TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= PF14_0033_changed  | Plasmodium falciparum 3D7 | conserved
Plasmodium selenoprotein, unknown function|Sel1 protein | protein  |
length=114
         (116 letters)

Database: genome.fa 
           2960 sequences; 20,171,213 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Plasmodium_yoelii_yoelii_str._17XNL|MALPY02298|2002-09-10|ds-DNA...    37   0.001
Plasmodium_yoelii_yoelii_str._17XNL|MALPY02422|2002-09-10|ds-DNA...    26   3.4  
Plasmodium_yoelii_yoelii_str._17XNL|MALPY00234|2002-09-10|ds-DNA...    25   8.6  

>Plasmodium_yoelii_yoelii_str._17XNL|MALPY02298|2002-09-10|ds-
            DNA|Plasmodium_yoelii_TIGR
          Length = 3736

 Score = 37.4 bits (85), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/34 (50%), Positives = 26/34 (76%)
 Frame = +2

Query: 7    NKKNADYEIFLRDRKLKYEKIRKRNALHNKFILP 40
            N +  DYE  L++RKLKYE +R+ N+ +NK+I+P
Sbjct: 2825 NDEKNDYESILKNRKLKYENLRRNNSSYNKYIVP 2926



 Score = 35.4 bits (80), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/25 (64%), Positives = 20/25 (80%)
 Frame = +1

Query: 92   RTGGLPKSRIMELKNLGTCLGSTXG 116
            +TG + +SRIMELKN+  CLGST G
Sbjct: 3403 KTGNIGRSRIMELKNISACLGST*G 3477


>Plasmodium_yoelii_yoelii_str._17XNL|MALPY02422|2002-09-10|ds-
           DNA|Plasmodium_yoelii_TIGR
          Length = 4686

 Score = 26.2 bits (56), Expect = 3.4,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 25/63 (39%)
 Frame = +1

Query: 3   DRKENKKNADYEIFLRDRKLKYEKIRKRNALHNKFILPXXXXXXXXXXXXXTVINILAIF 62
           ++ +N +NA   +F      KY+ I   +   N F  P               INIL  F
Sbjct: 340 NKSDNNENAFMNLF------KYKNIISYDIFINSFSYPNDSSFQAIVHFSHVFINILRTF 501

Query: 63  FKT 65
           FKT
Sbjct: 502 FKT 510


>Plasmodium_yoelii_yoelii_str._17XNL|MALPY00234|2002-09-10|ds-
            DNA|Plasmodium_yoelii_TIGR
          Length = 6499

 Score = 24.6 bits (52), Expect = 8.6,   Method: Composition-based stats.
 Identities = 16/33 (48%), Positives = 17/33 (51%)
 Frame = +1

Query: 7    NKKNADYEIFLRDRKLKYEKIRKRNALHNKFIL 39
            N KN +  I   DRKLK EK      LHN  IL
Sbjct: 5251 NVKNINKNIQKVDRKLKKEKYAYDALLHNSLIL 5349


  Database: genome.fa
    Posted date:  Feb 25, 2008  2:31 PM
  Number of letters in database: 20,171,213
  Number of sequences in database:  2960
  
Lambda     K      H
   0.325    0.141    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2960
Number of Hits to DB: 2,203,361
Number of extensions: 25546
Number of successful extensions: 240
Number of sequences better than 10.0: 12
Number of HSP's gapped: 239
Number of HSP's successfully gapped: 13
Length of query: 116
Length of database: 6,723,737
Length adjustment: 83
Effective length of query: 33
Effective length of database: 6,478,057
Effective search space: 213775881
Effective search space used: 213775881
Neighboring words threshold: 13
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 40 (20.0 bits)