TBLASTN 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|23481223|gb|EAA17565.1| selenophosphate synthetase [Plasmodium yoelii yoelii] (959 letters) Database: yoelii.fasta 2960 sequences; 20,171,213 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Plasmodium_yoelii_yoelii_str._17XNL|MALPY01772|2002-09-10|ds-DNA... 1473 0.0 Plasmodium_yoelii_yoelii_str._17XNL|MALPY01515|2002-09-10|ds-DNA... 34 0.26 Plasmodium_yoelii_yoelii_str._17XNL|MALPY00851|2002-09-10|ds-DNA... 31 2.2 Plasmodium_yoelii_yoelii_str._17XNL|MALPY00468|2002-09-10|ds-DNA... 31 3.5 Plasmodium_yoelii_yoelii_str._17XNL|MALPY01601|2002-09-10|ds-DNA... 30 4.7 >Plasmodium_yoelii_yoelii_str._17XNL|MALPY01772|2002-09-10|ds- DNA|Plasmodium_yoelii_TIGR Length = 6010 Score = 1473 bits (3813), Expect = 0.0, Method: Composition-based stats. Identities = 871/995 (87%), Positives = 872/995 (87%), Gaps = 36/995 (3%) Frame = -2 Query: 1 MWICKKXXXXXXXXXXXXXXRSKRFIEIFLESKELKGVNIILISKDSFIFLNKDVQNINA 60 MWICKK RSKRFIEIFLESKELKGVNIILISKDSFIFLNKDVQNINA Sbjct: 5337 MWICKKIDPVVDIVIIGFGVRSKRFIEIFLESKELKGVNIILISKDSFIFLNKDVQNINA 5158 Query: 61 CKESYVDLYKYCKERNILFINEKIDHIDXINKTIHFYSDRNNLNYXYLLCDFDYKTS--- 117 CKESYVDLYKYCKERNILFINEKIDHID INKTIHFYSDRNNLNY YLLCDFDYK+S Sbjct: 5157 CKESYVDLYKYCKERNILFINEKIDHIDXINKTIHFYSDRNNLNYXYLLCDFDYKSSYLL 4978 Query: 118 ---------------------------------KAXXXXXXXXYYKWKSYFTEHITIKKF 144 KA YYKWKSYFTEHITIKKF Sbjct: 4977 NKDLSNMNIYPYKNINLFFYYIHIIYLSLIQASKANNNNFINNYYKWKSYFTEHITIKKF 4798 Query: 145 YNFFSYNDKYVEDIFLMYDKVVSGFNFDIENGDVTPIDNTSNVGQGIVLSSEIKNMQTNQ 204 YNFFSYNDKYVEDIFLMYDKVVSGFNFDIENGDVTPIDNTSNVGQGIVLSSEIKNMQTNQ Sbjct: 4797 YNFFSYNDKYVEDIFLMYDKVVSGFNFDIENGDVTPIDNTSNVGQGIVLSSEIKNMQTNQ 4618 Query: 205 KNENDNCIXXXXXXXXXXXGKMIYLSIIENIKEIASYVKIKYIYIESDTHINDKKTKIDF 264 KNENDNCI GKMIYLSIIENIKEIASYVKIKYIYIESDTHINDKKTKIDF Sbjct: 4617 KNENDNCISLLLLSDNNDLGKMIYLSIIENIKEIASYVKIKYIYIESDTHINDKKTKIDF 4438 Query: 265 CENYEIIRSVESINKIDNNYVIKCVCNKNEIVLYNYNECINVTNIKYPSYFYNSKYNILN 324 CENYEIIRSVESINKIDNNYVIKCVCNKNEIVLYNYNECINVTNIKYPSYFYNSKYNILN Sbjct: 4437 CENYEIIRSVESINKIDNNYVIKCVCNKNEIVLYNYNECINVTNIKYPSYFYNSKYNILN 4258 Query: 325 SDTINTFCQYKNDNNIYFLNQINNYNDYTVCRTIYLNIYNSVFKNEYISIEEVXXXXXXX 384 SDTINTFCQYKNDNNIYFLNQINNYNDYTVCRTIYLNIYNSVFKNEYISIEEV Sbjct: 4257 SDTINTFCQYKNDNNIYFLNQINNYNDYTVCRTIYLNIYNSVFKNEYISIEEVKRQENEK 4078 Query: 385 XXXXXXXXPSCDNQMSSTSNILDTCEAKDKNNCSDIXXXXXXXXXXDLPEYIYDFYKKEY 444 PSCDNQMSSTSNILDTCEAKDKNNCSDI DLPEYIYDFYKKEY