Alineamiento de B.Bigemina contra las selenoproteínas de humano (E-value de 1)
TBLASTN 2.2.17 [Aug-26-2007]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= SPP00000038_1.0 # Protein # Eukaryotic elongation factor
(eEFSec) # Homo sapiens # Complete
(596 letters)
Database: B_bigemina.contigs.fa
4396 sequences; 19,733,690 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Contig3160 115 6e-26
Contig4149.1 111 7e-25
Contig4155 92 6e-19
Contig4117.1 69 8e-12
Contig4133 57 2e-08
Contig4055 52 6e-07
Contig3936.1 49 8e-06
Contig4180 45 6e-05
Contig4136 44 3e-04
Contig4166.0 41 0.001
Contig3606 41 0.002
Contig3954.0 39 0.007
Contig3973 30 0.22
Contig1952 33 0.32
>Contig3160
Length = 31744
Score = 115 bits (288), Expect = 6e-26, Method: Composition-based stats.
Identities = 90/326 (27%), Positives = 152/326 (46%), Gaps = 23/326 (7%)
Frame = -1
Query: 7 NVNVGVLGHIDSGKTALARALSTTA----------STAAFDKQPQSRERGITLDLGFSCF 56
++N+G +GHID GKT L AL++ S D P+ + RGIT++
Sbjct: 15466 HINIGTIGHIDHGKTTLTSALTSVLKAKGLAKKAHSYEEIDSAPEEKSRGITIN------ 15305
Query: 57 SVPLPARLRSSLPEFQAAPEAEPEPGEPLLQVTLVDCPGHASLIRTIIGGAQIIDLMMLV 116
+ E++++ L +DCPGHA I+ +I GA +D +LV
Sbjct: 15304 ---------TKHVEYESS----------LRHYAHIDCPGHADYIKNMITGAVQMDGAILV 15182
Query: 117 IDVTKGMQTQSAE-CLVIGQIACQKLVVVLNKIDLLPEGKRQAAIDKMTKKMQKTLENTK 175
I +T G Q+ E L+I QI + +++ LNK D + + + I+ + +++ L
Sbjct: 15181 ISLTDGPMPQTIEHLLLIKQIGIENVIIFLNKEDKIVD---KELINFVEEEVLDILNKYN 15011
Query: 176 FRGAPIIPVAA---------KPGGPEAPETEAPQGIPELIELLTSQISIPTRDPSGPFLM 226
F+ + ++ K E + I L++ + I P RD PFLM
Sbjct: 15010 FKEDCVHFISGSALEALNIVKNSNKVDFENIWIKKILNLVDCIDKYIPTPDRDLVKPFLM 14831
Query: 227 SVDHCFSIKGQGTVMTGTILSGSISLGDSVEIPALKVVK--KVKSMQMFHMPITSAMQGD 284
V+ FSI G+G V TG I G++ +GD +E+ K V +++MF+ + GD
Sbjct: 14830 PVEDSFSITGRGIVATGKIERGNVQIGDKLELLGHDSSKMTSVLNIEMFNKSLNKGESGD 14651
Query: 285 RLGICVTQFDPKLLERGLVCA-PESL 309
+GI + + ++RG + A PES+
Sbjct: 14650 NVGILLRGINKTDIKRGYILAVPESV 14573
>Contig4149.1
Length = 48505
Score = 111 bits (278), Expect = 7e-25, Method: Composition-based stats.
Identities = 90/321 (28%), Positives = 148/321 (46%), Gaps = 13/321 (4%)
Frame = -3
Query: 7 NVNVGVLGHIDSGKTALARALSTTAST---------AAFDKQPQSRERGITLDLGFSCFS 57
++N+G +GH+D GKT L AL+ + A D+ P+ R+RGIT++
Sbjct: 9458 HLNIGTIGHVDHGKTTLTAALTKVCAMDGHGEYTPYEAIDRAPEERKRGITIN------- 9300
Query: 58 VPLPARLRSSLPEFQAAPEAEPEPGEPLLQVTLVDCPGHASLIRTIIGGAQIIDLMMLVI 117
S+ E++ VDCPGHA ++ +I GA +D +LV+
Sbjct: 9299 --------STHVEYETQNR----------HYGHVDCPGHADYVKNMISGAAQMDGAILVV 9174
Query: 118 DVTKGMQTQSAE-CLVIGQIACQKLVVVLNKIDLLPEGKRQAAIDKMTKKMQKTLENTKF 176
G Q+ E L+ QI +LVV LNK+D+L + + ++ +++
Sbjct: 9173 SCVDGPMPQTKEHVLLAKQIGVPRLVVFLNKLDMLEDVELLELVELEIRELLSEY-GYDG 8997
Query: 177 RGAPIIPVAAKPGGPEAPETEAPQGIPELIELLTSQISIPTRDPSGPFLMSVDHCFSIKG 236
PII +A A E E + I EL+ + + P R P L++VD +I G
Sbjct: 8996 DATPIIKGSAMKALNSAAE-EDVKPIRELLHACDTYLLTPERKSDLPLLVAVDDVLAIPG 8820
Query: 237 QGTVMTGTILSGSISLGDSVEI-PALKVVKKVKSM--QMFHMPITSAMQGDRLGICVTQF 293
+GTV+TG + G I GD++E+ K KK M +MF ++ + GD++G+ +
Sbjct: 8819 KGTVVTGRVEQGKIRCGDAIEVCGGPKSGKKTVCMGLEMFRKSLSEGIAGDQIGVLLKGV 8640
Query: 294 DPKLLERGLVCAPESLHTVHA 314
+ERG V + H+
Sbjct: 8639 KRDEVERGFVLIQPGTYKCHS 8577
>Contig4155
Length = 58573
Score = 92.0 bits (227), Expect = 6e-19, Method: Composition-based stats.
Identities = 80/277 (28%), Positives = 134/277 (48%), Gaps = 23/277 (8%)
Frame = -3
Query: 4 RRVNVNVGVLGHIDSGKTALARALSTTASTAAFDKQPQSRERGITLDLGFSCFSV----- 58
R+ +N+G +GH+ GK+ + ALS T F + +ER IT+ LG++ +
Sbjct: 26675 RQATINIGTIGHVAHGKSTVVHALSGV-HTVRFKHE---KERNITIKLGYANAKIYKCTN 26508
Query: 59 ---PLPARLRSSLPEFQAAPEAEPEPG-----EPLLQVTLVDCPGHASLIRTIIGGAQII 110
P P +S + P P PG E V+ VDCPGH L+ T++ GA ++
Sbjct: 26507 PECPAPDCYKSYGSSKEDEPPC-PRPGCGHKMELKRHVSFVDCPGHDILMATMLNGAAVM 26331
Query: 111 DLMMLVIDVTKGM-QTQSAECLVIGQIACQKLVVVL-NKIDLLPEGKRQAAIDKMTKKMQ 168
D +L++ + Q Q++E L +I K +++L NK++L+ E + AI + ++++
Sbjct: 26330 DAALLLVAGNESCPQPQTSEHLAAVEIMRLKNIIILQNKVELIKESQ---AIQRQ-EEIK 26163
Query: 169 KTLENTKFRGAPIIPVAAKPGGPEAPETEAPQGIPELIELLTSQISIPTRDPSGPFLMSV 228
+ + T APIIP++A I + E L +Q+++P RD P M V
Sbjct: 26162 RFVSGTAADNAPIIPISAVLN----------YNIDVICEYLVTQVAVPKRDFVLPPQMIV 26013
Query: 229 DHCFSIKG--------QGTVMTGTILSGSISLGDSVE 257
F + QG V G+IL G + +GD +E
Sbjct: 26012 IRSFDVNKPGELVENLQGGVAGGSILHGVLKVGDQIE 25902
>Contig4117.1
Length = 14601
Score = 68.6 bits (166), Expect = 8e-12, Method: Composition-based stats.
Identities = 85/394 (21%), Positives = 148/394 (37%), Gaps = 46/394 (11%)
Frame = +2
Query: 1 MAGRRVNVNVGVLGHIDSGKTALARAL------------------STTASTAAF------ 36
M + ++N+ V+GH+DSGK+ L ST +F
Sbjct: 2198 MPKEKTHINLVVIGHVDSGKSTTTGHLIYKLGGIDKRTIEKFEKESTDMGKGSFKYAWVL 2377
Query: 37 DKQPQSRERGITLDLGFSCFSVPLPARLRSSLPEFQAAPEAEPEPGEPLLQVTLVDCPGH 96
DK RERGIT+D+ +L +F+ T++D PGH
Sbjct: 2378 DKLKSERERGITIDI---------------TLWKFETGK----------YYYTVIDAPGH 2482
Query: 97 ASLIRTIIGGAQIIDLMMLVIDVTKG-------MQTQSAE-CLVIGQIACQKLVVVLNKI 148
I+ +I G D+ MLV+ G + Q+ E L+ + ++++ +NK+
Sbjct: 2483 RDFIKNMITGTSQADVAMLVVPAEAGGFEAAFSKEGQTREHALLAFTLGVKQIICAINKM 2662
Query: 149 DLLPEGKRQAAIDKMTKKMQKTLENTKFRGAPIIPVAAKPGGPEAPETEAPQGIP----- 203
D ++ ++ K++Q L+ + +P A G E +P
Sbjct: 2663 DKC--DYKEDRYSEIQKEVQGYLKKVGY-NIEKVPFVAISGFMGDNMVERSTNMPWYKGK 2833
Query: 204 ELIELLTSQISIPTRDPSGPFLMSVDHCFSIKGQGTVMTGTILSGSISLGDSVEIPALKV 263
L+E L + P R P + + + I G GTV G + +G + G + +
Sbjct: 2834 TLVEAL-DMMEPPKRPVDKPLRLPLQGVYKIGGIGTVPVGRVETGQLKAGMVLTFAPNPI 3010
Query: 264 VKKVKSMQMFHMPITSAMQGDRLGICVTQFDPKLLERGLVCAPESLHTVHAALISVEKIP 323
+ KS++M H I A GD +G V + G V + AA+ ++
Sbjct: 3011 TTECKSVEMHHEVIDVASPGDNVGFNVKNVSTSDIRTGHVASDSKNDPAKAAVSFTAQVI 3190
Query: 324 YFRGPLQTKAKF---------HITVGHETVMGRL 348
P KA + HI+ + + R+
Sbjct: 3191 ILNHPGTIKAGYSPVVDCHTAHISCKFDEITSRM 3292
Score = 47.8 bits (112), Expect = 1e-05, Method: Composition-based stats.
