TBLASTN 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= SPP00000034_1.0 # Protein # Thioredoxin reductase 1 (TR1) # Homo sapiens # Complete (499 letters) Database: genome.fa 2960 sequences; 20,171,213 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Plasmodium_yoelii_yoelii_str._17XNL|MALPY00659|2002-09-10|ds-DNA... 394 e-110 Plasmodium_yoelii_yoelii_str._17XNL|MALPY00317|2002-09-10|ds-DNA... 185 5e-47 Plasmodium_yoelii_yoelii_str._17XNL|MALPY01482|2002-09-10|ds-DNA... 108 4e-24 Plasmodium_yoelii_yoelii_str._17XNL|MALPY00156|2002-09-10|ds-DNA... 62 5e-10 Plasmodium_yoelii_yoelii_str._17XNL|MALPY02922|2002-09-10|ds-DNA... 52 9e-07 Plasmodium_yoelii_yoelii_str._17XNL|MALPY02913|2002-09-10|ds-DNA... 41 0.001 >Plasmodium_yoelii_yoelii_str._17XNL|MALPY00659|2002-09-10|ds- DNA|Plasmodium_yoelii_TIGR Length = 14426 Score = 394 bits (1012), Expect = e-110, Method: Composition-based stats. Identities = 219/503 (43%), Positives = 297/503 (59%), Gaps = 21/503 (4%) Frame = -2 Query: 10 SYDYDLIIIXXXXXXXXXXXXXXXXXXXVMVLDFVTPTPLGTRWGLGGTCVNVGCIPKKL 69 +YDYD I+I V++ DFV P+ GT+WG+GGTCVNVGC+PKKL Sbjct: 13339 NYDYDYIVIGGGPGGMASAKEAASHGAKVLLFDFVKPSSQGTKWGIGGTCVNVGCVPKKL 13160 Query: 70 MHQAALLGQALQ-DSRNYGWKVEETVKHDWDRMIEAVQNHIGSLNWGYRVALREKKVVYE 128 MH A +G + DS YGW+ + +KHDW++++ VQ+HI SLN+ Y V L+ KV Y Sbjct: 13159 MHYAGNMGTLFKSDSDKYGWECD-NLKHDWNKLVSTVQSHIRSLNFSYMVGLKSSKVKYI 12983 Query: 129 NAYGQFIGPHRIK--ATNNKGKEKIYSAERFLIATGERPRYLGIPGD----KEYCISSDD 182 N + + + + KE + + LIATG RP IP D KE I+SDD Sbjct: 12982 NGLAKLKDKNTVSYYLKGDTSKEDCVTGKYILIATGCRPN---IPDDVIGAKELSITSDD 12812 Query: 183 LFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIGEHMEE 242 +FSL PGKTLVVGASYVALECAGFL +G D T+ VRSI+LRGFDQ ANKI +MEE Sbjct: 12811 IFSLKKNPGKTLVVGASYVALECAGFLNSLGCDTTISVRSIILRGFDQQCANKIKLYMEE 12632 Query: 243 HGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGL 302 G+ F+ +P K+ + +V + N+ E+ ++TV+ AIGR + L Sbjct: 12631 QGVTFMCGVLPKKLTKENDKI-----LVHFNNNTTEL----FDTVLYAIGRKGDIDGLNL 12479 Query: 303 ETVGVKINEKTGKIPVTDEEQTNVPYIYAIGDILEDKVELTPVAIQAGRLLAQRLYAGST 362 E + + IN KI TN+P I+A+GDI E+ EL PVAI+AG +LA+RL+ S Sbjct: 12478 EKLNININNNNNKIITDKFSCTNIPNIFAVGDIAENVPELAPVAIKAGEILARRLFKNSN 12299 Query: 363 VKCDYENVPTTVFTPLEYGACGLSEEKAVEKFGEENIEVYHSYFWPLEWTIPSRD----- 417 Y +PT+++TP+EYG+CG SEE+A E+FG+ NIE++ F LE + R Sbjct: 12298 EIMKYNLIPTSIYTPIEYGSCGYSEEQAYEQFGKNNIEIFLQEFNNLEISAVHRTKHLKV 12119 Query: 418 ---------NNKCYAKIICNTKDNERVVGFHVLGPNAGEVTQGFAAALKCGLTKKQLDST 468 ++ C +K++C ++ RV+GFH +GPNAGEVTQG A ALK K D+ Sbjct: 12118 QKDEYDVDISSTCLSKLVCLKNEDNRVIGFHYVGPNAGEVTQGMALALKLNAKKSDFDNC 11939 Query: 469 IGIHPVCAEVFTTLSVTKRSGAS 491 IGIHP AE F LS+T SG S Sbjct: 11938 IGIHPTDAESFMNLSITLSSGLS 11870 >Plasmodium_yoelii_yoelii_str._17XNL|MALPY00317|2002-09-10|ds- DNA|Plasmodium_yoelii_TIGR Length = 33648 Score = 185 bits (469), Expect = 5e-47, Method: Composition-based stats. Identities = 145/459 (31%), Positives = 224/459 (48%), Gaps = 45/459 (9%) Frame = +3 Query: 69 LMHQAALLGQALQDSRNYGWKVEETVKHDWDRMIEAVQNHIGSLNWGYRVALREKKV-VY 127 +M AA + LQ+SR+YG+ T + +++E +I LN YR L+ V VY Sbjct: 24528 IMFNAASIHDILQNSRHYGFDTRFTF--NLPQLVERRDKYIRRLNDIYRNNLKNDNVEVY 24701 Query: 128 ENAYGQFIGPHRI------KATNNKGKEKIYSAERFLIATGERPRYLGIPGDKEYCISSD 181 E I ++ K+ +++ +I + LIA G P + + G E+ ISSD Sbjct: 24702 EGT-ASLINERKVLIKSKNKSEDDEKNHEIIEGKNILIAVGNTPVFPTVKG-VEHTISSD 24875 Query: 182 DLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRSI-LLRGFDQDMANKIGEHM 240 + F + + ++G Y+A+E + +G++ + R LLR FD+ + N++ M Sbjct: 24876 EFFDIKEAK-RIGIIGGGYIAVELINVIKRLGIESYIFARGKRLLRKFDESIVNELENDM 25052 Query: 241 EEHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTRKI 300 +++ I I VE+IE L + E + V+ +GR T+ + Sbjct: 25053 KKNNINIITM---ANVEEIEKVHDKNLTIYLNDGRKFE----HLDYVIYCVGRSPNTKNL 25211 Query: 301 GLETVGVKINEKTGKIPVTDEEQTNVPYIYAIGDI--------LED-------------- 338 LE + I K I V D ++TN+ I+A+GD LED Sbjct: 25212 NLEKL--NITTKNDYIIVDDNQRTNLKNIFAVGDCCMVKKGKELEDLNLLKLYDEQIYIN 25385 Query: 339 -----------KVELTPVAIQAGRLLAQRLYAGSTVKCDYENVPTTVFTPLEYGACGLSE 387 V+LTPVAI AGRLLA R++ T K +Y +PT +F+ G GLSE Sbjct: 25386 NKKNDTEDSFYNVQLTPVAINAGRLLADRIFLNKTRKTNYSLIPTVIFSHPPIGTIGLSE 25565 Query: 388 EKAVEKFGEENIEVYHSYFWPLEWTI----PSRDNNKCYAKIICNTKDNERVVGFHVLGP 443 E+A+ +G+EN+++Y S F L +++ PS+ K Y K++C K+ E + G H++G Sbjct: 25566 EEAINIYGKENVKIYESKFTNLFFSVYDIEPSQ-KEKTYIKLVCVGKE-ELIKGLHIIGL 25739 Query: 444 NAGEVTQGFAAALKCGLTKKQLDSTIGIHPVCAEVFTTL 482 NA E+ QGFA ALK TKK D TI IHP AE TL Sbjct: 25740 NADEIIQGFAVALKMNATKKDFDETIPIHPTAAEELVTL 25856 Score = 31.2 bits (69), Expect = 1.2, Method: Composition-based stats. Identities = 11/12 (91%), Positives = 12/12 (100%) Frame = +2 Query: 55 LGGTCVNVGCIP 66 LGGTCVNVGC+P Sbjct: 24356 LGGTCVNVGCVP 24391 >Plasmodium_yoelii_yoelii_str._17XNL|MALPY01482|2002-09-10|ds- DNA|Plasmodium_yoelii_TIGR Length = 7932 Score = 108 bits (271), Expect = 4e-24, Method: Composition-based stats. Identities = 128/469 (27%), Positives = 209/469 (44%), Gaps = 39/469 (8%) Frame = +2 Query: 55 LGGTCVNVGCIPKK-LMHQAALLGQALQDSRNYGWKVEETVKHDWDRMIEAVQNH----I 109 LGGTC+N GCIP K L+H A ++ + G ++ VK D IE V H + Sbjct: 4346 LGGTCLNRGCIPSKSLLHIAHNYYESKNKFKECGILID-NVKLD----IEQVHKHKNKCM 4510 Query: 110 GSLNWGYRVALREKKVVYENAYGQFIGPHRIKA-TNNKGKEKIYSAERFLIATGERPRYL 168 G+L G ++ V + G I + I T N+G++K Y+AER +IATG +P + Sbjct: 4511 GNLADGISFLYKKNNVKHIIGRGSIIDGNTILVETENEGQKK-YTAERIVIATGSKP--I 4681 Query: 169 GIP--------------------GDKEYCISSDDLFSLPYCPGKTLVVGASYVALECAGF 208 IP D + +SDD+ + P ++G + LE Sbjct: 4682 EIPLKKLDDNNINDVENVKDILEYDHKLIQTSDDILNFKEIPKTMSIIGGGVIGLEIGSV 4861 Query: 209 LAGIGLDVTVMVRSILLRGF-DQDMANKIGEHMEEHGIKFIRQFVPIKVEQIEAGTPGRL 267 + G DVTV + L GF D D++ + + +E+ IKF+ F + T Sbjct: 4862 FSKFGSDVTVYEYNSRLCGFLDPDVSKVLQKVLEKIKIKFM--FNTSIIGGNLNTTNNEA 5035 Query: 268 RVVAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIPVTDEEQTNV- 326 + A+ + +I + + + V++ +GR A I LE + +++N K KI V +E NV Sbjct: 5036 ILYARDNKTNQIKKVKSDIVLVCVGRKANLENINLEKLSIELN-KNKKIQV--DEYFNVK 5206 Query: 327 --PYIYAIGDILEDKVELTPVAIQAGRLLAQRLY------AGSTVKCDYENVPTTVFTPL 378 P I AIGD ++ + L A + G ++A L+ +Y+ +P+ ++T Sbjct: 5207 SQPTIKAIGDAIDGSM-LAHKAEEEGYIVADMLFNELKNNKKKKNHINYDLIPSVIYTHP 5383 Query: 379 EYGACGLSEEKAVE-KFGEENIEVYHSYFWPLEWTIPSR--DNNKCYAKIICNTKDNERV 435 E + G +E+K E K Y S +P SR D+ K+I KD + Sbjct: 5384 EVASVGYNEQKCKELKLN------YKSVSFPFAANSRSRTIDDYDGLIKLIVE-KDTNVI 5542 Query: 436 VGFHVLGPNAGEVTQGFAAALKCGLTKKQLDSTIGIHPVCAEVFTTLSV 484 +G ++G NA E+ + T K L I HP +EV +++ Sbjct: 5543 LGSQIIGNNASELILPLSIYASHKGTSKNLSKIIYPHPTFSEVIKEVAL 5689 >Plasmodium_yoelii_yoelii_str._17XNL|MALPY00156|2002-09-10|ds- DNA|Plasmodium_yoelii_TIGR Length = 21720 Score = 62.4 bits (150), Expect = 5e-10, Method: Composition-based stats. Identities = 102/443 (23%), Positives = 177/443 (39%), Gaps = 86/443 (19%) Frame = -1 Query: 50 GTRWGLGGTCVNVGCIPKKLMHQAALLGQALQDSR---NYGW-------KVEETVKH--- 96 G LGGTCVNVGCIP K + A + L++ NYG K ++ +K Sbjct: 20001 GNEESLGGTCVNVGCIPSKALLYATNKYRELKNISKLCNYGIYSNAYIDKEKDEIKSTQL 19822 Query: 97 -------DWDRMIEAVQNHIGSLNWGYRVALREKK---------VVYENAYGQFIGPHRI 140 + +++ E QN I L G ++ K V+Y++ Y I + I Sbjct: 19821 IADSICINTNKLKEYTQNVIKKLKSGITHGMKNTKFNKNPQSVQVIYDHGY--IINKNTI 19648 Query: 141 KATNNKGKEKIYSAERFLIATGERPRY-LGIPGDKEYCISSDDLFSLPYCPGKTLVVGAS 199 ++ NK ++Y A+ ++ATG P I D + +SD +L ++G Sbjct: 19647 QSKKNK---QLYKAKNIILATGSIPNVPQNINVDHKTVFTSDQAINLQGLQNYISIIGMG 19477 Query: 200 YVALECAGFLAGIGLDVTVMVRSILLRGF-DQDMANKIGEHMEEHGIKF--IRQFVPIKV 256 + LE + +G ++T S F D D+A ++ E +K I F+ ++ Sbjct: 19476 IIGLEFSDIYTALGSEITFFEYSPEFLPFVDTDIA----KYFENVFLKTKPINYFLNTEI 19309 Query: 257 EQIEAGTPGRLRVVA---------QSTNSEEIIEGEY------NTVMLAIGRDACTRKIG 301 + + + G+ V+ ST S I GE+ ++ ++A GR T IG Sbjct: 19308 KYVHPASNGKPVVIGYSLRTKTNPDSTASTTQINGEHVKELHVDSCLVATGRKPNTENIG 19129 Query: 302 LETVGVKINE-----------KTGKIPVTDEEQTNV------------PYIYAIGDILED 338 LE + K+N+ + I TD++ N I+ IGD Sbjct: 19128 LENLNAKMNKGFVLVDDQLRVQIEPIQKTDQKNANTNELNQSIDTQVYDNIFCIGDANGK 18949 Query: 339 KVELTPVAIQAGRLLAQRLYAGSTVKCD---------------YENVPTTVFTPLEYGAC 383 ++ + QA R++ + + Y+N+P+ +T E Sbjct: 18948 QMLAHTASHQALRVIDYIAKKEKKEEKEEIINPIENILNKPIIYKNIPSVCYTNPELAFV 18769 Query: 384 GLSEEKAVEKFGEENIEVYHSYF 406 G SE+ A K ++I+V +Y+ Sbjct: 18768 GFSEKDA-NKLYPDSIDVEITYY 18703 >Plasmodium_yoelii_yoelii_str._17XNL|MALPY02922|2002-09-10|ds- DNA|Plasmodium_yoelii_TIGR Length = 3310 Score = 51.6 bits (122), Expect = 9e-07, Method: Composition-based stats. Identities = 54/202 (26%), Positives = 88/202 (43%), Gaps = 13/202 (6%) Frame = +2 Query: 147 GKEKIYSAERFLIATGERPRYLGIPGDKEY-------CISSDDLFSLPYCPGKTLVVGAS 199 G +Y+ + +IATG RYLG+P ++ Y C + D F Y V+G Sbjct: 2675 GDAGVYTCDALIIATGASARYLGLPSEEAYKGRGVSACATCDGFF---YKGKHVAVIGGG 2845 Query: 200 YVALECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIGEHMEEHGIKFIRQFVPIKVEQI 259 A+E A +L+ I VTV+ R R ++ +++K+ E + V +V Sbjct: 2846 NTAVEEALYLSNIAAKVTVVHRRDKFRS-EKILSDKLLERAANGNVSIEWNSVLEEVLGD 3022 Query: 260 EAGTPG-RLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIPV 318 + G G R+R V T+ + +EG V +AIG T E ++ + G I V Sbjct: 3023 DMGVTGMRIRNVQDGTSKDIALEG----VFIAIGHSPNT-----EIFAGQLGMRNGYIVV 3175 Query: 319 TDEEQ-----TNVPYIYAIGDI 335 + T V ++A GD+ Sbjct: 3176 KGGSEGGATATTVEGVFAAGDV 3241 >Plasmodium_yoelii_yoelii_str._17XNL|MALPY02913|2002-09-10|ds- DNA|Plasmodium_yoelii_TIGR Length = 3288 Score = 41.2 bits (95), Expect = 0.001, Method: Composition-based stats. Identities = 29/81 (35%), Positives = 42/81 (51%), Gaps = 4/81 (4%) Frame = +2 Query: 143 TNNKGKEKIYSAERFLIATGERPRYLGIPGDK-EYCISSDDLF---SLPYCPGKTLVVGA 198 T+++G IY E+ L+ATG RPR GD Y + DD F +L K ++G Sbjct: 2129 TDDEGT--IYRFEKLLLATGGRPRRFPFGGDDILYFRTVDDYFRLRTLTETRRKFAIIGG 2302 Query: 199 SYVALECAGFLAGIGLDVTVM 219 ++ E A LA IG DV ++ Sbjct: 2303 GFIGSEIAAALASIGKDVVMI 2365 TBLASTN 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= SPP00000035_1.0 # Protein # Thioredoxin reductase 2 (TR2) # Homo sapiens # Complete (524 letters) Database: genome.fa 2960 sequences; 20,171,213 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Plasmodium_yoelii_yoelii_str._17XNL|MALPY00659|2002-09-10|ds-DNA... 425 e-119 Plasmodium_yoelii_yoelii_str._17XNL|MALPY00317|2002-09-10|ds-DNA... 184 9e-47 Plasmodium_yoelii_yoelii_str._17XNL|MALPY01482|2002-09-10|ds-DNA... 93 3e-19 Plasmodium_yoelii_yoelii_str._17XNL|MALPY00156|2002-09-10|ds-DNA... 49 4e-06 Plasmodium_yoelii_yoelii_str._17XNL|MALPY02913|2002-09-10|ds-DNA... 40 0.004 >Plasmodium_yoelii_yoelii_str._17XNL|MALPY00659|2002-09-10|ds- DNA|Plasmodium_yoelii_TIGR Length = 14426 Score = 425 bits (1093), Expect = e-119, Method: Composition-based stats. Identities = 224/494 (45%), Positives = 310/494 (62%), Gaps = 17/494 (3%) Frame = -2 Query: 39 DYDXXXXXXXXXXXACAKEAAQLGRKVAVVDYVEPSPQGTRWGLGGTCVNVGCIPKKLMH 98 DYD A AKEAA G KV + D+V+PS QGT+WG+GGTCVNVGC+PKKLMH Sbjct: 13333 DYDYIVIGGGPGGMASAKEAASHGAKVLLFDFVKPSSQGTKWGIGGTCVNVGCVPKKLMH 13154 Query: 99 QAALLGGLIQ-DAPNYGWEVAQPVPHDWRKMAEAVQNHVKSLNWGHRVQLQDRKVKYFNI 157 A +G L + D+ YGWE + HDW K+ VQ+H++SLN+ + V L+ KVKY N Sbjct: 13153 YAGNMGTLFKSDSDKYGWECDN-LKHDWNKLVSTVQSHIRSLNFSYMVGLKSSKVKYING 12977 Query: 158 KASFVDEHTVCGVAKG--GKEILLSADHIIIATGGRPRYPTHIEGALEYGITSDDIFWLK 215 A D++TV KG KE ++ +I+IATG RP P + GA E ITSDDIF LK Sbjct: 12976 LAKLKDKNTVSYYLKGDTSKEDCVTGKYILIATGCRPNIPDDVIGAKELSITSDDIFSLK 12797 Query: 216 ESPGKTLVVGASYVALECAGFLTGIGLDTTIMMRSIPLRGFDQQMSSMVIEHMASHGTRF 275 ++PGKTLVVGASYVALECAGFL +G DTTI +RSI LRGFDQQ ++ + +M G F Sbjct: 12796 KNPGKTLVVGASYVALECAGFLNSLGCDTTISVRSIILRGFDQQCANKIKLYMEEQGVTF 12617 Query: 276 LRGCAPSRVRRLPDGQLQVTWEDSTTGKEDTGTFDTVLWAIGRVPDTRSLNLEKAGVDTS 335 + G P ++ + D ++ V + ++TT FDTVL+AIGR D LNLEK ++ + Sbjct: 12616 MCGVLPKKLTKEND-KILVHFNNNTTE-----LFDTVLYAIGRKGDIDGLNLEKLNININ 12455 Query: 336 PDTQKILVDSREATSVPHIYAIGDVVEGRPELTPIAIMAGRLLVQRLFGGSSDLMDYDNV 395 + KI+ D T++P+I+A+GD+ E PEL P+AI AG +L +RLF S+++M Y+ + Sbjct: 12454 NNNNKIITDKFSCTNIPNIFAVGDIAENVPELAPVAIKAGEILARRLFKNSNEIMKYNLI 12275 Query: 396 PTTVFTPLEYGCVGLSEEEAVARHGQEHVEVYHAHYKPLEFTVAGRD------------- 442 PT+++TP+EYG G SEE+A + G+ ++E++ + LE + R Sbjct: 12274 PTSIYTPIEYGSCGYSEEQAYEQFGKNNIEIFLQEFNNLEISAVHRTKHLKVQKDEYDVD 12095 Query: 443 -ASQCYVKMVCLREPPQLVLGLHFLGPNAGEVTQGFALGIKCGASYAQVMRTVGIHPTCS 501 +S C K+VCL+ V+G H++GPNAGEVTQG AL +K A + +GIHPT + Sbjct: 12094 ISSTCLSKLVCLKNEDNRVIGFHYVGPNAGEVTQGMALALKLNAKKSDFDNCIGIHPTDA 11915 Query: 502 EEVVKLRISKRSGL 515 E + L I+ SGL Sbjct: 11914 ESFMNLSITLSSGL 11873 >Plasmodium_yoelii_yoelii_str._17XNL|MALPY00317|2002-09-10|ds- DNA|Plasmodium_yoelii_TIGR Length = 33648 Score = 184 bits (467), Expect = 9e-47, Method: Composition-based stats. Identities = 131/455 (28%), Positives = 237/455 (52%), Gaps = 43/455 (9%) Frame = +3 Query: 96 LMHQAALLGGLIQDAPNYGWEVAQPVPHDWRKMAEAVQNHVKSLNWGHRVQLQDRKVKYF 155 +M AA + ++Q++ +YG++ + ++ E +++ LN +R L++ V+ + Sbjct: 24528 IMFNAASIHDILQNSRHYGFDTR--FTFNLPQLVERRDKYIRRLNDIYRNNLKNDNVEVY 24701 Query: 156 NIKASFVDEHTVCGVAKGGKEI------LLSADHIIIATGGRPRYPTHIEGALEYGITSD 209 AS ++E V +K E ++ +I+IA G P +PT ++G +E+ I+SD Sbjct: 24702 EGTASLINERKVLIKSKNKSEDDEKNHEIIEGKNILIAVGNTPVFPT-VKG-VEHTISSD 24875 Query: 210 DIFWLKESPGKTLVVGASYVALECAGFLTGIGLDTTIMMRSIPL-RGFDQQMSSMVIEHM 268 + F +KE+ + ++G Y+A+E + +G+++ I R L R FD+ + + + M Sbjct: 24876 EFFDIKEAK-RIGIIGGGYIAVELINVIKRLGIESYIFARGKRLLRKFDESIVNELENDM 25052 Query: 269 ASHGTRFLRGCAPSRVRRLPDGQLQVTWEDSTTGKEDTGTFDTVLWAIGRVPDTRSLNLE 328 + + + ++ D L + D + D V++ +GR P+T++LNLE Sbjct: 25053 KKNNINIITMANVEEIEKVHDKNLTIYLNDGRKFEH----LDYVIYCVGRSPNTKNLNLE 25220 Query: 329 KAGVDTSPDTQKILVDSREATSVPHIYAIGD---VVEGRP-------------------- 365 K + T D I+VD + T++ +I+A+GD V +G+ Sbjct: 25221 KLNITTKNDY--IIVDDNQRTNLKNIFAVGDCCMVKKGKELEDLNLLKLYDEQIYINNKK 25394 Query: 366 ----------ELTPIAIMAGRLLVQRLFGGSSDLMDYDNVPTTVFTPLEYGCVGLSEEEA 415 +LTP+AI AGRLL R+F + +Y +PT +F+ G +GLSEEEA Sbjct: 25395 NDTEDSFYNVQLTPVAINAGRLLADRIFLNKTRKTNYSLIPTVIFSHPPIGTIGLSEEEA 25574 Query: 416 VARHGQEHVEVYHAHYKPLEFTVAGRDASQ---CYVKMVCLREPPQLVLGLHFLGPNAGE 472 + +G+E+V++Y + + L F+V + SQ Y+K+VC+ + +L+ GLH +G NA E Sbjct: 25575 INIYGKENVKIYESKFTNLFFSVYDIEPSQKEKTYIKLVCVGK-EELIKGLHIIGLNADE 25751 Query: 473 VTQGFALGIKCGASYAQVMRTVGIHPTCSEEVVKL 507 + QGFA+ +K A+ T+ IHPT +EE+V L Sbjct: 25752 IIQGFAVALKMNATKKDFDETIPIHPTAAEELVTL 25856 Score = 32.0 bits (71), Expect = 0.67, Method: Composition-based stats. Identities = 11/12 (91%), Positives = 12/12 (100%) Frame = +2 Query: 82 LGGTCVNVGCIP 93 LGGTCVNVGC+P Sbjct: 24356 LGGTCVNVGCVP 24391 >Plasmodium_yoelii_yoelii_str._17XNL|MALPY01482|2002-09-10|ds- DNA|Plasmodium_yoelii_TIGR Length = 7932 Score = 92.8 bits (229), Expect = 3e-19, Method: Composition-based stats. Identities = 114/471 (24%), Positives = 197/471 (41%), Gaps = 48/471 (10%) Frame = +2 Query: 82 LGGTCVNVGCIPKK-LMHQAALL---------GGLIQDAPNYGWEVAQPVPHDWRKMAEA 131 LGGTC+N GCIP K L+H A G++ D N ++ Q H + M Sbjct: 4346 LGGTCLNRGCIPSKSLLHIAHNYYESKNKFKECGILID--NVKLDIEQVHKHKNKCMG-- 4513 Query: 132 VQNHVKSLNWGHRVQLQDRKVKYFNIKASFVDEHTVCGVAKGGKEILLSADHIIIATGGR 191 +L G + VK+ + S +D +T+ + + +A+ I+IATG + Sbjct: 4514 ------NLADGISFLYKKNNVKHIIGRGSIIDGNTILVETENEGQKKYTAERIVIATGSK 4675 Query: 192 P-RYP------------THIEGALEYG----ITSDDIFWLKESPGKTLVVGASYVALECA 234 P P +++ LEY TSDDI KE P ++G + LE Sbjct: 4676 PIEIPLKKLDDNNINDVENVKDILEYDHKLIQTSDDILNFKEIPKTMSIIGGGVIGLEIG 4855 Query: 235 GFLTGIGLDTTIMMRSIPLRGF-DQQMSSMVIEHMASHGTRFLRGCAPSRVRRLPDGQLQ 293 + G D T+ + L GF D +S ++ + + +F+ + + G L Sbjct: 4856 SVFSKFGSDVTVYEYNSRLCGFLDPDVSKVLQKVLEKIKIKFMFNTS------IIGGNLN 5017 Query: 294 VTWEDSTTGKEDTGT-------FDTVLWAIGRVPDTRSLNLEKAGVDTSPDTQKILVDSR 346 T ++ D T D VL +GR + ++NLEK ++ + + +KI VD Sbjct: 5018 TTNNEAILYARDNKTNQIKKVKSDIVLVCVGRKANLENINLEKLSIELNKN-KKIQVDEY 5194 Query: 347 -EATSVPHIYAIGDVVEGRPELTPIAIMAGRLLVQRLFG------GSSDLMDYDNVPTTV 399 S P I AIGD ++G L A G ++ LF + ++YD +P+ + Sbjct: 5195 FNVKSQPTIKAIGDAIDGS-MLAHKAEEEGYIVADMLFNELKNNKKKKNHINYDLIPSVI 5371 Query: 400 FTPLEYGCVGLSEEEAVARHGQEHVEVYHAHYKPLEFTVAGRDASQC------YVKMVCL 453 +T E VG +E++ + +YK + F A S+ +K++ Sbjct: 5372 YTHPEVASVGYNEQKC---------KELKLNYKSVSFPFAANSRSRTIDDYDGLIKLIVE 5524 Query: 454 REPPQLVLGLHFLGPNAGEVTQGFALGIKCGASYAQVMRTVGIHPTCSEEV 504 ++ ++LG +G NA E+ ++ + + + + HPT SE + Sbjct: 5525 KD-TNVILGSQIIGNNASELILPLSIYASHKGTSKNLSKIIYPHPTFSEVI 5674 >Plasmodium_yoelii_yoelii_str._17XNL|MALPY00156|2002-09-10|ds- DNA|Plasmodium_yoelii_TIGR Length = 21720 Score = 49.3 bits (116), Expect = 4e-06, Method: Composition-based stats. Identities = 76/301 (25%), Positives = 119/301 (39%), Gaps = 49/301 (16%) Frame = -1 Query: 77 GTRWGLGGTCVNVGCIPKK-LMHQAALLGGL--IQDAPNYGWE----------------- 116 G LGGTCVNVGCIP K L++ L I NYG Sbjct: 20001 GNEESLGGTCVNVGCIPSKALLYATNKYRELKNISKLCNYGIYSNAYIDKEKDEIKSTQL 19822 Query: 117 VAQPVPHDWRKMAEAVQNHVKSLNWGHRVQLQDRK-------VKYFNIKASFVDEHTVCG 169 +A + + K+ E QN +K L G +++ K V+ ++++T+ Sbjct: 19821 IADSICINTNKLKEYTQNVIKKLKSGITHGMKNTKFNKNPQSVQVIYDHGYIINKNTI-- 19648 Query: 170 VAKGGKEILLSADHIIIATGGRPRYPTHIEGALEYGITSDDIFWLKESPGKTLVVGASYV 229 +K K+ L A +II+ATG P P +I + TSD L+ ++G + Sbjct: 19647 QSKKNKQ-LYKAKNIILATGSIPNVPQNINVDHKTVFTSDQAINLQGLQNYISIIGMGII 19471 Query: 230 ALECAGFLTGIGLDTT----------------------IMMRSIPLRGFDQQMSSMVIEH 267 LE + T +G + T + +++ P+ F V H Sbjct: 19470 GLEFSDIYTALGSEITFFEYSPEFLPFVDTDIAKYFENVFLKTKPINYFLNTEIKYV--H 19297 Query: 268 MASHGTRFLRGCAPSRVRRLPDGQLQVTWEDSTTGKEDTGTFDTVLWAIGRVPDTRSLNL 327 AS+G + G + R + PD T + KE D+ L A GR P+T ++ L Sbjct: 19296 PASNGKPVVIGYS-LRTKTNPDSTASTTQINGEHVKEL--HVDSCLVATGRKPNTENIGL 19126 Query: 328 E 328 E Sbjct: 19125 E 19123 >Plasmodium_yoelii_yoelii_str._17XNL|MALPY02913|2002-09-10|ds- DNA|Plasmodium_yoelii_TIGR Length = 3288 Score = 39.7 bits (91), Expect = 0.004, Method: Composition-based stats. Identities = 42/147 (28%), Positives = 62/147 (42%), Gaps = 5/147 (3%) Frame = +2 Query: 182 DHIIIATGGRPRYPTHIEGALEYGITSDDIFWLK---ESPGKTLVVGASYVALECAGFLT 238 + +++ATGGRPR + Y T DD F L+ E+ K ++G ++ E A L Sbjct: 2159 EKLLLATGGRPRRFPFGGDDILYFRTVDDYFRLRTLTETRRKFAIIGGGFIGSEIAAALA 2338 Query: 239 GIGLDTTIMMRS--IPLRGFDQQMSSMVIEHMASHGTRFLRGCAPSRVRRLPDGQLQVTW 296 IG D ++ I R F + + + G L G + + R DG Sbjct: 2339 SIGKDVVMIFPEACIGARVFPGNLCRFLDGYYRDQGVELLSGRTVTGLVREGDGLRLALG 2518 Query: 297 EDSTTGKEDTGTFDTVLWAIGRVPDTR 323 E TG E+ D V+ IG P TR Sbjct: 2519 E---TG-EEVLVVDGVVAGIGIEPXTR 2587 TBLASTN 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= SPP00000036_1.0 # Protein # Thioredoxin reductase 3 (TR3) # Homo sapiens # Complete (754 letters) Database: genome.fa 2960 sequences; 20,171,213 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Plasmodium_yoelii_yoelii_str._17XNL|MALPY00659|2002-09-10|ds-DNA... 404 e-113 Plasmodium_yoelii_yoelii_str._17XNL|MALPY00317|2002-09-10|ds-DNA... 159 6e-39 Plasmodium_yoelii_yoelii_str._17XNL|MALPY01482|2002-09-10|ds-DNA... 104 2e-22 Plasmodium_yoelii_yoelii_str._17XNL|MALPY00156|2002-09-10|ds-DNA... 55 1e-07 Plasmodium_yoelii_yoelii_str._17XNL|MALPY02913|2002-09-10|ds-DNA... 41 0.002 Plasmodium_yoelii_yoelii_str._17XNL|MALPY02922|2002-09-10|ds-DNA... 39 0.009 Plasmodium_yoelii_yoelii_str._17XNL|MALPY01678|2002-09-10|ds-DNA... 32 1.0 Plasmodium_yoelii_yoelii_str._17XNL|MALPY00707|2002-09-10|ds-DNA... 30 4.7 Plasmodium_yoelii_yoelii_str._17XNL|MALPY01316|2002-09-10|ds-DNA... 30 5.2 Plasmodium_yoelii_yoelii_str._17XNL|MALPY02887|2002-09-10|ds-DNA... 30 6.3 >Plasmodium_yoelii_yoelii_str._17XNL|MALPY00659|2002-09-10|ds- DNA|Plasmodium_yoelii_TIGR Length = 14426 Score = 404 bits (1038), Expect = e-113, Method: Composition-based stats. Identities = 227/498 (45%), Positives = 300/498 (60%), Gaps = 18/498 (3%) Frame = -2 Query: 266 YDYDXXXXXXXXXXXXCAKEAAILGKKVMVLDFVVPSPQGTSWGLGGTCVNVGCIPKKLM 325 YDYD AKEAA G KV++ DFV PS QGT WG+GGTCVNVGC+PKKLM Sbjct: 13336 YDYDYIVIGGGPGGMASAKEAASHGAKVLLFDFVKPSSQGTKWGIGGTCVNVGCVPKKLM 13157 Query: 326 HQAALLGQAL-CDSRKFGWEYNQQVRHNWETMTKAIQNHISSLNWGYRLSLREKAVAYVN 384 H A +G DS K+GWE + ++H+W + +Q+HI SLN+ Y + L+ V Y+N Sbjct: 13156 HYAGNMGTLFKSDSDKYGWECDN-LKHDWNKLVSTVQSHIRSLNFSYMVGLKSSKVKYIN 12980 Query: 385 SYGEFVEHHKIKATNK--KGQETYYTAAQFVIATGERPRYLG-IQGDKEYCITSDDLFSL 441 + + + + K +E T +IATG RP + G KE ITSDD+FSL Sbjct: 12979 GLAKLKDKNTVSYYLKGDTSKEDCVTGKYILIATGCRPNIPDDVIGAKELSITSDDIFSL 12800 Query: 442 PYCPGKTLVVGASYVALECAGFLAGFGLDVTVMVRSILLRGFDQEMAEKVGSYMEQHGVK 501 PGKTLVVGASYVALECAGFL G D T+ VRSI+LRGFDQ+ A K+ YME+ GV Sbjct: 12799 KKNPGKTLVVGASYVALECAGFLNSLGCDTTISVRSIILRGFDQQCANKIKLYMEEQGVT 12620 Query: 502 FLRKFIPVMVQQLEKGSPGKLKVLAKSTEGTETIEGVYNTVLLAIGRDSCTRKIGLEKIG 561 F+ +P ++L K + K+L T + ++TVL AIGR + LEK+ Sbjct: 12619 FMCGVLP---KKLTKEND---KILVHFNNNTTEL---FDTVLYAIGRKGDIDGLNLEKLN 12467 Query: 562 VKINEKSGKIPVNDVEQTNVPYVYAVGDILEDKPELTPVAIQSGKLLAQRLFGASLEKCD 621 + IN + KI + TN+P ++AVGDI E+ PEL PVAI++G++LA+RLF S E Sbjct: 12466 ININNNNNKIITDKFSCTNIPNIFAVGDIAENVPELAPVAIKAGEILARRLFKNSNEIMK 12287 Query: 622 YINVPTTVFTPLEYGCCGLSEEKAIEVYKKENLEIYHTLFWPLEWTVAGRE--------- 672 Y +PT+++TP+EYG CG SEE+A E + K N+EI+ F LE + R Sbjct: 12286 YNLIPTSIYTPIEYGSCGYSEEQAYEQFGKNNIEIFLQEFNNLEISAVHRTKHLKVQKDE 12107 Query: 673 -----NNTCYAKIICNKFDHDRVIGFHILGPNAGEVTQGFAAAMKCGLTKQLLDDTIGIH 727 ++TC +K++C K + +RVIGFH +GPNAGEVTQG A A+K K D+ IGIH Sbjct: 12106 YDVDISSTCLSKLVCLKNEDNRVIGFHYVGPNAGEVTQGMALALKLNAKKSDFDNCIGIH 11927 Query: 728 PTCGEVFTTLEITKSSGL 745 PT E F L IT SSGL Sbjct: 11926 PTDAESFMNLSITLSSGL 11873 >Plasmodium_yoelii_yoelii_str._17XNL|MALPY00317|2002-09-10|ds- DNA|Plasmodium_yoelii_TIGR Length = 33648 Score = 159 bits (401), Expect = 6e-39, Method: Composition-based stats. Identities = 131/457 (28%), Positives = 215/457 (47%), Gaps = 43/457 (9%) Frame = +3 Query: 324 LMHQAALLGQALCDSRKFGWEYNQQVRHNWETMTKAIQNHISSLNWGYRLSLREKAVAYV 383 +M AA + L +SR +G ++ + N + + +I LN YR +L+ V Sbjct: 24528 IMFNAASIHDILQNSRHYG--FDTRFTFNLPQLVERRDKYIRRLNDIYRNNLKNDNVEVY 24701 Query: 384 NSYGEFVEHHK--IKATNK----KGQETYYTAAQFVIATGERPRYLGIQGDKEYCITSDD 437 + K IK+ NK + +IA G P + ++G E+ I+SD+ Sbjct: 24702 EGTASLINERKVLIKSKNKSEDDEKNHEIIEGKNILIAVGNTPVFPTVKG-VEHTISSDE 24878 Query: 438 LFSLPYCPGKTLVVGASYVALECAGFLAGFGLDVTVMVRSI-LLRGFDQEMAEKVGSYME 496 F + + ++G Y+A+E + G++ + R LLR FD+ + ++ + M+ Sbjct: 24879 FFDIKEAK-RIGIIGGGYIAVELINVIKRLGIESYIFARGKRLLRKFDESIVNELENDMK 25055 Query: 497 QHGVKFLRKFIPVMVQQLEKGSPGKLKVLAKSTEGTETIEGVYNTVLLAIGRDSCTRKIG 556 ++ + + V+++EK L + E ++ V+ +GR T+ + Sbjct: 25056 KNNINIITM---ANVEEIEKVHDKNLTIYLNDGRKFEHLD----YVIYCVGRSPNTKNLN 25214 Query: 557 LEKIGVKINEKSGKIPVNDVEQTNVPYVYAVGDI--------LED--------------- 593 LEK+ I K+ I V+D ++TN+ ++AVGD LED Sbjct: 25215 LEKL--NITTKNDYIIVDDNQRTNLKNIFAVGDCCMVKKGKELEDLNLLKLYDEQIYINN 25388 Query: 594 ----------KPELTPVAIQSGKLLAQRLFGASLEKCDYINVPTTVFTPLEYGCCGLSEE 643 +LTPVAI +G+LLA R+F K +Y +PT +F+ G GLSEE Sbjct: 25389 KKNDTEDSFYNVQLTPVAINAGRLLADRIFLNKTRKTNYSLIPTVIFSHPPIGTIGLSEE 25568 Query: 644 KAIEVYKKENLEIYHTLFWPLEWTVAGRE---NNTCYAKIICNKFDHDRVIGFHILGPNA 700 +AI +Y KEN++IY + F L ++V E Y K++C + + G HI+G NA Sbjct: 25569 EAINIYGKENVKIYESKFTNLFFSVYDIEPSQKEKTYIKLVCVG-KEELIKGLHIIGLNA 25745 Query: 701 GEVTQGFAAAMKCGLTKQLLDDTIGIHPTCGEVFTTL 737 E+ QGFA A+K TK+ D+TI IHPT E TL Sbjct: 25746 DEIIQGFAVALKMNATKKDFDETIPIHPTAAEELVTL 25856 Score = 31.6 bits (70), Expect = 1.6, Method: Composition-based stats. Identities = 11/12 (91%), Positives = 12/12 (100%) Frame = +2 Query: 310 LGGTCVNVGCIP 321 LGGTCVNVGC+P Sbjct: 24356 LGGTCVNVGCVP 24391 >Plasmodium_yoelii_yoelii_str._17XNL|MALPY01482|2002-09-10|ds- DNA|Plasmodium_yoelii_TIGR Length = 7932 Score = 104 bits (259), Expect = 2e-22, Method: Composition-based stats. Identities = 114/455 (25%), Positives = 203/455 (44%), Gaps = 31/455 (6%) Frame = +2 Query: 310 LGGTCVNVGCIPKK-LMHQAALLGQALCDSRKFGWEYNQQVRHNWETMTKAIQNHISSLN 368 LGGTC+N GCIP K L+H A ++ ++ G + V+ + E + K + +L Sbjct: 4346 LGGTCLNRGCIPSKSLLHIAHNYYESKNKFKECGILIDN-VKLDIEQVHKHKNKCMGNLA 4522 Query: 369 WGYRLSLREKAVAYVNSYGEFVEHHKIKATNKKGQETYYTAAQFVIATGERPRYLGIQG- 427 G ++ V ++ G ++ + I + + YTA + VIATG +P + ++ Sbjct: 4523 DGISFLYKKNNVKHIIGRGSIIDGNTILVETENEGQKKYTAERIVIATGSKPIEIPLKKL 4702 Query: 428 -----------------DKEYCITSDDLFSLPYCPGKTLVVGASYVALECAGFLAGFGLD 470 D + TSDD+ + P ++G + LE + FG D Sbjct: 4703 DDNNINDVENVKDILEYDHKLIQTSDDILNFKEIPKTMSIIGGGVIGLEIGSVFSKFGSD 4882 Query: 471 VTVMVRSILLRGF-DQEMAEKVGSYMEQHGVKFLRKFIPVMVQQLEKGSPGKLKVLAKST 529 VTV + L GF D ++++ + +E+ +KF+ F ++ + + + A+ Sbjct: 4883 VTVYEYNSRLCGFLDPDVSKVLQKVLEKIKIKFM--FNTSIIGGNLNTTNNEAILYARDN 5056 Query: 530 EGTETIEGVYNTVLLAIGRDSCTRKIGLEKIGVKINEKSGKIPVNDVEQTNV---PYVYA 586 + + + + VL+ +GR + I LEK+ +++N K+ KI V+ E NV P + A Sbjct: 5057 KTNQIKKVKSDIVLVCVGRKANLENINLEKLSIELN-KNKKIQVD--EYFNVKSQPTIKA 5227 Query: 587 VGDILEDKPELTPVAIQSGKLLAQRLFG------ASLEKCDYINVPTTVFTPLEYGCCGL 640 +GD + D L A + G ++A LF +Y +P+ ++T E G Sbjct: 5228 IGDAI-DGSMLAHKAEEEGYIVADMLFNELKNNKKKKNHINYDLIPSVIYTHPEVASVGY 5404 Query: 641 SEEKAIEVYKKENLEIYHTLFWPLEWTVAGR--ENNTCYAKIICNKFDHDRVIGFHILGP 698 +E+K E+ K N Y ++ +P R ++ K+I K D + ++G I+G Sbjct: 5405 NEQKCKEL--KLN---YKSVSFPFAANSRSRTIDDYDGLIKLIVEK-DTNVILGSQIIGN 5566 Query: 699 NAGEVTQGFAAAMKCGLTKQLLDDTIGIHPTCGEV 733 NA E+ + T + L I HPT EV Sbjct: 5567 NASELILPLSIYASHKGTSKNLSKIIYPHPTFSEV 5671 >Plasmodium_yoelii_yoelii_str._17XNL|MALPY00156|2002-09-10|ds- DNA|Plasmodium_yoelii_TIGR Length = 21720 Score = 54.7 bits (130), Expect = 1e-07, Method: Composition-based stats. Identities = 77/317 (24%), Positives = 123/317 (38%), Gaps = 46/317 (14%) Frame = -1 Query: 305 GTSWGLGGTCVNVGCIPKKLMHQA----------------ALLGQALCDSRKFGWEYNQQ 348 G LGGTCVNVGCIP K + A + A D K + Q Sbjct: 20001 GNEESLGGTCVNVGCIPSKALLYATNKYRELKNISKLCNYGIYSNAYIDKEKDEIKSTQL 19822 Query: 349 VRH----NWETMTKAIQNHISSLNWGYRLSLRE-------KAVAYVNSYGEFVEHHKIKA 397 + N + + QN I L G ++ ++V + +G + + I++ Sbjct: 19821 IADSICINTNKLKEYTQNVIKKLKSGITHGMKNTKFNKNPQSVQVIYDHGYIINKNTIQS 19642 Query: 398 TNKKGQETYYTAAQFVIATGERPRY-LGIQGDKEYCITSDDLFSLPYCPGKTLVVGASYV 456 K + Y A ++ATG P I D + TSD +L ++G + Sbjct: 19641 ---KKNKQLYKAKNIILATGSIPNVPQNINVDHKTVFTSDQAINLQGLQNYISIIGMGII 19471 Query: 457 ALECAGFLAGFGLDVTVMVRSILLRGF-DQEMAEKVGSYMEQHGVKF--LRKFIPVMVQQ 513 LE + G ++T S F D ++A+ Y E +K + F+ ++ Sbjct: 19470 GLEFSDIYTALGSEITFFEYSPEFLPFVDTDIAK----YFENVFLKTKPINYFLNTEIKY 19303 Query: 514 LEKGSPGKLKVLA---------KSTEGTETIEGVY------NTVLLAIGRDSCTRKIGLE 558 + S GK V+ ST T I G + ++ L+A GR T IGLE Sbjct: 19302 VHPASNGKPVVIGYSLRTKTNPDSTASTTQINGEHVKELHVDSCLVATGRKPNTENIGLE 19123 