Command line: [exonerate -m p2g Efsec_falciparum.txt -t subseq_yoelii_EFsec.fa --showtargetgff] Hostname: [am75236] C4 Alignment: ------------ Query: gi|23510674|emb|CAD49059.1| selenocysteine-specific elongation factor selB homologue, putative [Plasmodium falciparum 3D7] Target: Plasmodium_yoelii_yoelii_str._17XNL|MALPY00118|2002-09-10|ds-DNA|Plasmodium_yoelii_TIGR:subseq(8000,4000) [revcomp] Model: protein2genome Raw score: 547 Query range: 390 -> 572 Target range: 1377 -> 828 391 : AsnIleLysGluIleIleAsnValLeuThrAsnIleIleLysIleProGluArgGluIleSe : 411 ||||||!!.|||:!!|||.!.:!!|||! !!:!:!!||||||||||||! !||||||! !!: AsnIleAsnGluLeuIleGluLeuLeuLysSerValIleLysIleProValArgGluThrAs 1377 : AATATAAATGAACTTATAGAATTATTAAAAAGTGTTATAAAAATTCCAGTAAGAGAAACAAA : 1317 412 : r<->ThrTyrGluAspPheTyrPheLeuTyrAspHisSerPheAsnIleLysGlyLysGlyT : 431 ! !:!!:!|||||||||||||||||||||||||||||||||.!.|||||||||||||||! nProSerPheGluAspPheTyrPheLeuTyrAspHisSerPheGluIleLysGlyLysGlyM 1316 : TCCAAGTTTTGAAGATTTTTATTTTTTATATGACCATTCATTTGAAATAAAGGGGAAAGGTA : 1254 432 : hrIlePheThrGlyThrValIleLysGlyLysIleLysIleAsnCysAsnValThrIleLeu : 451 !:!!!:!|||||||||||||||||||||||||||! !||||||! |||:!!:!!|||||| etValTyrThrGlyThrValIleLysGlyLysIleThrIleAsnSerAsnIleSerIleLeu 1253 : TGGTATATACAGGAACTGTTATAAAAGGTAAAATAACAATAAATTCGAATATTTCTATATTG : 1194 452 : ProLeuAsnGluThrGlyLysIleLysGluIleGlnSerPheLysLysAsnValHisGluGl : 472 ||||||||| !! !||||||||||||!!:||||||||||||||||||!!. ! ! ||||| ProLeuAsnIleLysGlyLysIleLysAspIleGlnSerPheLysLysLysGlnLysGluGl 1193 : CCTTTAAATATAAAAGGAAAAATTAAAGATATACAAAGTTTTAAAAAAAAACAAAAAGAAGG : 1131 473 : yLysLysGlySerArgLeuSerLeuLeuIleLeuAsnAsnAsnIleLysAsnIleLysLysA : 493 |! !..!|||!:!|||||||||!!!||||||! !:!!:!!||||||||||||:!:|||||| yThrSerGlyAsnArgLeuSerPheLeuIleSerHisAspAsnIleLysAsnLeuLysLysV 1130 : TACATCAGGTAATAGGTTATCATTTTTAATATCACATGATAATATTAAAAATTTGAAAAAAG : 1068 494 : snGluArgGlyValIleIleTyrGluAsnSerAsnIleSerTyrPheSerMetPheIleCys : 513 |||||||||:!!|||:!!:!!|||!!.|||||||||!!! !!|||!!!:!:||||||||| alGluArgGlyIleIleValHisGluLysSerAsnIleCysAsnPheThrValPheIleCys 1067 : TAGAAAGAGGCATAATTGTTCATGAAAAATCAAATATATGCAATTTTACTGTATTTATTTGT : 1008 514 : LysValLysGlnValGluPheTyrLysLysAspLeuAsnAsnLeuGluHisPheIleCysIl : 534 |||:!!||| !:!!|||||||||||||||..!:!!!!.||| !||| !!.! !