Identities = 43/181 (23%), Positives = 72/181 (39%), Gaps = 32/181 (17%)
Frame = -3
Query: 1 MAGRRVNVNVGVLGHIDSGKTALARAL------------------STTASTAAF------ 36
M + ++N+ V+GH+DSGK+ L ST +F
Sbjct: 772 MPKEKTHINLVVIGHVDSGKSTTTGHLIYKLGGIDKRTIEKFEKESTDMGKGSFKYAWVL 593
Query: 37 DKQPQSRERGITLDLGFSCFSVPLPARLRSSLPEFQAAPEAEPEPGEPLLQVTLVDCPGH 96
DK RERGIT+D+ +L +F+ T++D PGH
Sbjct: 592 DKLKSERERGITIDI---------------TLWKFETGK----------YYYTVIDAPGH 488
Query: 97 ASLIRTIIGGAQIIDLMMLVIDVTKG-------MQTQSAE-CLVIGQIACQKLVVVLNKI 148
I+ +I G D+ MLV+ G + Q+ E L+ + ++++ +NK+
Sbjct: 487 RDFIKNMITGTSQADVAMLVVPAEAGGFEAAFSKEGQTREHALLAFTLGVKQIICAINKM 308
Query: 149 D 149
D
Sbjct: 307 D 305
>Contig4133
Length = 40823
Score = 57.4 bits (137), Expect = 2e-08, Method: Composition-based stats.
Identities = 79/296 (26%), Positives = 122/296 (41%), Gaps = 37/296 (12%)
Frame = -2
Query: 12 VLGHIDSGKTALARALSTTASTAAFDKQPQSRERGITLDLGFSCFSVPLPARLRSSL-PE 70
VLGH+D+GKT L + + A GIT +G + F + + + PE
Sbjct: 16177 VLGHVDTGKTKLLDKIRHSNVQNA-------EAGGITQQIGATFFPKEMLNKHCDMVNPE 16019
Query: 71 FQAAPEAEPEPGEPLLQVTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAEC 130
F+ PG + ++D PGH S G+ + D+ +LV+D+ G++ Q+ E
Sbjct: 16018 FKVK-----SPG-----LLIIDTPGHESFNNLRARGSSLCDIAVLVVDIMHGLEPQTIES 15869
Query: 131 LVIGQIACQK--LVVVLNKIDLL------PEGKRQAAIDKM-----------TKKMQKTL 171
IG + +K V+ LNKID L P DK KK+ L
Sbjct: 15868 --IGLLRARKCYFVIALNKIDRLYKWEPTPWATFHKTFDKQLDHTKAEFFERAKKIMLEL 15695
Query: 172 E----NTKF--------RGAPIIPVAAKPGGPEAPETEAPQGIPELIEL---LTSQISIP 216
N++F R I P +A G +GI +LI L LT +I +
Sbjct: 15694 SEQGLNSEFYWENDDVRRNISICPTSAITG----------EGISDLICLMLQLTQKIMVK 15545
Query: 217 TRDPSGPFLMSVDHCFSIKGQGTVMTGTILSGSISLGDSVEIPALK--VVKKVKSM 270
F SV I+G GT + +L G+I GD V + L +V ++++
Sbjct: 15544 NITHKEEFHCSVLEVKVIEGLGTTVDVILLGGTIREGDKVVLCGLSGPIVTTIRTL 15377
>Contig4055
Length = 39951
Score = 52.4 bits (124), Expect = 6e-07, Method: Composition-based stats.
Identities = 80/376 (21%), Positives = 151/376 (40%), Gaps = 35/376 (9%)
Frame = +3
Query: 5 RVNVNVGVLGHIDSGK-TALARALSTTA-----STAAFDKQPQSRERGITLDLGFSCFSV 58
R ++N+ +GHID+GK T L T + ++++ + R R + F F +
Sbjct: 27363 RQHLNIVFIGHIDAGKSTTCGNILYLTGYVDERTIEKYEREAKDRNR----ESWFLAFIM 27530
Query: 59 PLPARLRSSLPEFQAAPEAEPEPGEPLLQVTLVDCPGHASLIRTIIGGAQIIDLMMLVID 118
R + +A E + T++D PGH + + +I GA D +L++
Sbjct: 27531 DTNEEERQKGKTVEVG-QARIETANK--RFTILDAPGHKNYVPNMISGATQADCGVLILS 27701
Query: 119 VTKGM---------QTQSAECLVIGQIACQKLVVVLNKIDLLPEGKRQAAIDKMTKKMQK 169
KG QT+ L+ + L+V +NK+D +A +++ +K++
Sbjct: 27702 ARKGEFETGFDRGGQTRE-HTLLAKTLGVSHLIVAVNKMDDHTCDWSEARYNEVVQKLRP 27878
Query: 170 TLENTKF---RGAPIIPVAAKPG-------------GPEAPETEAPQGIPELIELLTSQI 213
L+ F R +P++ G G + PQ +P L +LL I
Sbjct: 27879 FLKTCGFVEGRNLNFLPISGLVGQNLMHHVSDPSYKGYCPKASWYPQTMPTLFQLLDG-I 28055
Query: 214 SIPTRDPSGPFLMSVDHCFSIKGQGTVMTGTILSGSISLGDSVEIPALKVVKKVKSMQMF 273
D + V + + G + G + SG+++ G + + KV KV+++
Sbjct: 28056 DTAVFDDKAALRIPVTGAY--RDNGVICMGKVESGTVTSGQTCIVMPHKVKVKVQNVLFD 28229
Query: 274 HMPITSAMQGDRLGICVTQFDPKLLERG-LVC---APESLHTVHAALISVEKIPYFRGPL 329
A G+ + + + D + +G +VC P + T A++ + + R PL
Sbjct: 28230 EEEFAYAKPGENIRLRIVGLDEDQISKGAIVCDVDRPCPVVTEFIAMVQIIDLLEHR-PL 28406
Query: 330 QTKAKFHITVGHETVM 345
T F + H V+
Sbjct: 28407 ITSGYFCVMHAHSVVV 28454
>Contig3936.1
Length = 10689
Score = 48.5 bits (114), Expect = 8e-06, Method: Composition-based stats.
Identities = 40/153 (26%), Positives = 65/153 (42%), Gaps = 10/153 (6%)
Frame = +2
Query: 9 NVGVLGHIDSGKTALARALSTTASTAA---------FDKQPQSRERGITL-DLGFSCFSV 58
NV L H+D GKT L+ +L ++ + D + + R IT+ S
Sbjct: 4418 NVCFLAHVDHGKTTLSDSLISSVGIISERLSGKLRYLDNRDDEQRRMITIKSSSISLIYS 4597
Query: 59 PLPARLRSSLPEFQAAPEAEPEPGEPLLQVTLVDCPGHASLIRTIIGGAQIIDLMMLVID 118
P +R+ A+ P + + LVDCPGH + A++ D +L++D
Sbjct: 4598 PNNPTVRTG--------SAKALNDSPCI-INLVDCPGHVDFSVEVSTAARLCDGALLIVD 4750
Query: 119 VTKGMQTQSAECLVIGQIACQKLVVVLNKIDLL 151
+G+ Q+ L + +VLNKID L
Sbjct: 4751 AVEGICPQTKAVLRQAWRESVRTALVLNKIDKL 4849
>Contig4180
Length = 166360
Score = 45.4 bits (106), Expect = 6e-05, Method: Composition-based stats.
Identities = 59/227 (25%), Positives = 93/227 (40%), Gaps = 29/227 (12%)
Frame = +2
Query: 9 NVGVLGHIDSGKTALA-RALSTTASTAA-------------FDKQPQSRERGITLDLGFS 54
N+G+ HIDSGKT L R L + AA D RERGIT
Sbjct: 95402 NIGISAHIDSGKTTLTERILFYSGRIAAIHEVRGNDGVGAKMDSMDLERERGIT------ 95563
Query: 55 CFSVPLPARLRSSLPEFQAAPEAEPEPGEPLLQVTLVDCPGHASLIRTIIGGAQIIDLMM 114
++S++ F+ + E V ++D PGH + +++D +
Sbjct: 95564 ---------IQSAVTNFRWSVEGAAGESSVDYMVNIIDTPGHVDFTIEVERALRVLDGAI 95716
Query: 115 LVIDVTKGMQTQSAECLVIGQIACQKL--VVVLNKID---LLPEG-----KRQAAIDKMT 164
L+ G+Q+Q+ V Q+ K+ +V LNK+D PE +++ ID +
Sbjct: 95717 LLCCAVAGVQSQTLT--VNMQMDRYKIPRIVFLNKMDRDGADPERVIGLIRQKLNIDLLE 95890
Query: 165 KKMQKTLENTKFRG-APIIPVAA----KPGGPEAPETEAPQGIPELI 206
++ L N +F G +I A P G + E P G EL+
Sbjct: 95891 LQVPIGLAN-RFEGVVDVIDECAYHFEGPNGQHVVKKEVPDGYAELL 96028
>Contig4136
Length = 67380
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 67/271 (24%), Positives = 102/271 (37%), Gaps = 21/271 (7%)
Frame = +2
Query: 9 NVGVLGHIDSGKTALARAL-----STTASTAAFDKQPQSRERGITLDLGFSCFSVPLPAR 63
NV V+ H+D GKT L L + A D +ERGIT+ C V R
Sbjct: 20948 NVAVVAHVDHGKTTLVDGLLRCSGEQLTHSRAMDSHELEKERGITI-----CSKV---TR 21103
Query: 64 LRSSLPEFQAAPEAEPEPGEPLLQVTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGM 123
+ S F +VD PGHA + I+D + L++D+ +G
Sbjct: 21104 VEWSGHTFN-----------------IVDTPGHADFGGEVERILNIVDCVCLLVDIVEGP 21232
Query: 124 QTQSAECLVIG-QIACQKLVVVLNKIDLLPEGKRQAAIDKMTKKMQKTLENTKFR----- 177
+ Q+ L + K VVV+NK D+ K + +EN F
Sbjct: 21233 KPQTTFVLRKALENPDLKAVVVVNK------------CDRDCNKTRSDIENELFELFVDC 21376
Query: 178 GA-------PIIPVAAKPGGPEAP---ETEAPQGIPELIELLTSQISIPTRDPSGPFLMS 227
GA PI+ +AK + + G +++E L+ P F +
Sbjct: 21377 GASDEQLEFPILFASAKENWVSSSYPVDRHQVSGTSKILECLSHVAPSPKVSKHTNFTLQ 21556
Query: 228 VDHCFSIKGQGTVMTGTILSGSISLGDSVEI 258
V + ++TG I SGSI G ++ I
Sbjct: 21557 VS-LLDFEEGCALITGKINSGSIQKGATLHI 21646
>Contig4166.0
Length = 90045
Score = 41.2 bits (95), Expect = 0.001, Method: Composition-based stats.