Query: 559 KIGVKINEKSGKIPVND 575 + K+N+ G + V+D Sbjct: 19122 NLNAKMNK--GFVLVDD 19078 >Plasmodium_yoelii_yoelii_str._17XNL|MALPY02913|2002-09-10|ds- DNA|Plasmodium_yoelii_TIGR Length = 3288 Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats. Identities = 57/217 (26%), Positives = 86/217 (39%), Gaps = 6/217 (2%) Frame = +2 Query: 405 TYYTAAQFVIATGERPRYLGIQGDK-EYCITSDDLF---SLPYCPGKTLVVGASYVALEC 460 T Y + ++ATG RPR GD Y T DD F +L K ++G ++ E Sbjct: 2144 TIYRFEKLLLATGGRPRRFPFGGDDILYFRTVDDYFRLRTLTETRRKFAIIGGGFIGSEI 2323 Query: 461 AGFLAGFGLDVTVMVRSILL--RGFDQEMAEKVGSYMEQHGVKFLRKFIPVMVQQLEKGS 518 A LA G DV ++ + R F + + Y GV+ L V L + Sbjct: 2324 AAALASIGKDVVMIFPEACIGARVFPGNLCRFLDGYYRDQGVELLSG---RTVTGLVREG 2494 Query: 519 PGKLKVLAKSTEGTETIEGVYNTVLLAIGRDSCTRKIGLEKIGVKINEKSGKIPVNDVEQ 578 G L ++ E ++G V+ IG + TR E G+ + G I VND + Sbjct: 2495 DGLRLALGETGEEVLVVDG----VVAGIGIEPXTRLA--EAAGLPV---EGGIVVNDFCR 2647 Query: 579 TNVPYVYAVGDILEDKPELTPVAIQSGKLLAQRLFGA 615 + P TP+A+ +L + R GA Sbjct: 2648 PGI-------------PTCTPLAMP--RLFSARCLGA 2713 >Plasmodium_yoelii_yoelii_str._17XNL|MALPY02922|2002-09-10|ds- DNA|Plasmodium_yoelii_TIGR Length = 3310 Score = 38.9 bits (89), Expect = 0.009, Method: Composition-based stats. Identities = 27/82 (32%), Positives = 36/82 (43%), Gaps = 7/82 (8%) Frame = +2 Query: 402 GQETYYTAAQFVIATGERPRYLGIQGDKEY-------CITSDDLFSLPYCPGKTLVVGAS 454 G YT +IATG RYLG+ ++ Y C T D F Y V+G Sbjct: 2675 GDAGVYTCDALIIATGASARYLGLPSEEAYKGRGVSACATCDGFF---YKGKHVAVIGGG 2845 Query: 455 YVALECAGFLAGFGLDVTVMVR 476 A+E A +L+ VTV+ R Sbjct: 2846 NTAVEEALYLSNIAAKVTVVHR 2911 >Plasmodium_yoelii_yoelii_str._17XNL|MALPY01678|2002-09-10|ds- DNA|Plasmodium_yoelii_TIGR Length = 7591 Score = 32.0 bits (71), Expect = 1.0, Method: Composition-based stats. Identities = 12/21 (57%), Positives = 16/21 (76%) Frame = +2 Query: 225 ITNQKTVPNIFVNKVHVGGCD 245 I+ + +VP IF+NK VGGCD Sbjct: 4955 ISGKSSVPRIFINKEFVGGCD 5017 >Plasmodium_yoelii_yoelii_str._17XNL|MALPY00707|2002-09-10|ds- DNA|Plasmodium_yoelii_TIGR Length = 12029 Score = 30.0 bits (66), Expect = 4.7, Method: Composition-based stats. Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 3/51 (5%) Frame = +2 Query: 638 CGLSEEKAI---EVYKKENLEIYHTLFWPLEWTVAGRENNTCYAKIICNKF 685 C + EKAI E+Y + N + Y+ ++ P ++ N+ C K CN+F Sbjct: 6701 CDKNLEKAIKFVEIYDELNEDYYNGIYSPYNQLLSTLSNDYCNLKNKCNQF 6853 >Plasmodium_yoelii_yoelii_str._17XNL|MALPY01316|2002-09-10|ds- DNA|Plasmodium_yoelii_TIGR Length = 15147 Score = 29.6 bits (65), Expect = 5.2, Method: Composition-based stats. Identities = 12/26 (46%), Positives = 15/26 (57%) Frame = -1 Query: 637 CCGLSEEKAIEVYKKENLEIYHTLFW 662 CCG K I +Y N+ IY+ LFW Sbjct: 14181 CCG--GNKYIHIYDNINIRIYYVLFW 14110 >Plasmodium_yoelii_yoelii_str._17XNL|MALPY02887|2002-09-10|ds- DNA|Plasmodium_yoelii_TIGR Length = 2072 Score = 29.6 bits (65), Expect = 6.3, Method: Composition-based stats. Identities = 19/45 (42%), Positives = 21/45 (46%), Gaps = 1/45 (2%) Frame = +3 Query: 101 RPGRARSESETLERSPPQSPGPGKAG-DAPNRRSGHVRGARVLSP 144 RP R R SE SPP+ P PG A A R G R A+ P Sbjct: 1668 RP*RNRKXSEAPAASPPRRPAPGAASFPASLGRHGTRRRAKASRP 1802 TBLASTN 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= SPP00000079_1.0 # Protein # Thioredoxin reductase 1 (TR1) # Mus musculus # Complete (616 letters) Database: genome.fa 2960 sequences; 20,171,213 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Plasmodium_yoelii_yoelii_str._17XNL|MALPY00659|2002-09-10|ds-DNA... 397 e-110 Plasmodium_yoelii_yoelii_str._17XNL|MALPY00317|2002-09-10|ds-DNA... 177 2e-44 Plasmodium_yoelii_yoelii_str._17XNL|MALPY01482|2002-09-10|ds-DNA... 119 3e-27 Plasmodium_yoelii_yoelii_str._17XNL|MALPY00156|2002-09-10|ds-DNA... 68 1e-11 Plasmodium_yoelii_yoelii_str._17XNL|MALPY02922|2002-09-10|ds-DNA... 52 1e-06 Plasmodium_yoelii_yoelii_str._17XNL|MALPY02913|2002-09-10|ds-DNA... 41 0.002 >Plasmodium_yoelii_yoelii_str._17XNL|MALPY00659|2002-09-10|ds- DNA|Plasmodium_yoelii_TIGR Length = 14426 Score = 397 bits (1019), Expect = e-110, Method: Composition-based stats. Identities = 225/504 (44%), Positives = 294/504 (58%), Gaps = 21/504 (4%) Frame = -2 Query: 124 SYDFDLIIIXXXXXXXXXXXXXXXXXXFDKKVLVLDFVTPTPLGTRWGLGGTCVNVGCIP 183 +YD+D I+I KVL+ DFV P+ GT+WG+GGTCVNVGC+P Sbjct: 13339 NYDYDYIVIGGGPGGMASAKEAASHGA---KVLLFDFVKPSSQGTKWGIGGTCVNVGCVP 13169 Query: 184 KKLMHQAALLGQALK-DSRNYGWKVEDTVKHDWEKMTESVQSHIGSLNWGYRVALREKKV 242 KKLMH A +G K DS YGW+ D +KHDW K+ +VQSHI SLN+ Y V L+ KV Sbjct: 13168 KKLMHYAGNMGTLFKSDSDKYGWEC-DNLKHDWNKLVSTVQSHIRSLNFSYMVGLKSSKV 12992 Query: 243 VYENAYGRFIGPHRI--VATNNKGKEKIYSAERFLIATGERPRYLGIPGD----KEYCIS 296 Y N + + + + KE + + LIATG RP IP D KE I+ Sbjct: 12991 KYINGLAKLKDKNTVSYYLKGDTSKEDCVTGKYILIATGCRPN---IPDDVIGAKELSIT 12821 Query: 297 SDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIGEH 356 SDD+FSL PGKTLVVGASYVALECAGFL +G D T+ VRSI+LRGFDQ ANKI + Sbjct: 12820 SDDIFSLKKNPGKTLVVGASYVALECAGFLNSLGCDTTISVRSIILRGFDQQCANKIKLY 12641 Query: 357 MEEHGIKFIRQFVPTKIEQIEAGTPGRLRVTAQSTNSEETIEGEFNTVLLAVGRDSCTRT 416 MEE G+ F+ +P K+ T ++ N+ + F+TVL A+GR Sbjct: 12640 MEEQGVTFMCGVLPKKL------TKENDKILVHFNNNTTEL---FDTVLYAIGRKGDIDG 12488 Query: 417 IGLETVGVKINEKTGKIPVTDEEQTNVPYIYAIGDILEGKLELTPVAIQAGRLLAQRLYG 476 + LE + + IN KI TN+P I+A+GDI E EL PVAI+AG +LA+RL+ Sbjct: 12487 LNLEKLNININNNNNKIITDKFSCTNIPNIFAVGDIAENVPELAPVAIKAGEILARRLFK 12308 Query: 477 GSNVKCDYDNVPTTVFTPLEYGCCGLSEEKAVEKFGEENIEVYHSFFWPLEWTVPSRD-- 534 SN Y+ +PT+++TP+EYG CG SEE+A E+FG+ NIE++ F LE + R Sbjct: 12307 NSNEIMKYNLIPTSIYTPIEYGSCGYSEEQAYEQFGKNNIEIFLQEFNNLEISAVHRTKH 12128 Query: 535 ------------NNKCYAKIICNLKDDERVVGFHVLGPNAGEVTQGFAAALKCGLTKQQL 582 ++ C +K++C +D RV+GFH +GPNAGEVTQG A ALK K Sbjct: 12127 LKVQKDEYDVDISSTCLSKLVCLKNEDNRVIGFHYVGPNAGEVTQGMALALKLNAKKSDF 11948 Query: 583 DSTIGIHPVCAEIFTTLSVTKRSG 606 D+ IGIHP AE F LS+T SG Sbjct: 11947 DNCIGIHPTDAESFMNLSITLSSG 11876 >Plasmodium_yoelii_yoelii_str._17XNL|MALPY00317|2002-09-10|ds- DNA|Plasmodium_yoelii_TIGR Length = 33648 Score = 177 bits (448), Expect = 2e-44, Method: Composition-based stats. Identities = 140/458 (30%), Positives = 222/458 (48%), Gaps = 44/458 (9%) Frame = +3 Query: 186 LMHQAALLGQALKDSRNYGWKVEDTVKHDWEKMTESVQSHIGSLNWGYRVALREKKV-VY 244 +M AA + L++SR+YG+ T + ++ E +I LN YR L+ V VY Sbjct: 24528 IMFNAASIHDILQNSRHYGFDTRFTF--NLPQLVERRDKYIRRLNDIYRNNLKNDNVEVY 24701 Query: 245 ENAYGRFIGPHRIVATNNKGKE-----KIYSAERFLIATGERPRYLGIPGDKEYCISSDD 299 E ++ + NK ++ +I + LIA G P + + G E+ ISSD+ Sbjct: 24702 EGTASLINERKVLIKSKNKSEDDEKNHEIIEGKNILIAVGNTPVFPTVKG-VEHTISSDE 24878 Query: 300 LFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRSI-LLRGFDQDMANKIGEHME 358 F + + ++G Y+A+E + +G++ + R LLR FD+ + N++ M+ Sbjct: 24879 FFDIKEAK-RIGIIGGGYIAVELINVIKRLGIESYIFARGKRLLRKFDESIVNELENDMK 25055 Query: 359 EHGIKFIRQFVPTKIEQIEAGTPGRLRVTAQSTNSEETIEGEFNTVLLAVGRDSCTRTIG 418 ++ I I +E+IE L + E + V+ VGR T+ + Sbjct: 25056 KNNINIITM---ANVEEIEKVHDKNLTIYLNDGRKFE----HLDYVIYCVGRSPNTKNLN 25214 Query: 419 LETVGVKINEKTGKIPVTDEEQTNVPYIYAIGD---ILEGK------------------- 456 LE + I K I V D ++TN+ I+A+GD + +GK Sbjct: 25215 LEKL--NITTKNDYIIVDDNQRTNLKNIFAVGDCCMVKKGKELEDLNLLKLYDEQIYINN 25388 Query: 457 -----------LELTPVAIQAGRLLAQRLYGGSNVKCDYDNVPTTVFTPLEYGCCGLSEE 505 ++LTPVAI AGRLLA R++ K +Y +PT +F+ G GLSEE Sbjct: 25389 KKNDTEDSFYNVQLTPVAINAGRLLADRIFLNKTRKTNYSLIPTVIFSHPPIGTIGLSEE 25568 Query: 506 KAVEKFGEENIEVYHSFFWPLEWTV----PSRDNNKCYAKIICNLKDDERVVGFHVLGPN 561 +A+ +G+EN+++Y S F L ++V PS+ K Y K++C + +E + G H++G N Sbjct: 25569 EAINIYGKENVKIYESKFTNLFFSVYDIEPSQ-KEKTYIKLVC-VGKEELIKGLHIIGLN 25742 Query: 562 AGEVTQGFAAALKCGLTKQQLDSTIGIHPVCAEIFTTL 599 A E+ QGFA ALK TK+ D TI IHP AE TL Sbjct: 25743 ADEIIQGFAVALKMNATKKDFDETIPIHPTAAEELVTL 25856 Score = 31.2 bits (69), Expect = 1.4, Method: Composition-based stats. Identities = 11/12 (91%), Positives = 12/12 (100%) Frame = +2 Query: 172 LGGTCVNVGCIP 183 LGGTCVNVGC+P Sbjct: 24356 LGGTCVNVGCVP 24391 >Plasmodium_yoelii_yoelii_str._17XNL|MALPY01482|2002-09-10|ds- DNA|Plasmodium_yoelii_TIGR Length = 7932 Score = 119 bits (299), Expect = 3e-27, Method: Composition-based stats. Identities = 128/465 (27%), Positives = 210/465 (45%), Gaps = 35/465 (7%) Frame = +2 Query: 172 LGGTCVNVGCIPKK-LMHQAALLGQALKDSRNYGWKVEDTVKHDWEKMTESVQSHIGSLN 230 LGGTC+N GCIP K L+H A ++ + G + D VK D E++ + +G+L Sbjct: 4346 LGGTCLNRGCIPSKSLLHIAHNYYESKNKFKECGILI-DNVKLDIEQVHKHKNKCMGNLA 4522 Query: 231 WGYRVALREKKVVYENAYGRFI-GPHRIVATNNKGKEKIYSAERFLIATGERPRYLGIP- 288 G ++ V + G I G +V T N+G++K Y+AER +IATG +P + IP Sbjct: 4523 DGISFLYKKNNVKHIIGRGSIIDGNTILVETENEGQKK-YTAERIVIATGSKP--IEIPL 4693 Query: 289 -------------------GDKEYCISSDDLFSLPYCPGKTLVVGASYVALECAGFLAGI 329 D + +SDD+ + P ++G + LE + Sbjct: 4694 KKLDDNNINDVENVKDILEYDHKLIQTSDDILNFKEIPKTMSIIGGGVIGLEIGSVFSKF 4873 Query: 330 GLDVTVMVRSILLRGF-DQDMANKIGEHMEEHGIKFIRQFVPTKIEQIEAGTPGRLRVTA 