TBLASTN 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= SPP00000001_1.0 # Protein # Iodothyronine deiodinase 1 (DI1) # Homo sapiens # Complete (249 letters) Database: yoelii.fasta 2960 sequences; 20,171,213 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Plasmodium_yoelii_yoelii_str._17XNL|MALPY00245|2002-09-10|ds-DNA... 29 1.7 Plasmodium_yoelii_yoelii_str._17XNL|MALPY02658|2002-09-10|ds-DNA... 29 1.7 >Plasmodium_yoelii_yoelii_str._17XNL|MALPY00245|2002-09-10|ds- DNA|Plasmodium_yoelii_TIGR Length = 7856 Score = 29.3 bits (64), Expect = 1.7, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 52/105 (49%), Gaps = 2/105 (1%) Frame = -2 Query: 102 GQRCNIWEFMQGNRPLVLNFGSCTUPSFMFKFDQFKRLI--EDFSSIADFLVIYIEEAHA 159 G+R + +E ++ N L + + + ++D + + ED SI +F++IY+++ Sbjct: 5731 GKRLDFYENIEDN--LNDSMENDDFSQLLKEYDNLYKFMVKEDPDSIPNFVIIYLDKLTK 5558 Query: 160 SDGWAFKNNMDIRNHQNLQDRLQAAHLLLARSPQCPVVVDTMQNQ 204 F+NN++ +N +++ Q + L A+ +C + NQ Sbjct: 5557 YVDTTFQNNVEKKNLS--KNKAQTLNKLRAKIRKCSELYQNKLNQ 5429 >Plasmodium_yoelii_yoelii_str._17XNL|MALPY02658|2002-09-10|ds- DNA|Plasmodium_yoelii_TIGR Length = 4118 Score = 29.3 bits (64), Expect = 1.7, Method: Composition-based stats. Identities = 9/11 (81%), Positives = 11/11 (100%) Frame = -1 Query: 61 WIPTFFSTQYF 71 W+PT+FSTQYF Sbjct: 3707 WLPTYFSTQYF 3675 TBLASTN 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= SPP00000002_1.0 # Protein # Iodothyronine deiodinase 2 (DI2) # Homo sapiens # Complete (265 letters) Database: yoelii.fasta 2960 sequences; 20,171,213 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Plasmodium_yoelii_yoelii_str._17XNL|MALPY00385|2002-09-10|ds-DNA... 28 3.0 Plasmodium_yoelii_yoelii_str._17XNL|MALPY00157|2002-09-10|ds-DNA... 28 3.8 Plasmodium_yoelii_yoelii_str._17XNL|MALPY01748|2002-09-10|ds-DNA... 27 7.0 Plasmodium_yoelii_yoelii_str._17XNL|MALPY02137|2002-09-10|ds-DNA... 27 7.8 Plasmodium_yoelii_yoelii_str._17XNL|MALPY01459|2002-09-10|ds-DNA... 27 7.8 Plasmodium_yoelii_yoelii_str._17XNL|MALPY02132|2002-09-10|ds-DNA... 27 9.3 Plasmodium_yoelii_yoelii_str._17XNL|MALPY01699|2002-09-10|ds-DNA... 27 9.8 Plasmodium_yoelii_yoelii_str._17XNL|MALPY01912|2002-09-10|ds-DNA... 27 9.9 >Plasmodium_yoelii_yoelii_str._17XNL|MALPY00385|2002-09-10|ds- DNA|Plasmodium_yoelii_TIGR Length = 7268 Score = 28.5 bits (62), Expect = 3.0, Method: Composition-based stats. Identities = 13/30 (43%), Positives = 18/30 (60%) Frame = +1 Query: 14 ILPVFFSNCLFLALYDSVILLKHVVLLLSR 43 I + FSNC FL+LY+ + +LLSR Sbjct: 2173 IFFIIFSNCFFLSLYNFICS*YFAFILLSR 2262 >Plasmodium_yoelii_yoelii_str._17XNL|MALPY00157|2002-09-10|ds- DNA|Plasmodium_yoelii_TIGR Length = 15550 Score = 28.1 bits (61), Expect = 3.8, Method: Composition-based stats. Identities = 14/32 (43%), Positives = 21/32 (65%) Frame = +3 Query: 13 QILPVFFSNCLFLALYDSVILLKHVVLLLSRS 44 QI P FFSN + L Y ++I+ KH++ L + S Sbjct: 2403 QIKP-FFSNNIILLFYINLIIEKHIIYLTTDS 2495 >Plasmodium_yoelii_yoelii_str._17XNL|MALPY01748|2002-09-10|ds- DNA|Plasmodium_yoelii_TIGR