Identities = 37/141 (26%), Positives = 57/141 (40%)
Frame = +2
Query: 10 VGVLGHIDSGKTALARALSTTASTAAFDKQPQSRERGITLDLGFSCFSVPLPARLRSSLP 69
V ++GH+D GKT L L + A E G R+ L
Sbjct: 61361 VTIMGHVDHGKTTLLDTLQRSNIAAG--------ESG----------------RITQKLG 61468
Query: 70 EFQAAPEAEPEPGEPLLQVTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAE 129
F+ E P + VD PGHA+ R G + D+++LV+ G+ Q+ E
Sbjct: 61469 AFKIQLERGP--------LVFVDTPGHAAFGRMRDRGVRCADVVILVVAADDGVMPQTRE 61624
Query: 130 CLVIGQIACQKLVVVLNKIDL 150
+ + + VV +NKID+
Sbjct: 61625 AIELIRRNDLPYVVAVNKIDI 61687
>Contig3606
Length = 7804
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 32/143 (22%), Positives = 61/143 (42%), Gaps = 2/143 (1%)
Frame = +3
Query: 9 NVGVLGHIDSGKTALARALSTTASTAAFDKQPQSRERGITLDLGFSCFSVPLPARLRSSL 68
N+ V+ H+D GK+ L +L + A A +R D C ++ +S+
Sbjct: 3705 NMSVIAHVDHGKSTLTDSLVSKAGIIAAKNAGDARFTDTRADEQERCITI------KSTG 3866
Query: 69 PEFQAAPEAEPEPGEPLLQVTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSA 128
+ + G + L+D PGH + ++ D ++V+D +G+ Q+
Sbjct: 3867 ISMYFEHDLDDGKGMQPFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTE 4046
Query: 129 ECLVIGQIACQKLVVVL--NKID 149
V+ Q +++ VL NK+D
Sbjct: 4047 T--VLRQALGERIRPVLHVNKVD 4109
>Contig3954.0
Length = 18229
Score = 38.9 bits (89), Expect = 0.007, Method: Composition-based stats.
Identities = 41/212 (19%), Positives = 88/212 (41%), Gaps = 30/212 (14%)
Frame = +1
Query: 8 VNVGVLGHIDSGKTALAR-------ALSTTASTAAF----DKQPQSRERGITLD--LGFS 54
+NV V G +D GK+ L A+ + + F D+ R RGIT+D +
Sbjct: 7465 LNVVVCGRVDVGKSTLLGHLLTLLGAVESRSLRGEFAWILDQGEDERSRGITIDPTKASA 7644
Query: 55 CFSVPLPARLRSSLPEFQAAPEAEPEPGE----PL--------LQVTLVDCPGHASLIRT 102
V P S ++ P PG P+ +++ +D PGH L+ +
Sbjct: 7645 VVDVVPPPEADGSGSRDGTVRQSAPAPGTDAVAPVPAPSTNRRVKLNFIDTPGHHELVSS 7824
Query: 103 IIGGAQIIDLMMLVIDVTKGMQTQS-----AECLVIGQIACQKLVVVLNKIDLLPEGKRQ 157
++ GA + ++++DV ++ + ++ + + V+ +NK+D E +
Sbjct: 7825 LVRGAIFAEAAVVIVDVLDFLKEDTNGYFEQHFFLLWSLGVRHFVICVNKVDRCAE---R 7995
Query: 158 AAIDKMTKKMQKTLENTKFRGAPIIPVAAKPG 189
+++K + ++ + + ++P + G
Sbjct: 7996 ESVEKAMRMARERVSSYALSTLLVVPTSGMSG 8091
>Contig3973
Length = 13702
Score = 29.6 bits (65), Expect(2) = 0.22, Method: Composition-based stats.
Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
Frame = -2
Query: 23 LARALSTTASTAAFDKQPQSRERGITLD-LGFSCFSVPLPARLRSSLPEFQAAPEAEPEP 81
L A++ A A D PQ RERGIT+ +CF + +F
Sbjct: 1902 LLMAMTLHAGEAIMDYMPQERERGITITAAATTCF-------WKGGYRKF---------- 1774
Query: 82 GEPLLQVTLVDCPGH 96
P ++ ++D PGH
Sbjct: 1773 --PQHRINIIDTPGH 1735
Score = 22.7 bits (47), Expect(2) = 0.22, Method: Composition-based stats.
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = -1
Query: 11 GVLGHIDSGKT 21
G++ HID+GKT
Sbjct: 2008 GIIAHIDAGKT 1976
>Contig1952
Length = 1492
Score = 33.1 bits (74), Expect = 0.32, Method: Composition-based stats.
Identities = 24/134 (17%), Positives = 60/134 (44%), Gaps = 5/134 (3%)
Frame = -1
Query: 61 PARLRSSLPEFQAAPEAEPEPGEPLLQVTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVT 120
PAR R L ++Q P +++ +D PGH L+ + + GA + ++++DV
Sbjct: 1231 PARKRMRLLQYQL-PFXNRR-----VKLNFIDTPGHHELVSSWVRGAIFAEAAVVIVDVL 1070
Query: 121 KGMQTQS-----AECLVIGQIACQKLVVVLNKIDLLPEGKRQAAIDKMTKKMQKTLENTK 175
++ + ++ + + V+ +NK+D E + +++K + ++ + +
Sbjct: 1069 DFLKEDTNGYFEQHFFLLWSLGVRHFVICVNKVDRCAE---RESVEKAMRMARERVSSYA 899
Query: 176 FRGAPIIPVAAKPG 189
++P + G
Sbjct: 898 LSTLLVVPTSGMSG 857
TBLASTN 2.2.17 [Aug-26-2007]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= SPP00000004_1.0 # Protein # Glutathione peroxidase 1 (GPx1) #
Homo sapiens # Complete
(203 letters)
Database: B_bigemina.contigs.fa
4396 sequences; 19,733,690 total letters
Searching..................................................done
***** No hits found ******
TBLASTN 2.2.17 [Aug-26-2007]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= SPP00000005_1.0 # Protein # Glutathione peroxidase 2 (GPx2) #
Homo sapiens # Complete
(190 letters)
Database: B_bigemina.contigs.fa
4396 sequences; 19,733,690 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Contig2766 33 0.076
>Contig2766
Length = 9629
Score = 33.1 bits (74), Expect = 0.076, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 29/71 (40%)
Frame = +3
Query: 54 QCRFPRRLVVLGFPCNQFGHQENCQNEEILNSLKYVRPGGGYQPTFTLVQKCEVNGQNEH 113
QCR+ R + CN+ ++E P G QP KC+VN Q
Sbjct: 5316 QCRYGRDIPTTKSQCNEHSNEE---------------PNG--QP------KCQVNCQPTS 5426
Query: 114 PVFAYLKDKLP 124
P+ YL D LP
Sbjct: 5427 PLMLYLSDSLP 5459
TBLASTN 2.2.17 [Aug-26-2007]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= SPP00000006_1.0 # Protein # Glutathione peroxidase 3 (GPx3) #
Homo sapiens # Complete
(226 letters)
Database: B_bigemina.contigs.fa
4396 sequences; 19,733,690 total letters
Searching..................................................done
***** No hits found ******
TBLASTN 2.2.17 [Aug-26-2007]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= SPP00000007_1.0 # Protein # Glutathione peroxidase 4 (GPx4) #
Homo sapiens # Complete
(197 letters)
Database: B_bigemina.contigs.fa
4396 sequences; 19,733,690 total letters
Searching..................................................done
***** No hits found ******
TBLASTN 2.2.17 [Aug-26-2007]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= SPP00000008_1.0 # Protein # Glutathione peroxidase 5 (GPx5) #
Homo sapiens # Complete
(221 letters)
Database: B_bigemina.contigs.fa
4396 sequences; 19,733,690 total letters
Searching..................................................done
***** No hits found ******
TBLASTN 2.2.17 [Aug-26-2007]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= SPP00000009_1.0 # Protein # Glutathione peroxidase 6 (GPx6) #
Homo sapiens # Complete
(221 letters)
Database: B_bigemina.contigs.fa
4396 sequences; 19,733,690 total letters
Searching..................................................done
***** No hits found ******
TBLASTN 2.2.17 [Aug-26-2007]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= SPP00000010_1.0 # Protein # Glutathione peroxidase 7 (GPx7) #
Homo sapiens # Complete
(187 letters)
Database: B_bigemina.contigs.fa
4396 sequences; 19,733,690 total letters
Searching..................................................done
***** No hits found ******
TBLASTN 2.2.17 [Aug-26-2007]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= SPP00000011_1.0 # Protein # Glutathione peroxidase 8 (GPx8) #
Homo sapiens # Complete
(209 letters)
Database: B_bigemina.contigs.fa
4396 sequences; 19,733,690 total letters
Searching..................................................done
***** No hits found ******
TBLASTN 2.2.17 [Aug-26-2007]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= SPP00000001_1.0 # Protein # Iodothyronine deiodinase 1 (DI1) #
Homo sapiens # Complete
(249 letters)
Database: B_bigemina.contigs.fa
4396 sequences; 19,733,690 total letters
Searching..................................................done
***** No hits found ******
TBLASTN 2.2.17 [Aug-26-2007]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= SPP00000002_1.0 # Protein # Iodothyronine deiodinase 2 (DI2) #
Homo sapiens # Complete
(265 letters)
Database: B_bigemina.contigs.fa
4396 sequences; 19,733,690 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Contig2984 30 0.98
>Contig2984
Length = 4517
Score = 30.0 bits (66), Expect = 0.98, Method: Composition-based stats.
Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 7/61 (11%)
Frame = -2
Query: 94 GGDNSGNGTQEKIAEGAT-------CHLLDFASPERPLVVNFGSATUPPFTSQLPAFRKL 146
G D+SG G+ + + T CH D ++ + ++++ S PPF + LP +
Sbjct: 520 GSDDSGYGSDDMVTAAMTWSRQR*HCHGSDDSNDQVVIIIHSTSLHNPPFIAPLPTLHRS 341
Query: 147 V 147
+
Sbjct: 340 I 338
TBLASTN 2.2.17 [Aug-26-2007]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= SPP00000003_1.0 # Protein # Iodothyronine deiodinase 3 (DI3) #
Homo sapiens # Complete
(278 letters)
Database: B_bigemina.contigs.fa
4396 sequences; 19,733,690 total letters
Searching..................................................done
***** No hits found ******
TBLASTN 2.2.17 [Aug-26-2007]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= SPP00000012_1.0 # Protein # Methionine sulfoxide reductase A
(MsrA) # Homo sapiens # Complete
(235 letters)
Database: B_bigemina.contigs.fa
4396 sequences; 19,733,690 total letters
Searching..................................................done
***** No hits found ******
TBLASTN 2.2.17 [Aug-26-2007]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= SPP00000037_1.0 # Protein # SECIS binding protein 2 (SBP2) #
Homo sapiens # Complete
(854 letters)
Database: B_bigemina.contigs.fa
4396 sequences; 19,733,690 total letters
Searching..................................................done
***** No hits found ******
TBLASTN 2.2.17 [Aug-26-2007]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= SPP00000032_1.0 # Protein # Selenophosphate synthetase 1 (SPS1)
# Homo sapiens # Complete
(392 letters)
Database: B_bigemina.contigs.fa
4396 sequences; 19,733,690 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Contig3973 33 0.32
>Contig3973
Length = 13702
Score = 32.7 bits (73), Expect = 0.32, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Frame = -3
Query: 202 PLGTQVAVAVHQWLDIPEKWNKIKLVVTQEDVELAYQEAM 241
P+G Q+ +HQ D+P K+K V+ Q+D+E+ Y E +
Sbjct: 10361 PMGQQIVNYIHQRNDVPFPHVKLKNVI-QQDIEIVYYENL 10245
TBLASTN 2.2.17 [Aug-26-2007]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= SPP00000033_1.0 # Protein # Selenophosphate synthetase 2 (SPS2)
# Homo sapiens # Complete
(448 letters)
Database: B_bigemina.contigs.fa
4396 sequences; 19,733,690 total letters
Searching..................................................done
***** No hits found ******
TBLASTN 2.2.17 [Aug-26-2007]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= SPP00000013_1.0 # Protein # Selenoprotein 15 (Sel15) # Homo
sapiens # Complete
(124 letters)
Database: B_bigemina.contigs.fa
4396 sequences; 19,733,690 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Contig4131.0 28 0.94
Contig2791 28 1.00
>Contig4131.0
Length = 48526
Score = 28.1 bits (61), Expect = 0.94, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -2
Query: 46 FSSNLLCSSCDLLGQFNLLQLDPDCRGCCQEEAQ 79
F+SN C L + +L D DC G CQE A+
Sbjct: 38145 FNSNTSCEDAIELQRMAMLNEDRDCYGHCQEFAR 38044
>Contig2791
Length = 1817
Score = 28.1 bits (61), Expect = 1.00, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +3
Query: 46 FSSNLLCSSCDLLGQFNLLQLDPDCRGCCQEEAQ 79
F+SN C L + +L D DC G CQE A+
Sbjct: 996 FNSNTSCEDAIELQRMAMLNEDRDCYGHCQEFAR 1097
TBLASTN 2.2.17 [Aug-26-2007]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= SPP00000014_1.0 # Protein # Selenoprotein H (SelH) # Homo
sapiens # Complete
(122 letters)
Database: B_bigemina.contigs.fa
4396 sequences; 19,733,690 total letters
Searching..................................................done
***** No hits found ******
TBLASTN 2.2.17 [Aug-26-2007]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= SPP00000015_1.0 # Protein # Selenoprotein I (SelI) # Homo
sapiens # Complete
(397 letters)
Database: B_bigemina.contigs.fa
4396 sequences; 19,733,690 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Contig4096 49 3e-06
>Contig4096
Length = 56293
Score = 49.3 bits (116), Expect = 3e-06, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 7/88 (7%)
Frame = +1
Query: 100 AYTLDGVDGKQARRTNSSTPLGELFDHGLDSWSCVYFVVTVYSIFGRGSTGVSVFVLYLL 159
A T DG+DGKQAR+ S+PLG+L DHGLD+ V++ +++ G T F+ LL
Sbjct: 46102 AQTFDGIDGKQARKLGMSSPLGQLLDHGLDAVVTVFYPYICCTLYPGGFT----FITLLL 46269
Query: 160 LWVVLFSFILSHWE-------KYNTGIL 180
+ + + + W +Y G+L
Sbjct: 46270 VAIAPIHVLCTVWRESEFETFEYTNGVL 46353
TBLASTN 2.2.17 [Aug-26-2007]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= SPP00000016_1.0 # Protein # Selenoprotein K (SelK) # Homo
sapiens # Complete
(94 letters)
Database: B_bigemina.contigs.fa
4396 sequences; 19,733,690 total letters
Searching..................................................done
***** No hits found ******
TBLASTN 2.2.17 [Aug-26-2007]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= SPP00000017_1.0 # Protein # Selenoprotein M (SelM) # Homo
sapiens # Complete
(145 letters)
Database: B_bigemina.contigs.fa
4396 sequences; 19,733,690 total letters
Searching..................................................done
***** No hits found ******
TBLASTN 2.2.17 [Aug-26-2007]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= SPP00000018_1.0 # Protein # Selenoprotein N (SelN) # Homo
sapiens # Complete
(590 letters)
Database: B_bigemina.contigs.fa
4396 sequences; 19,733,690 total letters
Searching..................................................done
***** No hits found ******
TBLASTN 2.2.17 [Aug-26-2007]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= SPP00000019_1.0 # Protein # Selenoprotein O (SelO) # Homo
sapiens # Complete
(669 letters)
Database: B_bigemina.contigs.fa
4396 sequences; 19,733,690 total letters
Searching..................................................done
***** No hits found ******
TBLASTN 2.2.17 [Aug-26-2007]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= SPP00000020_1.0 # Protein # Selenoprotein P (SelP) # Homo
sapiens # Complete
(381 letters)
Database: B_bigemina.contigs.fa
4396 sequences; 19,733,690 total letters
Searching..................................................done
***** No hits found ******
TBLASTN 2.2.17 [Aug-26-2007]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= SPP00000021_1.0 # Protein # Methionine-R-sufoxide reductase 1
(SelR1) # Homo sapiens # Complete
(116 letters)
Database: B_bigemina.contigs.fa
4396 sequences; 19,733,690 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Contig4165 28 0.88
>Contig4165
Length = 92729
Score = 28.1 bits (61), Expect = 0.88, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -1
Query: 30 LFSSRSKYAHSSPWPAFTETIHADSVAKRPEHNRSEALKVSC 71
L+S R A+++PW T+ +P+H R+ A KV+C
Sbjct: 11045 LYSERCDGAYTAPWTTLTQCTPHGR*DSKPKHERA-ATKVTC 10923
TBLASTN 2.2.17 [Aug-26-2007]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= SPP00000022_1.0 # Protein # Methionine-R-sufoxide reductase 2
(SelR2) # Homo sapiens # Complete
(199 letters)
Database: B_bigemina.contigs.fa
4396 sequences; 19,733,690 total letters
Searching..................................................done
***** No hits found ******
TBLASTN 2.2.17 [Aug-26-2007]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= SPP00000023_1.0 # Protein # Methionine-R-sufoxide reductase 3
(SelR3) # Homo sapiens # Complete
(192 letters)
Database: B_bigemina.contigs.fa
4396 sequences; 19,733,690 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Contig1507 30 0.91
>Contig1507
Length = 1308
Score = 29.6 bits (65), Expect = 0.91, Method: Composition-based stats.
Identities = 16/26 (61%), Positives = 18/26 (69%), Gaps = 4/26 (15%)
Frame = -1
Query: 6 TLPRPLSLCLSLCLC----LCLAAAL 27
+LPR LS CL LCLC LCL A+L
Sbjct: 501 SLPRCLSACLPLCLCASLPLCLVASL 424
TBLASTN 2.2.17 [Aug-26-2007]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= SPP00000024_1.0 # Protein # Selenoprotein S (SelS) # Homo
sapiens # Complete
(189 letters)
Database: B_bigemina.contigs.fa
4396 sequences; 19,733,690 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Contig4088 34 0.045
>Contig4088
Length = 28559
Score = 33.9 bits (76), Expect = 0.045, Method: Composition-based stats.