Sbjct: 4077 NENIKRENPSCDNQMSSTSNILDTCEAKDKNNCSDINKNLKTKTNNDLPEYIYDFYKKEY 3898 Query: 445 EKRLIVRKNTTYQISNKVEEDPNENNTPKGKSGKWTIIVKNSKIENKQITNIEKSEKIDL 504 EKRLIVRKNTTYQISNKVEEDPNENNTPKGKSGKWTIIVKNSKIENKQITNIEKSEKIDL Sbjct: 3897 EKRLIVRKNTTYQISNKVEEDPNENNTPKGKSGKWTIIVKNSKIENKQITNIEKSEKIDL 3718 Query: 505 YIKESIDKIINRNTCGGCGSKVPXXXXXXXXXXXXIYTSPNVYLGVEGCDDCCIFVHSKS 564 YIKESIDKIINRNTCGGCGSKVP IYTSPNVYLGVEGCDDCCIFVHSKS Sbjct: 3717 YIKESIDKIINRNTCGGCGSKVPSNVLSNSLKSLNIYTSPNVYLGVEGCDDCCIFVHSKS 3538 Query: 565 KRSEESPALVQTIDFFKSFIDDEYILGEVIAIHCLSDIYSMGGTGICALCVLIIKDNIEK 624 KRSEESPALVQTIDFFKSFIDDEYILGEVIAIHCLSDIYSMGGTGICALCVLIIKDNIEK Sbjct: 3537 KRSEESPALVQTIDFFKSFIDDEYILGEVIAIHCLSDIYSMGGTGICALCVLIIKDNIEK 3358 Query: 625 KLQQRLENILTGCCQKLKEEKCVLSGGHTCAGTENYVGLAVTGXXXXXXXXXXXXXXXXX 684 KLQQRLENILTGCCQKLKEEKCVLSGGHTCAGTENYVGLAVTG Sbjct: 3357 KLQQRLENILTGCCQKLKEEKCVLSGGHTCAGTENYVGLAVTGKIKKKKNNNKDKEEIRK 3178 Query: 685 SQNNESVLDKTNQVGNNSINKVNELNEAYHFLPKGSIEVKPGDVIITTKVFGFGFIMAAH 744 SQNNESVLDKTNQVGNNSINKVNELNEAYHFLPKGSIEVKPGDVIITTKVFGFGFIMAAH Sbjct: 3177 SQNNESVLDKTNQVGNNSINKVNELNEAYHFLPKGSIEVKPGDVIITTKVFGFGFIMAAH 2998 Query: 745 ISKKAKARWIYNCLDEMLISNRKGGLYFLKNNAKACTDVTGFGILGHLNEMIKCSRREYY 804 ISKKAKARWIYNCLDEMLISNRKGGLYFLKNNAKACTDVTGFGILGHLNEMIKCSRREYY Sbjct: 2997 ISKKAKARWIYNCLDEMLISNRKGGLYFLKNNAKACTDVTGFGILGHLNEMIKCSRREYY 2818 Query: 805 IKCVSNNISNNEINQKGNDNKCNELDNINFIGAKINLNKINIAEGVQECIQNNIYSSMYK 864 IKCVSNNISNNEINQKGNDNKCNELDNINFIGAKINLNKINIAEGVQECIQNNIYSSMYK Sbjct: 2817 IKCVSNNISNNEINQKGNDNKCNELDNINFIGAKINLNKINIAEGVQECIQNNIYSSMYK 2638 Query: 865 KNHYLCNNIINLDEAILNDKYGILFDPQTSGGLMAIVEREHANTILSDLKNMGYQNSSII 924 KNHYLCNNIINLDEAILNDKYGILFDPQTSGGLMAIVEREHANTILSDLKNMGYQNSSII Sbjct: 2637 KNHYLCNNIINLDEAILNDKYGILFDPQTSGGLMAIVEREHANTILSDLKNMGYQNSSII 2458 Query: 925 GEIINLQYDKYQNVSIDQITLSDYINTENSIYIEC 959 GEIINLQYDKYQNVSIDQITLSDYINTENSIYIEC Sbjct: 2457 GEIINLQYDKYQNVSIDQITLSDYINTENSIYIEC 2353 >Plasmodium_yoelii_yoelii_str._17XNL|MALPY01515|2002-09-10|ds- DNA|Plasmodium_yoelii_TIGR Length = 10184 Score = 34.3 bits (77), Expect = 0.26, Method: Composition-based stats. Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 5/71 (7%) Frame = -1 Query: 311 YPSYFYNSKYNILNSDTINTFCQYKNDNNIYFLNQINNYNDYTV-----CRTIYLNIYNS 365 Y SY Y Y+I++ NTF + +N N IYF+ + +N Y T+Y +Y Sbjct: 3218 YISYIYEKIYHIIHHIDTNTFFEEENYNKIYFIKNLEFFNIYKTILINFIYTLYNYLYFI 3039 Query: 366 VFKNEYISIEE 376 N+YI+I E Sbjct: 3038 QITNKYITITE 3006 >Plasmodium_yoelii_yoelii_str._17XNL|MALPY00851|2002-09-10|ds- DNA|Plasmodium_yoelii_TIGR Length = 15028 Score = 31.2 bits (69), Expect = 2.2, Method: Composition-based stats. Identities = 32/131 (24%), Positives = 65/131 (49%), Gaps = 3/131 (2%) Frame = +1 Query: 241 YVKIKYIYIESDTHINDKKTKIDFCENY-EIIRS--VESINKIDNNYVIKCVCNKNEIVL 297 Y I Y+ I + +IN K + + Y E+++ + S++ + NY+IK V +I Sbjct: 3706 YESIDYLDISNLVNINSKNCIFELIKFYIELLKYPLIHSVHILCINYLIKIVIKCYDI-R 3882 Query: 298 YNYNECINVTNIKYPSYFYNSKYNILNSDTINTFCQYKNDNNIYFLNQINNYNDYTVCRT 357 + YN + + +I + N++ + ++ KN N+Y++ +INN N+ + Sbjct: 3883 FEYNINVELYDIGPHVNIFVKIVNLIFAKILSILKDIKNSENVYYIEEINNINN--LIAL 4056 Query: 358 IYLNIYNSVFK 368 ++ NI NS + Sbjct: 4057 LFTNILNSCIR 4089 >Plasmodium_yoelii_yoelii_str._17XNL|MALPY00468|2002-09-10|ds- DNA|Plasmodium_yoelii_TIGR Length = 24324 Score = 30.8 bits (68), Expect = 3.5, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 5/61 (8%) Frame = -3 Query: 312 PSYFYNSKYNILNSDTI----NTFCQYKNDNNIYFLNQI-NNYNDYTVCRTIYLNIYNSV 366 PSY YN+KY N D + N Q KND+++Y +N I NNYN + + IY+ + Sbjct: 24088 PSYIYNNKYKS-NLDILLCIYNICLQRKNDSSLYLINYIVNNYNYFYFTHLFFYLIYHYI 23912 Query: 367 F 367 + Sbjct: 23911 Y 23909 >Plasmodium_yoelii_yoelii_str._17XNL|MALPY01601|2002-09-10|ds- DNA|Plasmodium_yoelii_TIGR Length = 3955 Score = 30.4 bits (67), Expect = 4.7, Method: Composition-based stats. Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 1/95 (1%) Frame = +2 Query: 284 YVIKCVCNKNEIVLY-NYNECINVTNIKYPSYFYNSKYNILNSDTINTFCQYKNDNNIYF 342 Y C+ N+ I +Y N+ NV+ I Y YF+ + TF Y DN+ + Sbjct: 2108 YFCSCLFNRRCIYIYINFLRIANVSIIIYEKYFF-----------MATFSHYY-DNSFFI 2251 Query: 343 LNQINNYNDYTVCRTIYLNIYNSVFKNEYISIEEV 377 L Y +T+C + + I +F Y+ I V Sbjct: 2252 LKIDKLYFSFTICMILIVLINQIIFIKNYLQIRHV 2356 Database: yoelii.fasta Posted date: Mar 4, 2008 12:01 PM Number of letters in database: 20,171,213 Number of sequences in database: 2960 Lambda K H 0.318 0.136 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2960 Number of Hits to DB: 33,376,753 Number of extensions: 910394 Number of successful extensions: 11560 Number of sequences better than 10.0: 668 Number of HSP's gapped: 11099 Number of HSP's successfully gapped: 1018 Length of query: 959 Length of database: 6,723,737 Length adjustment: 106 Effective length of query: 853 Effective length of database: 6,409,977 Effective search space: 5467710381 Effective search space used: 5467710381 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 48 (23.1 bits)