TBLASTN 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= SPP00000078_1.0 # Protein # Methionine sulfoxide reductase A (MsrA) # Mus musculus # Complete (233 letters) Database: genome.fa 2960 sequences; 20,171,213 total letters Searching..................................................done ***** No hits found ****** TBLASTN 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= SPP00000079_1.0 # Protein # Thioredoxin reductase 1 (TR1) # Mus musculus # Complete (616 letters) Database: genome.fa 2960 sequences; 20,171,213 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Plasmodium_yoelii_yoelii_str._17XNL|MALPY00659|2002-09-10|ds-DNA... 397 e-110 Plasmodium_yoelii_yoelii_str._17XNL|MALPY00317|2002-09-10|ds-DNA... 177 2e-44 Plasmodium_yoelii_yoelii_str._17XNL|MALPY01482|2002-09-10|ds-DNA... 119 3e-27 Plasmodium_yoelii_yoelii_str._17XNL|MALPY00156|2002-09-10|ds-DNA... 68 1e-11 Plasmodium_yoelii_yoelii_str._17XNL|MALPY02922|2002-09-10|ds-DNA... 52 1e-06 Plasmodium_yoelii_yoelii_str._17XNL|MALPY02913|2002-09-10|ds-DNA... 41 0.002 >Plasmodium_yoelii_yoelii_str._17XNL|MALPY00659|2002-09-10|ds- DNA|Plasmodium_yoelii_TIGR Length = 14426 Score = 397 bits (1019), Expect = e-110, Method: Composition-based stats. Identities = 225/504 (44%), Positives = 294/504 (58%), Gaps = 21/504 (4%) Frame = -2 Query: 124 SYDFDLIIIXXXXXXXXXXXXXXXXXXFDKKVLVLDFVTPTPLGTRWGLGGTCVNVGCIP 183 +YD+D I+I KVL+ DFV P+ GT+WG+GGTCVNVGC+P Sbjct: 13339 NYDYDYIVIGGGPGGMASAKEAASHGA---KVLLFDFVKPSSQGTKWGIGGTCVNVGCVP 13169 Query: 184 KKLMHQAALLGQALK-DSRNYGWKVEDTVKHDWEKMTESVQSHIGSLNWGYRVALREKKV 242 KKLMH A +G K DS YGW+ D +KHDW K+ +VQSHI SLN+ Y V L+ KV Sbjct: 13168 KKLMHYAGNMGTLFKSDSDKYGWEC-DNLKHDWNKLVSTVQSHIRSLNFSYMVGLKSSKV 12992 Query: 243 VYENAYGRFIGPHRI--VATNNKGKEKIYSAERFLIATGERPRYLGIPGD----KEYCIS 296 Y N + + + + KE + + LIATG RP IP D KE I+ Sbjct: 12991 KYINGLAKLKDKNTVSYYLKGDTSKEDCVTGKYILIATGCRPN---IPDDVIGAKELSIT 12821 Query: 297 SDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIGEH 356 SDD+FSL PGKTLVVGASYVALECAGFL +G D T+ VRSI+LRGFDQ ANKI + Sbjct: 12820 SDDIFSLKKNPGKTLVVGASYVALECAGFLNSLGCDTTISVRSIILRGFDQQCANKIKLY 12641 Query: 357 MEEHGIKFIRQFVPTKIEQIEAGTPGRLRVTAQSTNSEETIEGEFNTVLLAVGRDSCTRT 416 MEE G+ F+ +P K+ T ++ N+ + F+TVL A+GR Sbjct: 12640 MEEQGVTFMCGVLPKKL------TKENDKILVHFNNNTTEL---FDTVLYAIGRKGDIDG 12488 Query: 417 IGLETVGVKINEKTGKIPVTDEEQTNVPYIYAIGDILEGKLELTPVAIQAGRLLAQRLYG 476 + LE + + IN KI TN+P I+A+GDI E EL PVAI+AG +LA+RL+ Sbjct: 12487 LNLEKLNININNNNNKIITDKFSCTNIPNIFAVGDIAENVPELAPVAIKAGEILARRLFK 12308 Query: 477 GSNVKCDYDNVPTTVFTPLEYGCCGLSEEKAVEKFGEENIEVYHSFFWPLEWTVPSRD-- 534 SN Y+ +PT+++TP+EYG CG SEE+A E+FG+ NIE++ F LE + R Sbjct: 12307 NSNEIMKYNLIPTSIYTPIEYGSCGYSEEQAYEQFGKNNIEIFLQEFNNLEISAVHRTKH 12128 Query: 535 ------------NNKCYAKIICNLKDDERVVGFHVLGPNAGEVTQGFAAALKCGLTKQQL 582 ++ C +K++C +D RV+GFH +GPNAGEVTQG A ALK K Sbjct: 12127 LKVQKDEYDVDISSTCLSKLVCLKNEDNRVIGFHYVGPNAGEVTQGMALALKLNAKKSDF 11948 Query: 583 DSTIGIHPVCAEIFTTLSVTKRSG 606 D+ IGIHP AE F LS+T SG Sbjct: 11947 DNCIGIHPTDAESFMNLSITLSSG 11876 >Plasmodium_yoelii_yoelii_str._17XNL|MALPY00317|2002-09-10|ds- DNA|Plasmodium_yoelii_TIGR Length = 33648 Score = 177 bits (448), Expect = 2e-44, Method: Composition-based stats. Identities = 140/458 (30%), Positives = 222/458 (48%), Gaps = 44/458 (9%) Frame = +3 Query: 186 LMHQAALLGQALKDSRNYGWKVEDTVKHDWEKMTESVQSHIGSLNWGYRVALREKKV-VY 244 +M AA + L++SR+YG+ T + ++ E +I LN YR L+ V VY Sbjct: 24528 IMFNAASIHDILQNSRHYGFDTRFTF--NLPQLVERRDKYIRRLNDIYRNNLKNDNVEVY 24701 Query: 245 ENAYGRFIGPHRIVATNNKGKE-----KIYSAERFLIATGERPRYLGIPGDKEYCISSDD 299 E ++ + NK ++ +I + LIA G P + + G E+ ISSD+ Sbjct: 24702 EGTASLINERKVLIKSKNKSEDDEKNHEIIEGKNILIAVGNTPVFPTVKG-VEHTISSDE 24878 Query: 300 LFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRSI-LLRGFDQDMANKIGEHME 358 F + + ++G Y+A+E + +G++ + R LLR FD+ + N++ M+ Sbjct: 24879 FFDIKEAK-RIGIIGGGYIAVELINVIKRLGIESYIFARGKRLLRKFDESIVNELENDMK 25055 Query: 359 EHGIKFIRQFVPTKIEQIEAGTPGRLRVTAQSTNSEETIEGEFNTVLLAVGRDSCTRTIG 418 ++ I I +E+IE L + E + V+ VGR T+ + Sbjct: 25056 