TBLASTN 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|28574707|ref|NP_608837.2| CG15440 CG15440-PA [Drosophila melanogaster] (336 letters) Database: genome.fa 2960 sequences; 20,171,213 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Plasmodium_yoelii_yoelii_str._17XNL|MALPY01249|2002-09-10|ds-DNA... 61 7e-10 Plasmodium_yoelii_yoelii_str._17XNL|MALPY01712|2002-09-10|ds-DNA... 61 9e-10 Plasmodium_yoelii_yoelii_str._17XNL|MALPY00317|2002-09-10|ds-DNA... 39 0.004 Plasmodium_yoelii_yoelii_str._17XNL|MALPY01729|2002-09-10|ds-DNA... 39 0.004 Plasmodium_yoelii_yoelii_str._17XNL|MALPY02681|2002-09-10|ds-DNA... 36 0.032 Plasmodium_yoelii_yoelii_str._17XNL|MALPY01322|2002-09-10|ds-DNA... 32 0.36 Plasmodium_yoelii_yoelii_str._17XNL|MALPY02458|2002-09-10|ds-DNA... 32 0.40 Plasmodium_yoelii_yoelii_str._17XNL|MALPY00023|2002-09-10|ds-DNA... 32 0.56 Plasmodium_yoelii_yoelii_str._17XNL|MALPY00742|2002-09-10|ds-DNA... 30 1.1 Plasmodium_yoelii_yoelii_str._17XNL|MALPY00901|2002-09-10|ds-DNA... 30 1.3 Plasmodium_yoelii_yoelii_str._17XNL|MALPY00716|2002-09-10|ds-DNA... 29 2.4 >Plasmodium_yoelii_yoelii_str._17XNL|MALPY01249|2002-09-10|ds- DNA|Plasmodium_yoelii_TIGR Length = 15435 Score = 60.8 bits (146), Expect = 7e-10, Method: Composition-based stats. Identities = 57/183 (31%), Positives = 88/183 (48%), Gaps = 20/183 (10%) Frame = -3 Query: 8 LWMGSLESY----MTENFII-AAFRKMGEDPTTVRLMRNKYTGEPAGYCFVNFISDDHAL 62 LW+G L+ + EN+I+ F + ED ++L + K + Y F+ F + D A Sbjct: 4843 LWVGDLDKIKDEKVDENYILYCMFYEFSEDIIKIKLCKEK-NSQKNSYAFIEFTNYDIAK 4667 Query: 63 DAMHKLNGKPIPGTNPIVRFRLNSASNSYKLPGN--------------EREFSVWVGDLS 108 +LNGK IPG I +F+LN A Y L N + +S++VG L Sbjct: 4666 YCFEQLNGKWIPGK--INKFKLNWA--KYNLADNVNSSDKNVDIELDDKGTYSIYVGSLP 4499 Query: 109 SDVDDYQLYKVFSSKFTSIKTAKVILDSL-GFSKGYGFVRFGIEDEQKSALYDMNGYIGL 167 ++ +FSS ++SI K+I ++ +K Y F+ F DE AL +M+GYI Sbjct: 4498 KSTTKEEIENLFSSFYSSICFVKIIKNTQKNQNKVYCFIHFFNYDECVRALTEMDGYIFK 4319 Query: 168 GTK 170 G K Sbjct: 4318 GYK 4310 >Plasmodium_yoelii_yoelii_str._17XNL|MALPY01712|2002-09-10|ds- DNA|Plasmodium_yoelii_TIGR Length = 4598 Score = 60.8 bits (146), Expect = 9e-10, Method: Composition-based stats. Identities = 50/173 (28%), Positives = 84/173 (48%) Frame = -1 Query: 8 LWMGSLESYMTENFIIAAFRKMGEDPTTVRLMRNKYTGEPAGYCFVNFISDDHALDAMHK 67 L++G L +TE + F +G ++R+ R+ T + GY +VN+ + A A+ Sbjct: 3620 LYVGDLSEDVTEAVLYEIFNTVGH-VLSIRVCRDSVTRKSLGYAYVNYHNLADAERALDT 3444 Query: 68 LNGKPIPGTNPIVRFRLNSASNSYKLPGNEREFSVWVGDLSSDVDDYQLYKVFSSKFTSI 127 LN I G + + S GN ++V +L +D+ L+ FS F +I Sbjct: 3443 LNYTNIKGQPARLMWSHRDPSLRKSGTGN-----IFVKNLDKTIDNKALFDTFS-MFGNI 