388 G DVTV + L GF D D++ + + +E+ IKF+ F + I T + A Sbjct: 4874 GSDVTVYEYNSRLCGFLDPDVSKVLQKVLEKIKIKFM--FNTSIIGGNLNTTNNEAILYA 5047 Query: 389 QSTNSEETIEGEFNTVLLAVGRDSCTRTIGLETVGVKINEKTGKIPVTDEEQTNV---PY 445 + + + + + + VL+ VGR + I LE + +++N K KI V +E NV P Sbjct: 5048 RDNKTNQIKKVKSDIVLVCVGRKANLENINLEKLSIELN-KNKKIQV--DEYFNVKSQPT 5218 Query: 446 IYAIGDILEGKLELTPVAIQAGRLLAQRLYG------GSNVKCDYDNVPTTVFTPLEYGC 499 I AIGD ++G + L A + G ++A L+ +YD +P+ ++T E Sbjct: 5219 IKAIGDAIDGSM-LAHKAEEEGYIVADMLFNELKNNKKKKNHINYDLIPSVIYTHPEVAS 5395 Query: 500 CGLSEEKAVE-KFGEENIEVYHSFFWPLEWTVPSR--DNNKCYAKIICNLKDDERVVGFH 556 G +E+K E K Y S +P SR D+ K+I KD ++G Sbjct: 5396 VGYNEQKCKELKLN------YKSVSFPFAANSRSRTIDDYDGLIKLIVE-KDTNVILGSQ 5554 Query: 557 VLGPNAGEVTQGFAAALKCGLTKQQLDSTIGIHPVCAEIFTTLSV 601 ++G NA E+ + T + L I HP +E+ +++ Sbjct: 5555 IIGNNASELILPLSIYASHKGTSKNLSKIIYPHPTFSEVIKEVAL 5689 >Plasmodium_yoelii_yoelii_str._17XNL|MALPY00156|2002-09-10|ds- DNA|Plasmodium_yoelii_TIGR Length = 21720 Score = 68.2 bits (165), Expect = 1e-11, Method: Composition-based stats. Identities = 107/443 (24%), Positives = 173/443 (39%), Gaps = 86/443 (19%) Frame = -1 Query: 167 GTRWGLGGTCVNVGCIPKKLMHQAALLGQALKDSR---NYGW-------KVEDTVKH--- 213 G LGGTCVNVGCIP K + A + LK+ NYG K +D +K Sbjct: 20001 GNEESLGGTCVNVGCIPSKALLYATNKYRELKNISKLCNYGIYSNAYIDKEKDEIKSTQL 19822 Query: 214 -------DWEKMTESVQSHIGSLNWGYRVALREKK---------VVYENAYGRFIGPHRI 257 + K+ E Q+ I L G ++ K V+Y++ Y I + I Sbjct: 19821 IADSICINTNKLKEYTQNVIKKLKSGITHGMKNTKFNKNPQSVQVIYDHGY--IINKNTI 19648 Query: 258 VATNNKGKEKIYSAERFLIATGERPRY-LGIPGDKEYCISSDDLFSLPYCPGKTLVVGAS 316 + NK ++Y A+ ++ATG P I D + +SD +L ++G Sbjct: 19647 QSKKNK---QLYKAKNIILATGSIPNVPQNINVDHKTVFTSDQAINLQGLQNYISIIGMG 19477 Query: 317 YVALECAGFLAGIGLDVTVMVRSILLRGF-DQDMANKIGEHMEEHGIKF--IRQFVPTKI 373 + LE + +G ++T S F D D+A ++ E +K I F+ T+I Sbjct: 19476 IIGLEFSDIYTALGSEITFFEYSPEFLPFVDTDIA----KYFENVFLKTKPINYFLNTEI 19309 Query: 374 EQIEAGTPG---------RLRVTAQSTNSEETIEGE------FNTVLLAVGRDSCTRTIG 418 + + + G R + ST S I GE ++ L+A GR T IG Sbjct: 19308 KYVHPASNGKPVVIGYSLRTKTNPDSTASTTQINGEHVKELHVDSCLVATGRKPNTENIG 19129 Query: 419 LETVGVKINE-----------KTGKIPVTDEEQTNV------------PYIYAIGDILEG 455 LE + K+N+ + I TD++ N I+ IGD Sbjct: 19128 LENLNAKMNKGFVLVDDQLRVQIEPIQKTDQKNANTNELNQSIDTQVYDNIFCIGDANGK 18949 Query: 456 KLELTPVAIQAGRL---------------LAQRLYGGSNVKCDYDNVPTTVFTPLEYGCC 500 ++ + QA R+ + + N Y N+P+ +T E Sbjct: 18948 QMLAHTASHQALRVIDYIAKKEKKEEKEEIINPIENILNKPIIYKNIPSVCYTNPELAFV 18769 Query: 501 GLSEEKAVEKFGEENIEVYHSFF 523 G SE+ A K ++I+V +++ Sbjct: 18768 GFSEKDA-NKLYPDSIDVEITYY 18703 >Plasmodium_yoelii_yoelii_str._17XNL|MALPY02922|2002-09-10|ds- DNA|Plasmodium_yoelii_TIGR Length = 3310 Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats. Identities = 51/202 (25%), Positives = 87/202 (43%), Gaps = 13/202 (6%) Frame = +2 Query: 264 GKEKIYSAERFLIATGERPRYLGIPGDKEY-------CISSDDLFSLPYCPGKTLVVGAS 316 G +Y+ + +IATG RYLG+P ++ Y C + D F Y V+G Sbjct: 2675 GDAGVYTCDALIIATGASARYLGLPSEEAYKGRGVSACATCDGFF---YKGKHVAVIGGG 2845 Query: 317 YVALECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIGEHMEEHGIKFIRQFVPTKIEQI 376 A+E A +L+ I VTV+ R R ++ +++K+ E + V ++ Sbjct: 2846 NTAVEEALYLSNIAAKVTVVHRRDKFRS-EKILSDKLLERAANGNVSIEWNSVLEEVLGD 3022 Query: 377 EAGTPG-RLRVTAQSTNSEETIEGEFNTVLLAVGRDSCTRTIGLETVGVKINEKTGKIPV 435 + G G R+R T+ + +EG V +A+G T E ++ + G I V Sbjct: 3023 DMGVTGMRIRNVQDGTSKDIALEG----VFIAIGHSPNT-----EIFAGQLGMRNGYIVV 3175 Query: 436 TDEEQ-----TNVPYIYAIGDI 452 + T V ++A GD+ Sbjct: 3176 KGGSEGGATATTVEGVFAAGDV 3241 >Plasmodium_yoelii_yoelii_str._17XNL|MALPY02913|2002-09-10|ds- DNA|Plasmodium_yoelii_TIGR Length = 3288 Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats. Identities = 29/81 (35%), Positives = 42/81 (51%), Gaps = 4/81 (4%) Frame = +2 Query: 260 TNNKGKEKIYSAERFLIATGERPRYLGIPGDK-EYCISSDDLF---SLPYCPGKTLVVGA 315 T+++G IY E+ L+ATG RPR GD Y + DD F +L K ++G Sbjct: 2129 TDDEGT--IYRFEKLLLATGGRPRRFPFGGDDILYFRTVDDYFRLRTLTETRRKFAIIGG 2302 Query: 316 SYVALECAGFLAGIGLDVTVM 336 ++ E A LA IG DV ++ Sbjct: 2303 GFIGSEIAAALASIGKDVVMI 2365 TBLASTN 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= SPP00000080_1.0 # Protein # Thioredoxin reductase 2 (TR2) # Mus musculus # Complete (496 letters) Database: genome.fa 2960 sequences; 20,171,213 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Plasmodium_yoelii_yoelii_str._17XNL|MALPY00659|2002-09-10|ds-DNA... 378 e-105 Plasmodium_yoelii_yoelii_str._17XNL|MALPY00317|2002-09-10|ds-DNA... 158 6e-39 Plasmodium_yoelii_yoelii_str._17XNL|MALPY01482|2002-09-10|ds-DNA... 87 2e-17 Plasmodium_yoelii_yoelii_str._17XNL|MALPY00156|2002-09-10|ds-DNA... 50 2e-06 Plasmodium_yoelii_yoelii_str._17XNL|MALPY02913|2002-09-10|ds-DNA... 33 0.24 >Plasmodium_yoelii_yoelii_str._17XNL|MALPY00659|2002-09-10|ds- DNA|Plasmodium_yoelii_TIGR Length = 14426 Score = 378 bits (971), Expect = e-105, Method: Composition-based stats. Identities = 213/493 (43%), Positives = 293/493 (59%), Gaps = 48/493 (9%) Frame = -2 Query: 43 FDLLVIGGGSGGLACAKEAAQLGKKVAVADYVEPSPRGTKWGLGGTCVNVGCIPKKLMHQ 102 +D +VIGGG GG+A AKEAA G KV + D+V+PS +GTKWG+GGTCVNVGC+PKKLMH Sbjct: 13330 YDYIVIGGGPGGMASAKEAASHGAKVLLFDFVKPSSQGTKWGIGGTCVNVGCVPKKLMHY 13151 Query: 103 AALLGGMIR-DAHHYGWEVAQPVQHNWKTMAEAVQNHVKSLNWGHRVQLQDRKVKYFNIK 161 A +G + + D+ YGWE ++H+W + VQ+H++SLN+ + V L+ KVKY N Sbjct: 13150 AGNMGTLFKSDSDKYGWECDN-LKHDWNKLVSTVQSHIRSLNFSYMVGLKSSKVKYINGL 12974 Query: 162 ASFVDEHTVRGVDKG--GKATLLSAEHIVIATGGRPRYPTQVKGALEYGITSDDIFWLKE 219 A D++TV KG K ++ ++I+IATG RP P V GA E ITSDDIF LK+ Sbjct: 12973 AKLKDKNTVSYYLKGDTSKEDCVTGKYILIATGCRPNIPDDVIGAKELSITSDDIFSLKK 12794 Query: 220 SPGKTSVPAAEDVALECAGFLTGIGLDTTVMMRSIPLRGFDQQMSSLVTEHMESHGTQFL 279 +PGKT V A VALECAGFL +G DTT+ +RSI LRGFDQQ ++ + +ME G F+ Sbjct: 12793 NPGKTLVVGASYVALECAGFLNSLGCDTTISVRSIILRGFDQQCANKIKLYMEEQGVTFM 12614 Query: 280 KGCVPSHIKKLPTNQLQVTWEDHASGKEDTGTFDTVLWAIGRVPETRTLNLEKAGISTNP 339 G +P + K +++ V + ++ T FDTVL+AIGR + LNLEK I+ N Sbjct: 12613 CGVLPKKLTK-ENDKILVHFNNNT-----TELFDTVLYAIGRKGDIDGLNLEKLNININN 12452 Query: 340 KNQKIIVDAQEATSVPHIYAIGDVAEGRPELTPTAIKAGKLLAQRLFGKSSTLMDYSNVY 399 N KII D T++P+I+A+GD+AE PEL P AIKAG++LA+RLF S+ +M Y+ + Sbjct: 12451 NNNKIITDKFSCTNIPNIFAVGDIAENVPELAPVAIKAGEILARRLFKNSNEIMKYNLIP 12272 Query: 400 HAYYKPLEFTVA--------------------------------------------DRD- 414 + Y P+E+ D D Sbjct: 12271 TSIYTPIEYGSCGYSEEQAYEQFGKNNIEIFLQEFNNLEISAVHRTKHLKVQKDEYDVDI 12092 Query: 415 ASQCYIKMVCMREPPQLVLGLHFLGPNAGEVTQGFALGIKCGASYAQVMQTVGIHPTCSE 474 +S C K+VC++ V+G H++GPNAGEVTQG AL +K A + +GIHPT +E Sbjct: 12091 SSTCLSKLVCLKNEDNRVIGFHYVGPNAGEVTQGMALALKLNAKKSDFDNCIGIHPTDAE 11912 Query: 475 EVVKLHISKRSGL 487 + L I+ SGL Sbjct: 11911 SFMNLSITLSSGL 11873 >Plasmodium_yoelii_yoelii_str._17XNL|MALPY00317|2002-09-10|ds- DNA|Plasmodium_yoelii_TIGR Length = 33648 Score = 158 bits (399), Expect = 6e-39, Method: Composition-based stats. Identities = 124/456 (27%), Positives = 215/456 (47%), Gaps = 74/456 (16%) Frame = +3 Query: 99 LMHQAALLGGMIRDAHHYGWEVAQPVQHNWKTMAEAVQNHVKSLNWGHRVQLQDRKVKYF 158 +M AA + +++++ HYG++ N + E +++ LN +R L++ V+ + Sbjct: 24528 IMFNAASIHDILQNSRHYGFDTR--FTFNLPQLVERRDKYIRRLNDIYRNNLKNDNVEVY 24701 Query: 159 NIKASFVDEHTV------RGVDKGGKATLLSAEHIVIATGGRPRYPTQVKGALEYGITSD 212 AS ++E V + D ++ ++I+IA G P +PT VKG +E+ I+SD Sbjct: 24702 EGTASLINERKVLIKSKNKSEDDEKNHEIIEGKNILIAVGNTPVFPT-VKG-VEHTISSD 24875 Query: 213 DIFWLKESPGKTSVPAAEDVALECAGFLTGIGLDTTVMMRSIPL-RGFDQQMSSLVTEHM 271 + F +KE+ + + +A+E + +G+++ + R L R FD+ + + + M Sbjct: 24876 EFFDIKEAK-RIGIIGGGYIAVELINVIKRLGIESYIFARGKRLLRKFDESIVNELENDM 25052 Query: 272 ESHGTQFLKGCVPSHIKKLPTNQLQVTWEDHASGKEDTGTFDTVLWAIGRVPETRTLNLE 331 + + + I+K+ L + D + D V++ +GR P T+ LNLE Sbjct: 25053 KKNNINIITMANVEEIEKVHDKNLTIYLNDGRKFEH----LDYVIYCVGRSPNTKNLNLE 25220 Query: 332 KAGISTNPKNQKIIVDAQEATSVPHIYAIGD---VAEGRP-------------------- 368 K I+T KN IIVD + T++ +I+A+GD V +G+ Sbjct: 25221 KLNITT--KNDYIIVDDNQRTNLKNIFAVGDCCMVKKGKELEDLNLLKLYDEQIYINNKK 25394 Query: 369 ----------ELTPTAIKAGKLLAQRLFGKSSTLMDYS---------------------- 396 +LTP AI AG+LLA R+F + +YS Sbjct: 25395 NDTEDSFYNVQLTPVAINAGRLLADRIFLNKTRKTNYSLIPTVIFSHPPIGTIGLSEEEA 25574 Query: 397 ---------NVYHAYYKPLEFTVADRDASQ---CYIKMVCMREPPQLVLGLHFLGPNAGE 444 +Y + + L F+V D + SQ YIK+VC+ + +L+ GLH +G NA E Sbjct: 25575 INIYGKENVKIYESKFTNLFFSVYDIEPSQKEKTYIKLVCVGK-EELIKGLHIIGLNADE 25751 Query: 445 VTQGFALGIKCGASYAQVMQTVGIHPTCSEEVVKLH 480 + QGFA+ +K A+ +T+ IHPT +EE+V LH Sbjct: 25752 IIQGFAVALKMNATKKDFDETIPIHPTAAEELVTLH 25859 Score = 32.0 bits (71), Expect = 0.64, Method: Composition-based stats. Identities = 11/12 (91%), Positives = 12/12 (100%) Frame = +2 Query: 85 LGGTCVNVGCIP 96 LGGTCVNVGC+P Sbjct: 24356 LGGTCVNVGCVP 24391 >Plasmodium_yoelii_yoelii_str._17XNL|MALPY01482|2002-09-10|ds- DNA|Plasmodium_yoelii_TIGR