KNNINIITM---ANVEEIEKVHDKNLTIYLNDGRKFE----HLDYVIYCVGRSPNTKNLN 25214 Query: 419 LETVGVKINEKTGKIPVTDEEQTNVPYIYAIGD---ILEGK------------------- 456 LE + I K I V D ++TN+ I+A+GD + +GK Sbjct: 25215 LEKL--NITTKNDYIIVDDNQRTNLKNIFAVGDCCMVKKGKELEDLNLLKLYDEQIYINN 25388 Query: 457 -----------LELTPVAIQAGRLLAQRLYGGSNVKCDYDNVPTTVFTPLEYGCCGLSEE 505 ++LTPVAI AGRLLA R++ K +Y +PT +F+ G GLSEE Sbjct: 25389 KKNDTEDSFYNVQLTPVAINAGRLLADRIFLNKTRKTNYSLIPTVIFSHPPIGTIGLSEE 25568 Query: 506 KAVEKFGEENIEVYHSFFWPLEWTV----PSRDNNKCYAKIICNLKDDERVVGFHVLGPN 561 +A+ +G+EN+++Y S F L ++V PS+ K Y K++C + +E + G H++G N Sbjct: 25569 EAINIYGKENVKIYESKFTNLFFSVYDIEPSQ-KEKTYIKLVC-VGKEELIKGLHIIGLN 25742 Query: 562 AGEVTQGFAAALKCGLTKQQLDSTIGIHPVCAEIFTTL 599 A E+ QGFA ALK TK+ D TI IHP AE TL Sbjct: 25743 ADEIIQGFAVALKMNATKKDFDETIPIHPTAAEELVTL 25856 Score = 31.2 bits (69), Expect = 1.4, Method: Composition-based stats. Identities = 11/12 (91%), Positives = 12/12 (100%) Frame = +2 Query: 172 LGGTCVNVGCIP 183 LGGTCVNVGC+P Sbjct: 24356 LGGTCVNVGCVP 24391 >Plasmodium_yoelii_yoelii_str._17XNL|MALPY01482|2002-09-10|ds- DNA|Plasmodium_yoelii_TIGR Length = 7932 Score = 119 bits (299), Expect = 3e-27, Method: Composition-based stats. Identities = 128/465 (27%), Positives = 210/465 (45%), Gaps = 35/465 (7%) Frame = +2 Query: 172 LGGTCVNVGCIPKK-LMHQAALLGQALKDSRNYGWKVEDTVKHDWEKMTESVQSHIGSLN 230 LGGTC+N GCIP K L+H A ++ + G + D VK D E++ + +G+L Sbjct: 4346 LGGTCLNRGCIPSKSLLHIAHNYYESKNKFKECGILI-DNVKLDIEQVHKHKNKCMGNLA 4522 Query: 231 WGYRVALREKKVVYENAYGRFI-GPHRIVATNNKGKEKIYSAERFLIATGERPRYLGIP- 288 G ++ V + G I G +V T N+G++K Y+AER +IATG +P + IP Sbjct: 4523 DGISFLYKKNNVKHIIGRGSIIDGNTILVETENEGQKK-YTAERIVIATGSKP--IEIPL 4693 Query: 289 -------------------GDKEYCISSDDLFSLPYCPGKTLVVGASYVALECAGFLAGI 329 D + +SDD+ + P ++G + LE + Sbjct: 4694 KKLDDNNINDVENVKDILEYDHKLIQTSDDILNFKEIPKTMSIIGGGVIGLEIGSVFSKF 4873 Query: 330 GLDVTVMVRSILLRGF-DQDMANKIGEHMEEHGIKFIRQFVPTKIEQIEAGTPGRLRVTA 388 G DVTV + L GF D D++ + + +E+ IKF+ F + I T + A Sbjct: 4874 GSDVTVYEYNSRLCGFLDPDVSKVLQKVLEKIKIKFM--FNTSIIGGNLNTTNNEAILYA 5047 Query: 389 QSTNSEETIEGEFNTVLLAVGRDSCTRTIGLETVGVKINEKTGKIPVTDEEQTNV---PY 445 + + + + + + VL+ VGR + I LE + +++N K KI V +E NV P Sbjct: 5048 RDNKTNQIKKVKSDIVLVCVGRKANLENINLEKLSIELN-KNKKIQV--DEYFNVKSQPT 5218 Query: 446 IYAIGDILEGKLELTPVAIQAGRLLAQRLYG------GSNVKCDYDNVPTTVFTPLEYGC 499 I AIGD ++G + L A + G ++A L+ +YD +P+ ++T E Sbjct: 5219 IKAIGDAIDGSM-LAHKAEEEGYIVADMLFNELKNNKKKKNHINYDLIPSVIYTHPEVAS 5395 Query: 500 CGLSEEKAVE-KFGEENIEVYHSFFWPLEWTVPSR--DNNKCYAKIICNLKDDERVVGFH 556 G +E+K E K Y S +P SR D+ K+I KD ++G Sbjct: 5396 VGYNEQKCKELKLN------YKSVSFPFAANSRSRTIDDYDGLIKLIVE-KDTNVILGSQ 5554 Query: 557 VLGPNAGEVTQGFAAALKCGLTKQQLDSTIGIHPVCAEIFTTLSV 601 ++G NA E+ + T + L I HP +E+ +++ Sbjct: 5555 IIGNNASELILPLSIYASHKGTSKNLSKIIYPHPTFSEVIKEVAL 5689 >Plasmodium_yoelii_yoelii_str._17XNL|MALPY00156|2002-09-10|ds- DNA|Plasmodium_yoelii_TIGR Length = 21720 Score = 68.2 bits (165), Expect = 1e-11, Method: Composition-based stats. Identities = 107/443 (24%), Positives = 173/443 (39%), Gaps = 86/443 (19%) Frame = -1 Query: 167 GTRWGLGGTCVNVGCIPKKLMHQAALLGQALKDSR---NYGW-------KVEDTVKH--- 213 G LGGTCVNVGCIP K + A + LK+ NYG K +D +K Sbjct: 20001 GNEESLGGTCVNVGCIPSKALLYATNKYRELKNISKLCNYGIYSNAYIDKEKDEIKSTQL 19822 Query: 214 -------DWEKMTESVQSHIGSLNWGYRVALREKK---------VVYENAYGRFIGPHRI 257 + K+ E Q+ I L G ++ K V+Y++ Y I + I Sbjct: 19821 IADSICINTNKLKEYTQNVIKKLKSGITHGMKNTKFNKNPQSVQVIYDHGY--IINKNTI 19648 Query: 258 VATNNKGKEKIYSAERFLIATGERPRY-LGIPGDKEYCISSDDLFSLPYCPGKTLVVGAS 316 + NK ++Y A+ ++ATG P I D + +SD +L ++G Sbjct: 19647 QSKKNK---QLYKAKNIILATGSIPNVPQNINVDHKTVFTSDQAINLQGLQNYISIIGMG 19477 Query: 317 YVALECAGFLAGIGLDVTVMVRSILLRGF-DQDMANKIGEHMEEHGIKF--IRQFVPTKI 373 + LE + +G ++T S F D D+A ++ E +K I F+ T+I Sbjct: 19476 IIGLEFSDIYTALGSEITFFEYSPEFLPFVDTDIA----KYFENVFLKTKPINYFLNTEI 19309 Query: 374 EQIEAGTPG---------RLRVTAQSTNSEETIEGE------FNTVLLAVGRDSCTRTIG 418 + + + G R + ST S I GE ++ L+A GR T IG Sbjct: 19308 KYVHPASNGKPVVIGYSLRTKTNPDSTASTTQINGEHVKELHVDSCLVATGRKPNTENIG 19129 Query: 419 