||||| LysIleLysLeuIleGluPheTyrLysLysSerIleLysAsnLysGluLeuLeuThrCysIl 1007 : AAAATAAAATTAATAGAATTTTATAAAAAAAGTATAAAAAATAAAGAATTGTTAACATGCAT : 945 535 : eIleGlyPheSerSerThrGluCysTyrGlyTyrPhePheLysLysIleLysAsnLysTyrG : 555 ||||||||||:!!|||:!!.!.! !||||||!:!||||||||||||:!!|||!.. ! !| eIleGlyPheAlaSerSerHisSerTyrGlyPhePhePheLysLysLeuLysThrAspProG 944 : AATTGGTTTTGCTTCATCACATTCTTATGGCTTTTTTTTTAAAAAGTTAAAAACAGACCCCG : 882 556 : luThrAsnGluSerLysLysIleAsnTyrLysGluAsnSerGlnGlyHisAsp : 572 ||! !.!.:!!!!!! !!. :!! !!!!.! !:!!!:!.!.||||||:!! luLysGluGlnThrIleAsnGlyHisAsnAsnGlyHisAsnAsnGlyHisAsn 881 : AAAAGGAGCAAACTATTAATGGGCATAATAATGGGCATAATAATGGGCATAAT : 829 vulgar: gi|23510674|emb|CAD49059.1| 390 572 . Plasmodium_yoelii_yoelii_str._17XNL|MALPY00118|2002-09-10|ds-DNA|Plasmodium_yoelii_TIGR:subseq(8000,4000) 1377 828 - 547 M 21 63 G 0 3 M 161 483 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome 1.4.0 ##date 2008-03-06 ##type DNA # # # seqname source feature start end score strand frame attributes # Plasmodium_yoelii_yoelii_str._17XNL|MALPY00118|2002-09-10|ds-DNA|Plasmodium_yoelii_TIGR:subseq(8000,4000) exonerate:protein2genome gene 829 1377 547 - . gene_id 1 ; sequence gi|23510674|emb|CAD49059.1| ; gene_orientation . Plasmodium_yoelii_yoelii_str._17XNL|MALPY00118|2002-09-10|ds-DNA|Plasmodium_yoelii_TIGR:subseq(8000,4000) exonerate:protein2genome cds 829 1377 . - . Plasmodium_yoelii_yoelii_str._17XNL|MALPY00118|2002-09-10|ds-DNA|Plasmodium_yoelii_TIGR:subseq(8000,4000) exonerate:protein2genome exon 829 1377 . - . insertions 3 ; deletions 0 Plasmodium_yoelii_yoelii_str._17XNL|MALPY00118|2002-09-10|ds-DNA|Plasmodium_yoelii_TIGR:subseq(8000,4000) exonerate:protein2genome similarity 829 1377 547 - . alignment_id 1 ; Query gi|23510674|emb|CAD49059.1| ; Align 1378 391 63 ; Align 1312 412 483 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|23510674|emb|CAD49059.1| selenocysteine-specific elongation factor selB homologue, putative [Plasmodium falciparum 3D7] Target: Plasmodium_yoelii_yoelii_str._17XNL|MALPY00118|2002-09-10|ds-DNA|Plasmodium_yoelii_TIGR:subseq(8000,4000) [revcomp] Model: protein2genome Raw score: 406 Query range: 131 -> 248 Target range: 1836 -> 1488 132 : AspGluGluIleIleGlnIleCysLeuValAspCysProGlyHisHisSerLeuLeuLysSe : 152 !!:.!.|||:!!||||||||||||||||||||||||||||||||||||||||||:!!|||!! GluAsnGluLeuIleGlnIleCysLeuValAspCysProGlyHisHisSerLeuIleLysCy 1836 : GAAAATGAGTTAATACAAATATGCTTAGTAGATTGTCCTGGCCATCATTCTCTAATAAAATG : 1776 153 : rIleIleMetGlySerGluIleThrAspIleIleIleLeuValIleAspIleAsnLysGlyI : 173 !|||:!!||||||:!!:!!|||! !|||!!:|||.!!||||||||||||||||||||||||| sIleValMetGlyAlaLysIleMetAspMetIlePheLeuValIleAspIleAsnLysGlyI 1775 : CATAGTAATGGGGGCAAAAATTATGGATATGATTTTTTTAGTTATAGATATAAATAAAGGGA : 1713 174 : leGlnLysGlnThrIleGluCysLeuValLeuCysLysIleIleAsnCysAspIleIleIle : 193 |||||||||||||||||||||||||||||||||||:!!.!!:!!!!. !!|||||||||||| leGlnLysGlnThrIleGluCysLeuValLeuCysGlnPheValLysSerAspIleIleIle 1712 : TACAAAAACAAACAATAGAGTGCTTAGTTTTATGCCAATTTGTAAAAAGTGATATTATTATT : 1653 194 : ValLeuAsnLysIleAspLeuIleProLeuHisLeuArgGluLysLysIleAsnLeuMetLy : 214 :!!|||||||||||||||||||||||||||||| !|||||||||||||||||| !||||| IleLeuAsnLysIleAspLeuIleProLeuHisGluArgGluLysLysIleAsnThrMetLy 1652 : ATTCTAAATAAAATTGATTTAATACCTTTACATGAAAGAGAAAAAAAAATTAACACCATGAA : 1590 215 : sLysLysIleGlnGluAlaPheTyrLysPheLysSerLeuGlnSerLeuAsnTyrHisIleV : 235 ||||||||||:!!!!:|||.!. !!!:! ! !||||||:!!!.!|||:::|||:!!|||| sLysLysIleLysAspAlaIleAsnArg---ThrSerLeuLysLysLeuSerTyrTyrIleV 1589 : AAAAAAAATTAAAGACGCAATAAATAGA---ACATCTCTAAAAAAGTTGTCATATTACATAG : 1530 236 : alSerIleSerAlaAsnValLysGlyLysAspAsnLysAsp : 248 |||||:!!||||||||| !|||..!:!!:!!:!!!!.!!: alSerLeuSerAlaAsnLysLysAsnGlnAsnAspAsnGlu 1529 : TTAGCTTATCTGCTAACAAGAAAAATCAAAATGATAACGAA : 1489 vulgar: gi|23510674|emb|CAD49059.1| 131 248 . Plasmodium_yoelii_yoelii_str._17XNL|MALPY00118|2002-09-10|ds-DNA|Plasmodium_yoelii_TIGR:subseq(8000,4000) 1836 1488 - 406 M 92 276 G 1 0 M 24 72 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome 1.4.0 ##date 2008-03-06 ##type DNA # # # seqname source feature start end score strand frame attributes # Plasmodium_yoelii_yoelii_str._17XNL|MALPY00118|2002-09-10|ds-DNA|Plasmodium_yoelii_TIGR:subseq(8000,4000) exonerate:protein2genome gene 1489 1836 406 - . gene_id 2 ; sequence gi|23510674|emb|CAD49059.1| ; gene_orientation . Plasmodium_yoelii_yoelii_str._17XNL|MALPY00118|2002-09-10|ds-DNA|Plasmodium_yoelii_TIGR:subseq(8000,4000) exonerate:protein2genome cds 1489 1836 . - . Plasmodium_yoelii_yoelii_str._17XNL|MALPY00118|2002-09-10|ds-DNA|Plasmodium_yoelii_TIGR:subseq(8000,4000) exonerate:protein2genome exon 1489 1836 . - . insertions 0 ; deletions 1 Plasmodium_yoelii_yoelii_str._17XNL|MALPY00118|2002-09-10|ds-DNA|Plasmodium_yoelii_TIGR:subseq(8000,4000) exonerate:protein2genome similarity 1489 1836 406 - . alignment_id 2 ; Query