Length = 7932 Score = 87.0 bits (214), Expect = 2e-17, Method: Composition-based stats. Identities = 130/499 (26%), Positives = 199/499 (39%), Gaps = 64/499 (12%) Frame = +2 Query: 42 SFDLLVIGGGSGGLACAKEAAQLGKKVAVADYVEPSPRGTKWGLGGTCVNVGCIPKKLMH 101 S+D++VIGGG GG C+ Q K+ V + + LGGTC+N GCIP K Sbjct: 4241 SYDVIVIGGGPGGYVCSIRCGQ--NKLKVLNVNDDKK------LGGTCLNRGCIPSK--- 4387 Query: 102 QAALLGGMIRDAHHYGWEVAQPVQH------NWKTMAEAVQNH----VKSLNWGHRVQLQ 151 ++ AH+Y +E + N K E V H + +L G + Sbjct: 4388 ------SLLHIAHNY-YESKNKFKECGILIDNVKLDIEQVHKHKNKCMGNLADGISFLYK 4546 Query: 152 DRKVKYFNIKASFVDEHTVRGVDKGGKATLLSAEHIVIATGGRP-RYPTQ---------- 200 VK+ + S +D +T+ + +AE IVIATG +P P + Sbjct: 4547 KNNVKHIIGRGSIIDGNTILVETENEGQKKYTAERIVIATGSKPIEIPLKKLDDNNINDV 4726 Query: 201 --VKGALEYG----ITSDDIFWLKESPGKTSVPAAEDVALECAGFLTGIGLDTTVMMRSI 254 VK LEY TSDDI KE P S+ + LE + G D TV + Sbjct: 4727 ENVKDILEYDHKLIQTSDDILNFKEIPKTMSIIGGGVIGLEIGSVFSKFGSDVTVYEYNS 4906 Query: 255 PLRGF-DQQMSSLVTEHMESHGTQFL-KGCVPSHIKKLPTNQLQVTWEDHASGKEDTGTF 312 L GF D +S ++ + +E +F+ + N+ + D+ + + Sbjct: 4907 RLCGFLDPDVSKVLQKVLEKIKIKFMFNTSIIGGNLNTTNNEAILYARDNKTNQIKKVKS 5086 Query: 313 DTVLWAIGRVPETRTLNLEKAGISTNPKNQKIIVDAQ-EATSVPHIYAIGDVAEGRPELT 371 D VL +GR +NLEK I N KN+KI VD S P I AIGD +G L Sbjct: 5087 DIVLVCVGRKANLENINLEKLSIELN-KNKKIQVDEYFNVKSQPTIKAIGDAIDGS-MLA 5260 Query: 372 PTAIKAGKLLAQRLFGK----------------SSTLMDYSNVYHA------------YY 403 A + G ++A LF + S + + V Y Sbjct: 5261 HKAEEEGYIVADMLFNELKNNKKKKNHINYDLIPSVIYTHPEVASVGYNEQKCKELKLNY 5440 Query: 404 KPLEFTVADRDASQC------YIKMVCMREPPQLVLGLHFLGPNAGEVTQGFALGIKCGA 457 K + F A S+ IK++ ++ ++LG +G NA E+ ++ Sbjct: 5441 KSVSFPFAANSRSRTIDDYDGLIKLIVEKD-TNVILGSQIIGNNASELILPLSIYASHKG 5617 Query: 458 SYAQVMQTVGIHPTCSEEV 476 + + + + HPT SE + Sbjct: 5618 TSKNLSKIIYPHPTFSEVI 5674 >Plasmodium_yoelii_yoelii_str._17XNL|MALPY00156|2002-09-10|ds- DNA|Plasmodium_yoelii_TIGR Length = 21720 Score = 50.1 bits (118), Expect = 2e-06, Method: Composition-based stats. Identities = 85/359 (23%), Positives = 136/359 (37%), Gaps = 52/359 (14%) Frame = -1 Query: 43 FDLLVIGGGSGGLACAKEAAQLGKKVAVADYVEPSPRGTKWGLGGTCVNVGCIPKKLMHQ 102 +D+ ++G G GG A A A + KV + G + LGGTCVNVGCIP K + Sbjct: 20091 YDVAILGCGVGGHAAAINAIEKNLKVIIF-------AGNEESLGGTCVNVGCIPSKALLY 19933 Query: 103 AALLGGMIRDAH---HYGWE-----------------VAQPVQHNWKTMAEAVQNHVKSL 142 A +++ +YG +A + N + E QN +K L Sbjct: 19932 ATNKYRELKNISKLCNYGIYSNAYIDKEKDEIKSTQLIADSICINTNKLKEYTQNVIKKL 19753 Query: 143 NWGHRVQLQDRK-------VKYFNIKASFVDEHTVRGVDKGGKATLLSAEHIVIATGGRP 195 G +++ K V+ ++++T++ K K L A++I++ATG P Sbjct: 19752 KSGITHGMKNTKFNKNPQSVQVIYDHGYIINKNTIQ--SKKNK-QLYKAKNIILATGSIP 19582 Query: 196 RYPTQVKGALEYGITSDDIFWLKESPGKTSVPAAEDVALECAGFLTGIGLDTT------- 248 P + + TSD L+ S+ + LE + T +G + T Sbjct: 19581 NVPQNINVDHKTVFTSDQAINLQGLQNYISIIGMGIIGLEFSDIYTALGSEITFFEYSPE 19402 Query: 249 ---------------VMMRSIPLRGFDQQMSSLVTEHMESHGTQFLKGCVPSHIKKLPTN 293 V +++ P+ F L TE H K V + + TN Sbjct: 19401 FLPFVDTDIAKYFENVFLKTKPINYF------LNTEIKYVHPASNGKPVVIGYSLRTKTN 19240 Query: 294 QLQVTWEDHASGKE-DTGTFDTVLWAIGRVPETRTLNLEKAGISTNPKNQK--IIVDAQ 349 +G+ D+ L A GR P T + LE + N K K ++VD Q Sbjct: 19239 PDSTASTTQINGEHVKELHVDSCLVATGRKPNTENIGLE----NLNAKMNKGFVLVDDQ 19075 >Plasmodium_yoelii_yoelii_str._17XNL|MALPY02913|2002-09-10|ds- DNA|Plasmodium_yoelii_TIGR Length = 3288 Score = 33.5 bits (75), Expect = 0.24, Method: Composition-based stats. Identities = 29/109 (26%), Positives = 46/109 (42%), Gaps = 5/109 (4%) Frame = +2 Query: 178 KATLLSAEHIVIATGGRPRYPTQVKGALEYGITSDDIFWLK---ESPGKTSVPAAEDVAL 234 + T+ E +++ATGGRPR + Y T DD F L+ E+ K ++ + Sbjct: 2138 EGTIYRFEKLLLATGGRPRRFPFGGDDILYFRTVDDYFRLRTLTETRRKFAIIGGGFIGS 2317 Query: 235 ECAGFLTGIGLDTTVMMRS--IPLRGFDQQMSSLVTEHMESHGTQFLKG 281 E A L IG D ++ I R F + + + G + L G Sbjct: 2318 EIAAALASIGKDVVMIFPEACIGARVFPGNLCRFLDGYYRDQGVELLSG 2464 TBLASTN 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= SPP00000081_1.0 # Protein # Thioredoxin reductase 3 (TR3) # Mus musculus # Complete (615 letters) Database: genome.fa 2960 sequences; 20,171,213 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Plasmodium_yoelii_yoelii_str._17XNL|MALPY00659|2002-09-10|ds-DNA... 402 e-112 Plasmodium_yoelii_yoelii_str._17XNL|MALPY00317|2002-09-10|ds-DNA... 158 8e-39 Plasmodium_yoelii_yoelii_str._17XNL|MALPY01482|2002-09-10|ds-DNA... 112 4e-25 Plasmodium_yoelii_yoelii_str._17XNL|MALPY00156|2002-09-10|ds-DNA... 47 2e-05 Plasmodium_yoelii_yoelii_str._17XNL|MALPY02913|2002-09-10|ds-DNA... 46 6e-05 Plasmodium_yoelii_yoelii_str._17XNL|MALPY02922|2002-09-10|ds-DNA... 44 3e-04 Plasmodium_yoelii_yoelii_str._17XNL|MALPY02825|2002-09-10|ds-DNA... 36 0.062 Plasmodium_yoelii_yoelii_str._17XNL|MALPY01588|2002-09-10|ds-DNA... 34 0.20 Plasmodium_yoelii_yoelii_str._17XNL|MALPY01678|2002-09-10|ds-DNA... 33 0.39 Plasmodium_yoelii_yoelii_str._17XNL|MALPY01068|2002-09-10|ds-DNA... 30 2.8 Plasmodium_yoelii_yoelii_str._17XNL|MALPY00707|2002-09-10|ds-DNA... 29 5.6 Plasmodium_yoelii_yoelii_str._17XNL|MALPY00157|2002-09-10|ds-DNA... 29 5.7 Plasmodium_yoelii_yoelii_str._17XNL|MALPY00865|2002-09-10|ds-DNA... 29 5.7 >Plasmodium_yoelii_yoelii_str._17XNL|MALPY00659|2002-09-10|ds- DNA|Plasmodium_yoelii_TIGR Length = 14426 Score = 402 bits (1032), Expect = e-112, Method: Composition-based stats. Identities = 229/503 (45%), Positives = 304/503 (60%), Gaps = 19/503 (3%) Frame = -2 Query: 123 DDSAHDYDXXXXXXXXXXXXCAKEAANLGKKVMVLDFVVPSPQGTTWGLGGTCVNVGCIP 182 D+S +DYD AKEAA+ G KV++ DFV PS QGT WG+GGTCVNVGC+P Sbjct: 13348 DNSNYDYDYIVIGGGPGGMASAKEAASHGAKVLLFDFVKPSSQGTKWGIGGTCVNVGCVP 13169 Query: 183 KKLMHQAALLGHALQ-DAKKYGWEYNQQVKHNWEAMTEAIQSHIGSLNWGYRVTLREKGV 241 KKLMH A +G + D+ KYGWE + +KH+W + +QSHI SLN+ Y V L+ V Sbjct: 13168 KKLMHYAGNMGTLFKSDSDKYGWECDN-LKHDWNKLVSTVQSHIRSLNFSYMVGLKSSKV 12992 Query: 242 TYVNSFGEFVDLHKIKATNK--KGQETFYTASKFVIATGERPRYLG-IQGDKEYCITSDD 298 Y+N + D + + K +E T +IATG RP + G KE ITSDD Sbjct: 12991 KYINGLAKLKDKNTVSYYLKGDTSKEDCVTGKYILIATGCRPNIPDDVIGAKELSITSDD 12812 Query: 299 LFSLPYCPGCTLVVGASYVGLECAGFLAGLGLDVTVMVRSVLLRGFDQEMAEKVGSYLEQ 358 +FSL PG TLVVGASYV LECAGFL LG D T+ VRS++LRGFDQ+ A K+ Y+E+ Sbjct: 12811 IFSLKKNPGKTLVVGASYVALECAGFLNSLGCDTTISVRSIILRGFDQQCANKIKLYMEE 12632 Query: 359 QGVKFQRKFTPI-LVQQLEKGLPGKLKVVAKSTEGPETVEGIYNTVLLAIGRDSCTRKIG 417 QGV F P L ++ +K L + +TE +++TVL AIGR + Sbjct: 12631 QGVTFMCGVLPKKLTKENDKIL---VHFNNNTTE-------LFDTVLYAIGRKGDIDGLN 12482 Query: 418 LEKIGVKINEKNGKIPVNDVEQTNVPHVYAIGDILDGKPELTPVAIQAGKLLARRLFGVS 477 LEK+ + IN N KI + TN+P+++A+GDI + PEL PVAI+AG++LARRLF S Sbjct: 12481 LEKLNININNNNNKIITDKFSCTNIPNIFAVGDIAENVPELAPVAIKAGEILARRLFKNS 12302 Query: 478 LEKCDYINIPTTVFTPLEYGCCGLSEEKAIEMYKKENLEVYHTLFWPLEWTVAGRD---- 533 E Y IPT+++TP+EYG CG SEE+A E + K N+E++ F LE + R Sbjct: 12301 NEIMKYNLIPTSIYTPIEYGSCGYSEEQAYEQFGKNNIEIFLQEFNNLEISAVHRTKHLK 12122 Query: 534 ----------NNTCYAKIICNKFDNERVVGFHLLGPNAGEITQGFAAAMKCGLTKQLLDD 583 ++TC +K++C K ++ RV+GFH +GPNAGE+TQG A A+K K D+ Sbjct: 12121 VQKDEYDVDISSTCLSKLVCLKNEDNRVIGFHYVGPNAGEVTQGMALALKLNAKKSDFDN 11942 Query: 584 TIGIHPTCGEVFTTLEITKSSGL 606 IGIHPT E F L IT SSGL Sbjct: 11941 CIGIHPTDAESFMNLSITLSSGL 11873 >Plasmodium_yoelii_yoelii_str._17XNL|MALPY00317|2002-09-10|ds- DNA|Plasmodium_yoelii_TIGR Length = 33648 Score = 158 bits (399), Expect = 8e-39, Method: Composition-based stats. Identities = 132/457 (28%), Positives = 214/457 (46%), Gaps = 43/457 (9%) Frame = +3 Query: 185 LMHQAALLGHALQDAKKYGWEYNQQVKHNWEAMTEAIQSHIGSLNWGYRVTLREKGVTYV 244 +M AA + LQ+++ YG ++ + N + E +I LN YR L+ V Sbjct: 24528 IMFNAASIHDILQNSRHYG--FDTRFTFNLPQLVERRDKYIRRLNDIYRNNLKNDNVEVY 24701 Query: 245 NSFGEFVDLHK--IKATNK----KGQETFYTASKFVIATGERPRYLGIQGDKEYCITSDD 298 ++ K IK+ NK + +IA G P + ++G E+ I+SD+ Sbjct: 24702 EGTASLINERKVLIKSKNKSEDDEKNHEIIEGKNILIAVGNTPVFPTVKG-VEHTISSDE 24878 Query: 299 LFSLPYCPGCTLVVGASYVGLECAGFLAGLGLDVTVMVRSV-LLRGFDQEMAEKVGSYLE 357 F + ++G Y+ +E + LG++ + R LLR FD+ + ++ + ++ Sbjct: 24879 FFDIKEAKR-IGIIGGGYIAVELINVIKRLGIESYIFARGKRLLRKFDESIVNELENDMK 25055 Query: 358 QQGVKFQRKFTPILVQQLEKGLPGKLKVVAKSTEGPETVEGIYNTVLLAIGRDSCTRKIG 417 + + T V+++EK L + E ++ V+ +GR T+ + Sbjct: 25056 KNNINI---ITMANVEEIEKVHDKNLTIYLNDGRKFEHLD----YVIYCVGRSPNTKNLN 25214 Query: 418 LEKIGVKINEKNGKIPVNDVEQTNVPHVYAIGD---ILDGKP------------------ 456 LEK+ I KN I V+D ++TN+ +++A+GD + GK Sbjct: 25215 LEKL--NITTKNDYIIVDDNQRTNLKNIFAVGDCCMVKKGKELEDLNLLKLYDEQIYINN 25388 Query: 457 ------------ELTPVAIQAGKLLARRLFGVSLEKCDYINIPTTVFTPLEYGCCGLSEE 504 +LTPVAI AG+LLA R+F K +Y IPT +F+ G GLSEE Sbjct: 25389 KKNDTEDSFYNVQLTPVAINAGRLLADRIFLNKTRKTNYSLIPTVIFSHPPIGTIGLSEE 25568 Query: 505 KAIEMYKKENLEVYHTLFWPLEWTV---AGRDNNTCYAKIICNKFDNERVVGFHLLGPNA 561 +AI +Y KEN+++Y + F L ++V Y K++C E + G H++G NA Sbjct: 25569 EAINIYGKENVKIYESKFTNLFFSVYDIEPSQKEKTYIKLVCVG-KEELIKGLHIIGLNA 