genewise $Name: wise2-2-0 $ (unreleased release) This program is freely distributed under a GPL. See source directory Copyright (c) GRL limited: portions of the code are from separate copyright Query protein: MAL8P1.86_changed Comp Matrix: blosum62.bla Gap open: 12 Gap extension: 2 Start/End global Target Sequence Plasmodium_yoelii_TIGR Strand: forward Start/End (protein) global Gene Paras: worm.gf Codon Table: codon.table Subs error: 1e-05 Indel error: 1e-05 Model splice? model Model codon bias? flat Model intron bias? tied Null model syn Algorithm 623 genewise output Score 346.07 bits over entire alignment Scores as bits over a synchronous coding model Warning: The bits scores is not probablistically correct for single seqs See WWW help for more info MAL8P1.86_chang 1 MILKKVYILIILILLSILSRTVDSGUSKQLHIKLPDEDDDYLAKLIGVF M+LK+VY+ ++ IL I + D+G SK LHIKLP+EDDDYL KLI +F MVLKRVYLFVVFILFYISIQYADAGXSKTLHIKLPNEDDDYLGKLINIF Plasmodium_yoel 47 agtaagtctggtatttatactggggttaatcaatcaggggttgataaat tttagtattttttttatctaacacggcactatatcaaaaaatgattatt gtgagtctttactattaaaatttaaataggtaaaatattttaaaacctt MAL8P1.86_chang 50 NDICTYSINNKEKIAKILSTSAVSVYTITSLYNSGITFKKNPHYSFFLP N+ICTYS+NNK+KIAKI++TS +S YT+ SLYNSGITFKKNPHYS+F P NNICTYSLNNKKKIAKIITTSLLSGYTLNSLYNSGITFKKNPHYSLFFP Plasmodium_yoel 194 aaatatttaaaaaagaaaaatcctgtacatttatgaataaacctttttc aatgcactaaaaatcattcccttcgactactaacgtctaaacaactttc ttatttaattaaatcataaaaattattctagccgttatagtacttatca MAL8P1.86_chang 99 SQKYILKIINNNVNIQNNDIKKIDNLKDIPIFERTFT--NKHNIQMSKT S +YI ++ N +IK LK IFER +T +I + SNEYIKNVFKKLK--KNYEIK--TKLKKDQIFERDITWYDNQSINNVEI Plasmodium_yoel 341 tagtaaagtaata aatgaa aataagcatgagaattgacaaaagga caaataattaata aaaata cataaaattagatcgaaaagtaatat atattatgtaaaa attaaa gaaaacaataataagtttacattaaa MAL8P1.86_chang 146 YILNNFINFINFLPYKLKKESLYNFSKYKEFDGLKYVENPFTQVQVLNH Y+ NN+ NF++F P KLK SLYNFSKY+EF LK N F V+V+ H YVSNNLKNFLSFFPNKLKLTSLYNFSKYEEFKDLK---NLFNYVKVMKH Plasmodium_yoel 476 tgtaataatcattcaatacatttattatggtagta actatgagaac atcaataattgttcaatatcctaatcaaaataata attaatattaa ttcttaatcattctcaaagaaatttaataacataa caccttgagat MAL8P1.86_chang 195 EDNIIVYQAKTKKHYWIHLPFKYNIIKISDDNTTSYILMFIPLYKYYSN +++I+++ K KKH+WIH+P+KYNI K +TT+ L +IPLYKYYS+ QNDIFIFHGKLKKHFWIHIPMKYNITKSETGDTTT--LTIIPLYKYYSD Plasmodium_yoel 614 cagatatcgataacttacacaataaaatgaggaaa taaacttatttg aaattttagataaatgtatctaaatcacacgaccc