gi|23510674|emb|CAD49059.1| ; Align 1837 132 276 ; Align 1561 225 72 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|23510674|emb|CAD49059.1| selenocysteine-specific elongation factor selB homologue, putative [Plasmodium falciparum 3D7] Target: Plasmodium_yoelii_yoelii_str._17XNL|MALPY00118|2002-09-10|ds-DNA|Plasmodium_yoelii_TIGR:subseq(8000,4000) [revcomp] Model: protein2genome Raw score: 369 Query range: 628 -> 863 Target range: 939 -> 228 629 : GlyAsnLysAsnGluHisSerAspAspIleIleLysAsnGluHisGlyGluAspIleAsnLysA : 650 ||| ! :::..!|||||| !!! !.!!.!! !!.:!! ! !||| !.!.|||. GlyPheAlaSerSerHisSerTyrGlyPhePhePheLysLysLeuLysThrAspProGluLysG 939 : GGTTTTGCTTCATCACATTCTTATGGCTTTTTTTTTAAAAAGTTAAAAACAGACCCCGAAAAGG : 876 651 : snGluHisSerAspAspAsnAsnLysAsnGluHisGlyAspAspAsnAsnLysAsnGluHisGl : 671 !.:!! !! !:!!! :!!|||!!.....!.:!!..!! !!|||||| !:!!...:!!|| luGlnThrIleAsnGlyHisAsnAsnGlyHisAsnAsnGlyHisAsnAsnGlyHisSerAsnGl 875 : AGCAAACTATTAATGGGCATAATAATGGGCATAATAATGGGCATAATAATGGGCATAGTAATGG : 813 672 : yAspTyrIleAsnAsnAsnHisLeuAsnAspTyrIleAsnAsnAsnHisLeuAsnAspAspVal : 692 | !! !! !...:!!|||:!! !:!!..! !! :!!!:!||| ! !|||:!!!!: ! yHisSerAsnGlyHisAsnAsnGlyHisSerAsnGlyHisSerAsnGlyHisAsnAsnGluGln 812 : GCATAGTAATGGGCATAATAATGGGCATAGTAATGGGCATAGTAATGGGCATAATAATGAACAG : 750 693 : AsnAsnAsnHisLeuAsnAspAspValAsnAsnSerHisLeuAsnAspAspValAsnAsnAsnH : 714 ||||||...!!. !|||! !!: !:!!::!!!! !|||::::!!:!!:!!... !:!!. AsnAsnGlyGlnAsnAsnGlyGluArgAspSerThrCysLeuSerAsnAsnIleGlyPheAspA 749 : AATAACGGACAGAATAATGGGGAAAGAGATTCTACTTGCCTTTCAAACAATATTGGATTTGATA : 684 715 : isLeuAsnAspAspValAsnAsnAsnHisLeuAsnAspAspValAsnAsnAsnHisLeuAsnAs : 735 .. !...:!! !!:!!! !! !:!!.!.:!!.!. !! ! !:!!! ||| !! !!..! rgAsnGlyAsnTyrLeuIleIleAspGluValGluTyrLeuAsnHisIleAsnAspGluThrVa 683 : GGAATGGAAATTACTTAATTATTGACGAGGTGGAATATCTTAACCACATAAATGATGAAACAGT : 621 736 : pAspValAsnAsnSerHisLeuAsnAsnTyrAspAspAspIleTyrPheLeuValValMetLys : 756 !...! !|||:!!! ! ! !:!!.!. ! |||!!:!!:|||||||||||||||:!!:!:||| lSerGluAsnAspLeuPheGluAspGluLysAspGluGluIleTyrPheLeuValIleLeuLys 620 : TTCAGAAAACGATTTATTCGAAGATGAAAAAGACGAAGAAATATATTTCTTAGTTATCTTAAAA : 558 757 : ArgLysIleHisCysPheGluAsnGluLysCysIlePheLeuLysAsnAspGluHisThrAsnC : 778 !:!|||!!::!! ! |||.!....||||||||||||||||||||||||||||||:!!! !|||| LysLysMetTyrGlyPheAsnGlyGluLysCysIlePheLeuLysAsnAspGluAsnIleAsnC 557 : AAAAAAATGTACGGATTTAATGGAGAAAAATGTATATTTTTAAAAAATGATGAAAATATCAACT : 492 779 : ysArgIleCysLeuTyrGlyGluIleIleGluIleIleAspAsnAsnCysThrTyrLysLys<- : 799 ||||||||||||||:!!