TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= PFI1515w_changed  | Plasmodium falciparum 3D7 | Sel2
protein|conserved Plasmodium selenoprotein | protein  | length=229
         (229 letters)

Database: genome.fa 
           2960 sequences; 20,171,213 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Plasmodium_yoelii_yoelii_str._17XNL|MALPY00297|2002-09-10|ds-DNA...    28   4.7  
Plasmodium_yoelii_yoelii_str._17XNL|MALPY00686|2002-09-10|ds-DNA...    27   5.7  

>Plasmodium_yoelii_yoelii_str._17XNL|MALPY00297|2002-09-10|ds-
            DNA|Plasmodium_yoelii_TIGR
          Length = 14918

 Score = 27.7 bits (60), Expect = 4.7,   Method: Composition-based stats.
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
 Frame = -2

Query: 79   NKIKNYFD----ILNKGRETEIYFENNNYIVDNDQK 110
            NKI  Y D    ILNK R+  I    NNY+ +N++K
Sbjct: 8011 NKIHEYIDKKILILNKTRDDNISSLENNYLEENERK 7904


>Plasmodium_yoelii_yoelii_str._17XNL|MALPY00686|2002-09-10|ds-
            DNA|Plasmodium_yoelii_TIGR
          Length = 7235

 Score = 27.3 bits (59), Expect = 5.7,   Method: Composition-based stats.
 Identities = 12/30 (40%), Positives = 21/30 (70%)
 Frame = -1

Query: 80   KIKNYFDILNKGRETEIYFENNNYIVDNDQ 109
            +IKN+ D+L + +    YF+N+NY+ D D+
Sbjct: 6701 QIKNFLDVLKRDQIYRSYFDNHNYVYDFDK 6612


  Database: genome.fa
    Posted date:  Feb 25, 2008  2:31 PM
  Number of letters in database: 20,171,213
  Number of sequences in database:  2960
  
Lambda     K      H
   0.329    0.144    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2960
Number of Hits to DB: 10,121,387
Number of extensions: 294449
Number of successful extensions: 3911
Number of sequences better than 10.0: 179
Number of HSP's gapped: 3904
Number of HSP's successfully gapped: 191
Length of query: 229
Length of database: 6,723,737
Length adjustment: 93
Effective length of query: 136
Effective length of database: 6,448,457
Effective search space: 876990152
Effective search space used: 876990152
Neighboring words threshold: 13
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 42 (20.8 bits)