Identities = 27/92 (29%), Positives = 48/92 (52%), Gaps = 11/92 (11%)
Frame = -2
Query: 107 LEEEKRRQKIEMWDSMQEGKSY-KGN-AKKPQEEDSPGPSTSSVL--KRKSDRKPLRGGG 162
+E R++KI MW+++ + + +GN A+ ++ +P + S +L R++ + PL GGG
Sbjct: 304 FKELSRQKKIPMWEAVLGYQKWGEGNWAQTFLKKKNPKTAFSPLLGGSRRNPKPPLEGGG 125
Query: 163 YNPLS-------GEGGGACSWRPGRRGPSSGG 187
Y+P S G G PG G ++ G
Sbjct: 124 YSPESRPKFRVLGGSSGQYKTTPGVVGKNTKG 29
TBLASTN 2.2.17 [Aug-26-2007]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= SPP00000025_1.0 # Protein # Selenoprotein T (SelT) # Homo
sapiens # Complete
(195 letters)
Database: B_bigemina.contigs.fa
4396 sequences; 19,733,690 total letters
Searching..................................................done
***** No hits found ******
TBLASTN 2.2.17 [Aug-26-2007]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= SPP00000026_1.0 # Protein # Selenoprotein U1 (SelU1) # Homo
sapiens # Complete
(229 letters)
Database: B_bigemina.contigs.fa
4396 sequences; 19,733,690 total letters
Searching..................................................done
***** No hits found ******
TBLASTN 2.2.17 [Aug-26-2007]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= SPP00000027_1.0 # Protein # Selenoprotein U2 (SelU2) # Homo
sapiens # Complete
(226 letters)
Database: B_bigemina.contigs.fa
4396 sequences; 19,733,690 total letters
Searching..................................................done
***** No hits found ******
TBLASTN 2.2.17 [Aug-26-2007]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= SPP00000028_1.0 # Protein # Selenoprotein U3 (SelU3) # Homo
sapiens # Complete
(198 letters)
Database: B_bigemina.contigs.fa
4396 sequences; 19,733,690 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Contig1916 31 0.29
>Contig1916
Length = 4586
Score = 31.2 bits (69), Expect = 0.29, Method: Composition-based stats.
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Frame = -2
Query: 17 AVTGEAVELRSLWREHACVVAGLRRF---GCVVCRW 49
AV GE E+RS AC++AG R F C +C+W
Sbjct: 2731 AVAGER*EIRSA----ACIIAGTRYFHRQACQICKW 2636
TBLASTN 2.2.17 [Aug-26-2007]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= SPP00000029_1.0 # Protein # Selenoprotein V (SelV) # Homo
sapiens # Complete
(346 letters)
Database: B_bigemina.contigs.fa
4396 sequences; 19,733,690 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Contig4158 41 0.001
Contig4092 31 0.84
Contig4160 31 0.89
Contig4091.1 31 0.91
>Contig4158
Length = 87318
Score = 40.8 bits (94), Expect = 0.001, Method: Composition-based stats.
Identities = 31/85 (36%), Positives = 38/85 (44%), Gaps = 7/85 (8%)
Frame = +2
Query: 66 PAQIPTLVPTPALARIPRLVPPPAPAWIPTPVPTPVPVRNPTPVPTPAR-----TLTPPV 120
P ++P VP A VP P PA +P P R P +PAR T T P
Sbjct: 22391 PDRVPVQVPAAAHVH----VPAPVPARVPVSATATSPARVHVPAASPARATVSATATSPA 22558
Query: 121 R--VPAPAPAQLLAGIRAALPVLDS 143
R VPAP PA+ +R +PV S
Sbjct: 22559 RVHVPAPVPAKSAGVVRQQVPVPSS 22633
>Contig4092
Length = 35044
Score = 30.8 bits (68), Expect = 0.84, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -3
Query: 21 ASTPTRTPTPLRTPTPVRTRTPIRTLTPVLTPSP 54
++ P TP PL T P T P+ + P TP P
Sbjct: 24383 STKPAETPKPLSTTKPAETPKPLGNVKPAETPKP 24282
>Contig4160
Length = 71491
Score = 30.8 bits (68), Expect = 0.89, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = +3
Query: 7 TPAPS-SARTSTSVRASTPTRTPTPLRTPTPVRTRTPIRTLTPVLTPSPAGTSPLVLTPA 65
TP PS S ++S S + S TP P + P T T P + P+ ++ + +TP
Sbjct: 58215 TPKPSESTKSSVSAKVSV---TPKPSESAKPSETAKVSLTPKPSESAKPSESATVSVTPN 58385
Query: 66 PAQIPTLVPT 75
+ IP LV T
Sbjct: 58386 ESAIPQLVVT 58415
>Contig4091.1
Length = 11179
Score = 30.8 bits (68), Expect = 0.91, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 30/74 (40%)
Frame = +2
Query: 123 PAPAPAQLLAGIRAALPVLDSYLAPALPLDPPPEPAPELPLLPEEDPEPAPSLKLIPSVS 182
PA AP + V D+ APA ++ APE P+ E P P+ P +
Sbjct: 1418 PAEAPKETTGCCSTPEKVADTPQAPATTVEASSTGAPEKPVEMTESPAATPTSTAEPGIP 1597
Query: 183 SEAGPAPGPLPTRT 196
+ G A G T T
Sbjct: 1598 TAPGDASGLRGTST 1639
TBLASTN 2.2.17 [Aug-26-2007]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= SPP00000030_1.0 # Protein # Selenoprotein W1 (SelW1) # Homo
sapiens # Complete
(87 letters)
Database: B_bigemina.contigs.fa
4396 sequences; 19,733,690 total letters
Searching..................................................done
***** No hits found ******
TBLASTN 2.2.17 [Aug-26-2007]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= SPP00000031_1.0 # Protein # Selenoprotein W2 (SelW2) # Homo
sapiens # Complete
(115 letters)
Database: B_bigemina.contigs.fa
4396 sequences; 19,733,690 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Contig4102 30 0.27
>Contig4102
Length = 42529
Score = 29.6 bits (65), Expect = 0.27, Method: Composition-based stats.
Identities = 19/74 (25%), Positives = 32/74 (43%)
Frame = -2
Query: 38 TYLELASAVKEQYPGIEIESRLGGTGAFEIEINGQLVFSKLENGGFPYEKDLIEAIRRAS 97
+Y +L + +PG E+ + G F E G F ++ +G FP + AI+
Sbjct: 35772 SYYQLHMVHHQIHPGDELRTVSLHLGKFHQERRGVRRFHRVTHGSFPIQNPPCSAIQHLY 35593
Query: 98 NGETLEKITNSRPP 111
+ L +I R P
Sbjct: 35592 HYSNLHRIPIRRRP 35551
TBLASTN 2.2.17 [Aug-26-2007]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= SPP00000034_1.0 # Protein # Thioredoxin reductase 1 (TR1) #
Homo sapiens # Complete
(499 letters)
Database: B_bigemina.contigs.fa
4396 sequences; 19,733,690 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Contig4075 177 2e-95
Contig3884 64 4e-17
Contig4130 56 1e-11
>Contig4075
Length = 25623
Score = 177 bits (449), Expect(3) = 2e-95, Method: Composition-based stats.
Identities = 110/270 (40%), Positives = 157/270 (58%), Gaps = 5/270 (1%)
Frame = +2
Query: 103 EAVQNHIGSLNWGYRVALREKKVVYENAYGQFIGPHRIKATNNKGKEKIYSAERFLIATG 162
+ VQN+I LN+ YR L K V Y NA + + T+ KG++ A+ LIA G
Sbjct: 19277 QTVQNYIKMLNFSYRSGLMSKNVEYVNAMASLADKNTVTYTDKKGEKHQIKAKNVLIAIG 19456
Query: 163 ERPRYLGIPGDK----EYCISSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTV 218
RP IP D +Y I+SDDL S GKTL+VG S+VALECAGFL +G DVTV
Sbjct: 19457 ARPT---IPSDVKGAWDYSITSDDLMSRKEPVGKTLIVGGSFVALECAGFLTSMGYDVTV 19627
Query: 219 MVRSILLRGFDQDMANKIGEHMEEHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEE 278
VRS++LRGFD+ A+K+ E M G KF VP + ++E GRL + +S+
Sbjct: 19628 AVRSLILRGFDRQCADKVQELMLATGTKFKNGVVPQAITKLEN---GRLYIEFTDGSSD- 19795
Query: 279 IIEGEYNTVMLAIGRDACTR-KIGLETVGVKINEKTGKIPVTDEEQTNVPYIYAIGDILE 337
E++T+M A GR +R + L VG+K +E GKI + ++ +T+V +YA+GD++E
Sbjct: 19796 ----EFDTLMYATGRSVSSRMQKELSDVGIKFSE-YGKI-IAEDGKTSVEGVYAVGDVVE 19957
Query: 338 DKVELTPVAIQAGRLLAQRLYAGSTVKCDY 367
L PVA++ G LLA+R++ S K +
Sbjct: 19958 GNPALAPVAVKDGELLARRIFGNSDKKVGF 20047
Score = 110 bits (276), Expect(3) = 2e-95, Method: Composition-based stats.
Identities = 60/144 (41%), Positives = 84/144 (58%), Gaps = 14/144 (9%)
Frame = +3
Query: 362 TVKCDYENVPTTVFTPLEYGACGLSEEKAVEKFGEENIEVYHSYFWPLEWTIPSRDNNK- 420
T + D +P VFTP EY CG+SEE A + +GE+ +VY + LE+ R+ +
Sbjct: 20067 TSQLDLNYIPMCVFTPYEYARCGISEETASKLYGED-FDVYLKEYTTLEFAAVHREKVES 20243
Query: 421 -------------CYAKIICNTKDNERVVGFHVLGPNAGEVTQGFAAALKCGLTKKQLDS 467
C +K+IC K + VVG H +GPNAGE+ QG A++ G+TK+++D
Sbjct: 20244 LRADEFDVDMPPTCLSKMIC--KKDGTVVGLHFVGPNAGEIMQGLCMAVRKGITKEEIDD 20417
Query: 468 TIGIHPVCAEVFTTLSVTKRSGAS 491
TIGIHP AE F L+VTK+SG S
Sbjct: 20418 TIGIHPTDAESFVNLTVTKKSGES 20489
Score = 101 bits (252), Expect(3) = 2e-95, Method: Composition-based stats.