tcttctaaaaca attttattaaaaattgataagatttgatattttct aattaacattat MAL8P1.86_chang 244 YIIQMKITSNNNNQNVTFSSCIKQEKTEHIQNNSFHYDIIKNISKHITY Y+I++++ NNN F + IK ++ N ++ +IIKNI+ ++TY YVIEIQFVKQNNN--MKFITSIKSKENNKKNTNLYYKNIIKNIAMYFTY Plasmodium_yoel 755 tgagactgacaaa aataataatagaaaaaaatttaaaaaaagattat attatattaaaaa tattcctacaaaaaaacataaaattaatctatca ttcatatgaattt ggtcaccaaaattaatatattataaatatgttat MAL8P1.86_chang 293 DIINAIDNNINILYMRNVKPGKYNFINTTNALQKKTKNYKKKKFTLPSF D++N I NN++I Y R VK K +FI N L K KN K + P F DLFNGIHNNLDIFYKRGVKLRKISFIRPNNLLSK--KNSKGTTYRAPLF Plasmodium_yoel 896 gttagacaacgattaaggaccaaataacaattta aatagaatcgctt attagtaaatattaaggtatgatgttgcaattca aacagccagcctt tattgatccacattaataattattttaaccaaaa ataaaaacttaat MAL8P1.86_chang 342 KSLPFKFKRT K +K KR KHYKLKTKRI Plasmodium_yoel 1037 actataaaaa aaaatacagt gctgaaagaa // Gene 1 Gene 47 1066 Exon 47 1066 phase 0 // >Plasmodium_yoelii_TIGR.[47:1066].sp.tr MVLKRVYLFVVFILFYISIQYADAG*SKTLHIKLPNEDDDYLGKLINIFNNICTYSLNNK KKIAKIITTSLLSGYTLNSLYNSGITFKKNPHYSLFFPSNEYIKNVFKKLKKNYEIKTKL KKDQIFERDITWYDNQSINNVEIYVSNNLKNFLSFFPNKLKLTSLYNFSKYEEFKDLKNL FNYVKVMKHQNDIFIFHGKLKKHFWIHIPMKYNITKSETGDTTTLTIIPLYKYYSDYVIE IQFVKQNNNMKFITSIKSKENNKKNTNLYYKNIIKNIAMYFTYDLFNGIHNNLDIFYKRG VKLRKISFIRPNNLLSKKNSKGTTYRAPLFKHYKLKTKRI // >Plasmodium_yoelii_TIGR.[47:1066].sp ATGGTTTTGAAAAGGGTTTACCTTTTTGTTGTATTCATTTTATTTTATATATCAATACAA TATGCTGATGCAGGATGATCTAAAACGTTGCATATAAAATTACCAAATGAAGATGATGAT TATTTAGGAAAATTAATCAACATTTTTAATAATATATGTACTTATTCATTAAATAATAAA AAAAAAATTGCCAAAATTATAACAACATCACTACTTTCTGGATATACTCTCAATTCATTG TACAACTCGGGTATTACATTTAAAAAGAATCCACACTATTCTTTATTTTTCCCATCAAAT GAATATATTAAAAATGTGTTTAAAAAATTAAAAAAAAATTATGAAATAAAAACGAAATTA AAAAAAGACCAAATATTTGAAAGAGATATAACATGGTATGATAATCAAAGCATAAATAAT GTAGAAATATATGTTTCCAATAATTTAAAAAATTTCCTAAGTTTTTTCCCTAACAAATTA AAACTGACATCATTATATAATTTTTCAAAATATGAAGAATTCAAAGATTTAAAAAACCTA TTCAACTATGTTAAGGTAATGAAACATCAAAATGATATTTTTATATTTCATGGAAAATTA AAAAAACATTTTTGGATACATATACCAATGAAATATAATATTACGAAATCTGAAACTGGT GATACTACCACTTTAACAATTATTCCATTATACAAATATTATTCAGATTATGTTATCGAA ATTCAATTTGTGAAACAAAATAATAATATGAAGTTTATCACATCCATCAAATCAAAAGAA AATAATAAAAAAAATACAAATTTATATTATAAAAATATAATAAAAAATATAGCTATGTAT TTTACATATGATTTATTTAATGGGATACATAACAACCTAGACATATTTTATAAAAGAGGT GTAAAACTTCGTAAAATTAGTTTTATTAGACCAAACAACTTATTATCAAAAAAAAATTCA AAAGGAACAACATACCGTGCTCCATTATTTAAGCACTATAAGTTAAAAACAAAGAGAATA //