|||.!.|||:!!!!:|||||| ! :!!!:!...! ! !!...:!! ysArgIleCysLeuHisGlyAsnIleValAspIleIleLysAspSerAlaIleAsnSerGlnIl 491 : GCAGAATATGCTTACATGGAAATATAGTAGACATAATTAAAGATAGTGCAATAAATTCCCAAAT : 429 800 : ><->AspAspSerPheValPheAsnLysGlnProAsnIleTyrLysTyrGluGluTyrLysAsp : 818 :!!..!!!!||||||.!.||||||:!!||| !:!! !!:!!:!!|||!!:||||||:!! eAsnAsnSerThrPheValMetAsnLysLysProCysLeuAsnGluHisGluAspTyrLysAsn 428 : TAATAATTCCACATTTGTTATGAACAAAAAGCCATGTTTAAATGAACATGAGGATTATAAAAAT : 366 819 : LeuLysIleLeuLysGluLysAsnLysLysGlyAsnIleAspLysIleIleAspGluHisThrI : 840 |||||||||:!!|||||||||.!.|||! ||| |||!!:|||:!!||||||.!. !|||: LeuLysIleMetLysGluLysGluLysIleGlyLeuIleGluLysValIleAspAsnThrThrL 365 : TTAAAAATAATGAAAGAAAAGGAAAAAATTGGATTAATTGAAAAAGTAATTGATAATACTACTT : 300 841 : leIleCysLysLysLeuPheGlnSerSerAsnGlnValIleProTyrIleTyrLysLysIleTy : 861 !!:!!||||||!!.:!!||| |||||||||||||||! ! !!|||:!: :!!|||||||| euLeuCysLysAsnValPheThrSerSerAsnGlnValThrAlaTyrLeuThrGlnLysIleTy 299 : TATTATGCAAAAATGTTTTTACCTCTTCAAATCAAGTCACAGCTTATTTGACACAAAAAATTTA : 237 862 : rIleVal : 863 |:!!:!! rLeuIle 236 : TCTCATA : 229 vulgar: gi|23510674|emb|CAD49059.1| 628 863 . Plasmodium_yoelii_yoelii_str._17XNL|MALPY00118|2002-09-10|ds-DNA|Plasmodium_yoelii_TIGR:subseq(8000,4000) 939 228 - 369 M 170 510 G 0 6 M 65 195 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome 1.4.0 ##date 2008-03-06 ##type DNA # # # seqname source feature start end score strand frame attributes # Plasmodium_yoelii_yoelii_str._17XNL|MALPY00118|2002-09-10|ds-DNA|Plasmodium_yoelii_TIGR:subseq(8000,4000) exonerate:protein2genome gene 229 939 369 - . gene_id 3 ; sequence gi|23510674|emb|CAD49059.1| ; gene_orientation . Plasmodium_yoelii_yoelii_str._17XNL|MALPY00118|2002-09-10|ds-DNA|Plasmodium_yoelii_TIGR:subseq(8000,4000) exonerate:protein2genome cds 229 939 . - . Plasmodium_yoelii_yoelii_str._17XNL|MALPY00118|2002-09-10|ds-DNA|Plasmodium_yoelii_TIGR:subseq(8000,4000) exonerate:protein2genome exon 229 939 . - . insertions 6 ; deletions 0 Plasmodium_yoelii_yoelii_str._17XNL|MALPY00118|2002-09-10|ds-DNA|Plasmodium_yoelii_TIGR:subseq(8000,4000) exonerate:protein2genome similarity 229 939 369 - . alignment_id 3 ; Query gi|23510674|emb|CAD49059.1| ; Align 940 629 510 ; Align 424 799 195 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|23510674|emb|CAD49059.1| selenocysteine-specific