LETVGVKINE-----------KTGKIPVTDEEQTNV------------PYIYAIGDILEG 455 LE + K+N+ + I TD++ N I+ IGD Sbjct: 19128 LENLNAKMNKGFVLVDDQLRVQIEPIQKTDQKNANTNELNQSIDTQVYDNIFCIGDANGK 18949 Query: 456 KLELTPVAIQAGRL---------------LAQRLYGGSNVKCDYDNVPTTVFTPLEYGCC 500 ++ + QA R+ + + N Y N+P+ +T E Sbjct: 18948 QMLAHTASHQALRVIDYIAKKEKKEEKEEIINPIENILNKPIIYKNIPSVCYTNPELAFV 18769 Query: 501 GLSEEKAVEKFGEENIEVYHSFF 523 G SE+ A K ++I+V +++ Sbjct: 18768 GFSEKDA-NKLYPDSIDVEITYY 18703 >Plasmodium_yoelii_yoelii_str._17XNL|MALPY02922|2002-09-10|ds- DNA|Plasmodium_yoelii_TIGR Length = 3310 Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats. Identities = 51/202 (25%), Positives = 87/202 (43%), Gaps = 13/202 (6%) Frame = +2 Query: 264 GKEKIYSAERFLIATGERPRYLGIPGDKEY-------CISSDDLFSLPYCPGKTLVVGAS 316 G +Y+ + +IATG RYLG+P ++ Y C + D F Y V+G Sbjct: 2675 GDAGVYTCDALIIATGASARYLGLPSEEAYKGRGVSACATCDGFF---YKGKHVAVIGGG 2845 Query: 317 YVALECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIGEHMEEHGIKFIRQFVPTKIEQI 376 A+E A +L+ I VTV+ R R ++ +++K+ E + V ++ Sbjct: 2846 NTAVEEALYLSNIAAKVTVVHRRDKFRS-EKILSDKLLERAANGNVSIEWNSVLEEVLGD 3022 Query: 377 EAGTPG-RLRVTAQSTNSEETIEGEFNTVLLAVGRDSCTRTIGLETVGVKINEKTGKIPV 435 + G G R+R T+ + +EG V +A+G T E ++ + G I V Sbjct: 3023 DMGVTGMRIRNVQDGTSKDIALEG----VFIAIGHSPNT-----EIFAGQLGMRNGYIVV 3175 Query: 436 TDEEQ-----TNVPYIYAIGDI 452 + T V ++A GD+ Sbjct: 3176 KGGSEGGATATTVEGVFAAGDV 3241 >Plasmodium_yoelii_yoelii_str._17XNL|MALPY02913|2002-09-10|ds- DNA|Plasmodium_yoelii_TIGR Length = 3288 Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats. Identities = 29/81 (35%), Positives = 42/81 (51%), Gaps = 4/81 (4%) Frame = +2 Query: 260 TNNKGKEKIYSAERFLIATGERPRYLGIPGDK-EYCISSDDLF---SLPYCPGKTLVVGA 315 T+++G IY E+ L+ATG RPR GD Y + DD F +L K ++G Sbjct: 2129 TDDEGT--IYRFEKLLLATGGRPRRFPFGGDDILYFRTVDDYFRLRTLTETRRKFAIIGG 2302 Query: 316 SYVALECAGFLAGIGLDVTVM 336 ++ E A LA IG DV ++ Sbjct: 2303 GFIGSEIAAALASIGKDVVMI 2365 TBLASTN 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= SPP00000080_1.0 # Protein # Thioredoxin reductase 2 (TR2) # Mus musculus # Complete (496 letters) Database: genome.fa 2960 sequences; 20,171,213 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Plasmodium_yoelii_yoelii_str._17XNL|MALPY00659|2002-09-10|ds-DNA... 378 e-105 Plasmodium_yoelii_yoelii_str._17XNL|MALPY00317|2002-09-10|ds-DNA... 158 6e-39 Plasmodium_yoelii_yoelii_str._17XNL|MALPY01482|2002-09-10|ds-DNA... 87 2e-17 Plasmodium_yoelii_yoelii_str._17XNL|MALPY00156|2002-09-10|ds-DNA... 50 2e-06 Plasmodium_yoelii_yoelii_str._17XNL|MALPY02913|2002-09-10|ds-DNA... 33 0.24 >Plasmodium_yoelii_yoelii_str._17XNL|MALPY00659|2002-09-10|ds- DNA|Plasmodium_yoelii_TIGR Length = 14426 Score = 378 bits (971), Expect = e-105, Method: Composition-based stats. Identities = 213/493 (43%), Positives = 293/493 (59%), Gaps = 48/493 (9%) Frame = -2 Query: 43 FDLLVIGGGSGGLACAKEAAQLGKKVAVADYVEPSPRGTKWGLGGTCVNVGCIPKKLMHQ 102 +D +VIGGG GG+A AKEAA G KV + D+V+PS +GTKWG+GGTCVNVGC+PKKLMH Sbjct: 13330 YDYIVIGGGPGGMASAKEAASHGAKVLLFDFVKPSSQGTKWGIGGTCVNVGCVPKKLMHY 13151 Query: 103 AALLGGMIR-DAHHYGWEVAQPVQHNWKTMAEAVQNHVKSLNWGHRVQLQDRKVKYFNIK 161 A +G + + D+ YGWE ++H+W + VQ+H++SLN+ + V L+ KVKY N Sbjct: 13150 AGNMGTLFKSDSDKYGWECDN-LKHDWNKLVSTVQSHIRSLNFSYMVGLKSSKVKYINGL 12974 Query: 162 ASFVDEHTVRGVDKG--GKATLLSAEHIVIATGGRPRYPTQVKGALEYGITSDDIFWLKE 219 A D++TV KG K ++ ++I+IATG RP P V GA E ITSDDIF LK+ Sbjct: 12973 AKLKDKNTVSYYLKGDTSKEDCVTGKYILIATGCRPNIPDDVIGAKELSITSDDIFSLKK 12794 Query: 220 SPGKTSVPAAEDVALECAGFLTGIGLDTTVMMRSIPLRGFDQQMSSLVTEHMESHGTQFL 279 +PGKT V A VALECAGFL +G DTT+ +RSI LRGFDQQ ++ + +ME G F+ Sbjct: 12793 NPGKTLVVGASYVALECAGFLNSLGCDTTISVRSIILRGFDQQCANKIKLYMEEQGVTFM 12614 Query: 280 KGCVPSHIKKLPTNQLQVTWEDHASGKEDTGTFDTVLWAIGRVPETRTLNLEKAGISTNP 339 G +P + K +++ V + ++ T FDTVL+AIGR + LNLEK I+ N Sbjct: 12613 CGVLPKKLTK-ENDKILVHFNNNT-----TELFDTVLYAIGRKGDIDGLNLEKLNININN 12452 Query: 340 KNQKIIVDAQEATSVPHIYAIGDVAEGRPELTPTAIKAGKLLAQRLFGKSSTLMDYSNVY 399 N KII D T++P+I+A+GD+AE PEL P AIKAG++LA+RLF S+ +M Y+ + Sbjct: 12451 