Identities = 54/90 (60%), Positives = 63/90 (70%)
Frame = +3
Query: 13 YDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVTPTPLGTRWGLGGTCVNVGCIPKKLMHQ 72
YD +IGGG GGLAAAKEAA G K ++ D+V P+P GT WGLGGTCVNVGCIPKKLMH
Sbjct: 18972 YDFAVIGGGCGGLAAAKEAASLGAKTILFDYVRPSPRGTTWGLGGTCVNVGCIPKKLMHY 19151
Query: 73 AALLGQALQDSRNYGWKVEETVKHDWDRMI 102
A +LG + D GW E HDW R++
Sbjct: 19152 AGILGHSSHDREALGWGNHEG-PHDWGRLV 19238
>Contig3884
Length = 22305
Score = 64.3 bits (155), Expect(2) = 4e-17, Method: Composition-based stats.
Identities = 64/254 (25%), Positives = 115/254 (45%), Gaps = 3/254 (1%)
Frame = +2
Query: 229 DQDMANKIGEHMEEHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVM 288
DQD++ I + +E+ GI+ V + + + VV N ++I E + + V+
Sbjct: 3725 DQDVSATIKKLIEKQGIE-----VSVSTKVLGGEAKEDCAVVTAEKNGQKI-EFKGDVVL 3886
Query: 289 LAIGRDACTRKIGLETVGVKINEKTGKIPVTDEEQT-NVPYIYAIGDILEDKVELTPVAI 347
LA+GR T +GLE +G+K + G I V D+ + N P I AIGD++ + L A
Sbjct: 3887 LAMGRRPFTSNLGLENLGIKT--ERGCIVVDDKLRIPNHPNISAIGDVIPGPM-LAHKAE 4057
Query: 348 QAGRLLAQRLYAGSTVKCDYENVPTTVFTPLEYGACGLSEEKAVEKFGEENIEVYHSYFW 407
+ G + + ++ +VP ++T E G S E++++ G Y +
Sbjct: 4058 EDGSVALGNILGKDLGHVNWNHVPMVIYTHPEVAGVG-STEQSLKAAGV----AYKKASF 4222
Query: 408 PLEWTIPSR--DNNKCYAKIICNTKDNERVVGFHVLGPNAGEVTQGFAAALKCGLTKKQL 465
P SR + KI+ + ++ +++G ++GP A E+ + CGLT +
Sbjct: 4223 PFAANSRSRVAGETDGFVKILAD--NDNKILGGWIIGPQASELIGQITLMMACGLTTVDV 4396
Query: 466 DSTIGIHPVCAEVF 479
HP +E
Sbjct: 4397 SKVCFAHPTISEAL 4438
Score = 41.6 bits (96), Expect(2) = 4e-17, Method: Composition-based stats.
Identities = 32/112 (28%), Positives = 59/112 (52%), Gaps = 3/112 (2%)
Frame = +1
Query: 111 SLNWGYRVALREKKVVYENAYGQFIGPHRIKATNNKGKEKIYSAERFLIATG-ERPRYLG 169
+L+ G + ++ V + + +G + P+ I+ +G EK+ +A+ +IATG E R+ G
Sbjct: 3334 TLDAGIKGLFKKNGVDFISGHGTLVAPNEIQI---EGGEKV-TAKNIIIATGSEVTRFPG 3501
Query: 170 --IPGDKEYCISSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVM 219
+ D + ISSD+ L P +V+G + LE A + +G VT++
Sbjct: 3502 DSLKIDGKRIISSDEALMLDEVPKTMVVIGGGAIGLELASVWSRLGAKVTIV 3657
Score = 55.8 bits (133), Expect = 5e-08, Method: Composition-based stats.
Identities = 29/58 (50%), Positives = 35/58 (60%)
Frame = +2
Query: 13 YDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVTPTPLGTRWGLGGTCVNVGCIPKKLM 70
YDL +IGGG GG A + AQ+G KV +D R LGGTC+NVGCIP K +
Sbjct: 2819 YDLAVIGGGPGGYTTAIKGAQHGLKVACID--------RRKTLGGTCLNVGCIPSKCL 2968
>Contig4130
Length = 53027
Score = 45.4 bits (106), Expect(2) = 1e-11, Method: Composition-based stats.
Identities = 43/157 (27%), Positives = 75/157 (47%), Gaps = 1/157 (0%)
Frame = -1
Query: 229 DQDMANKIGEHMEEHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVM 288
DQD++ I + +E+ GI+ V + + + VV N ++I E + + V+
Sbjct: 452 DQDVSATIKKLIEKQGIE-----VSVSTKVLGGEAKEDCAVVTAEKNGQKI-EFKGDVVL 291
Query: 289 LAIGRDACTRKIGLETVGVKINEKTGKIPVTDEEQT-NVPYIYAIGDILEDKVELTPVAI 347
LA+GR T +GLE +G+K + G I V D+ + N P I AIGD++ + L A
Sbjct: 290 LAMGRRPFTSNLGLENLGIKT--ERGCIVVDDKLRIPNHPNISAIGDVIPGPM-LAHKAE 120
Query: 348 QAGRLLAQRLYAGSTVKCDYENVPTTVFTPLEYGACG 384
+ G + + ++ +VP ++T E G
Sbjct: 119 EDGSVALGNILGKDLGHVNWNHVPMVIYTHPEVAGVG 9
Score = 41.6 bits (96), Expect(2) = 1e-11, Method: Composition-based stats.
Identities = 32/112 (28%), Positives = 59/112 (52%), Gaps = 3/112 (2%)
Frame = -3
Query: 111 SLNWGYRVALREKKVVYENAYGQFIGPHRIKATNNKGKEKIYSAERFLIATG-ERPRYLG 169
+L+ G + ++ V + + +G + P+ I+ +G EK+ +A+ +IATG E R+ G
Sbjct: 843 TLDAGIKGLFKKNGVDFISGHGTLVAPNEIQI---EGGEKV-TAKNIIIATGSEVTRFPG 676
Query: 170 --IPGDKEYCISSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVM 219
+ D + ISSD+ L P +V+G + LE A + +G VT++
Sbjct: 675 DSLKIDGKRIISSDEALMLDEVPKTMVVIGGGAIGLELASVWSRLGAKVTIV 520
Score = 55.8 bits (133), Expect = 5e-08, Method: Composition-based stats.
Identities = 29/58 (50%), Positives = 35/58 (60%)
Frame = -1
Query: 13 YDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVTPTPLGTRWGLGGTCVNVGCIPKKLM 70
YDL +IGGG GG A + AQ+G KV +D R LGGTC+NVGCIP K +
Sbjct: 1358 YDLAVIGGGPGGYTTAIKGAQHGLKVACID--------RRKTLGGTCLNVGCIPSKCL 1209
TBLASTN 2.2.17 [Aug-26-2007]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= SPP00000035_1.0 # Protein # Thioredoxin reductase 2 (TR2) #
Homo sapiens # Complete
(524 letters)
Database: B_bigemina.contigs.fa
4396 sequences; 19,733,690 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Contig4075 207 e-100
Contig3884 66 4e-11
Contig4130 55 1e-07
>Contig4075
Length = 25623
Score = 207 bits (528), Expect(3) = e-100, Method: Composition-based stats.
Identities = 109/260 (41%), Positives = 162/260 (62%), Gaps = 1/260 (0%)
Frame = +2
Query: 128 MAEAVQNHVKSLNWGHRVQLQDRKVKYFNIKASFVDEHTVCGVAKGGKEILLSADHIIIA 187
+ + VQN++K LN+ +R L + V+Y N AS D++TV K G++ + A +++IA
Sbjct: 19271 LRQTVQNYIKMLNFSYRSGLMSKNVEYVNAMASLADKNTVTYTDKKGEKHQIKAKNVLIA 19450
Query: 188 TGGRPRYPTHIEGALEYGITSDDIFWLKESPGKTLVVGASYVALECAGFLTGIGLDTTIM 247
G RP P+ ++GA +Y ITSDD+ KE GKTL+VG S+VALECAGFLT +G D T+
Sbjct: 19451 IGARPTIPSDVKGAWDYSITSDDLMSRKEPVGKTLIVGGSFVALECAGFLTSMGYDVTVA 19630
Query: 248 MRSIPLRGFDQQMSSMVIEHMASHGTRFLRGCAPSRVRRLPDGQLQVTWEDSTTGKEDTG 307
+RS+ LRGFD+Q + V E M + GT+F G P + +L +G+L + + D ++ +
Sbjct: 19631 VRSLILRGFDRQCADKVQELMLATGTKFKNGVVPQAITKLENGRLYIEFTDGSSDE---- 19798
Query: 308 TFDTVLWAIGRVPDTR-SLNLEKAGVDTSPDTQKILVDSREATSVPHIYAIGDVVEGRPE 366
FDT+++A GR +R L G+ S + I D + TSV +YA+GDVVEG P
Sbjct: 19799 -FDTLMYATGRSVSSRMQKELSDVGIKFSEYGKIIAEDGK--TSVEGVYAVGDVVEGNPA 19969
Query: 367 LTPIAIMAGRLLVQRLFGGS 386
L P+A+ G LL +R+FG S
Sbjct: 19970 LAPVAVKDGELLARRIFGNS 20029
Score = 99.8 bits (247), Expect(3) = e-100, Method: Composition-based stats.
Identities = 52/139 (37%), Positives = 77/139 (55%), Gaps = 14/139 (10%)
Frame = +3
Query: 390 MDYDNVPTTVFTPLEYGCVGLSEEEAVARHGQEHVEVYHAHYKPLEFTVAGRDASQ---- 445
+D + +P VFTP EY G+SEE A +G E +VY Y LEF R+ +
Sbjct: 20076 LDLNYIPMCVFTPYEYARCGISEETASKLYG-EDFDVYLKEYTTLEFAAVHREKVESLRA 20252
Query: 446 ----------CYVKMVCLREPPQLVLGLHFLGPNAGEVTQGFALGIKCGASYAQVMRTVG 495
C KM+C ++ V+GLHF+GPNAGE+ QG + ++ G + ++ T+G
Sbjct: 20253 DEFDVDMPPTCLSKMICKKD--GTVVGLHFVGPNAGEIMQGLCMAVRKGITKEEIDDTIG 20426
Query: 496 IHPTCSEEVVKLRISKRSG 514
IHPT +E V L ++K+SG
Sbjct: 20427 IHPTDAESFVNLTVTKKSG 20483
Score = 97.4 bits (241), Expect(3) = e-100, Method: Composition-based stats.
