TBLASTN 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|23510674|emb|CAD49059.1| selenocysteine-specific elongation factor selB homologue, putative [Plasmodium falciparum 3D7] (934 letters) Database: yoelii.fasta 2960 sequences; 20,171,213 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Plasmodium_yoelii_yoelii_str._17XNL|MALPY00118|2002-09-10|ds-DNA... 193 3e-49 Plasmodium_yoelii_yoelii_str._17XNL|MALPY02052|2002-09-10|ds-DNA... 41 0.003 Plasmodium_yoelii_yoelii_str._17XNL|MALPY01697|2002-09-10|ds-DNA... 39 0.012 Plasmodium_yoelii_yoelii_str._17XNL|MALPY01212|2002-09-10|ds-DNA... 39 0.014 Plasmodium_yoelii_yoelii_str._17XNL|MALPY01914|2002-09-10|ds-DNA... 31 2.5 Plasmodium_yoelii_yoelii_str._17XNL|MALPY01580|2002-09-10|ds-DNA... 31 3.4 Plasmodium_yoelii_yoelii_str._17XNL|MALPY02075|2002-09-10|ds-DNA... 30 4.5 Plasmodium_yoelii_yoelii_str._17XNL|MALPY00260|2002-09-10|ds-DNA... 29 8.9 >Plasmodium_yoelii_yoelii_str._17XNL|MALPY00118|2002-09-10|ds- DNA|Plasmodium_yoelii_TIGR Length = 18636 Score = 193 bits (491), Expect = 3e-49, Method: Composition-based stats. Identities = 125/254 (49%), Positives = 162/254 (63%), Gaps = 6/254 (2%) Frame = -2 Query: 1 MININVGVLGHVDSGKTSLCKCLSQVLSTCALDKHKESKERGITIDLGFSSFYIXXXXXX 60 MIN+N+GVLGHVDSGKTSLC+CLS+VLSTCALDKH++S+E+GITIDLGFSSFYI Sbjct: 10190 MINVNIGVLGHVDSGKTSLCRCLSEVLSTCALDKHRQSQEKGITIDLGFSSFYIKKKKSQ 10011 Query: 61 XYDV------NQKREIQTNLLNDQTTDQKESFLYCKREEKNDLHNIQYDKTNIEYNEEQN 114 NQ EIQ N + + K + + + K + N + NI+ ++N Sbjct: 10010 TSTSQTTTSQNQHGEIQNNKIVPKHGPNKNECIPDQNDVKKEDINNDCEIENIQNISDEN 9831 Query: 115 CYDYTNDKHHSNNIYFYDEEIIQICLVDCPGHHSLLKSIIMGSEXXXXXXXXXXXXXXXQ 174 E+IQICLVDCPGHHSL+K I+MG++ Q Sbjct: 9830 -------------------ELIQICLVDCPGHHSLIKCIVMGAKIMDMIFLVIDINKGIQ 9708 Query: 175 KQTIECLVLCKIINCDIIIVLNKIDLIPLHLREKKINLMKKKIQEAFYKFKSLQSLNYHI 234 KQTIECLVLC+ + DIII+LNKIDLIPLH REKKIN MKKKI++A + SL+ L+Y+I Sbjct: 9707 KQTIECLVLCQFVKSDIIIILNKIDLIPLHEREKKINTMKKKIKDAINR-TSLKKLSYYI 9531 Query: 235 VSISANVKGKDNKD 248 VS+SAN K +++ + Sbjct: 9530 VSLSANKKNQNDNE 9489 Score = 171 bits (432), Expect = 2e-42, Method: Composition-based stats. Identities = 95/170 (55%), Positives = 122/170 (71%), Gaps = 1/170 (0%) Frame = -2 Query: 391 NIKEIINVLTNIIKIPEREIS-TYEDFYFLYDHSFNIKGKGTIFTGTVIKGKIKINCNVT 449 NI E+I +L ++IKIP RE + ++EDFYFLYDHSF IKGKG ++TGTVIKGKI IN N++ Sbjct: 9377 NINELIELLKSVIKIPVRETNPSFEDFYFLYDHSFEIKGKGMVYTGTVIKGKITINSNIS 9198 Query: 450 ILPLNETGKIKEIQSFKKNVHEGKKGSRLSXXXXXXXXXXXXXXERGVIIYENSNISYFS 509 ILPLN GKIK+IQSFKK EG G+RLS ERG+I++E SNI F+ Sbjct: 9197 ILPLNIKGKIKDIQSFKKKQKEGTSGNRLSFLISHDNIKNLKKVERGIIVHEKSNICNFT 9018 Query: 510 MFICKVKQVEFYKKDLNNLEHFICIIGFSSTECYGYFFKKIKNKYETNES 559 +FICK+K +EFYKK + N E CIIGF+S+ YG+FFKK+K E ++ Sbjct: 9017 VFICKIKLIEFYKKSIKNKELLTCIIGFASSHSYGFFFKKLKTDPEKEQT 8868 Score = 123 bits (308), Expect = 4e-28, Method: Composition-based stats. Identities = 75/191 (39%), Positives = 110/191 (57%), Gaps = 2/191 (1%) Frame = -2 Query: 746 DDDIYFLVVMKRKIHCFENEKCIFLKNDEHTNCRICLYGEIIEIIDNNCTYKK--DDSFV 803 D++IYFLV++K+K++ F EKCIFLKNDE+ NCRICL+G I++II ++ + + +FV Sbjct: 8588 DEEIYFLVILKKKMYGFNGEKCIFLKNDENINCRICLHGNIVDIIKDSAINSQINNSTFV 8409 Query: 804 FNKQPNIYKYEEYXXXXXXXXXXXXXXXXXXXXXHTIICKKLFQSSNQVIPXXXXXXXXX 863 NK+P + ++E+Y T++CK +F SSNQV Sbjct: 8408 MNKKPCLNEHEDYKNLKIMKEKEKIGLIEKVIDNTTLLCKNVFTSSNQV------TAYLT 8247 Query: 864 XSTYDQKXXXXXXXXXXXVLHTGTIIKPFAKQGKAIVSFDEDISYLKNDIKSYNFLLVYY 923 Y G I K FAK GK IV FD+DIS++K++IKSY ++ YY Sbjct: 8246 QKIYLIPLEHQKNKNVCKTATIGYIAKSFAKNGKFIVHFDDDISHIKDNIKSYIIMIKYY 8067 Query: 924 KDVFSKKKVFL 934 KD+F+KKK+F+ Sbjct: 8066 KDIFTKKKIFM 8034 >Plasmodium_yoelii_yoelii_str._17XNL|MALPY02052|2002-09-10|ds- DNA|Plasmodium_yoelii_TIGR Length = 5837 Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats. Identities = 37/137 (27%), Positives = 62/137 (45%), Gaps = 3/137 (2%) Frame = +2 Query: 378 KSSSDIPFMNKTINIKEIINVLTNIIKIPEREISTYEDFYFLYDHSFNIKGKGTIFTGTV 437 K+ +D P +I ++++ N I P+R+I F D I GKGT+ TG V Sbjct: 1592 KALNDDPSEYGVPSILKLLDACDNYIDEPKRKIDL--PFLMSIDDVLQISGKGTVATGRV 1765 Query: 438 IKGKIKINCNVTILPLNETG---KIKEIQSFKKNVHEGKKGSRLSXXXXXXXXXXXXXXE 494 +G IKIN +V IL + E I I+ F+K + + G ++ Sbjct: 1766 EQGTIKINESVDILGIKEKSIKTVITGIEMFRKTLDTAQAGDQIG---VMLKNVKKNDIS 1936 Query: 495 RGVIIYENSNISYFSMF 511 RG+++ + N+ + F Sbjct: 1937 RGMVVTKIPNMKTYKKF 1987 Score = 35.4 bits (80), Expect = 0.13, Method: Composition-based stats. Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 9/53 (16%) Frame = +2 Query: 3 NINVGVLGHVDSGKTSLCKCLSQVLSTC---------ALDKHKESKERGITID 46 ++N+G +GHVD GKT+L +++V S +DK E ++RGITI+ Sbjct: 1097 HMNIGTIGHVDHGKTTLTAAITKVCSKYDRGTFKSYEDIDKTPEEQKRGITIN 1255 >Plasmodium_yoelii_yoelii_str._17XNL|MALPY01697|2002-09-10|ds- DNA|Plasmodium_yoelii_TIGR Length = 3439 Score = 38.9 bits (89), Expect = 0.012, Method: Composition-based stats. Identities = 59/238 (24%), Positives = 89/238 (37%), Gaps = 1/238 (0%) Frame = -2 Query: 3 NINVGVLGHVDSGKTSLCKCLSQVLSTCALDKHKESKERGITIDLGFSSFYIXXXXXXXY 62 +IN+G +GHVD GKT+L +S Sbjct: 3024 HINLGTIGHVDHGKTTLTTAISY------------------------------------- 2956 Query: 63 DVNQKREIQTNLLNDQTTDQKESFLYCKREEKNDLHNIQYDKTNIEYNEEQNCYDYTNDK 122 LLN Q +K S+ + + I + T+IEY T K Sbjct: 2955 -----------LLNLQGLSKKYSYSDIDSSPEEKIRGITINTTHIEYE--------TLTK 2833 Query: 123 HHSNNIYFYDEEIIQICLVDCPGHHSLLKSIIMGSEXXXXXXXXXXXXXXXQKQTIECLV 182 H ++ +DCPGH +K++I+G+ QT E L+ Sbjct: 2832 HCAH--------------IDCPGHSDYIKNMIIGATQMDIAILVISIIDGIMPQTYEHLL 2695 Query: 183 LCKIINC-DIIIVLNKIDLIPLHLREKKINLMKKKIQEAFYKFKSLQSLNYHIVSISA 239 L K I ++II LNK DL E+ I+ +K +I E K+ + N HI++ SA Sbjct: 2694 LIKQIGIKNLIIFLNKEDLCN---DEELIDFIKLEINELLTKY-NFDLNNIHILTGSA 2533 >Plasmodium_yoelii_yoelii_str._17XNL|MALPY01212|2002-09-10|ds- DNA|Plasmodium_yoelii_TIGR Length = 22131 Score = 38.5 bits (88), Expect = 0.014, Method: Composition-based stats. Identities = 20/48 (41%), Positives = 30/48 (62%) Frame = +2 Query: 4 INVGVLGHVDSGKTSLCKCLSQVLSTCALDKHKESKERGITIDLGFSS 51 IN+G +GHV GK++L +S V + + K KER ITI LG+++ Sbjct: 1154 INLGTIGHVAHGKSTLVHAISGVHTV----RFKHEKERNITIKLGYAN 1285 Score = 29.3 bits (64), Expect = 8.2, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 2/67 (2%) Frame = +2 Query: 137 QICLVDCPGHHSLLKSIIMGSEXXXXXXXXXXXXXX-XQKQTIECLVLCKIINCDIIIVL 195 + VDCPGH L+ +++ G+ Q QT E L +I+ I++L Sbjct: 1415 HVSFVDCPGHDILMATMLNGAAVMDAALLLVAGNESCPQPQTSEHLAAVEIMRLKHILIL 1594 Query: 196 -NKIDLI 201 NK++LI Sbjct: 1595 QNKVELI 1615 >Plasmodium_yoelii_yoelii_str._17XNL|MALPY01914|2002-09-10|ds- DNA|Plasmodium_yoelii_TIGR Length = 5476 Score = 31.2 bits (69), Expect = 2.5, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 27/62 (43%) Frame = -2 Query: 138 ICLVDCPGHHSLLKSIIMGSEXXXXXXXXXXXXXXXQKQTIECLVLCKIINCDIIIVLNK 197 I ++D PGH S GS ++QT E + + K NC +I LNK Sbjct: 3156 IMIIDTPGHESFYNLRKRGSSLCDIAILVIDLMHGLEQQTKESIQILKQRNCPFVIALNK 2977 