NNNKIITDKFSCTNIPNIFAVGDIAENVPELAPVAIKAGEILARRLFKNSNEIMKYNLIP 12272 Query: 400 HAYYKPLEFTVA--------------------------------------------DRD- 414 + Y P+E+ D D Sbjct: 12271 TSIYTPIEYGSCGYSEEQAYEQFGKNNIEIFLQEFNNLEISAVHRTKHLKVQKDEYDVDI 12092 Query: 415 ASQCYIKMVCMREPPQLVLGLHFLGPNAGEVTQGFALGIKCGASYAQVMQTVGIHPTCSE 474 +S C K+VC++ V+G H++GPNAGEVTQG AL +K A + +GIHPT +E Sbjct: 12091 SSTCLSKLVCLKNEDNRVIGFHYVGPNAGEVTQGMALALKLNAKKSDFDNCIGIHPTDAE 11912 Query: 475 EVVKLHISKRSGL 487 + L I+ SGL Sbjct: 11911 SFMNLSITLSSGL 11873 >Plasmodium_yoelii_yoelii_str._17XNL|MALPY00317|2002-09-10|ds- DNA|Plasmodium_yoelii_TIGR Length = 33648 Score = 158 bits (399), Expect = 6e-39, Method: Composition-based stats. Identities = 124/456 (27%), Positives = 215/456 (47%), Gaps = 74/456 (16%) Frame = +3 Query: 99 LMHQAALLGGMIRDAHHYGWEVAQPVQHNWKTMAEAVQNHVKSLNWGHRVQLQDRKVKYF 158 +M AA + +++++ HYG++ N + E +++ LN +R L++ V+ + Sbjct: 24528 IMFNAASIHDILQNSRHYGFDTR--FTFNLPQLVERRDKYIRRLNDIYRNNLKNDNVEVY 24701 Query: 159 NIKASFVDEHTV------RGVDKGGKATLLSAEHIVIATGGRPRYPTQVKGALEYGITSD 212 AS ++E V + D ++ ++I+IA G P +PT VKG +E+ I+SD Sbjct: 24702 EGTASLINERKVLIKSKNKSEDDEKNHEIIEGKNILIAVGNTPVFPT-VKG-VEHTISSD 24875 Query: 213 DIFWLKESPGKTSVPAAEDVALECAGFLTGIGLDTTVMMRSIPL-RGFDQQMSSLVTEHM 271 + F +KE+ + + +A+E + +G+++ + R L R FD+ + + + M Sbjct: 24876 EFFDIKEAK-RIGIIGGGYIAVELINVIKRLGIESYIFARGKRLLRKFDESIVNELENDM 25052 Query: 272 ESHGTQFLKGCVPSHIKKLPTNQLQVTWEDHASGKEDTGTFDTVLWAIGRVPETRTLNLE 331 + + + I+K+ L + D + D V++ +GR P T+ LNLE Sbjct: 25053 KKNNINIITMANVEEIEKVHDKNLTIYLNDGRKFEH----LDYVIYCVGRSPNTKNLNLE 25220 Query: 332 KAGISTNPKNQKIIVDAQEATSVPHIYAIGD---VAEGRP-------------------- 368 K I+T KN IIVD + T++ +I+A+GD V +G+ Sbjct: 25221 KLNITT--KNDYIIVDDNQRTNLKNIFAVGDCCMVKKGKELEDLNLLKLYDEQIYINNKK 25394 Query: 369 ----------ELTPTAIKAGKLLAQRLFGKSSTLMDYS---------------------- 396 +LTP AI AG+LLA R+F + +YS Sbjct: 25395 NDTEDSFYNVQLTPVAINAGRLLADRIFLNKTRKTNYSLIPTVIFSHPPIGTIGLSEEEA 25574 Query: 397 ---------NVYHAYYKPLEFTVADRDASQ---CYIKMVCMREPPQLVLGLHFLGPNAGE 444 +Y + + L F+V D + SQ YIK+VC+ + +L+ GLH +G NA E Sbjct: 25575 INIYGKENVKIYESKFTNLFFSVYDIEPSQKEKTYIKLVCVGK-EELIKGLHIIGLNADE 25751 Query: 445 VTQGFALGIKCGASYAQVMQTVGIHPTCSEEVVKLH 480 + QGFA+ +K A+ +T+ IHPT +EE+V LH Sbjct: 25752 IIQGFAVALKMNATKKDFDETIPIHPTAAEELVTLH 25859 Score = 32.0 bits (71), Expect = 0.64, Method: Composition-based stats. Identities = 11/12 (91%), Positives = 12/12 (100%) Frame = +2 Query: 85 LGGTCVNVGCIP 96 LGGTCVNVGC+P Sbjct: 24356 LGGTCVNVGCVP 24391 >Plasmodium_yoelii_yoelii_str._17XNL|MALPY01482|2002-09-10|ds- DNA|Plasmodium_yoelii_TIGR Length = 7932 Score = 87.0 bits (214), Expect = 2e-17, Method: Composition-based stats. Identities = 130/499 (26%), Positives = 199/499 (39%), Gaps = 64/499 (12%) Frame = +2 Query: 42 SFDLLVIGGGSGGLACAKEAAQLGKKVAVADYVEPSPRGTKWGLGGTCVNVGCIPKKLMH 101 S+D++VIGGG GG C+ Q K+ V + + LGGTC+N GCIP K Sbjct: 4241 SYDVIVIGGGPGGYVCSIRCGQ--NKLKVLNVNDDKK------LGGTCLNRGCIPSK--- 4387 Query: 102 QAALLGGMIRDAHHYGWEVAQPVQH------NWKTMAEAVQNH----VKSLNWGHRVQLQ 151 ++ AH+Y +E + N K E V H + +L G + Sbjct: 4388 ------SLLHIAHNY-YESKNKFKECGILIDNVKLDIEQVHKHKNKCMGNLADGISFLYK 4546 Query: 152 DRKVKYFNIKASFVDEHTVRGVDKGGKATLLSAEHIVIATGGRP-RYPTQ---------- 200 VK+ + S +D +T+ + +AE IVIATG +P P + Sbjct: 4547 KNNVKHIIGRGSIIDGNTILVETENEGQKKYTAERIVIATGSKPIEIPLKKLDDNNINDV 4726 Query: 201 --VKGALEYG----ITSDDIFWLKESPGKTSVPAAEDVALECAGFLTGIGLDTTVMMRSI 254 VK LEY TSDDI KE P S+ + LE + G D TV + Sbjct: 4727 ENVKDILEYDHKLIQTSDDILNFKEIPKTMSIIGGGVIGLEIGSVFSKFGSDVTVYEYNS 4906 Query: 255 PLRGF-DQQMSSLVTEHMESHGTQFL-KGCVPSHIKKLPTNQLQVTWEDHASGKEDTGTF 312 L GF D +S ++ + +E +F+ + N+ + D+ + + Sbjct: 4907 RLCGFLDPDVSKVLQKVLEKIKIKFMFNTSIIGGNLNTTNNEAILYARDNKTNQIKKVKS 5086 Query: 313 DTVLWAIGRVPETRTLNLEKAGISTNPKNQKIIVDAQ-EATSVPHIYAIGDVAEGRPELT 371 D VL +GR +NLEK I N KN+KI VD S P I AIGD +G L Sbjct: 5087 DIVLVCVGRKANLENINLEKLSIELN-KNKKIQVDEYFNVKSQPTIKAIGDAIDGS-MLA 5260 Query: 372 PTAIKAGKLLAQRLFGK----------------SSTLMDYSNVYHA------------YY 403 A + G ++A LF + S + + V Y Sbjct: 5261 HKAEEEGYIVADMLFNELKNNKKKKNHINYDLIPSVIYTHPEVASVGYNEQKCKELKLNY 