3282 Query: 128 KTAKVILDSLGFSKGYGFVRFGIEDEQKSALYDMNGYIGLGTKPIKICNAVPK 180 + KV D G SK YGFV + E+ K A+ +NG + LG+K + + + + K Sbjct: 3281 LSCKVATDEFGKSKNYGFVHYEDEESAKEAIEKVNG-MQLGSKNVYVGHFIKK 3126 Score = 40.8 bits (94), Expect = 0.001, Method: Composition-based stats. Identities = 32/95 (33%), Positives = 52/95 (54%), Gaps = 8/95 (8%) Frame = -1 Query: 84 LNSASNSYKLPGNEREFSVWVGDLSSDVDDYQLYKVFSSKFTSIKTAKVILDSLGFSKGY 143 LN+ S + K PG ++++ +L ++D L ++F + +I +AKV+ D SKG+ Sbjct: 2477 LNTESRN-KHPG----VNLYIKNLDDSMNDQTLKELFEP-YGTITSAKVMKDDKDQSKGF 2316 Query: 144 GFVRFGIEDEQKSALYDM-----NG---YIGLGTK 170 GFV FG +E A+ +M NG Y+GL K Sbjct: 2315 GFVCFGTHEEANKAVTEMHLKIINGKPLYVGLAEK 2211 Score = 31.2 bits (69), Expect = 0.63, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 31/66 (46%) Frame = -1 Query: 8 LWMGSLESYMTENFIIAAFRKMGEDPTTVRLMRNKYTGEPAGYCFVNFISDDHALDAMHK 67 L++ + +TE + F GE + + NK +CF+N+ D A +AM Sbjct: 3089 LYVKNFPDTVTEAHLKQLFSPYGEITSMIVKSDNKNRK----FCFINYSDADSARNAMEN 2922 Query: 68 LNGKPI 73 LNGK I Sbjct: 2921 LNGKKI 2904 >Plasmodium_yoelii_yoelii_str._17XNL|MALPY00317|2002-09-10|ds- DNA|Plasmodium_yoelii_TIGR Length = 33648 Score = 38.5 bits (88), Expect = 0.004, Method: Composition-based stats. Identities = 42/159 (26%), Positives = 72/159 (45%), Gaps = 10/159 (6%) Frame = +2 Query: 43 YTGEPAGYCFVNFISDDHALDA-----MHKLNGKPIPGTNPIVRFRLNSASNSYKLPGNE 97 Y + GY FV + + A M +L GKP+ R N A+ ++ Sbjct: 18881 YNIQKIGYGFVEYEYEYECEYAGKVLNMTRLFGKPL---------RCNKATQ------DK 19015 Query: 98 REFSV----WVGDLSSDVDDYQLYKVFSSKFTSIKTAKVILDSLGFSKGYGFVRFGIEDE 153 + F V ++G+L ++V++ L+ +FSS F + + KV+ + SKG+GF+ + + Sbjct: 19016 KSFDVGANLFIGNLDTEVEEKMLFDIFSS-FGQVISVKVVRNEDDTSKGHGFISYDNFES 19192 Query: 154 QKSALYDMNGYIGLGTKPIKICNAVPKP-KSELGGAVGE 191 A+ +MN + K + I A K K E G E Sbjct: 19193 SDLAIENMNNQF-ICNKKVHISYAFKKGFKGERHGTAAE 19306 >Plasmodium_yoelii_yoelii_str._17XNL|MALPY01729|2002-09-10|ds- DNA|Plasmodium_yoelii_TIGR Length = 4530 Score = 38.5 bits (88), Expect = 0.004, Method: Composition-based stats. Identities = 35/154 (22%), Positives = 74/154 (48%), Gaps = 9/154 (5%) Frame = -3 Query: 19 ENFIIAAFRKMGEDPTTVRLMRNKYTGEPAGYCFVNFISDDHALDAM----HKLNGKPIP 74 E I F ++ ++ ++++ +G+ G +V F + D + A+ + L +PI Sbjct: 3037 ERDIYEFFSEVAGKVRDIQCIKDQRSGKSKGVAYVEFYTQDSVIKALSVNGYMLKNRPIK 2858 Query: 75 -GTNPIVRFRLNSASNSYKLPGNEREFSVWVGDLS---SDVDDYQLYKVFSSKFTSIKTA 130 ++ + R A+ + + N+ +++G L S++ + +L ++F+ F I Sbjct: 2857 VQSSQAEKNRAAKATKHHPIDPNDIPLKLYIGGLLGPLSNITEQELKQLFNP-FGDILDV 2681 Query: 131 KVILDSL-GFSKGYGFVRFGIEDEQKSALYDMNG 163 ++ D G SKG+GF++F E A+ MNG Sbjct: 2680 EIHRDPYTGKSKGFGFIQFHKASEAIEAMTVMNG 2579 Score = 35.4 bits (80), Expect = 0.039, Method: Composition-based stats. Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 3/83 (3%) Frame = -3 Query: 7 QLWMGSLE---SYMTENFIIAAFRKMGEDPTTVRLMRNKYTGEPAGYCFVNFISDDHALD 63 +L++G L S +TE + F G D V + R+ YTG+ G+ F+ F A++ Sbjct: 2776 KLYIGGLLGPLSNITEQELKQLFNPFG-DILDVEIHRDPYTGKSKGFGFIQFHKASEAIE 2600 Query: 64 AMHKLNGKPIPGTNPIVRFRLNS 86 AM +NG + G V + +S Sbjct: 2599 AMTVMNGMEVAGREIKVSYAQDS 2531 >Plasmodium_yoelii_yoelii_str._17XNL|MALPY02681|2002-09-10|ds- DNA|Plasmodium_yoelii_TIGR Length = 2982 Score = 35.8 bits (81), Expect = 0.032, Method: Composition-based stats. Identities = 35/128 (27%), Positives = 60/128 (46%), Gaps = 10/128 (7%) Frame = -2 Query: 41 NKYTGEPAGYCFVNFISDDHALDAMHKLNGKPIPGTNPIVRFRLNSASNSYKLPGNERE- 99 NKY GY F F S + A++A+ KL + G + N + + NE + Sbjct: 1154 NKYIS--LGYGFAEFKSKELAIEAIKKLTATKLDGHVLELSLSHNRIKKNKQAYNNEEKQ 981 Query: 100 ---------FSVWVGDLSSDVDDYQLYKVFSSKFTSIKTAKVILDSLGFSKGYGFVRFGI 150 + V +L+ V +L K+FS+ F +IK ++ ++ S+GYGFV F Sbjct: 980 VIKDKKKITKKLLVKNLAFQVTKEELKKLFSA-FGNIKNVRIPKNAYNRSRGYGFVEFMS 804 Query: 151 EDEQKSAL 158 ++E +A+ Sbjct: 803 KNECLAAI 780 >Plasmodium_yoelii_yoelii_str._17XNL|MALPY01322|2002-09-10|ds- DNA|Plasmodium_yoelii_TIGR Length = 10575 Score = 32.0 bits (71), Expect = 0.36, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 36/65 (55%), Gaps = 1/65 (1%) Frame = -3 Query: 102 VWVGDLSSDVDDYQLYKVFSSKFTSIKTAKVILD-SLGFSKGYGFVRFGIEDEQKSALYD 160 +++ +L D+ D Q+ + +F +K +I D + G +KGYGF + + A++ Sbjct: 4432 LYIQNLPHDLKDDQIMDLLG-QFGKLKGFNIIKDLNTGLNKGYGFFEYEDSSCTQVAIHA 4256 Query: 161 MNGYI 165 +NG++ Sbjct: 4255 LNGFV 4241 >Plasmodium_yoelii_yoelii_str._17XNL|MALPY02458|2002-09-10|ds- DNA|Plasmodium_yoelii_TIGR Length = 3384 Score = 32.0 bits (71), Expect = 0.40, Method: Composition-based stats. Identities = 35/126 (27%), Positives = 53/126 (42%), Gaps = 3/126 (2%) Frame = +2 Query: 31 EDPTTVRLMRNKYTGEPAGYCFVNFI---SDDHALDAMHKLNGKPIPGTNPIVRFRLNSA 87 ED VR + G GY FV F S L H L+ K + VR + Sbjct: 587 EDGIIVR----EKEGRSKGYGFVTFKYIESVQKCLKTTHTLDNKDLQ-----VRLVADPF 739 Query: 88 SNSYKLPGNEREFSVWVGDLSSDVDDYQLYKVFSSKFTSIKTAKVILDSLGFSKGYGFVR 147 ++ Y + ++V +LS + L +F K+ ++ +I D+ G SKGYGF+ Sbjct: 740 TDHY-------QNKLFVRNLSQKTNVTTLRNIFE-KYGKLEECVIIHDNEGKSKGYGFLT 895 Query: 148 FGIEDE 153 F E Sbjct: 896 FSSPKE 913 Score = 31.2 bits (69), Expect = 0.62, Method: Composition-based stats. Identities = 27/77 (35%), Positives = 36/77 (46%), Gaps = 1/77 (1%) Frame = +2 Query: 80 VRFRLNSASNSYKLPGNEREFSVWVGDLSSDVDDYQLYKVFSSKFTSIKTAKVILDSLGF 139 +R R N A S P R + V ++ D Q K F + F I+ ++ + G Sbjct: 