Identities = 55/89 (61%), Positives = 62/89 (69%)
Frame = +3
Query: 40 YDLLVVGGGSGGLACAKEAAQLGRKVAVVDYVEPSPQGTRWGLGGTCVNVGCIPKKLMHQ 99
YD V+GGG GGLA AKEAA LG K + DYV PSP+GT WGLGGTCVNVGCIPKKLMH
Sbjct: 18972 YDFAVIGGGCGGLAAAKEAASLGAKTILFDYVRPSPRGTTWGLGGTCVNVGCIPKKLMHY 19151
Query: 100 AALLGGLIQDAPNYGWEVAQPVPHDWRKM 128
A +LG D GW + PHDW ++
Sbjct: 19152 AGILGHSSHDREALGWGNHEG-PHDWGRL 19235
>Contig3884
Length = 22305
Score = 65.9 bits (159), Expect = 4e-11, Method: Composition-based stats.
Identities = 59/200 (29%), Positives = 91/200 (45%), Gaps = 7/200 (3%)
Frame = +2
Query: 310 DTVLWAIGRVPDTRSLNLEKAGVDTSPDTQKILVDSR-EATSVPHIYAIGDVVEGRPELT 368
D VL A+GR P T +L LE G+ T I+VD + + P+I AIGDV+ G P L
Sbjct: 3875 DVVLLAMGRRPFTSNLGLENLGIKTERGC--IVVDDKLRIPNHPNISAIGDVIPG-PMLA 4045
Query: 369 PIAIMAGRLLVQRLFGGSSDLMDYDNVPTTVFTPLEYGCVGLSEEEAVARHGQEHVEVYH 428
A G + + + G +++++VP ++T E VG +E+ ++
Sbjct: 4046 HKAEEDGSVALGNILGKDLGHVNWNHVPMVIYTHPEVAGVGSTEQS---------LKAAG 4198
Query: 429 AHYKPLEFTVAGRDASQC------YVKMVCLREPPQLVLGLHFLGPNAGEVTQGFALGIK 482
YK F A S+ +VK+ L + +LG +GP A E+ L +
Sbjct: 4199 VAYKKASFPFAANSRSRVAGETDGFVKI--LADNDNKILGGWIIGPQASELIGQITLMMA 4372
Query: 483 CGASYAQVMRTVGIHPTCSE 502
CG + V + HPT SE
Sbjct: 4373 CGLTTVDVSKVCFAHPTISE 4432
Score = 54.7 bits (130), Expect = 1e-07, Method: Composition-based stats.
Identities = 30/58 (51%), Positives = 35/58 (60%)
Frame = +2
Query: 40 YDLLVVGGGSGGLACAKEAAQLGRKVAVVDYVEPSPQGTRWGLGGTCVNVGCIPKKLM 97
YDL V+GGG GG A + AQ G KVA +D R LGGTC+NVGCIP K +
Sbjct: 2819 YDLAVIGGGPGGYTTAIKGAQHGLKVACID--------RRKTLGGTCLNVGCIPSKCL 2968
>Contig4130
Length = 53027
Score = 54.7 bits (130), Expect = 1e-07, Method: Composition-based stats.
Identities = 30/58 (51%), Positives = 35/58 (60%)
Frame = -1
Query: 40 YDLLVVGGGSGGLACAKEAAQLGRKVAVVDYVEPSPQGTRWGLGGTCVNVGCIPKKLM 97
YDL V+GGG GG A + AQ G KVA +D R LGGTC+NVGCIP K +
Sbjct: 1358 YDLAVIGGGPGGYTTAIKGAQHGLKVACID--------RRKTLGGTCLNVGCIPSKCL 1209
Score = 46.2 bits (108), Expect = 3e-05, Method: Composition-based stats.
Identities = 35/101 (34%), Positives = 53/101 (52%), Gaps = 1/101 (0%)
Frame = -1
Query: 310 DTVLWAIGRVPDTRSLNLEKAGVDTSPDTQKILVDSR-EATSVPHIYAIGDVVEGRPELT 368
D VL A+GR P T +L LE G+ T I+VD + + P+I AIGDV+ G P L
Sbjct: 302 DVVLLAMGRRPFTSNLGLENLGIKTERGC--IVVDDKLRIPNHPNISAIGDVIPG-PMLA 132
Query: 369 PIAIMAGRLLVQRLFGGSSDLMDYDNVPTTVFTPLEYGCVG 409
A G + + + G +++++VP ++T E VG
Sbjct: 131 HKAEEDGSVALGNILGKDLGHVNWNHVPMVIYTHPEVAGVG 9
TBLASTN 2.2.17 [Aug-26-2007]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= SPP00000036_1.0 # Protein # Thioredoxin reductase 3 (TR3) #
Homo sapiens # Complete
(754 letters)
Database: B_bigemina.contigs.fa
4396 sequences; 19,733,690 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Contig4075 192 8e-98
Contig3884 70 5e-12
Contig4130 49 1e-05
Contig4072 35 0.094
Contig4100.1 35 0.17
Contig505 34 0.22
Contig1333 32 0.72
Contig3285 32 0.72
Contig4178 32 0.96
Contig4132 32 0.96
>Contig4075
Length = 25623
Score = 192 bits (487), Expect(3) = 8e-98, Method: Composition-based stats.
Identities = 113/278 (40%), Positives = 165/278 (59%), Gaps = 2/278 (0%)
Frame = +2
Query: 355 TMTKAIQNHISSLNWGYRLSLREKAVAYVNSYGEFVEHHKIKATNKKGQETYYTAAQFVI 414
T+ + +QN+I LN+ YR L K V YVN+ + + + T+KKG++ A +I
Sbjct: 19268 TLRQTVQNYIKMLNFSYRSGLMSKNVEYVNAMASLADKNTVTYTDKKGEKHQIKAKNVLI 19447
Query: 415 ATGERPRYLG-IQGDKEYCITSDDLFSLPYCPGKTLVVGASYVALECAGFLAGFGLDVTV 473
A G RP ++G +Y ITSDDL S GKTL+VG S+VALECAGFL G DVTV
Sbjct: 19448 AIGARPTIPSDVKGAWDYSITSDDLMSRKEPVGKTLIVGGSFVALECAGFLTSMGYDVTV 19627
Query: 474 MVRSILLRGFDQEMAEKVGSYMEQHGVKFLRKFIPVMVQQLEKGSPGKLKVLAKSTEGTE 533
VRS++LRGFD++ A+KV M G KF +P + +LE G ++ + T+G+
Sbjct: 19628 AVRSLILRGFDRQCADKVQELMLATGTKFKNGVVPQAITKLENG-----RLYIEFTDGSS 19792
Query: 534 TIEGVYNTVLLAIGRDSCTR-KIGLEKIGVKINEKSGKIPVNDVEQTNVPYVYAVGDILE 592
++T++ A GR +R + L +G+K +E GKI D +T+V VYAVGD++E
Sbjct: 19793 D---EFDTLMYATGRSVSSRMQKELSDVGIKFSE-YGKIIAED-GKTSVEGVYAVGDVVE 19957
Query: 593 DKPELTPVAIQSGKLLAQRLFGASLEKCDYINVPTTVF 630
P L PVA++ G+LLA+R+FG S +K ++ T F
Sbjct: 19958 GNPALAPVAVKDGELLARRIFGNSDKKVGFVVSHATNF 20071
Score = 108 bits (269), Expect(3) = 8e-98, Method: Composition-based stats.
Identities = 57/134 (42%), Positives = 77/134 (57%), Gaps = 14/134 (10%)
Frame = +3
Query: 625 VPTTVFTPLEYGCCGLSEEKAIEVYKKENLEIYHTLFWPLEWTVAGREN----------- 673
+P VFTP EY CG+SEE A ++Y E+ ++Y + LE+ RE
Sbjct: 20091 IPMCVFTPYEYARCGISEETASKLYG-EDFDVYLKEYTTLEFAAVHREKVESLRADEFDV 20267
Query: 674 ---NTCYAKIICNKFDHDRVIGFHILGPNAGEVTQGFAAAMKCGLTKQLLDDTIGIHPTC 730
TC +K+IC K V+G H +GPNAGE+ QG A++ G+TK+ +DDTIGIHPT
Sbjct: 20268 DMPPTCLSKMICKK--DGTVVGLHFVGPNAGEIMQGLCMAVRKGITKEEIDDTIGIHPTD 20441
Query: 731 GEVFTTLEITKSSG 744
E F L +TK SG
Sbjct: 20442 AESFVNLTVTKKSG 20483
Score = 98.2 bits (243), Expect(3) = 8e-98, Method: Composition-based stats.
Identities = 52/86 (60%), Positives = 63/86 (73%)
Frame = +3
Query: 268 YDLIIIGGGSGGLSCAKEAAILGKKVMVLDFVVPSPQGTSWGLGGTCVNVGCIPKKLMHQ 327
YD +IGGG GGL+ AKEAA LG K ++ D+V PSP+GT+WGLGGTCVNVGCIPKKLMH
Sbjct: 18972 YDFAVIGGGCGGLAAAKEAASLGAKTILFDYVRPSPRGTTWGLGGTCVNVGCIPKKLMHY 19151
Query: 328 AALLGQALCDSRKFGWEYNQQVRHNW 353
A +LG + D GW N + H+W
Sbjct: 19152 AGILGHSSHDREALGWG-NHEGPHDW 19226
>Contig3884
Length = 22305
Score = 69.7 bits (169), Expect = 5e-12, Method: Composition-based stats.