5440 Query: 404 KPLEFTVADRDASQC------YIKMVCMREPPQLVLGLHFLGPNAGEVTQGFALGIKCGA 457 K + F A S+ IK++ ++ ++LG +G NA E+ ++ Sbjct: 5441 KSVSFPFAANSRSRTIDDYDGLIKLIVEKD-TNVILGSQIIGNNASELILPLSIYASHKG 5617 Query: 458 SYAQVMQTVGIHPTCSEEV 476 + + + + HPT SE + Sbjct: 5618 TSKNLSKIIYPHPTFSEVI 5674 >Plasmodium_yoelii_yoelii_str._17XNL|MALPY00156|2002-09-10|ds- DNA|Plasmodium_yoelii_TIGR Length = 21720 Score = 50.1 bits (118), Expect = 2e-06, Method: Composition-based stats. Identities = 85/359 (23%), Positives = 136/359 (37%), Gaps = 52/359 (14%) Frame = -1 Query: 43 FDLLVIGGGSGGLACAKEAAQLGKKVAVADYVEPSPRGTKWGLGGTCVNVGCIPKKLMHQ 102 +D+ ++G G GG A A A + KV + G + LGGTCVNVGCIP K + Sbjct: 20091 YDVAILGCGVGGHAAAINAIEKNLKVIIF-------AGNEESLGGTCVNVGCIPSKALLY 19933 Query: 103 AALLGGMIRDAH---HYGWE-----------------VAQPVQHNWKTMAEAVQNHVKSL 142 A +++ +YG +A + N + E QN +K L Sbjct: 19932 ATNKYRELKNISKLCNYGIYSNAYIDKEKDEIKSTQLIADSICINTNKLKEYTQNVIKKL 19753 Query: 143 NWGHRVQLQDRK-------VKYFNIKASFVDEHTVRGVDKGGKATLLSAEHIVIATGGRP 195 G +++ K V+ ++++T++ K K L A++I++ATG P Sbjct: 19752 KSGITHGMKNTKFNKNPQSVQVIYDHGYIINKNTIQ--SKKNK-QLYKAKNIILATGSIP 19582 Query: 196 RYPTQVKGALEYGITSDDIFWLKESPGKTSVPAAEDVALECAGFLTGIGLDTT------- 248 P + + TSD L+ S+ + LE + T +G + T Sbjct: 19581 NVPQNINVDHKTVFTSDQAINLQGLQNYISIIGMGIIGLEFSDIYTALGSEITFFEYSPE 19402 Query: 249 ---------------VMMRSIPLRGFDQQMSSLVTEHMESHGTQFLKGCVPSHIKKLPTN 293 V +++ P+ F L TE H K V + + TN Sbjct: 19401 FLPFVDTDIAKYFENVFLKTKPINYF------LNTEIKYVHPASNGKPVVIGYSLRTKTN 19240 Query: 294 QLQVTWEDHASGKE-DTGTFDTVLWAIGRVPETRTLNLEKAGISTNPKNQK--IIVDAQ 349 +G+ D+ L A GR P T + LE + N K K ++VD Q Sbjct: 19239 PDSTASTTQINGEHVKELHVDSCLVATGRKPNTENIGLE----NLNAKMNKGFVLVDDQ 19075 >Plasmodium_yoelii_yoelii_str._17XNL|MALPY02913|2002-09-10|ds- DNA|Plasmodium_yoelii_TIGR Length = 3288 Score = 33.5 bits (75), Expect = 0.24, Method: Composition-based stats. Identities = 29/109 (26%), Positives = 46/109 (42%), Gaps = 5/109 (4%) Frame = +2 Query: 178 KATLLSAEHIVIATGGRPRYPTQVKGALEYGITSDDIFWLK---ESPGKTSVPAAEDVAL 234 + T+ E +++ATGGRPR + Y T DD F L+ E+ K ++ + Sbjct: 2138 EGTIYRFEKLLLATGGRPRRFPFGGDDILYFRTVDDYFRLRTLTETRRKFAIIGGGFIGS 2317 Query: 235 ECAGFLTGIGLDTTVMMRS--IPLRGFDQQMSSLVTEHMESHGTQFLKG 281 E A L IG D ++ I R F + + + G + L G Sbjct: 2318 EIAAALASIGKDVVMIFPEACIGARVFPGNLCRFLDGYYRDQGVELLSG 2464 TBLASTN 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= SPP00000081_1.0 # Protein # Thioredoxin reductase 3 (TR3) # Mus musculus # Complete (615 letters) Database: genome.fa 2960 sequences; 20,171,213 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Plasmodium_yoelii_yoelii_str._17XNL|MALPY00659|2002-09-10|ds-DNA... 402 e-112 Plasmodium_yoelii_yoelii_str._17XNL|MALPY00317|2002-09-10|ds-DNA... 158 8e-39 Plasmodium_yoelii_yoelii_str._17XNL|MALPY01482|2002-09-10|ds-DNA... 112 4e-25 Plasmodium_yoelii_yoelii_str._17XNL|MALPY00156|2002-09-10|ds-DNA... 47 2e-05 Plasmodium_yoelii_yoelii_str._17XNL|MALPY02913|2002-09-10|ds-DNA... 46 6e-05 Plasmodium_yoelii_yoelii_str._17XNL|MALPY02922|2002-09-10|ds-DNA... 44 3e-04 Plasmodium_yoelii_yoelii_str._17XNL|MALPY02825|2002-09-10|ds-DNA... 36 0.062 Plasmodium_yoelii_yoelii_str._17XNL|MALPY01588|2002-09-10|ds-DNA... 34 0.20 Plasmodium_yoelii_yoelii_str._17XNL|MALPY01678|2002-09-10|ds-DNA... 33 0.39 Plasmodium_yoelii_yoelii_str._17XNL|MALPY01068|2002-09-10|ds-DNA... 30 2.8 Plasmodium_yoelii_yoelii_str._17XNL|MALPY00707|2002-09-10|ds-DNA... 29 5.6 Plasmodium_yoelii_yoelii_str._17XNL|MALPY00157|2002-09-10|ds-DNA... 29 5.7 Plasmodium_yoelii_yoelii_str._17XNL|MALPY00865|2002-09-10|ds-DNA... 29 5.7 >Plasmodium_yoelii_yoelii_str._17XNL|MALPY00659|2002-09-10|ds- DNA|Plasmodium_yoelii_TIGR Length = 14426 Score = 402 bits (1032), Expect = e-112, Method: Composition-based stats. Identities = 229/503 (45%), Positives = 304/503 (60%), Gaps = 19/503 (3%) Frame = -2 Query: 123 DDSAHDYDXXXXXXXXXXXXCAKEAANLGKKVMVLDFVVPSPQGTTWGLGGTCVNVGCIP 182 D+S +DYD AKEAA+ G KV++ DFV PS QGT WG+GGTCVNVGC+P Sbjct: 13348 DNSNYDYDYIVIGGGPGGMASAKEAASHGAKVLLFDFVKPSSQGTKWGIGGTCVNVGCVP 