSPRGTTWGLGGTCVN
YDFAVIGGGCGGLAAAKEAASLGAKTILFDYVRPSPRGTTWGLGGTCVN
Contig4075 18972 tgtggagggtggtgggagggatggaaactgtgcctccgaatgcggatga
aatcttggggggtcccaaccgtgcactttaatgcccggccggtggcgta
ccccctcatctagcctggtccgagggtatttgcttgtcatgtcctctgt
TR3 317 VGCIPKKLMHYAGILGHSSHDREALGWGNHEGPHDW-------------
VGCIPKKLMHYAGILGHSSHDREALGWGNHEGPHDW
VGCIPKKLMHYAGILGHSSHDREALGWGNHEGPHDWGRLVNVRYLC!GD
Contig4075 19119 ggtacaatactggatgcttcgcggcgtgacggccgtgccgagattt2gg
tggtcaattaacgttgaccaagactgggaaagcaagggttatgatg ga
cctcgggggcttctgccggtttggttgcctgtgctgctttcaacgt tc
TR3 353 -TLRQTVQNYIKMLNFSYRSGLMSKNVEYVNAMASLADKNTVTYTDKKG
TLRQTVQNYIKMLNFSYRSGLMSKNVEYVNAMASLADKNTVTYTDKKG
LTLRQTVQNYIKMLNFSYRSGLMSKNVEYVNAMASLADKNTVTYTDKKG
Contig4075 19265 cacccagcataaacatttctgcataaggtgagagacggaaagatagaag
tctgactaaatattatcagcgttcaataatactcgtcaaactcacaaag
gtgggcggcccggcctcccgtcggaccaccccggctctacggacccggg
TR3 401 EKHQIKAKNVLIAIGARPTIPSDVKGAWDYSITSDDLMSRKEPVGKTLI
EKHQIKAKNVLIAIGARPTIPSDVKGAWDYSITSDDLMSRKEPVGKTLI
EKHQIKAKNVLIAIGARPTIPSDVKGAWDYSITSDDLMSRKEPVGKTLI
Contig4075 19412 gaccaagaagcagaggccaacaggaggtgttaatggtaaaagcggaaca
aaaatacaatttctgcgcctcgatagcgaactccaattggaactgactt
ggtgcgcgtggctcagtccccctggtagccacctctagcgggcccgttc
TR3 450 VGGSFVALECAGFLTSMGYDVTVAVRSLILRGFDRQCADKVQELMLATG
VGGSFVALECAGFLTSMGYDVTVAVRSLILRGFDRQCADKVQELMLATG
VGGSFVALECAGFLTSMGYDVTVAVRSLILRGFDRQCADKVQELMLATG
Contig4075 19559 gggttggcgtggtcatagtggagggctcacagtgcctggagcgcatgag
tggcttctagcgttcctgaatctctgctttggtagagcaataatttccg
gctgcttggccccccggtccccccctttataccccgtgcgcggtgggtc
TR3 499 TKFKNGVVPQAITKLENGRLYIEFTDGSSDEFDTLMYATGRSVSSRMQK
TKFKNGVVPQAITKLENGRLYIEFTDGSSDEFDTLMYATGRSVSSRMQK
TKFKNGVVPQAITKLENGRLYIEFTDGSSDEFDTLMYATGRSVSSRMQK
Contig4075 19706 aataagggccgaaacgagactagtaggatggtgacatgagctgttaaca
cataagttcactcataaggtatatcaggcaatacttaccggctccgtaa
cgcgcatggacccacgtgaaccacctcctcatcgggctccttgcaggag
TR3 548 ELSDVGIKFSEYGKIIAEDGKTSVEGVYAVGDVVEGNPALAPVAVKDGE
ELSDVGIKFSEYGKIIAEDGKTSVEGVYAVGDVVEGNPALAPVAVKDGE
ELSDVGIKFSEYGKIIAEDGKTSVEGVYAVGDVVEGNPALAPVAVKDGE
Contig4075 19853 gcagggaatagtgaaaggggaatggggtggggggggacgcgcgggaggg
atgatgtatgaagattcaagacctagtactgattagacctcctctaaga
gcccgccaccgccactcgtcgctggcgccctcgggccttcaggctgcta
TR3 597 LLARRIFGNSDKKVGFVVSHATN-------------FTPYEYARCGISE
LLARRIFGNSDKKVGFVVSHATN FTPYEYARCGISE
LLARRIFGNSDKKVGFVVSHATNFAA!DLNYIPMCVFTPYEYARCGISE
Contig4075 20000 ccgcaatgatgaaggtggacgaatgg1gcatacatgtactgtgctgatg
ttcggttgacaaatgtttgaccatcc ataatctgttccaaacgggtca
gtccgccccacggacttcctacccat tgcctcgtccggcacggtatgg
TR3 633 ETASKLYGEDFDVYLKEYTTLEFAAVHREKVESLRADEFDVDMPPTCLS
ETASKLYGEDFDVYLKEYTTLEFAAVHREKVESLRADEFDVDMPPTCLS
ETASKLYGEDFDVYLKEYTTLEFAAVHREKVESLRADEFDVDMPPTCLS
Contig4075 20145 gagtattgggtggtcagtaacgtgggccgaggatcgggtgggaccatct
acccatagaatatataaacctatcctagaatagtgcaatatatcccgtc
gaccagcgacttccgggcgtggtgttccggagcgctcgccccggttcgc
TR3 682 KMICKKDGTVVGLHFVGPNAGEIMQGLCMAVRKGITKEEIDDTIGIHPT
KMICKKDGTVVGLHFVGPNAGEIMQGLCMAVRKGITKEEIDDTIGIHPT
KMICKKDGTVVGLHFVGPNAGEIMQGLCMAVRKGITKEEIDDTIGIHPT
Contig4075 20292 aaataaggagggtctggcagggaacgctaggcagaaaggaggaagacca
attgaaagcttgtattgcacgattagtgtctgagtcaaataactgtacc
agccggctccccgcccctcccaaggcctgtgcgaccaggtcccctccgt
TR3 731 DAESFVNLTVTKKSGLD-ITQKGCUG
DAESFVNLTVTKKSG + +GC G
DAESFVNLTVTKKSGESWVASQGCGG
Contig4075 20439 gggatgacagaaatggttggacgtgg
acagttatctcaacgacgtcgagggg
ctgccatctcggaccgagggcagtcc
//