Command line: [exonerate -m p2g -q Sel4.fa -t regio.fa --showtargetgff]
Hostname: [am75241]

C4 Alignment:
------------
         Query: PF14_0251_changed  | Plasmodium falciparum 3D7 | Sel4 protein|conserved Plasmodium selenoprotein, unknown function | protein  | length=135
        Target: Sel4 predita Plasmodium yoelii yoelii
         Model: protein2genome
     Raw score: 288
   Query range: 15 -> 130
  Target range: 45 -> 393

  16 : PheThrThrLysAsnIleIleTyrIlePheIleGlyIleSerLeuLeuIlePheIleTyrLysI :  37
       .!!|||! !||||||:!::!:!:!|||.!!!!:  !  !! !!!!:!!||| !!:!!|||||| 
       LeuThrIleLysAsnValLeuPheIleIleMetIleAlaLeuPheIleIleValValTyrLysT
  46 : CTTACAATAAAAAATGTGTTGTTCATAATTATGATTGCATTATTTATTATAGTTGTTTATAAAT : 109

  38 : leLeuLysLysAsnLysLysAspAlaGluValLysArgAsnAsnGluIleSerIleLysMetLy :  58
        !:!!||| ! !!.!..|||  !:!!|||!.!||||||||||||||||||! !  !||||||||
       yrValLysTyrLysSerLysIleSerGluAlaLysArgAsnAsnGluIleTyrGluLysMetLy
 110 : ATGTGAAATATAAGAGTAAAATTTCCGAAGCTAAACGAAATAATGAAATATATGAAAAAATGAA : 172

  59 : sLeuSerArgGluLysGlnLeuGlnGluLeuAspLysGluMetMetIleAsnLysGluLysMet :  79
       |:!!|||||||||||||||||||||:!!|||!!::!!||||||!!:|||||||||:!!||||||
       sIleSerArgGluLysGlnLeuGlnLysLeuGluGluGluMetIleIleAsnLysLysLysMet
 173 : AATATCACGAGAAAAGCAATTACAAAAACTGGAAGAAGAAATGATAATTAATAAAAAGAAAATG : 235

  80 : LysGluGln<->AsnIleLysLysAsnGluGluLysLysLysAspAlaAspGlnAlaLysProL : 100
       !!.|||.!.   !!.! !! ! ! !!.|||.!.!!.!!.|||     !|||..!:!!! !||||
       AsnGluAsnLeuLysAsnThrAspLysGluAsnAsnAsnLysThrLeuAspSerSerThrProL
 236 : AATGAAAATCTTAAAAACACAGATAAGGAAAACAATAATAAAACATTAGACTCATCTACACCAA : 301

 101 : ysLeuGlySerLysAspAsnSerSerPheAsnHisLeuAsnAspTyrSerAsnTyrTyrArgPr : 121
       ||! !..!|||||||||!!.|||!!!|||!:!|||!!!!!.||||||||||||||||||!:!||
       ysSerAsnSerLysAspLysSerThrPheSerHisPheLysAspTyrSerAsnTyrTyrLysPr
 302 : AATCGAATTCTAAGGATAAATCAACATTTAGTCATTTTAAAGATTATTCGAATTATTATAAGCC : 364

 122 : oSerLeuLysAsnArgPheTyrAsnAsn : 130
       ||||:!!!:!:!!|||!!.||||||:!!
       oSerIleArgAspArgLeuTyrAsnHis
 365 : GTCTATAAGAGATAGGTTATATAATCAT : 393

vulgar: PF14_0251_changed 15 130 . Sel4 45 393 + 288 M 67 201 G 0 3 M 48 144
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome 1.4.0
##date 2008-03-13
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
Sel4	exonerate:protein2genome	gene	46	393	288	+	.	gene_id 1 ; sequence PF14_0251_changed ; gene_orientation .
Sel4	exonerate:protein2genome	cds	46	393	.	+	.	
Sel4	exonerate:protein2genome	exon	46	393	.	+	.	insertions 3 ; deletions 0
Sel4	exonerate:protein2genome	similarity	46	393	288	+	.	alignment_id 1 ; Query PF14_0251_changed ; Align 46 16 201 ; Align 250 83 144
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis