TBLASTN 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= SPP00000065_1.0 # Protein # Glutathione peroxidase 1 (GPx1) # Pan troglodytes # Complete (201 letters) Database: genome.fa 2960 sequences; 20,171,213 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Plasmodium_yoelii_yoelii_str._17XNL|MALPY00419|2002-09-10|ds-DNA... 28 3.4 >Plasmodium_yoelii_yoelii_str._17XNL|MALPY00419|2002-09-10|ds- DNA|Plasmodium_yoelii_TIGR Length = 7267 Score = 27.7 bits (60), Expect = 3.4, Method: Composition-based stats. Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 2/63 (3%) Frame = +2 Query: 41 ENVASLUGTTVRDYTQMNELQRRLGPRGLV--VLGFPCNQFGHQENAKNEEILNSLKYVR 98 + + +L T+V D T NE+ L G V VL E KN ILNS KY++ Sbjct: 5030 KKLGNLIKTSVVDITSYNEISTNLNELGYVDVVLLIYVLSSVSPEKMKNV-ILNSYKYLK 5206 Query: 99 PGG 101 GG Sbjct: 5207 SGG 5215 TBLASTN 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= SPP00000066_1.0 # Protein # Glutathione peroxidase 2 (GPx2) # Pan troglodytes # Complete (190 letters) Database: genome.fa 2960 sequences; 20,171,213 total letters Searching..................................................done ***** No hits found ****** TBLASTN 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= SPP00000067_1.0 # Protein # Glutathione peroxidase 3 (GPx3) # Pan troglodytes # Complete (226 letters) Database: genome.fa 2960 sequences; 20,171,213 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Plasmodium_yoelii_yoelii_str._17XNL|MALPY00974|2002-09-10|ds-DNA... 27 6.3 >Plasmodium_yoelii_yoelii_str._17XNL|MALPY00974|2002-09-10|ds- DNA|Plasmodium_yoelii_TIGR Length = 7156 Score = 27.3 bits (59), Expect = 6.3, Method: Composition-based stats. Identities = 13/25 (52%), Positives = 16/25 (64%) Frame = -1 Query: 145 EQKFYTFLKNSCPPTSELLGTSDRL 169 E +F FL PPT +L GTS+RL Sbjct: 5854 EWQFCAFLLRVFPPTGKLSGTSERL 5780 TBLASTN 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= SPP00000068_1.0 # Protein # Glutathione peroxidase 4 (GPx4) # Pan troglodytes # Complete (197 letters) Database: genome.fa 2960 sequences; 20,171,213 total letters Searching..................................................done ***** No hits found ****** TBLASTN 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= SPP00000069_1.0 # Protein # Glutathione peroxidase 5 (GPx5) # Pan troglodytes # Complete (220 letters) Database: genome.fa 2960 sequences; 20,171,213 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Plasmodium_yoelii_yoelii_str._17XNL|MALPY01214|2002-09-10|ds-DNA... 31 0.39 Plasmodium_yoelii_yoelii_str._17XNL|MALPY01122|2002-09-10|ds-DNA... 27 4.9 >Plasmodium_yoelii_yoelii_str._17XNL|MALPY01214|2002-09-10|ds- DNA|Plasmodium_yoelii_TIGR Length = 23255 Score = 31.2 bits (69), Expect = 0.39, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 4/64 (6%) Frame = +2 Query: 24 KQEKMKMDCHKDE----KGTIYDYEAIALNKNEYVSFKQYVGKHILFVNVATYCGLTAQY 79 K E+++ D +K E K I DY+ N NE+ + +Q++ KHILF+ +T + Sbjct: 3386 KNEEIQKDINKIETVNRKNIINDYQTNLNNLNEFSNKEQFI-KHILFLKKQKENDITDEQ 3562 Query: 80 PELN 83 E+N Sbjct: 3563 NEMN 3574 >Plasmodium_yoelii_yoelii_str._17XNL|MALPY01122|2002-09-10|ds- DNA|Plasmodium_yoelii_TIGR Length = 9671 Score = 27.3 bits (59), Expect = 4.9, Method: Composition-based stats. Identities = 9/25 (36%), Positives = 17/25 (68%) Frame = +1 Query: 43 YEAIALNKNEYVSFKQYVGKHILFV 67 + +L +N Y+SFK ++ KH+L + Sbjct: 3853 FSIFSLFENIYISFKTFINKHVLLI 3927 TBLASTN 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= SPP00000070_1.0 # Protein # Glutathione peroxidase 6 (GPx6) # Pan troglodytes # Complete (221 letters) Database: genome.fa 2960 sequences; 20,171,213 total letters Searching..................................................done ***** No hits found ****** TBLASTN 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= SPP00000071_1.0 # Protein # Glutathione peroxidase 7 (GPx7) # Pan troglodytes # Complete (134 letters) Database: genome.fa 2960 sequences; 20,171,213 total letters Searching..................................................done ***** No hits found ****** TBLASTN 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= SPP00000072_1.0 # Protein # Selenophosphate synthetase 1 (SPS1) # Pan troglodytes # Complete (391 letters) Database: genome.fa 2960 sequences; 20,171,213 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Plasmodium_yoelii_yoelii_str._17XNL|MALPY01772|2002-09-10|ds-DNA... 70 2e-12 Plasmodium_yoelii_yoelii_str._17XNL|MALPY00633|2002-09-10|ds-DNA... 30 2.8 Plasmodium_yoelii_yoelii_str._17XNL|MALPY02887|2002-09-10|ds-DNA... 28 6.5 >Plasmodium_yoelii_yoelii_str._17XNL|MALPY01772|2002-09-10|ds- DNA|Plasmodium_yoelii_TIGR Length = 6010 Score = 70.1 bits (170), Expect = 2e-12, Method: Composition-based stats. Identities = 79/307 (25%), Positives = 119/307 (38%), Gaps = 49/307 (15%) Frame = -2 Query: 27 GTGCKVPQDVLQKLLESLQENHFQEDEQFLGAVMPRLGIGMDTCVIPLRHGGL------S 80 G G KVP +VL L+SL N + +LG G D C I + + Sbjct: 3669 GCGSKVPSNVLSNSLKSL--NIYTSPNVYLGVE------GCDDCCIFVHSKSKRSEESPA 3514 Query: 81 LVQTTDYIYPIVDDPYMMGRIACANVLSDLYAMGVTECDNMLMLLGVSN--KMTDRERDK 138 LVQT D+ +DD Y++G + + LSD+Y+MG T + +L+ N K + + Sbjct: 3513 LVQTIDFFKSFIDDEYILGEVIAIHCLSDIYSMGGTGICALCVLIIKDNIEKKLQQRLEN 3334 Query: 139 VMPLIIQGFKD-----------AAEE--AGTSVTG--------------------GQTVL 165 ++ Q K+ A E G +VTG ++VL Sbjct: 3333 ILTGCCQKLKEEKCVLSGGHTCAGTENYVGLAVTGKIKKKKNNNKDKEEIRKSQNNESVL 3154 Query: 166 NPWIVLGGVATTVCQPNEF-----IMPDNAV---PGDVLVLTKPLGTQVAVAVHQWLDIP 217 + +G ++ + NE +P ++ PGDV++ TK G +A H Sbjct: 3153 DKTNQVGN--NSINKVNELNEAYHFLPKGSIEVKPGDVIITTKVFGFGFIMAAHISKKAK 2980 Query: 218 EKWNKIKLVVTQEDVELAYQEAMMNMARLNRTAAGLMHTFNAHAATDITGFGILGHAQNL 277 +W + M NR NA A TD+TGFGILGH + Sbjct: 2979 ARW---------------IYNCLDEMLISNRKGGLYFLKNNAKACTDVTGFGILGHLNEM 2845 Query: 278 AKQQRNE 284 K R E Sbjct: 2844 IKCSRRE 2824 >Plasmodium_yoelii_yoelii_str._17XNL|MALPY00633|2002-09-10|ds- DNA|Plasmodium_yoelii_TIGR Length = 30803 Score = 29.6 bits (65), Expect = 2.8, Method: Composition-based stats. Identities = 16/31 (51%), Positives = 21/31 (67%), Gaps = 2/31 (6%) Frame = +1 Query: 219 KWNKIKLVVTQEDV--ELAYQEAMMNMARLN 247 K NKIKL TQE+V ++ Y E+ +NM R N Sbjct: 22033 KKNKIKLRKTQENVDKDIIYMESRINMMREN 22125 >Plasmodium_yoelii_yoelii_str._17XNL|MALPY02887|2002-09-10|ds- DNA|Plasmodium_yoelii_TIGR Length = 2072 Score = 28.1 bits (61), Expect = 6.5, Method: Composition-based stats. Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 3/81 (3%) Frame = -3 Query: 59 VMPRLGIGMDTCVIPLRHGGLSLVQTTDYIYPIVDDPYMMGRIACANVLS--DLYAMGVT 116 ++ R+G + V G+ + + PI PY++G +A V S +L +G Sbjct: 882 MLTRIGSSLGVIVYANAQXGIGQXRFFREVAPIGALPYLVGYLASRAVSSRPELAGLGRW 703 Query: 117 ECDNMLMLLGVS-NKMTDRER 136 E ML+L GV+ +T R R Sbjct: 702 EAFGMLVLFGVAYGAVTPRSR 640 TBLASTN 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= SPP00000073_1.0 # Protein # Selenophosphate synthetase 2 (SPS2) # Pan troglodytes # Complete (448 letters) Database: genome.fa 2960 sequences; 20,171,213 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Plasmodium_yoelii_yoelii_str._17XNL|MALPY01772|2002-09-10|ds-DNA... 43 3e-04 >Plasmodium_yoelii_yoelii_str._17XNL|MALPY01772|2002-09-10|ds- DNA|Plasmodium_yoelii_TIGR Length = 6010 Score = 43.1 bits (100), Expect = 3e-04, Method: Composition-based stats. Identities = 17/37 (45%), Positives = 26/37 (70%) Frame = -2 Query: 132 SLVQTTDFFYPLVEDPYMMGRIACANVLSDLYAMGIT 168 +LVQT DFF ++D Y++G + + LSD+Y+MG T Sbjct: 3516 ALVQTIDFFKSFIDDEYILGEVIAIHCLSDIYSMGGT 3406 Score = 41.6 bits (96), Expect = 8e-04, Method: Composition-based stats. Identities = 29/92 (31%), Positives = 35/92 (38%) Frame = -2 Query: 245 GDVLVLTKPLGTQVAVNAHQWLDNPERWNKVKMVVSREEVELAYQEAMFNMATLNRTAAG 304 GDV++ TK G + AH RW + M NR Sbjct: 3054 GDVIITTKVFGFGFIMAAHISKKAKARW---------------IYNCLDEMLISNRKGGL 2920 Query: 305 LMHTFNAHAATDITGFGILGHSQNLAKQQRNE 336 NA A TD+TGFGILGH + K R E Sbjct: 2919 YFLKNNAKACTDVTGFGILGHLNEMIKCSRRE 2824 TBLASTN 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= SPP00000074_1.0 # Protein # Selenoprotein P (SelP) # Pan troglodytes # Complete (380 letters) Database: genome.fa 2960 sequences; 20,171,213 total letters Searching..................................................done ***** No hits found ****** Database: genome.fa Posted date: Feb 25, 2008 11:55 AM Number of letters in database: 20,171,213 Number of sequences in database: 2960 Lambda K H 0.322 0.140 0.437 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2960 Number of Hits to DB: 46,996,962 Number of extensions: 638946 Number of successful extensions: 2245 Number of sequences better than 10.0: 12 Number of HSP's gapped: 2243 Number of HSP's successfully gapped: 15 Length of database: 6,723,737 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.4 bits) S2: 43 (21.2 bits)