Length = 13418 Score = 27.3 bits (59), Expect = 7.0, Method: Composition-based stats. Identities = 12/31 (38%), Positives = 21/31 (67%) Frame = +3 Query: 14 ILPVFFSNCLFLALYDSVILLKHVVLLLSRS 44 I P F+SN LFL Y+ ++L ++V++ + S Sbjct: 39 IFP-FYSNLLFL*KYNPILLFQNVIIFYTHS 128 >Plasmodium_yoelii_yoelii_str._17XNL|MALPY02137|2002-09-10|ds- DNA|Plasmodium_yoelii_TIGR Length = 6803 Score = 27.3 bits (59), Expect = 7.8, Method: Composition-based stats. Identities = 11/28 (39%), Positives = 19/28 (67%) Frame = +2 Query: 17 VFFSNCLFLALYDSVILLKHVVLLLSRS 44 +FFSN + L Y ++I+ KH++ L + S Sbjct: 404 LFFSNNIILLFYINLIIEKHIIYLTTDS 487 >Plasmodium_yoelii_yoelii_str._17XNL|MALPY01459|2002-09-10|ds- DNA|Plasmodium_yoelii_TIGR Length = 17648 Score = 27.3 bits (59), Expect = 7.8, Method: Composition-based stats. Identities = 11/28 (39%), Positives = 19/28 (67%) Frame = +2 Query: 17 VFFSNCLFLALYDSVILLKHVVLLLSRS 44 +FFSN + L Y ++I+ KH++ L + S Sbjct: 7832 LFFSNNIILLFYINLIIEKHIIYLTTDS 7915 >Plasmodium_yoelii_yoelii_str._17XNL|MALPY02132|2002-09-10|ds- DNA|Plasmodium_yoelii_TIGR Length = 5248 Score = 26.9 bits (58), Expect = 9.3, Method: Composition-based stats. Identities = 12/40 (30%), Positives = 22/40 (55%) Frame = +1 Query: 3 ILSVDLLITLQILPVFFSNCLFLALYDSVILLKHVVLLLS 42 + V L+ + + FFSN + L Y ++I KH++ L + Sbjct: 3058 LFKVT*LVIINTIKPFFSNNIILIFYINLITEKHIIYLTT 3177 >Plasmodium_yoelii_yoelii_str._17XNL|MALPY01699|2002-09-10|ds- DNA|Plasmodium_yoelii_TIGR Length = 2596 Score = 26.9 bits (58), Expect = 9.8, Method: Composition-based stats. Identities = 11/28 (39%), Positives = 19/28 (67%) Frame = +1 Query: 17 VFFSNCLFLALYDSVILLKHVVLLLSRS 44 +FFSN + L Y ++I+ KH++ L + S Sbjct: 301 LFFSNNIILLSYTNLIIEKHIIYLTTDS 384 >Plasmodium_yoelii_yoelii_str._17XNL|MALPY01912|2002-09-10|ds- DNA|Plasmodium_yoelii_TIGR Length = 3057 Score = 26.9 bits (58), Expect = 9.9, Method: Composition-based stats. Identities = 11/27 (40%), Positives = 18/27 (66%) Frame = +2 Query: 18 FFSNCLFLALYDSVILLKHVVLLLSRS 44 FFSN + L Y ++I+ KH++ L + S Sbjct: 590 FFSNNIILLFYINLIIEKHIIYLTTDS 670 TBLASTN 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= SPP00000003_1.0 # Protein # Iodothyronine deiodinase 3 (DI3) # Homo sapiens # Complete (278 letters) Database: yoelii.fasta 2960 sequences; 20,171,213 total letters Searching..................................................done ***** No hits found ****** Database: yoelii.fasta Posted date: Mar 5, 2008 11:48 AM Number of letters in database: 20,171,213 Number of sequences in database: 2960 Lambda K H 0.325 0.139 0.450 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2960 Number of Hits to DB: 17,087,861 Number of extensions: 248289 Number of successful extensions: 1214 Number of sequences better than 10.0: 16 Number of HSP's gapped: 1214 Number of HSP's successfully gapped: 16 Length of database: 6,723,737 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 43 (21.2 bits)