TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000037_1.0 # Protein # SECIS binding protein 2 (SBP2) #
Homo sapiens # Complete
         (854 letters)

Database: yoelii.fasta 
           2960 sequences; 20,171,213 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Plasmodium_yoelii_yoelii_str._17XNL|MALPY00816|2002-09-10|ds-DNA...    44   4e-04
Plasmodium_yoelii_yoelii_str._17XNL|MALPY02899|2002-09-10|ds-DNA...    30   7.1  

>Plasmodium_yoelii_yoelii_str._17XNL|MALPY00816|2002-09-10|ds-
            DNA|Plasmodium_yoelii_TIGR
          Length = 8272

 Score = 43.5 bits (101), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 53/110 (48%)
 Frame = +3

Query: 631  DYCSQMLSKEVDACVTDLLKELVRFQDRMYQKDPVKAKTKRRLVLGLREVXXXXXXXXXX 690
            DY    +++E++  V D LK++ +  D++      +         G++E           
Sbjct: 1044 DYVDHKITEELNNMVKDFLKKISKSHDKLLLLKKKRRYYL-----GMKECYKHICINEPK 1208

Query: 691  CVIISPNCEKIQSKGGLDDTLHTIIDYACEQNIPFVFALNRKALGRSLNK 740
             V+++PN E   +    DD ++ I+    E+NIP VFAL++  LG+ + K
Sbjct: 1209 LVLVAPNIEPTLNNV-FDDMINKIVCKCKEKNIPLVFALSKNILGKCIGK 1355


>Plasmodium_yoelii_yoelii_str._17XNL|MALPY02899|2002-09-10|ds-
            DNA|Plasmodium_yoelii_TIGR
          Length = 2131

 Score = 29.6 bits (65), Expect = 7.1,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 24/51 (47%)
 Frame = +3

Query: 772  AYKTMLENVQQELVGEPRPQAPPSLPTQGPSCPAEDGPPALKEKEEPHYIE 822
            A+  +  ++ Q L G   PQ        G   PAED PP L+  E PH I+
Sbjct: 1356 AFGCLFPDLAQRLDG--LPQGELLTVASGDEPPAEDLPPRLQPPEHPHQIQ 1502


  Database: yoelii.fasta
    Posted date:  Mar 5, 2008 11:48 AM
  Number of letters in database: 20,171,213
  Number of sequences in database:  2960
  
Lambda     K      H
   0.311    0.128    0.365 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2960
Number of Hits to DB: 12,905,320
Number of extensions: 157086
Number of successful extensions: 488
Number of sequences better than 10.0: 4
Number of HSP's gapped: 485
Number of HSP's successfully gapped: 4
Length of query: 854
Length of database: 6,723,737
Length adjustment: 105
Effective length of query: 749
Effective length of database: 6,412,937
Effective search space: 4803289813
Effective search space used: 4803289813
Neighboring words threshold: 13
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 47 (22.7 bits)