25745 Query: 562 GEITQGFAAAMKCGLTKQLLDDTIGIHPTCGEVFTTL 598 EI QGFA A+K TK+ D+TI IHPT E TL Sbjct: 25746 DEIIQGFAVALKMNATKKDFDETIPIHPTAAEELVTL 25856 Score = 30.8 bits (68), Expect = 1.8, Method: Composition-based stats. Identities = 11/12 (91%), Positives = 12/12 (100%) Frame = +2 Query: 171 LGGTCVNVGCIP 182 LGGTCVNVGC+P Sbjct: 24356 LGGTCVNVGCVP 24391 >Plasmodium_yoelii_yoelii_str._17XNL|MALPY01482|2002-09-10|ds- DNA|Plasmodium_yoelii_TIGR Length = 7932 Score = 112 bits (281), Expect = 4e-25, Method: Composition-based stats. Identities = 122/455 (26%), Positives = 201/455 (44%), Gaps = 31/455 (6%) Frame = +2 Query: 171 LGGTCVNVGCIPKK-LMHQAALLGHALQDAKKYGWEYNQQVKHNWEAMTEAIQSHIGSLN 229 LGGTC+N GCIP K L+H A + K+ G + VK + E + + +G+L Sbjct: 4346 LGGTCLNRGCIPSKSLLHIAHNYYESKNKFKECGILIDN-VKLDIEQVHKHKNKCMGNLA 4522 Query: 230 WGYRVTLREKGVTYVNSFGEFVDLHKIKATNKKGQETFYTASKFVIATGERPRYLGIQG- 288 G ++ V ++ G +D + I + + YTA + VIATG +P + ++ Sbjct: 4523 DGISFLYKKNNVKHIIGRGSIIDGNTILVETENEGQKKYTAERIVIATGSKPIEIPLKKL 4702 Query: 289 -----------------DKEYCITSDDLFSLPYCPGCTLVVGASYVGLECAGFLAGLGLD 331 D + TSDD+ + P ++G +GLE + G D Sbjct: 4703 DDNNINDVENVKDILEYDHKLIQTSDDILNFKEIPKTMSIIGGGVIGLEIGSVFSKFGSD 4882 Query: 332 VTVMVRSVLLRGF-DQEMAEKVGSYLEQQGVKFQRKFTPILVQQLEKGLPGKLKVVAKST 390 VTV + L GF D ++++ + LE+ +KF F ++ + + A+ Sbjct: 4883 VTVYEYNSRLCGFLDPDVSKVLQKVLEKIKIKFM--FNTSIIGGNLNTTNNEAILYARDN 5056 Query: 391 EGPETVEGIYNTVLLAIGRDSCTRKIGLEKIGVKINEKNGKIPVNDVEQTNV---PHVYA 447 + + + + VL+ +GR + I LEK+ +++N KN KI V+ E NV P + A Sbjct: 5057 KTNQIKKVKSDIVLVCVGRKANLENINLEKLSIELN-KNKKIQVD--EYFNVKSQPTIKA 5227 Query: 448 IGDILDGKPELTPVAIQAGKLLARRLFG------VSLEKCDYINIPTTVFTPLEYGCCGL 501 IGD +DG L A + G ++A LF +Y IP+ ++T E G Sbjct: 5228 IGDAIDGS-MLAHKAEEEGYIVADMLFNELKNNKKKKNHINYDLIPSVIYTHPEVASVGY 5404 Query: 502 SEEKAIEMYKKENLEVYHTLFWPLEWTVAGR--DNNTCYAKIICNKFDNERVVGFHLLGP 559 +E+K E+ K N Y ++ +P R D+ K+I K D ++G ++G Sbjct: 5405 NEQKCKEL--KLN---YKSVSFPFAANSRSRTIDDYDGLIKLIVEK-DTNVILGSQIIGN 5566 Query: 560 NAGEITQGFAAAMKCGLTKQLLDDTIGIHPTCGEV 594 NA E+ + T + L I HPT EV Sbjct: 5567 NASELILPLSIYASHKGTSKNLSKIIYPHPTFSEV 5671 >Plasmodium_yoelii_yoelii_str._17XNL|MALPY00156|2002-09-10|ds- DNA|Plasmodium_yoelii_TIGR Length = 21720 Score = 47.4 bits (111), Expect = 2e-05, Method: Composition-based stats. Identities = 72/313 (23%), Positives = 120/313 (38%), Gaps = 42/313 (13%) Frame = -1 Query: 166 GTTWGLGGTCVNVGCIPKKLMHQAALLGHALQDAKK---YGWEYNQQVKH---------- 212 G LGGTCVNVGCIP K + A L++ K YG N + Sbjct: 20001 GNEESLGGTCVNVGCIPSKALLYATNKYRELKNISKLCNYGIYSNAYIDKEKDEIKSTQL 19822 Query: 213 -------NWEAMTEAIQSHIGSLNWGYRVTLRE-------KGVTYVNSFGEFVDLHKIKA 258 N + E Q+ I L G ++ + V + G ++ + I++ Sbjct: 19821 IADSICINTNKLKEYTQNVIKKLKSGITHGMKNTKFNKNPQSVQVIYDHGYIINKNTIQS 19642 Query: 259 TNKKGQETFYTASKFVIATGERPRY-LGIQGDKEYCITSDDLFSLPYCPGCTLVVGASYV 317 K + Y A ++ATG P I D + TSD +L ++G + Sbjct: 19641 ---KKNKQLYKAKNIILATGSIPNVPQNINVDHKTVFTSDQAINLQGLQNYISIIGMGII 19471 Query: 318 GLECAGFLAGLGLDVTVMVRSVLLRGF-DQEMAEKVGS-YLEQQGVKFQRKFTPILVQQL 375 GLE + LG ++T S F D ++A+ + +L+ + + + V Sbjct: 19470 GLEFSDIYTALGSEITFFEYSPEFLPFVDTDIAKYFENVFLKTKPINYFLNTEIKYVHPA 19291 Query: 376 EKGLPGKLKVVAKSTEGPETVEGI------------YNTVLLAIGRDSCTRKIGLEKIGV 423 G P + ++ P++ ++ L+A GR T IGLE + Sbjct: 19290 SNGKPVVIGYSLRTKTNPDSTASTTQINGEHVKELHVDSCLVATGRKPNTENIGLENLNA 19111 Query: 424 KINEKNGKIPVND 436 K+N+ G + V+D Sbjct: 19110 KMNK--GFVLVDD 19078 >Plasmodium_yoelii_yoelii_str._17XNL|MALPY02913|2002-09-10|ds- DNA|Plasmodium_yoelii_TIGR Length = 3288 Score = 45.8 bits (107), Expect = 6e-05, Method: Composition-based stats. Identities = 55/199 (27%), Positives = 84/199 (42%), Gaps = 6/199 (3%) Frame = +2 Query: 251 VDLHKIKATNKKGQETFYTASKFVIATGERPRYLGIQGDK-EYCITSDDLFSLPYCPGCT 309 +DL + T+ +G T Y K ++ATG RPR GD Y T DD F L Sbjct: 2105 LDLAEKSVTDDEG--TIYRFEKLLLATGGRPRRFPFGGDDILYFRTVDDYFRLRTLTETR 2278 Query: 310 ---LVVGASYVGLECAGFLAGLGLDVTVMVRSVLL--RGFDQEMAEKVGSYLEQQGVKFQ 364 ++G ++G E A LA +G DV ++ + R F + + Y QGV+ Sbjct: 2279 RKFAIIGGGFIGSEIAAALASIGKDVVMIFPEACIGARVFPGNLCRFLDGYYRDQGVELL 2458 Query: 365 RKFTPILVQQLEKGLPGKLKVVAKSTEGPETVEGIYNTVLLAIGRDSCTRKIGLEKIGVK 424 T + + GL +A G E + + + V+ IG + TR E G+ Sbjct: 2459 SGRTVTGLVREGDGLR-----LALGETGEEVL--VVDGVVAGIGIEPXTRLA--EAAGLP 2611 Query: 425 INEKNGKIPVNDVEQTNVP 443 + G I VND + +P Sbjct: 2612 V---EGGIVVNDFCRPGIP 2659 >Plasmodium_yoelii_yoelii_str._17XNL|MALPY02922|2002-09-10|ds- DNA|Plasmodium_yoelii_TIGR Length = 3310 Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats. Identities = 53/206 (25%), Positives = 88/206 (42%), Gaps = 15/206 (7%) Frame = +2 Query: 263 GQETFYTASKFVIATGERPRYLGIQGDKEY-------CITSDDLFSLPYCPGCTLVVGAS 315 G YT +IATG RYLG+ ++ Y C T D F Y V+G Sbjct: 2675 GDAGVYTCDALIIATGASARYLGLPSEEAYKGRGVSACATCDGFF---YKGKHVAVIGGG 2845 Query: 316 YVGLECAGFLAGLGLDVTVMVRSVLLRGFDQEMAEKVGSYLEQQGVKFQRKFTPILVQQL 375 +E A +L+ + VTV+ R R ++ +++K+ V + + +L + L Sbjct: 2846 NTAVEEALYLSNIAAKVTVVHRRDKFRS-EKILSDKLLERAANGNVSIE--WNSVLEEVL 3016 Query: 376 --EKGLPG-KLKVVAKSTEGPETVEGIYNTVLLAIGRDSCTRKIGLEKIGVKINEKNGKI 432 + G+ G +++ V T +EG++ +AIG T E ++ +NG I Sbjct: 3017 GDDMGVTGMRIRNVQDGTSKDIALEGVF----IAIGHSPNT-----EIFAGQLGMRNGYI 3169 Query: 433 PVNDVEQ-----TNVPHVYAIGDILD 453 V + T V V+A GD+ D Sbjct: 3170 VVKGGSEGGATATTVEGVFAAGDVSD 3247 >Plasmodium_yoelii_yoelii_str._17XNL|MALPY02825|2002-09-10|ds- DNA|Plasmodium_yoelii_TIGR Length = 3021 Score = 35.8 bits (81), Expect = 0.062, Method: Composition-based stats. Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 8/73 (10%) Frame = +2 Query: 58 FSSLGVVYNILELDQVDDGASV--------QEVLTEISNQKTVPNIFVNKVHVGGCDRTF 109 +S L + NIL+L++ + +V ++ L SN T P +++N VGG D+ Sbjct: 2648 YSKLAI--NILKLNKAKEIYTVNILNDDMLKQSLKIYSNWPTFPQLYINGKFVGGIDKIQ 2821 Query: 110 QAHQNGLLQKLLQ 122 + H N L+++LQ Sbjct: 2822 ELHDNKKLEEMLQ 2860 >Plasmodium_yoelii_yoelii_str._17XNL|MALPY01588|2002-09-10|ds- DNA|Plasmodium_yoelii_TIGR Length = 25526 Score = 34.3 bits (77), Expect = 0.20, Method: Composition-based stats. Identities = 15/44 (34%), Positives = 26/44 (59%) Frame = +2 Query: 79 VQEVLTEISNQKTVPNIFVNKVHVGGCDRTFQAHQNGLLQKLLQ 122 +++ L SN T P +++N VGG D+ + H N L+++LQ Sbjct: 14 LKQSLKIYSNWPTFPQLYINGKFVGGIDKIQELHDNKKLEEMLQ 145 >Plasmodium_yoelii_yoelii_str._17XNL|MALPY01678|2002-09-10|ds- DNA|Plasmodium_yoelii_TIGR Length = 7591 Score = 33.1 bits (74), Expect = 0.39, Method: Composition-based stats. Identities = 13/21 (61%), Positives = 16/21 (76%) Frame = +2 Query: 86 ISNQKTVPNIFVNKVHVGGCD 106 IS + +VP IF+NK VGGCD Sbjct: 4955 ISGKSSVPRIFINKEFVGGCD 5017 >Plasmodium_yoelii_yoelii_str._17XNL|MALPY01068|2002-09-10|ds- DNA|Plasmodium_yoelii_TIGR Length = 5415 Score = 30.4 bits (67), Expect = 2.8, Method: Composition-based stats. Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 2/79 (2%) Frame = +2 Query: 191 LLGHALQDAKKYGWEYNQQVKHNWEAM--TEAIQSHIGSLNWGYRVTLREKGVTYVNSFG 248 L+G ++ +G E NQ + +N ++ T I SH+G+ + L +G+ +N Sbjct: 2675 LMGSKGNNSYLFGNETNQNIMNNNTSLFSTGNIYSHLGNEQNNLQNILNREGINNINKLK 2854 Query: 249 EFVDLHKIKATNKKGQETF 267 E+ + KIK TN E + Sbjct: 2855 EYYENLKIK-TNVLNAEIY 2908 >Plasmodium_yoelii_yoelii_str._17XNL|MALPY00707|2002-09-10|ds- DNA|Plasmodium_yoelii_TIGR Length = 12029 Score = 29.3 bits (64), Expect = 5.6, Method: Composition-based stats. Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 3/51 (5%) Frame = +2 Query: 499 CGLSEEKAI---EMYKKENLEVYHTLFWPLEWTVAGRDNNTCYAKIICNKF 546 C + EKAI E+Y + N + Y+ ++ P ++ N+ C K CN+F Sbjct: 6701 CDKNLEKAIKFVEIYDELNEDYYNGIYSPYNQLLSTLSNDYCNLKNKCNQF 6853 >Plasmodium_yoelii_yoelii_str._17XNL|MALPY00157|2002-09-10|ds- DNA|Plasmodium_yoelii_TIGR Length = 15550 Score = 29.3 bits (64), Expect = 5.7, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 1/74 (1%) Frame = +2 Query: 202 YGWEYNQQVKHNWEAMTEAIQSHIGSLNWGYRVTLREKGVTYVNSFGEFVDLHK-IKATN 260 + ++ NQ KHN + + SH+ + N Y + + G +F+D K + N Sbjct: 14030 FSYQLNQSTKHNTTKIYDFYNSHVKN-NDKYEKFINDSG--RYTGLNDFIDKQKDLLNIN 14200 Query: 261 KKGQETFYTASKFV 274 K FY ASK + Sbjct: 14201 IKDLSKFYDASKLI 14242 >Plasmodium_yoelii_yoelii_str._17XNL|MALPY00865|2002-09-10|ds- DNA|Plasmodium_yoelii_TIGR Length = 10398 Score = 29.3 bits (64), Expect = 5.7, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 1/74 (1%) Frame = +3 Query: 202 YGWEYNQQVKHNWEAMTEAIQSHIGSLNWGYRVTLREKGVTYVNSFGEFVDLHK-IKATN 260 + ++ NQ KHN + + SH+ + N Y + + G +F+D K + N Sbjct: 855 FSYQLNQSTKHNTTKIYDFYNSHVKN-NDKYEKFINDSG--RYTGLNDFIDKQKDLLNIN 1025 Query: 261 KKGQETFYTASKFV 274 K FY ASK + Sbjct: 1026IKDLSKFYDASKLI 1067 TBLASTN 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= SPP00000063_1.0 # Protein # Thioredoxin reductase 1 (TR1) # Caenorhabditis elegans # Complete (667 letters) Database: genome.fa 2960 sequences; 20,171,213 