13169 Query: 183 KKLMHQAALLGHALQ-DAKKYGWEYNQQVKHNWEAMTEAIQSHIGSLNWGYRVTLREKGV 241 KKLMH A +G + D+ KYGWE + +KH+W + +QSHI SLN+ Y V L+ V Sbjct: 13168 KKLMHYAGNMGTLFKSDSDKYGWECDN-LKHDWNKLVSTVQSHIRSLNFSYMVGLKSSKV 12992 Query: 242 TYVNSFGEFVDLHKIKATNK--KGQETFYTASKFVIATGERPRYLG-IQGDKEYCITSDD 298 Y+N + D + + K +E T +IATG RP + G KE ITSDD Sbjct: 12991 KYINGLAKLKDKNTVSYYLKGDTSKEDCVTGKYILIATGCRPNIPDDVIGAKELSITSDD 12812 Query: 299 LFSLPYCPGCTLVVGASYVGLECAGFLAGLGLDVTVMVRSVLLRGFDQEMAEKVGSYLEQ 358 +FSL PG TLVVGASYV LECAGFL LG D T+ VRS++LRGFDQ+ A K+ Y+E+ Sbjct: 12811 IFSLKKNPGKTLVVGASYVALECAGFLNSLGCDTTISVRSIILRGFDQQCANKIKLYMEE 12632 Query: 359 QGVKFQRKFTPI-LVQQLEKGLPGKLKVVAKSTEGPETVEGIYNTVLLAIGRDSCTRKIG 417 QGV F P L ++ +K L + +TE +++TVL AIGR + Sbjct: 12631 QGVTFMCGVLPKKLTKENDKIL---VHFNNNTTE-------LFDTVLYAIGRKGDIDGLN 12482 Query: 418 LEKIGVKINEKNGKIPVNDVEQTNVPHVYAIGDILDGKPELTPVAIQAGKLLARRLFGVS 477 LEK+ + IN N KI + TN+P+++A+GDI + PEL PVAI+AG++LARRLF S Sbjct: 12481 LEKLNININNNNNKIITDKFSCTNIPNIFAVGDIAENVPELAPVAIKAGEILARRLFKNS 12302 Query: 478 LEKCDYINIPTTVFTPLEYGCCGLSEEKAIEMYKKENLEVYHTLFWPLEWTVAGRD---- 533 E Y IPT+++TP+EYG CG SEE+A E + K N+E++ F LE + R Sbjct: 12301 NEIMKYNLIPTSIYTPIEYGSCGYSEEQAYEQFGKNNIEIFLQEFNNLEISAVHRTKHLK 12122 Query: 534 ----------NNTCYAKIICNKFDNERVVGFHLLGPNAGEITQGFAAAMKCGLTKQLLDD 583 ++TC +K++C K ++ RV+GFH +GPNAGE+TQG A A+K K D+ Sbjct: 12121 VQKDEYDVDISSTCLSKLVCLKNEDNRVIGFHYVGPNAGEVTQGMALALKLNAKKSDFDN 11942 Query: 584 TIGIHPTCGEVFTTLEITKSSGL 606 IGIHPT E F L IT SSGL Sbjct: 11941 CIGIHPTDAESFMNLSITLSSGL 11873 >Plasmodium_yoelii_yoelii_str._17XNL|MALPY00317|2002-09-10|ds- DNA|Plasmodium_yoelii_TIGR Length = 33648 Score = 158 bits (399), Expect = 8e-39, Method: Composition-based stats. Identities = 132/457 (28%), Positives = 214/457 (46%), Gaps = 43/457 (9%) Frame = +3 Query: 185 LMHQAALLGHALQDAKKYGWEYNQQVKHNWEAMTEAIQSHIGSLNWGYRVTLREKGVTYV 244 +M AA + LQ+++ YG ++ + N + E +I LN YR L+ V Sbjct: 24528 IMFNAASIHDILQNSRHYG--FDTRFTFNLPQLVERRDKYIRRLNDIYRNNLKNDNVEVY 24701 Query: 245 NSFGEFVDLHK--IKATNK----KGQETFYTASKFVIATGERPRYLGIQGDKEYCITSDD 298 ++ K IK+ NK + +IA G P + ++G E+ I+SD+ Sbjct: 24702 EGTASLINERKVLIKSKNKSEDDEKNHEIIEGKNILIAVGNTPVFPTVKG-VEHTISSDE 24878 Query: 299 LFSLPYCPGCTLVVGASYVGLECAGFLAGLGLDVTVMVRSV-LLRGFDQEMAEKVGSYLE 357 F + ++G Y+ +E + LG++ + R LLR FD+ + ++ + ++ Sbjct: 24879 FFDIKEAKR-IGIIGGGYIAVELINVIKRLGIESYIFARGKRLLRKFDESIVNELENDMK 25055 Query: 358 QQGVKFQRKFTPILVQQLEKGLPGKLKVVAKSTEGPETVEGIYNTVLLAIGRDSCTRKIG 417 + + T V+++EK L + E ++ V+ +GR T+ + Sbjct: 25056 KNNINI---ITMANVEEIEKVHDKNLTIYLNDGRKFEHLD----YVIYCVGRSPNTKNLN 25214 Query: 418 LEKIGVKINEKNGKIPVNDVEQTNVPHVYAIGD---ILDGKP------------------ 456 LEK+ I KN I V+D ++TN+ +++A+GD + GK Sbjct: 25215 LEKL--NITTKNDYIIVDDNQRTNLKNIFAVGDCCMVKKGKELEDLNLLKLYDEQIYINN 25388 Query: 457 ------------ELTPVAIQAGKLLARRLFGVSLEKCDYINIPTTVFTPLEYGCCGLSEE 504 +LTPVAI AG+LLA R+F K +Y IPT +F+ G GLSEE Sbjct: 25389 KKNDTEDSFYNVQLTPVAINAGRLLADRIFLNKTRKTNYSLIPTVIFSHPPIGTIGLSEE 25568 Query: 505 KAIEMYKKENLEVYHTLFWPLEWTV---AGRDNNTCYAKIICNKFDNERVVGFHLLGPNA 561 +AI +Y KEN+++Y + F L ++V Y K++C E + G H++G NA Sbjct: 25569 EAINIYGKENVKIYESKFTNLFFSVYDIEPSQKEKTYIKLVCVG-KEELIKGLHIIGLNA 25745 Query: 562 GEITQGFAAAMKCGLTKQLLDDTIGIHPTCGEVFTTL 598 EI QGFA A+K TK+ D+TI IHPT E TL Sbjct: 25746 DEIIQGFAVALKMNATKKDFDETIPIHPTAAEELVTL 25856 Score = 30.8 bits (68), Expect = 1.8, Method: Composition-based stats. Identities = 11/12 (91%), Positives = 12/12 (100%) Frame = +2 Query: 171 LGGTCVNVGCIP 182 LGGTCVNVGC+P Sbjct: 24356 LGGTCVNVGCVP 24391 >Plasmodium_yoelii_yoelii_str._17XNL|MALPY01482|2002-09-10|ds- DNA|Plasmodium_yoelii_TIGR Length = 7932 Score = 112 bits (281), Expect = 4e-25, Method: Composition-based stats. Identities = 122/455 (26%), Positives = 201/455 (44%), Gaps = 31/455 (6%) Frame = +2 Query: 171 LGGTCVNVGCIPKK-LMHQAALLGHALQDAKKYGWEYNQQVKHNWEAMTEAIQSHIGSLN 229 LGGTC+N GCIP K L+H A + K+ G + VK + E + + +G+L Sbjct: 4346 LGGTCLNRGCIPSKSLLHIAHNYYESKNKFKECGILIDN-VKLDIEQVHKHKNKCMGNLA 4522 Query: 230 WGYRVTLREKGVTYVNSFGEFVDLHKIKATNKKGQETFYTASKFVIATGERPRYLGIQG- 