Identities = 69/255 (27%), Positives = 117/255 (45%), Gaps = 4/255 (1%)
Frame = +2
Query: 484 DQEMAEKVGSYMEQHGVKFLRKFIPVMVQQLEKGSPGKLKVLAKSTEGTETIEGVYNTVL 543
DQ+++ + +E+ G++ + V + L + V+ G + IE + VL
Sbjct: 3725 DQDVSATIKKLIEKQGIE-----VSVSTKVLGGEAKEDCAVVTAEKNG-QKIEFKGDVVL 3886
Query: 544 LAIGRDSCTRKIGLEKIGVKINEKSGKIPVND-VEQTNVPYVYAVGDILEDKPELTPVAI 602
LA+GR T +GLE +G+K + G I V+D + N P + A+GD++ P L A
Sbjct: 3887 LAMGRRPFTSNLGLENLGIKT--ERGCIVVDDKLRIPNHPNISAIGDVIPG-PMLAHKAE 4057
Query: 603 QSGKLLAQRLFGASLEKCDYINVPTTVFTPLEYGCCGLSEE--KAIEV-YKKENLEIYHT 659
+ G + + G L ++ +VP ++T E G +E+ KA V YKK +
Sbjct: 4058 EDGSVALGNILGKDLGHVNWNHVPMVIYTHPEVAGVGSTEQSLKAAGVAYKKASFPFAAN 4237
Query: 660 LFWPLEWTVAGRENNTCYAKIICNKFDHDRVIGFHILGPNAGEVTQGFAAAMKCGLTKQL 719
VAG + + KI+ + + ++++G I+GP A E+ M CGLT
Sbjct: 4238 S----RSRVAGETDG--FVKILAD--NDNKILGGWIIGPQASELIGQITLMMACGLTTVD 4393
Query: 720 LDDTIGIHPTCGEVF 734
+ HPT E
Sbjct: 4394 VSKVCFAHPTISEAL 4438
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/58 (46%), Positives = 33/58 (56%)
Frame = +2
Query: 268 YDLIIIGGGSGGLSCAKEAAILGKKVMVLDFVVPSPQGTSWGLGGTCVNVGCIPKKLM 325
YDL +IGGG GG + A + A G KV +D LGGTC+NVGCIP K +
Sbjct: 2819 YDLAVIGGGPGGYTTAIKGAQHGLKVACID--------RRKTLGGTCLNVGCIPSKCL 2968
>Contig4130
Length = 53027
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 42/157 (26%), Positives = 75/157 (47%), Gaps = 1/157 (0%)
Frame = -1
Query: 484 DQEMAEKVGSYMEQHGVKFLRKFIPVMVQQLEKGSPGKLKVLAKSTEGTETIEGVYNTVL 543
DQ+++ + +E+ G++ + V + L + V+ G + IE + VL
Sbjct: 452 DQDVSATIKKLIEKQGIE-----VSVSTKVLGGEAKEDCAVVTAEKNG-QKIEFKGDVVL 291
Query: 544 LAIGRDSCTRKIGLEKIGVKINEKSGKIPVND-VEQTNVPYVYAVGDILEDKPELTPVAI 602
LA+GR T +GLE +G+K + G I V+D + N P + A+GD++ P L A
Sbjct: 290 LAMGRRPFTSNLGLENLGIKT--ERGCIVVDDKLRIPNHPNISAIGDVIPG-PMLAHKAE 120
Query: 603 QSGKLLAQRLFGASLEKCDYINVPTTVFTPLEYGCCG 639
+ G + + G L ++ +VP ++T E G
Sbjct: 119 EDGSVALGNILGKDLGHVNWNHVPMVIYTHPEVAGVG 9
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/58 (46%), Positives = 33/58 (56%)
Frame = -1
Query: 268 YDLIIIGGGSGGLSCAKEAAILGKKVMVLDFVVPSPQGTSWGLGGTCVNVGCIPKKLM 325
YDL +IGGG GG + A + A G KV +D LGGTC+NVGCIP K +
Sbjct: 1358 YDLAVIGGGPGGYTTAIKGAQHGLKVACID--------RRKTLGGTCLNVGCIPSKCL 1209
>Contig4072
Length = 50453
Score = 35.4 bits (80), Expect = 0.094, Method: Composition-based stats.
Identities = 30/85 (35%), Positives = 36/85 (42%), Gaps = 28/85 (32%)
Frame = +2
Query: 97 RFVSRPGRARSESETLERSPPQSPG--PGKAGDAPNRRSG-----------HVRGARV-- 141
R + RPG AR E + P Q PG PG+A A RRSG + RG V
Sbjct: 24458 RRIWRPGEARLAGE---KYPAQGPGRGPGEAAGADRRRSGRYRPQQKAAETYARGMTVTA 24628
Query: 142 -------------LSPPGRRARLSS 153
+SPP RR RLS+
Sbjct: 24629 VRRRRETRRTAGRVSPPARRPRLSA 24703
>Contig4100.1
Length = 40200
Score = 34.7 bits (78), Expect = 0.17, Method: Composition-based stats.
Identities = 43/193 (22%), Positives = 72/193 (37%), Gaps = 5/193 (2%)
Frame = +3
Query: 47 AGDPISHARGGVGGRGERLPRGFARVVRVASEGSVR---RPSGPVPAPQPPAFRFVSRPG 103
GD ++ + V RG RV +G V R +G V +P P+F PG
Sbjct: 14535 GGDGVTDRKQDVNTRG--------RVNTEEQQGGVANMLRSTGIVLSPSEPSFTL--NPG 14684
Query: 104 RARSESETLERSPPQSPGPGKAGDAPNRRSGHV--RGARVLSPPGRRARLSSPGPSRSSE 161
R RS + TL +P GD+ R+ + R ++P R S G ++
Sbjct: 14685 RQRSTNPTLSGKSASAPNSDAFGDSEGTRAATIAQRDPAAIAPSSTRDNSSGDGLRETAS 14864
Query: 162 AREELRRHLVGLIERSRVVIFSKSYCPHSTRVKELFSSLGVECNVLELDQVDDGARVQEV 221
R G S V+ S + + V + G ++ D + G +
Sbjct: 14865 QRG-------GDSSVSSVMPISSRFPDNENSVLNTQTPKGPSVQLITSDTIRQGGTGSKP 15023
Query: 222 LSEITNQKTVPNI 234
SE ++ +P++
Sbjct: 15024 ESEAEPKQGIPDV 15062
>Contig505
Length = 1333
Score = 34.3 bits (77), Expect = 0.22, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 37/86 (43%), Gaps = 11/86 (12%)
Frame = +2
Query: 86 GPVPAPQPPAFRFVSRPGR--ARSESETLERSPPQSPGPGKAGDAPN-------RRSGHV 136
G P PPA F RP + S E L +PP P K G PN +++ +
Sbjct: 848 GGKKTPHPPADFFGRRPPPRPSISREEIL*TTPPPRDHPLKKGAPPNNTHPRATKKNPYT 1027
Query: 137 RGARVLSPPGRRAR--LSSPGPSRSS 160
RG + SPP R + P P +S+
Sbjct: 1028RGVNLFSPPHNTQR*TKTKPRPEKST 1105
>Contig1333
Length = 1827
Score = 32.3 bits (72), Expect = 0.72, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Frame = +3
Query: 5 HRLVSGKRRMHLTSRP---VASTHSPLILDMCPHLNNGPMTGCG 45
H +V G R++H+ + +A + + L + PHL NG TGC
Sbjct: 234 HSIVQGVRQLHVDDQAAVYMAQRRTLVTLPLLPHLRNGWQTGCA 365
>Contig3285
Length = 7026
Score = 32.3 bits (72), Expect = 0.72, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Frame = -3
Query: 5 HRLVSGKRRMHLTSRP---VASTHSPLILDMCPHLNNGPMTGCG 45
H +V G R++H+ + +A + + L + PHL NG TGC
Sbjct: 1546 HSIVQGVRQLHVDDQAAVYMAQRRTLVTLPLLPHLRNGWQTGCA 1415
>Contig4178
Length = 124204
Score = 32.0 bits (71), Expect = 0.96, Method: Composition-based stats.
Identities = 33/113 (29%), Positives = 40/113 (35%), Gaps = 12/113 (10%)
Frame = +3
Query: 48 GDPISHARGGVGGRGERLPRGFAR------------VVRVASEGSVRRPSGPVPAPQPPA 95
G + ARG G E LPRG R V R+A RRP P P
Sbjct: 122688 GAAVEGARGCGGSCSEHLPRGAQRGDDPSHAYQLVAVRRLARPQDYRRPRVEPAQPAGPC 122867
Query: 96 FRFVSRPGRARSESETLERSPPQSPGPGKAGDAPNRRSGHVRGARVLSPPGRR 148
R SR G SE + + +A + R GH RG + P R
Sbjct: 122868 GRVASREG---SEVRHVGGDA*AAAAVPQAPASRVSREGHARGTGFVRPESGR 123017
>Contig4132
Length = 50512
Score = 32.0 bits (71), Expect = 0.96, Method: Composition-based stats.
Identities = 36/105 (34%), Positives = 43/105 (40%), Gaps = 1/105 (0%)
Frame = +1
Query: 74 RVASEGSVRRPSGPVPAPQPPAFRFVSRPGRARSESETLERSPPQSPGPGKAGDAPNRRS 133
R GSVRR +G F S PG + S RSPP + P+RRS
Sbjct: 40111 RPCPRGSVRRTTGG--GAMSRRFGRCS*PGVSHPRSRRTTRSPPAT*------TLPSRRS 40266
Query: 134 GHVRGARVLSPP-GRRARLSSPGPSRSSEAREELRRHLVGLIERS 177
R +L PP G A SP SR A +R+H L RS
Sbjct: 40267 TPCRYRAILKPPHGPTASAGSPC-SRVPSAGLRIRKHTGPLCWRS 40398
Database: B_bigemina.contigs.fa
Posted date: Feb 28, 2008 11:56 AM
Number of letters in database: 19,733,690
Number of sequences in database: 4396
Lambda K H
0.319 0.136 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4396
Number of Hits to DB: 294,205,517
Number of extensions: 5537659
Number of successful extensions: 53936
Number of sequences better than 1.0: 637
Number of HSP's gapped: 44852
Number of HSP's successfully gapped: 1758
Length of database: 6,577,896
Neighboring words threshold: 13
Window for multiple hits: 40
X1: 15 ( 6.9 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.3 bits)
S2: 42 (20.8 bits)