elongation factor selB homologue, putative [Plasmodium falciparum 3D7] Target: Plasmodium_yoelii_yoelii_str._17XNL|MALPY00118|2002-09-10|ds-DNA|Plasmodium_yoelii_TIGR:subseq(8000,4000) [revcomp] Model: protein2genome Raw score: 279 Query range: 0 -> 60 Target range: 2190 -> 2010 1 : MetIleAsnIleAsnValGlyValLeuGlyHisValAspSerGlyLysThrSerLeuCysLy : 21 |||||||||:!!|||:!!||||||||||||||||||||||||||||||||||||||||||:: MetIleAsnValAsnIleGlyValLeuGlyHisValAspSerGlyLysThrSerLeuCysAr 2190 : ATGATTAATGTTAATATAGGAGTATTAGGACATGTAGATTCTGGGAAAACAAGTTTATGTCG : 2130 22 : sCysLeuSerGlnValLeuSerThrCysAlaLeuAspLysHisLysGluSerLysGluArgG : 42 !|||||||||:!!||||||||||||||||||||||||||||||!:!:!!|||:!!|||!:!| gCysLeuSerGluValLeuSerThrCysAlaLeuAspLysHisArgGlnSerGlnGluLysG 2129 : ATGTTTAAGTGAAGTTTTGAGCACCTGTGCTTTGGATAAGCATAGGCAAAGTCAAGAAAAGG : 2067 43 : lyIleThrIleAspLeuGlyPheSerSerPheTyrIleLysLysLysLysLysLys : 60 ||||||||||||||||||||||||||||||||||||||||||||||||||!..:!! lyIleThrIleAspLeuGlyPheSerSerPheTyrIleLysLysLysLysSerGln 2066 : GAATAACCATTGATCTTGGATTTTCATCATTTTACATAAAAAAAAAAAAAAGCCAA : 2011 vulgar: gi|23510674|emb|CAD49059.1| 0 60 . Plasmodium_yoelii_yoelii_str._17XNL|MALPY00118|2002-09-10|ds-DNA|Plasmodium_yoelii_TIGR:subseq(8000,4000) 2190 2010 - 279 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome 1.4.0 ##date 2008-03-06 ##type DNA # # # seqname source feature start end score strand frame attributes # Plasmodium_yoelii_yoelii_str._17XNL|MALPY00118|2002-09-10|ds-DNA|Plasmodium_yoelii_TIGR:subseq(8000,4000) exonerate:protein2genome gene 2011 2190 279 - . gene_id 4 ; sequence gi|23510674|emb|CAD49059.1| ; gene_orientation . Plasmodium_yoelii_yoelii_str._17XNL|MALPY00118|2002-09-10|ds-DNA|Plasmodium_yoelii_TIGR:subseq(8000,4000) exonerate:protein2genome cds 2011 2190 . - . Plasmodium_yoelii_yoelii_str._17XNL|MALPY00118|2002-09-10|ds-DNA|Plasmodium_yoelii_TIGR:subseq(8000,4000) exonerate:protein2genome exon 2011 2190 . - . insertions 0 ; deletions 0 Plasmodium_yoelii_yoelii_str._17XNL|MALPY00118|2002-09-10|ds-DNA|Plasmodium_yoelii_TIGR:subseq(8000,4000) exonerate:protein2genome similarity 2011 2190 279 - . alignment_id 4 ; Query gi|23510674|emb|CAD49059.1| ; Align 2191 1 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|23510674|emb|CAD49059.1| selenocysteine-specific elongation factor selB homologue, putative [Plasmodium falciparum 3D7] Target: Plasmodium_yoelii_yoelii_str._17XNL|MALPY00118|2002-09-10|ds-DNA|Plasmodium_yoelii_TIGR:subseq(8000,4000) [revcomp] Model: protein2genome Raw score: 163 Query range: 860 -> 934 Target range: 255 -> 33 861 : TyrIleValLysSerThrTyrAspGlnLysAsnGlyAsnThrThrSerGlyAsnThrSerAsnV : 882 |||:!:..!:!!!.!! !