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Plasmodium_yoelii_yoelii_str._17XNL|MALPY00659|2002-09-10|ds-DNA... 417 e-117 Plasmodium_yoelii_yoelii_str._17XNL|MALPY00317|2002-09-10|ds-DNA... 126 3e-29 Plasmodium_yoelii_yoelii_str._17XNL|MALPY01482|2002-09-10|ds-DNA... 101 1e-21 Plasmodium_yoelii_yoelii_str._17XNL|MALPY00156|2002-09-10|ds-DNA... 48 2e-05 Plasmodium_yoelii_yoelii_str._17XNL|MALPY01746|2002-09-10|ds-DNA... 41 0.002 Plasmodium_yoelii_yoelii_str._17XNL|MALPY00318|2002-09-10|ds-DNA... 30 2.8 >Plasmodium_yoelii_yoelii_str._17XNL|MALPY00659|2002-09-10|ds- DNA|Plasmodium_yoelii_TIGR Length = 14426 Score = 417 bits (1073), Expect = e-117, Method: Composition-based stats. Identities = 225/505 (44%), Positives = 306/505 (60%), Gaps = 18/505 (3%) Frame = -2 Query: 170 DHTYDLIVIGGGSGGLAAAKEASRLGKKVACLDFVKPSPQGTSWGLGGTCVNVGCIPKKL 229 ++ YD IVIGGG GG+A+AKEA+ G KV DFVKPS QGT WG+GGTCVNVGC+PKKL Sbjct: 13339 NYDYDYIVIGGGPGGMASAKEAASHGAKVLLFDFVKPSSQGTKWGIGGTCVNVGCVPKKL 13160 Query: 230 MHQASLLGHSIH-DAKKYGWKLPEGKVEHQWNHLRDSVQDHIASLNWGYRVQLREKTVTY 288 MH A +G D+ KYGW+ ++H WN L +VQ HI SLN+ Y V L+ V Y Sbjct: 13159 MHYAGNMGTLFKSDSDKYGWEC--DNLKHDWNKLVSTVQSHIRSLNFSYMVGLKSSKVKY 12986 Query: 289 INSYGEFTGPFEISATNK--KKKVEKLTADRFLISTGLRPKYPE-IPGVKEYTITSDDLF 345 IN + +S K K + +T LI+TG RP P+ + G KE +ITSDD+F Sbjct: 12985 INGLAKLKDKNTVSYYLKGDTSKEDCVTGKYILIATGCRPNIPDDVIGAKELSITSDDIF 12806 Query: 346 QLPYSPGKTLCVGASYVSLECAGFLHGFGFDVTVMVRSILLRGFDQDMAERIRKHMIAYG 405 L +PGKTL VGASYV+LECAGFL+ G D T+ VRSI+LRGFDQ A +I+ +M G Sbjct: 12805 SLKKNPGKTLVVGASYVALECAGFLNSLGCDTTISVRSIILRGFDQQCANKIKLYMEEQG 12626 Query: 406 MKFEAGVPTRIEQIDEKTDEKAGKYRVFWPKKNEETGEMQEVSEEYNTILMAIGREAVTD 465 + F GV + +K ++ K V + N T E+ ++T+L AIGR+ D Sbjct: 12625 VTFMCGV------LPKKLTKENDKILVHF---NNNTTEL------FDTVLYAIGRKGDID 12491 Query: 466 DVGLTTIGVERAKSKKVLGRREQS-TTIPWVYAIGDVLEGTPELTPVAIQAGRVLMRRIF 524 + L + + + + + S T IP ++A+GD+ E PEL PVAI+AG +L RR+F Sbjct: 12490 GLNLEKLNININNNNNKIITDKFSCTNIPNIFAVGDIAENVPELAPVAIKAGEILARRLF 12311 Query: 525 DGANELTEYDQIPTTVFTPLEYGCCGLSEEDAMMKYGKDNIIIYHNVFNPLEYTISER-- 582 +NE+ +Y+ IPT+++TP+EYG CG SEE A ++GK+NI I+ FN LE + R Sbjct: 12310 KNSNEIMKYNLIPTSIYTPIEYGSCGYSEEQAYEQFGKNNIEIFLQEFNNLEISAVHRTK 12131 Query: 583 ---MDKDH--------CYLKMICLRNEEEKVVGFHILTPNAGEVTQGFGIXXXXXXXXXD 631 + KD C K++CL+NE+ +V+GFH + PNAGEVTQG + D Sbjct: 12130 HLKVQKDEYDVDISSTCLSKLVCLKNEDNRVIGFHYVGPNAGEVTQGMALALKLNAKKSD 11951 Query: 632 FDRLIGIHPTVAENFTTLTLEKKEG 656 FD IGIHPT AE+F L++ G Sbjct: 11950 FDNCIGIHPTDAESFMNLSITLSSG 11876 >Plasmodium_yoelii_yoelii_str._17XNL|MALPY00317|2002-09-10|ds- DNA|Plasmodium_yoelii_TIGR Length = 33648 Score = 126 bits (317), Expect = 3e-29, Method: Composition-based stats. Identities = 102/364 (28%), Positives = 164/364 (45%), Gaps = 40/364 (10%) Frame = +3 Query: 326 PKYPEIPGVKEYTITSDDLFQLPYSPGKTLCVGASYVSLECAGFLHGFGFDVTVMVRSI- 384 P +P + GV E+TI+SD+ F + + + +G Y+++E + G + + R Sbjct: 24828 PVFPTVKGV-EHTISSDEFFDIKEAK-RIGIIGGGYIAVELINVIKRLGIESYIFARGKR 25001 Query: 385 LLRGFDQDMAERIRKHMIAYGMKFEAGVPTRIEQIDEKTDEKAGKY----RVFWPKKNEE 440 LLR FD+ + + M + +E+I++ D+ Y R F Sbjct: 25002 LLRKFDESIVNELENDMKKNNINIIT--MANVEEIEKVHDKNLTIYLNDGRKF------- 25154 Query: 441 TGEMQEVSEEYNTILMAIGREAVTDDVGLTTIGVERAKSKKVLGRREQSTTIPWVYAIGD 500 E + ++ +GR T ++ L + + K+ ++ Q T + ++A+GD Sbjct: 25155 --------EHLDYVIYCVGRSPNTKNLNLEKLNIT-TKNDYIIVDDNQRTNLKNIFAVGD 25307 Query: 501 ---VLEGTP------------------------------ELTPVAIQAGRVLMRRIFDGA 527 V +G +LTPVAI AGR+L RIF Sbjct: 25308 CCMVKKGKELEDLNLLKLYDEQIYINNKKNDTEDSFYNVQLTPVAINAGRLLADRIFLNK 25487 Query: 528 NELTEYDQIPTTVFTPLEYGCCGLSEEDAMMKYGKDNIIIYHNVFNPLEYTIS--ERMDK 585 T Y IPT +F+ G GLSEE+A+ YGK+N+ IY + F L +++ E K Sbjct: 25488 TRKTNYSLIPTVIFSHPPIGTIGLSEEEAINIYGKENVKIYESKFTNLFFSVYDIEPSQK 25667 Query: 586 DHCYLKMICLRNEEEKVVGFHILTPNAGEVTQGFGIXXXXXXXXXDFDRLIGIHPTVAEN 645 + Y+K++C+ +EE + G HI+ NA E+ QGF + DFD I IHPT AE Sbjct: 25668 EKTYIKLVCV-GKEELIKGLHIIGLNADEIIQGFAVALKMNATKKDFDETIPIHPTAAEE 25844 Query: 646 FTTL 649 TL Sbjct: 25845 LVTL 25856 Score = 32.0 bits (71), Expect = 0.89, Method: Composition-based stats. Identities = 11/12 (91%), Positives = 12/12 (100%) Frame = +2 Query: 215 LGGTCVNVGCIP 226 LGGTCVNVGC+P Sbjct: 24356 LGGTCVNVGCVP 24391 >Plasmodium_yoelii_yoelii_str._17XNL|MALPY01482|2002-09-10|ds- DNA|Plasmodium_yoelii_TIGR Length = 7932 Score = 101 bits (251), Expect = 1e-21, Method: Composition-based stats. Identities = 113/470 (24%), Positives = 201/470 (42%), Gaps = 32/470 (6%) Frame = +2 Query: 215 LGGTCVNVGCIPKK-LMHQASLLGHSIHDAKKYGWKLPEGKVEHQWNHLRDSVQDHIASL 273 LGGTC+N GCIP K L+H A S + K+ G + K++ + H + + +L Sbjct: 4346 LGGTCLNRGCIPSKSLLHIAHNYYESKNKFKECGILIDNVKLDIEQVHKHKN--KCMGNL 4519 Query: 274 NWGYRVQLREKTVTYINSYGEFTGPFEISATNKKKKVEKLTADRFLISTGLRPKYPEIP- 332 G ++ V +I G I + + +K TA+R +I+TG +P EIP Sbjct: 4520 ADGISFLYKKNNVKHIIGRGSIIDGNTILVETENEGQKKYTAERIVIATGSKPI--EIPL 4693 Query: 333 ---------------GVKEY----TITSDDLFQLPYSPGKTLCVGASYVSLECAGFLHGF 373 + EY TSDD+ P +G + LE F Sbjct: 4694 KKLDDNNINDVENVKDILEYDHKLIQTSDDILNFKEIPKTMSIIGGGVIGLEIGSVFSKF 4873 Query: 374 GFDVTVMVRSILLRGF-DQDMAERIRKHMIAYGMKFEAGVPTRIEQIDEKTDEKAGKYRV 432 G DVTV + L GF D D+++ ++K + +KF ++ +E + Sbjct: 4874 GSDVTVYEYNSRLCGFLDPDVSKVLQKVLEKIKIKFMFNTSIIGGNLNTTNNEA-----I 5038 Query: 433 FWPKKNEETGEMQEVSEEYNTILMAIGREAVTDDVGLTTIGVERAKSKKV-LGRREQSTT 491 + + N +T ++++V + +L+ +GR+A +++ L + +E K+KK+ + + Sbjct: 5039 LYARDN-KTNQIKKVKSD--IVLVCVGRKANLENINLEKLSIELNKNKKIQVDEYFNVKS 5209 Query: 492 IPWVYAIGDVLEGTPELTPVAIQAGRVLMRRIFDGANELT---------EYDQIPTTVFT 542 P + AIGD ++G+ L A + G ++ +F NEL YD IP+ ++T Sbjct: 5210 QPTIKAIGDAIDGS-MLAHKAEEEGYIVADMLF---NELKNNKKKKNHINYDLIPSVIYT 5377 Query: 543 PLEYGCCGLSEEDAMMKYGKDNIIIYHNVFNPLEYTISERMDKDHCYLKMICLRNEEEKV 602 E G +E+ K+ + Y +V P R D+ L + + + + Sbjct: 5378 HPEVASVGYNEQKC-----KELKLNYKSVSFPFAANSRSRTIDDYDGLIKLIVEKDTNVI 5542 Query: 603 VGFHILTPNAGEVTQGFGIXXXXXXXXXDFDRLIGIHPTVAENFTTLTLE 652 +G I+ NA E+ I + ++I HPT +E + L+ Sbjct: 5543 LGSQIIGNNASELILPLSIYASHKGTSKNLSKIIYPHPTFSEVIKEVALQ 5692 >Plasmodium_yoelii_yoelii_str._17XNL|MALPY00156|2002-09-10|ds- DNA|Plasmodium_yoelii_TIGR Length = 21720 Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats. Identities = 83/363 (22%), Positives = 138/363 (38%), Gaps = 41/363 (11%) Frame = -1 Query: 157 KALKQDYLKEWLRDHTYDLIVIGGGSGGLAAAKEASRLGKKVACLDFVKPSPQGTSWGLG 216 K+ D K + YD+ ++G G GG AAA A KV G LG Sbjct: 20139 KSENNDTSKMEIYPDQYDVAILGCGVGGHAAAINAIEKNLKVIIF-------AGNEESLG 19981 Query: 217 GTCVNVGCIPKKLMHQASLLGHSIHDAKK---YG----------------WKLPEGKVEH 257 GTCVNVGCIP K + A+ + + K YG +L + Sbjct: 19980 GTCVNVGCIPSKALLYATNKYRELKNISKLCNYGIYSNAYIDKEKDEIKSTQLIADSICI 19801 Query: 258 QWNHLRDSVQDHIASLNWGYRVQLRE-------KTVTYINSYGEFTGPFEISATNKKKKV 310 N L++ Q+ I L G ++ ++V I +G I + KK Sbjct: 19800 NTNKLKEYTQNVIKKLKSGITHGMKNTKFNKNPQSVQVIYDHGYIINKNTIQS---KKNK 19630 Query: 311 EKLTADRFLISTGLRPKYPEIPGVKEYTI-TSDDLFQLPYSPGKTLCVGASYVSLECAGF 369 + A +++TG P P+ V T+ TSD L +G + LE + Sbjct: 19629 QLYKAKNIILATGSIPNVPQNINVDHKTVFTSDQAINLQGLQNYISIIGMGIIGLEFSDI 19450 Query: 370 LHGFGFDVTVMVRSILLRGF-DQDMAER-----IRKHMIAYGMKFEAGVPTRIEQIDEKT 423 G ++T S F D D+A+ ++ I Y + T I+ + + Sbjct: 19449 YTALGSEITFFEYSPEFLPFVDTDIAKYFENVFLKTKPINYFLN------TEIKYVHPAS 19288 Query: 424 DEK--AGKYRVFWPKKNEETGEMQEVSEEY------NTILMAIGREAVTDDVGLTTIGVE 475 + K Y + + T +++ E+ ++ L+A GR+ T+++GL + + Sbjct: 19287 NGKPVVIGYSLRTKTNPDSTASTTQINGEHVKELHVDSCLVATGRKPNTENIGLENLNAK 19108 Query: 476 RAK 478 K Sbjct: 19107 MNK 19099 >Plasmodium_yoelii_yoelii_str._17XNL|MALPY01746|2002-09-10|ds- DNA|Plasmodium_yoelii_TIGR Length = 18506 Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats. Identities = 20/54 (37%), Positives = 29/54 (53%) Frame = -3 Query: 170 DHTYDLIVIGGGSGGLAAAKEASRLGKKVACLDFVKPSPQGTSWGLGGTCVNVG 223 DH YD +++G G GL +A E S+ KVAC+ + P+ T GG +G Sbjct: 4482 DHHYDAVIVGAGGAGLRSALELSKNKYKVACISKLFPTRSHTVAAQGGINAALG 4321 >Plasmodium_yoelii_yoelii_str._17XNL|MALPY00318|2002-09-10|ds- DNA|Plasmodium_yoelii_TIGR Length = 20734 Score = 30.4 bits (67), Expect = 2.8, Method: Composition-based stats. Identities = 15/38 (39%), Positives = 22/38 (57%) Frame = -2 Query: 170 DHTYDLIVIGGGSGGLAAAKEASRLGKKVACLDFVKPS 207 + YD+IVIGGG G A+ +++LG K + K S Sbjct: 17739 EKKYDVIVIGGGHSGCEASYISAKLGAKTLLITQCKES 17626 Database: genome.fa Posted date: Mar 4, 2008 11:17 AM Number of letters in database: 20,171,213 Number of sequences in database: 2960 Lambda K H 0.319 0.138 0.418 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2960 Number of Hits to DB: 72,379,985 Number of extensions: 944354 Number of successful extensions: 3066 Number of sequences better than 10.0: 19 Number of HSP's gapped: 3007 Number of HSP's successfully gapped: 71 Length of database: 6,723,737 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 46 (22.3 bits)