461 IRDRCNEAVTSS--PSTRR---LMVRNIPFSTKDEQFLKYFET-FGEIEDGIIVREKEGR 622 Query: 140 SKGYGFVRFG-IEDEQK 155 SKGYGFV F IE QK Sbjct: 623 SKGYGFVTFKYIESVQK 673 >Plasmodium_yoelii_yoelii_str._17XNL|MALPY00023|2002-09-10|ds- DNA|Plasmodium_yoelii_TIGR Length = 10984 Score = 31.6 bits (70), Expect = 0.56, Method: Composition-based stats. Identities = 17/48 (35%), Positives = 29/48 (60%) Frame = -1 Query: 101 SVWVGDLSSDVDDYQLYKVFSSKFTSIKTAKVILDSLGFSKGYGFVRF 148 ++++G LS +V++ +L K F + + IK KVI D +GY F+ F Sbjct: 4123 TLFIGRLSYEVNEKKLKKEFET-YGKIKYVKVIYDQDKKPRGYAFIEF 3983 >Plasmodium_yoelii_yoelii_str._17XNL|MALPY00742|2002-09-10|ds- DNA|Plasmodium_yoelii_TIGR Length = 21369 Score = 30.4 bits (67), Expect = 1.1, Method: Composition-based stats. Identities = 14/41 (34%), Positives = 25/41 (60%) Frame = +3 Query: 124 FTSIKTAKVILDSLGFSKGYGFVRFGIEDEQKSALYDMNGY 164 F + +A++ D+ G +KGYGFV F + +A+ M+G+ Sbjct: 12870 FGYVVSARIQRDANGRNKGYGFVSFNNPESALNAIKGMHGF 12992 >Plasmodium_yoelii_yoelii_str._17XNL|MALPY00901|2002-09-10|ds- DNA|Plasmodium_yoelii_TIGR Length = 3325 Score = 30.4 bits (67), Expect = 1.3, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 35/64 (54%) Frame = +1 Query: 101 SVWVGDLSSDVDDYQLYKVFSSKFTSIKTAKVILDSLGFSKGYGFVRFGIEDEQKSALYD 160 ++++ + S+ D L++ F F +I ++K+ DS G + G+GFV + A+ Sbjct: 1696 NLFIFHIPSEWTDLDLFQHFCC-FGNIISSKIQRDSTGRNSGFGFVSYDNVMSAHHAIQF 1872 Query: 161 MNGY 164 MNGY Sbjct: 1873 MNGY 1884 >Plasmodium_yoelii_yoelii_str._17XNL|MALPY00716|2002-09-10|ds- DNA|Plasmodium_yoelii_TIGR Length = 5193 Score = 29.3 bits (64), Expect = 2.4, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 34/71 (47%) Frame = -2 Query: 5 HCQLWMGSLESYMTENFIIAAFRKMGEDPTTVRLMRNKYTGEPAGYCFVNFISDDHALDA 64 +C LW+G++ ++EN + ++GE VR+ + G+ F + + + A Sbjct: 2000 NCSLWIGNIPFDLSENELHEILSRVGE-VVNVRIKYDIDKNVSKGFAFCEYKDIETCMLA 1824 Query: 65 MHKLNGKPIPG 75 + LNG I G Sbjct: 1823 LKYLNGYEIRG 1791 Database: genome.fa Posted date: Mar 4, 2008 12:20 PM Number of letters in database: 20,171,213 Number of sequences in database: 2960 Lambda K H 0.315 0.134 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2960 Number of Hits to DB: 5,407,826 Number of extensions: 62543 Number of successful extensions: 218 Number of sequences better than 10.0: 12 Number of HSP's gapped: 216 Number of HSP's successfully gapped: 17 Length of query: 336 Length of database: 6,723,737 Length adjustment: 97 Effective length of query: 239 Effective length of database: 6,436,617 Effective search space: 1538351463 Effective search space used: 1538351463 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 44 (21.6 bits)