||| ! ! ! !:!! !! !!:! !|||..!!!!!!.. TyrLeuThrGlnLysIleTyrLeuIleProLeuGluHisGlnLysAsnLysAsnValCysLysT 255 : TATTTGACACAAAAAATTTATCTCATACCCTTAGAACATCAAAAAAATAAAAATGTGTGCAAAA : 192 883 : alLeuHisThrGlyThrIleIleLysProPheAlaLysGlnGlyLysAlaIleValSerPheAs : 903 .! ! !! !||| !||| !||| !!|||||||||.!.|||||| !|||||| !||||| hrAlaThrIleGlyTyrIleAlaLysSerPheAlaLysAsnGlyLysPheIleValHisPheAs 191 : CAGCAACCATTGGCTATATAGCCAAATCTTTTGCAAAAAATGGAAAATTCATTGTTCATTTTGA : 129 904 : pGluAspIleSerTyrLeuLysAsnAspIleLysSerTyrAsnPheLeuLeuValTyrTyrLys : 924 |!!:|||||||||:!!:!!|||:!!:!!||||||||||||! .!!:!!:!! !||||||||| pAspAspIleSerHisIleLysAspAsnIleLysSerTyrIleIleMetIleLysTyrTyrLys 128 : TGATGATATTTCGCATATTAAGGATAATATAAAATCGTACATAATTATGATTAAGTATTACAAA : 66 925 : AspValPheSerLysLysLysValPheLeu : 934 |||:!!|||!!!|||||||||:!!|||:!! AspIlePheThrLysLysLysIlePheMet 65 : GACATTTTCACAAAAAAAAAAATTTTCATG : 34 vulgar: gi|23510674|emb|CAD49059.1| 860 934 . Plasmodium_yoelii_yoelii_str._17XNL|MALPY00118|2002-09-10|ds-DNA|Plasmodium_yoelii_TIGR:subseq(8000,4000) 255 33 - 163 M 74 222 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome 1.4.0 ##date 2008-03-06 ##type DNA # # # seqname source feature start end score strand frame attributes # Plasmodium_yoelii_yoelii_str._17XNL|MALPY00118|2002-09-10|ds-DNA|Plasmodium_yoelii_TIGR:subseq(8000,4000) exonerate:protein2genome gene 34 255 163 - . gene_id 5 ; sequence gi|23510674|emb|CAD49059.1| ; gene_orientation . Plasmodium_yoelii_yoelii_str._17XNL|MALPY00118|2002-09-10|ds-DNA|Plasmodium_yoelii_TIGR:subseq(8000,4000) exonerate:protein2genome cds 34 255 . - . Plasmodium_yoelii_yoelii_str._17XNL|MALPY00118|2002-09-10|ds-DNA|Plasmodium_yoelii_TIGR:subseq(8000,4000) exonerate:protein2genome exon 34 255 . - . insertions 0 ; deletions 0 Plasmodium_yoelii_yoelii_str._17XNL|MALPY00118|2002-09-10|ds-DNA|Plasmodium_yoelii_TIGR:subseq(8000,4000) exonerate:protein2genome similarity 34 255 163 - . alignment_id 5 ; Query gi|23510674|emb|CAD49059.1| ; Align 256 861 222 # --- END OF GFF DUMP --- # -- completed exonerate analysis