Query: 198 ID 199 ID Sbjct: 2976 ID 2971 >Plasmodium_yoelii_yoelii_str._17XNL|MALPY01580|2002-09-10|ds- DNA|Plasmodium_yoelii_TIGR Length = 5037 Score = 30.8 bits (68), Expect = 3.4, Method: Composition-based stats. Identities = 35/138 (25%), Positives = 60/138 (43%), Gaps = 3/138 (2%) Frame = -1 Query: 281 DDKKDPPILLNDDKKDPPNLLNDDKKDPPNLLNDDKKDPPNLLNDDKKDPSILLSDDKKD 340 D+K + D+K N+ D+K N+ D+K N+ D+K + D+K Sbjct: 2427 DEKNTKENIDGDEKNTKENIDGDEKNTKENIDGDEKNTKENIDGDEKNTKENIDGDEKNT 2248 Query: 341 PPNLLNDDKKDPPNLLNDDKKDPSILLNDHMN---EWSQNKSSSDIPFMNKTINIKEIIN 397 N+ D+K N+ D+K S+ + + N + S + S DI ++ N K+ Sbjct: 2247 KENIDEDEKNTKENIDEDEKNTNSLKIKNSKNLIFDLSLSDSEHDILLVDTRSNKKKD-- 2074 Query: 398 VLTNIIKIPEREISTYED 415 N +I E IS +D Sbjct: 2073 --QNFYEIKETNISISDD 2026 >Plasmodium_yoelii_yoelii_str._17XNL|MALPY02075|2002-09-10|ds- DNA|Plasmodium_yoelii_TIGR Length = 11059 Score = 30.4 bits (67), Expect = 4.5, Method: Composition-based stats. Identities = 15/36 (41%), Positives = 22/36 (61%) Frame = +1 Query: 633 EHSDDIIKNEHGEDINKNEHSDDNNKNEHGDDNNKN 668 ++S D I NEH ++ NEH+D+ NEH D+ N Sbjct: 1486 DNSYDKINNEHVDNKKNNEHADNKKNNEHVDNKKNN 1593 >Plasmodium_yoelii_yoelii_str._17XNL|MALPY00260|2002-09-10|ds- DNA|Plasmodium_yoelii_TIGR Length = 15631 Score = 29.3 bits (64), Expect = 8.9, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 11/60 (18%) Frame = -1 Query: 4 INVGVLGHVDSGKTSLCKCLSQVLS-----------TCALDKHKESKERGITIDLGFSSF 52 +N+G+L H+D+GKT++ + + + LD K+ +ERGITI +S F Sbjct: 1420 VNLGILAHIDAGKTTISEDILYNSNEIRVKGNINDQNTQLDFLKQERERGITIKTAYSCF 1241 Database: yoelii.fasta Posted date: Feb 28, 2008 2:53 PM Number of letters in database: 20,171,213 Number of sequences in database: 2960 Lambda K H 0.316 0.137 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2960 Number of Hits to DB: 27,459,909 Number of extensions: 632715 Number of successful extensions: 9496 Number of sequences better than 10.0: 290 Number of HSP's gapped: 8627 Number of HSP's successfully gapped: 468 Length of query: 934 Length of database: 6,723,737 Length adjustment: 106 Effective length of query: 828 Effective length of database: 6,409,977 Effective search space: 5307460956 Effective search space used: 5307460956 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 48 (23.1 bits)