288 G ++ V ++ G +D + I + + YTA + VIATG +P + ++ Sbjct: 4523 DGISFLYKKNNVKHIIGRGSIIDGNTILVETENEGQKKYTAERIVIATGSKPIEIPLKKL 4702 Query: 289 -----------------DKEYCITSDDLFSLPYCPGCTLVVGASYVGLECAGFLAGLGLD 331 D + TSDD+ + P ++G +GLE + G D Sbjct: 4703 DDNNINDVENVKDILEYDHKLIQTSDDILNFKEIPKTMSIIGGGVIGLEIGSVFSKFGSD 4882 Query: 332 VTVMVRSVLLRGF-DQEMAEKVGSYLEQQGVKFQRKFTPILVQQLEKGLPGKLKVVAKST 390 VTV + L GF D ++++ + LE+ +KF F ++ + + A+ Sbjct: 4883 VTVYEYNSRLCGFLDPDVSKVLQKVLEKIKIKFM--FNTSIIGGNLNTTNNEAILYARDN 5056 Query: 391 EGPETVEGIYNTVLLAIGRDSCTRKIGLEKIGVKINEKNGKIPVNDVEQTNV---PHVYA 447 + + + + VL+ +GR + I LEK+ +++N KN KI V+ E NV P + A Sbjct: 5057 KTNQIKKVKSDIVLVCVGRKANLENINLEKLSIELN-KNKKIQVD--EYFNVKSQPTIKA 5227 Query: 448 IGDILDGKPELTPVAIQAGKLLARRLFG------VSLEKCDYINIPTTVFTPLEYGCCGL 501 IGD +DG L A + G ++A LF +Y IP+ ++T E G Sbjct: 5228 IGDAIDGS-MLAHKAEEEGYIVADMLFNELKNNKKKKNHINYDLIPSVIYTHPEVASVGY 5404 Query: 502 SEEKAIEMYKKENLEVYHTLFWPLEWTVAGR--DNNTCYAKIICNKFDNERVVGFHLLGP 559 +E+K E+ K N Y ++ +P R D+ K+I K D ++G ++G Sbjct: 5405 NEQKCKEL--KLN---YKSVSFPFAANSRSRTIDDYDGLIKLIVEK-DTNVILGSQIIGN 5566 Query: 560 NAGEITQGFAAAMKCGLTKQLLDDTIGIHPTCGEV 594 NA E+ + T + L I HPT EV Sbjct: 5567 NASELILPLSIYASHKGTSKNLSKIIYPHPTFSEV 5671 >Plasmodium_yoelii_yoelii_str._17XNL|MALPY00156|2002-09-10|ds- DNA|Plasmodium_yoelii_TIGR Length = 21720 Score = 47.4 bits (111), Expect = 2e-05, Method: Composition-based stats. Identities = 72/313 (23%), Positives = 120/313 (38%), Gaps = 42/313 (13%) Frame = -1 Query: 166 GTTWGLGGTCVNVGCIPKKLMHQAALLGHALQDAKK---YGWEYNQQVKH---------- 212 G LGGTCVNVGCIP K + A L++ K YG N + Sbjct: 20001 GNEESLGGTCVNVGCIPSKALLYATNKYRELKNISKLCNYGIYSNAYIDKEKDEIKSTQL 19822 Query: 213 -------NWEAMTEAIQSHIGSLNWGYRVTLRE-------KGVTYVNSFGEFVDLHKIKA 258 N + E Q+ I L G ++ + V + G ++ + I++ Sbjct: 19821 IADSICINTNKLKEYTQNVIKKLKSGITHGMKNTKFNKNPQSVQVIYDHGYIINKNTIQS 19642 Query: 259 TNKKGQETFYTASKFVIATGERPRY-LGIQGDKEYCITSDDLFSLPYCPGCTLVVGASYV 317 K + Y A ++ATG P I D + TSD +L ++G + Sbjct: 19641 ---KKNKQLYKAKNIILATGSIPNVPQNINVDHKTVFTSDQAINLQGLQNYISIIGMGII 19471 Query: 318 GLECAGFLAGLGLDVTVMVRSVLLRGF-DQEMAEKVGS-YLEQQGVKFQRKFTPILVQQL 375 GLE + LG ++T S F D ++A+ + +L+ + + + V Sbjct: 19470 GLEFSDIYTALGSEITFFEYSPEFLPFVDTDIAKYFENVFLKTKPINYFLNTEIKYVHPA 19291 Query: 376 EKGLPGKLKVVAKSTEGPETVEGI------------YNTVLLAIGRDSCTRKIGLEKIGV 423 G P + ++ P++ ++ L+A GR T IGLE + Sbjct: 19290 SNGKPVVIGYSLRTKTNPDSTASTTQINGEHVKELHVDSCLVATGRKPNTENIGLENLNA 19111 Query: 424 KINEKNGKIPVND 436 K+N+ G + V+D Sbjct: 19110 KMNK--GFVLVDD 19078 >Plasmodium_yoelii_yoelii_str._17XNL|MALPY02913|2002-09-10|ds- DNA|Plasmodium_yoelii_TIGR Length = 3288 Score = 45.8 bits (107), Expect = 6e-05, Method: Composition-based stats. Identities = 55/199 (27%), Positives = 84/199 (42%), Gaps = 6/199 (3%) Frame = +2 Query: 251 VDLHKIKATNKKGQETFYTASKFVIATGERPRYLGIQGDK-EYCITSDDLFSLPYCPGCT 309 +DL + T+ +G T Y K ++ATG RPR GD Y T DD F L Sbjct: 2105 LDLAEKSVTDDEG--TIYRFEKLLLATGGRPRRFPFGGDDILYFRTVDDYFRLRTLTETR 2278 Query: 310 ---LVVGASYVGLECAGFLAGLGLDVTVMVRSVLL--RGFDQEMAEKVGSYLEQQGVKFQ 364 ++G ++G E A LA +G DV ++ + R F + + Y QGV+ Sbjct: 2279 RKFAIIGGGFIGSEIAAALASIGKDVVMIFPEACIGARVFPGNLCRFLDGYYRDQGVELL 2458 Query: 365 RKFTPILVQQLEKGLPGKLKVVAKSTEGPETVEGIYNTVLLAIGRDSCTRKIGLEKIGVK 424 T + + GL +A G E + + + V+ IG + TR E G+ Sbjct: 2459 SGRTVTGLVREGDGLR-----LALGETGEEVL--VVDGVVAGIGIEPXTRLA--EAAGLP 2611 Query: 425 INEKNGKIPVNDVEQTNVP 443 + G I VND + +P Sbjct: 2612 V---EGGIVVNDFCRPGIP 2659 >Plasmodium_yoelii_yoelii_str._17XNL|MALPY02922|2002-09-10|ds- DNA|Plasmodium_yoelii_TIGR Length = 3310 Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats. Identities = 53/206 (25%), Positives = 88/206 (42%), Gaps = 15/206 (7%) Frame = +2 Query: 263 GQETFYTASKFVIATGERPRYLGIQGDKEY-------CITSDDLFSLPYCPGCTLVVGAS 315 G YT +IATG RYLG+ ++ Y C T D F Y V+G Sbjct: 2675 GDAGVYTCDALIIATGASARYLGLPSEEAYKGRGVSACATCDGFF---YKGKHVAVIGGG 2845 Query: 316 YVGLECAGFLAGLGLDVTVMVRSVLLRGFDQEMAEKVGSYLEQQGVKFQRKFTPILVQQL 375 +E A +L+ + VTV+ R R ++ +++K+ V + + +L + L Sbjct: 2846 NTAVEEALYLSNIAAKVTVVHRRDKFRS-EKILSDKLLERAANGNVSIE--WNSVLEEVL 3016 Query: 376 --EKGLPG-KLKVVAKSTEGPETVEGIYNTVLLAIGRDSCTRKIGLEKIGVKINEKNGKI 432 + G+ G +++ V T +EG++ +AIG T E ++ +NG I Sbjct: 3017 GDDMGVTGMRIRNVQDGTSKDIALEGVF----IAIGHSPNT-----EIFAGQLGMRNGYI 3169 Query: 433 PVNDVEQ-----TNVPHVYAIGDILD 453 V + T V V+A GD+ D Sbjct: 3170 VVKGGSEGGATATTVEGVFAAGDVSD 3247 >Plasmodium_yoelii_yoelii_str._17XNL|MALPY02825|2002-09-10|ds- DNA|Plasmodium_yoelii_TIGR Length = 3021 Score = 35.8 bits (81), Expect = 0.062, Method: Composition-based stats. Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 8/73 (10%) Frame = +2 Query: 58 FSSLGVVYNILELDQVDDGASV--------QEVLTEISNQKTVPNIFVNKVHVGGCDRTF 109 +S L + NIL+L++ + +V ++ L SN T P +++N VGG D+ Sbjct: 2648 YSKLAI--NILKLNKAKEIYTVNILNDDMLKQSLKIYSNWPTFPQLYINGKFVGGIDKIQ 2821 Query: 110 QAHQNGLLQKLLQ 122 + H N L+++LQ Sbjct: 2822 ELHDNKKLEEMLQ 2860 >Plasmodium_yoelii_yoelii_str._17XNL|MALPY01588|2002-09-10|ds- DNA|Plasmodium_yoelii_TIGR Length = 25526 Score = 34.3 bits (77), Expect = 0.20, Method: Composition-based stats. Identities = 15/44 (34%), Positives = 26/44 (59%) Frame = +2 Query: 79 VQEVLTEISNQKTVPNIFVNKVHVGGCDRTFQAHQNGLLQKLLQ 122 +++ L SN T P +++N VGG D+ + H N L+++LQ Sbjct: 14 LKQSLKIYSNWPTFPQLYINGKFVGGIDKIQELHDNKKLEEMLQ 145 >Plasmodium_yoelii_yoelii_str._17XNL|MALPY01678|2002-09-10|ds- DNA|Plasmodium_yoelii_TIGR Length = 7591 Score = 33.1 bits (74), Expect = 0.39, Method: Composition-based stats. Identities = 13/21 (61%), Positives = 16/21 (76%) Frame = +2 Query: 86 ISNQKTVPNIFVNKVHVGGCD 106 IS + +VP IF+NK VGGCD Sbjct: 4955 ISGKSSVPRIFINKEFVGGCD 5017 >Plasmodium_yoelii_yoelii_str._17XNL|MALPY01068|2002-09-10|ds- DNA|Plasmodium_yoelii_TIGR Length = 5415 Score = 30.4 bits (67), Expect = 2.8, Method: Composition-based stats. Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 2/79 (2%) Frame = +2 Query: 191 LLGHALQDAKKYGWEYNQQVKHNWEAM--TEAIQSHIGSLNWGYRVTLREKGVTYVNSFG 248 L+G ++ +G E NQ + +N ++ T I SH+G+ + L +G+ +N Sbjct: 2675 LMGSKGNNSYLFGNETNQNIMNNNTSLFSTGNIYSHLGNEQNNLQNILNREGINNINKLK 2854 Query: 249 EFVDLHKIKATNKKGQETF 267 E+ + KIK TN E + Sbjct: 2855 EYYENLKIK-TNVLNAEIY 2908 >Plasmodium_yoelii_yoelii_str._17XNL|MALPY00707|2002-09-10|ds- DNA|Plasmodium_yoelii_TIGR Length = 12029 Score = 29.3 bits (64), Expect = 5.6, Method: Composition-based stats. Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 3/51 (5%) Frame = +2 Query: 499 CGLSEEKAI---EMYKKENLEVYHTLFWPLEWTVAGRDNNTCYAKIICNKF 546 C + EKAI E+Y + N + Y+ ++ P ++ N+ C K CN+F Sbjct: 6701 CDKNLEKAIKFVEIYDELNEDYYNGIYSPYNQLLSTLSNDYCNLKNKCNQF 6853 >Plasmodium_yoelii_yoelii_str._17XNL|MALPY00157|2002-09-10|ds- DNA|Plasmodium_yoelii_TIGR Length = 15550 Score = 29.3 bits (64), Expect = 5.7, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 1/74 (1%) Frame = +2 Query: 202 YGWEYNQQVKHNWEAMTEAIQSHIGSLNWGYRVTLREKGVTYVNSFGEFVDLHK-IKATN 260 + ++ NQ KHN + + SH+ + N Y + + G +F+D K + N Sbjct: 14030 FSYQLNQSTKHNTTKIYDFYNSHVKN-NDKYEKFINDSG--RYTGLNDFIDKQKDLLNIN 14200 Query: 261 KKGQETFYTASKFV 274 K FY ASK + Sbjct: 14201 IKDLSKFYDASKLI 14242 >Plasmodium_yoelii_yoelii_str._17XNL|MALPY00865|2002-09-10|ds- DNA|Plasmodium_yoelii_TIGR Length = 10398 Score = 29.3 bits (64), Expect = 5.7, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 1/74 (1%) Frame = +3 Query: 202 YGWEYNQQVKHNWEAMTEAIQSHIGSLNWGYRVTLREKGVTYVNSFGEFVDLHK-IKATN 260 + ++ NQ KHN + + SH+ + N Y + + G +F+D K + N Sbjct: 855 FSYQLNQSTKHNTTKIYDFYNSHVKN-NDKYEKFINDSG--RYTGLNDFIDKQKDLLNIN 1025 Query: 261 KKGQETFYTASKFV 274 K FY ASK + Sbjct: 1026IKDLSKFYDASKLI 1067 Database: genome.fa Posted date: Feb 25, 2008 11:55 AM Number of letters in database: 20,171,213 Number of sequences in database: 2960 Lambda K H 0.317 0.134 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2960 Number of Hits to DB: 34,392,725 Number of extensions: 449874 Number of successful extensions: 1400 Number of sequences better than 10.0: 14 Number of HSP's gapped: 1375 Number of HSP's successfully gapped: 36 Length of database: 6,723,737 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 45 (21.9 bits)